Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 81 of 345
Found at i:26425566 original size:39 final size:40
Alignment explanation
Indices: 26425521--26425688 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
26425511 CGGGGTTTAG
* * *
26425521 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
26425560 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
26425600 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
26425640 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
26425681 CCGGATAT
1 CCGGATAT
26425689 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:26425671 original size:41 final size:40
Alignment explanation
Indices: 26425544--26425688 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
26425534 CTCGCACAAG
* * * * *
26425544 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
26425584 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
26425624 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
26425665 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
26425689 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:26433578 original size:40 final size:40
Alignment explanation
Indices: 26433495--26433634 Score: 131
Period size: 40 Copynumber: 3.5 Consensus size: 40
26433485 AATCAAGCAT
** ** * *
26433495 CTTCGGGGTTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
26433533 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * * *
26433573 CTTCGGGACTTAGCCCAGATATAGTCGCTAGCACAACTAC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26433613 CTTCGGGACTTAGCTCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
26433635 CATTCGAGTA
Statistics
Matches: 81, Mismatches: 19, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
38 10 0.12
39 15 0.19
40 56 0.69
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:26444042 original size:21 final size:21
Alignment explanation
Indices: 26444018--26444059 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26444008 TATTTAGGTA
*
26444018 TGTTTT-AAGCTTATTTGAATG
1 TGTTTTGAAGC-TATGTGAATG
26444039 TGTTTTGAAGCTATGTGAATG
1 TGTTTTGAAGCTATGTGAATG
26444060 GTTGATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.24, C:0.05, G:0.24, T:0.48
Consensus pattern (21 bp):
TGTTTTGAAGCTATGTGAATG
Found at i:26446860 original size:15 final size:15
Alignment explanation
Indices: 26446840--26446881 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
26446830 TGATAACAAA
26446840 AATAATAATATAAAT
1 AATAATAATATAAAT
**
26446855 AATAATAGCATAAAT
1 AATAATAATATAAAT
*
26446870 GATAATAATATA
1 AATAATAATATA
26446882 TATGGTATTA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (15 bp):
AATAATAATATAAAT
Found at i:26446933 original size:15 final size:15
Alignment explanation
Indices: 26446913--26446943 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26446903 TGATAATAGA
*
26446913 AATAAAAGTATATAT
1 AATAAAAATATATAT
26446928 AATAAAAATATATAT
1 AATAAAAATATATAT
26446943 A
1 A
26446944 TGTACGGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
AATAAAAATATATAT
Found at i:26447070 original size:19 final size:20
Alignment explanation
Indices: 26447029--26447070 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
26447019 AAATGATGTG
* *
26447029 CATGATATAATATTAATATA
1 CATGATATAATATTAAAAAA
*
26447049 CATGATATAGT-TTAAAAAA
1 CATGATATAATATTAAAAAA
26447068 CAT
1 CAT
26447071 AAACATAAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (20 bp):
CATGATATAATATTAAAAAA
Found at i:26450308 original size:83 final size:83
Alignment explanation
Indices: 26450199--26450355 Score: 196
Period size: 83 Copynumber: 1.9 Consensus size: 83
26450189 AGACTCGATA
* * * * *
26450199 CTTTTAAAATGAAAAATTTTTCATTTAAATATTTTTATAATTTATAA-AATTTTAAA-T-TAAAA
1 CTTTTAAAATGAAAAATATTTAATTT-AAT-TCTTTAAAATTTATAAGAA-TATAAACTATAAAA
26450261 ATAATAAAATTACACTTTAAT
63 ATAATAAAATTACACTTTAAT
*
26450282 CTTTTAAAATGATAAAA-ATTTAATTTAATTCTTTAAAATTTATAAGAATATAAACTATTAAAAT
1 CTTTTAAAATGA-AAAATATTTAATTTAATTCTTTAAAATTTATAAGAATATAAACTATAAAAAT
26450346 AATAAAATTA
65 AATAAAATTA
26450356 TATTTTTAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
81 19 0.30
82 6 0.09
83 35 0.55
84 4 0.06
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (83 bp):
CTTTTAAAATGAAAAATATTTAATTTAATTCTTTAAAATTTATAAGAATATAAACTATAAAAATA
ATAAAATTACACTTTAAT
Found at i:26451794 original size:9 final size:10
Alignment explanation
Indices: 26451769--26451801 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
26451759 ATGTTGTTTA
*
26451769 ATTTGATATT
1 ATTTGTTATT
26451779 ATTTGTTATT
1 ATTTGTTATT
26451789 -TTTGTTATT
1 ATTTGTTATT
26451798 ATTT
1 ATTT
26451802 ATGTTATGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (10 bp):
ATTTGTTATT
Found at i:26454779 original size:16 final size:16
Alignment explanation
Indices: 26454758--26454845 Score: 52
Period size: 16 Copynumber: 5.1 Consensus size: 16
26454748 TACAATTGTG
*
26454758 TAAATATTATTAAAAT
1 TAAATAATATTAAAAT
*
26454774 TAAATAATAATAAAACT
1 TAAATAATATTAAAA-T
* *
26454791 ATCAAAT-ATCAAATAATAT
1 -T-AAATAAT--ATTAAAAT
*
26454810 TAAAAGTACTATTAAAAT
1 T-AAA-TAATATTAAAAT
*
26454828 CAAATAATATTAAAAT
1 TAAATAATATTAAAAT
26454844 TA
1 TA
26454846 TCTAATATCA
Statistics
Matches: 55, Mismatches: 10, Indels: 14
0.70 0.13 0.18
Matches are distributed among these distances:
16 25 0.45
17 4 0.07
18 13 0.24
19 6 0.11
20 7 0.13
ACGTcount: A:0.59, C:0.06, G:0.01, T:0.34
Consensus pattern (16 bp):
TAAATAATATTAAAAT
Found at i:26454821 original size:29 final size:28
Alignment explanation
Indices: 26454775--26454868 Score: 108
Period size: 26 Copynumber: 3.5 Consensus size: 28
26454765 TATTAAAATT
*
26454775 AAATAATAAT-AAA-ACTATCAAATATC
1 AAATAATATTAAAATACTATCAAATATC
*
26454801 AAATAATATTAAAAGTACTATTAAA-ATC
1 AAATAATATTAAAA-TACTATCAAATATC
*
26454829 AAATAATATTAAAAT--TATCTAATATC
1 AAATAATATTAAAATACTATCAAATATC
26454855 AAATAATAATTAAA
1 AAATAAT-ATTAAA
26454869 TATCTCAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
25 5 0.08
26 19 0.32
27 10 0.17
28 17 0.29
29 8 0.14
ACGTcount: A:0.60, C:0.07, G:0.01, T:0.32
Consensus pattern (28 bp):
AAATAATATTAAAATACTATCAAATATC
Found at i:26454853 original size:54 final size:55
Alignment explanation
Indices: 26454765--26454868 Score: 165
Period size: 54 Copynumber: 1.9 Consensus size: 55
26454755 GTGTAAATAT
*
26454765 TATTAAAATTAAATAATAATAAAACTATCAAATATCAAATAAT-ATTAAAAGTAC
1 TATTAAAATCAAATAATAATAAAACTATCAAATATCAAATAATAATTAAAAGTAC
* * *
26454819 TATTAAAATCAAATAATATTAAAATTATCTAATATCAAATAATAATTAAA
1 TATTAAAATCAAATAATAATAAAACTATCAAATATCAAATAATAATTAAA
26454869 TATCTCAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
54 39 0.87
55 6 0.13
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.34
Consensus pattern (55 bp):
TATTAAAATCAAATAATAATAAAACTATCAAATATCAAATAATAATTAAAAGTAC
Found at i:26458676 original size:23 final size:23
Alignment explanation
Indices: 26458645--26458710 Score: 80
Period size: 23 Copynumber: 2.8 Consensus size: 23
26458635 GTGAGGAACG
26458645 AACTAAAAACTAAACTAAAATTAC
1 AACTAAAAA-TAAACTAAAATTAC
*
26458669 AACTAAAAAGAAACCT-AAATTAC
1 AACTAAAAATAAA-CTAAAATTAC
*
26458692 AAATAAAAATAAAACTAAA
1 AACTAAAAAT-AAACTAAA
26458711 TAGGAGACGA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 20 0.56
24 16 0.44
ACGTcount: A:0.67, C:0.14, G:0.02, T:0.18
Consensus pattern (23 bp):
AACTAAAAATAAACTAAAATTAC
Found at i:26460965 original size:11 final size:11
Alignment explanation
Indices: 26460951--26460992 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
26460941 TGCAAAAAAA
26460951 AAAACTAAGAT
1 AAAACTAAGAT
*
26460962 AAAACTTAGA-
1 AAAACTAAGAT
*
26460972 GAAACTAAGACT
1 AAAACTAAGA-T
26460984 AAAACTAAG
1 AAAACTAAG
26460993 CTAATGTGTG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
10 8 0.32
11 9 0.36
12 8 0.32
ACGTcount: A:0.60, C:0.12, G:0.12, T:0.17
Consensus pattern (11 bp):
AAAACTAAGAT
Found at i:26462882 original size:25 final size:25
Alignment explanation
Indices: 26462854--26462911 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 25
26462844 ACCGATCAAT
26462854 ATGCTCGTAG-GAACTATATAATAGA
1 ATGCTCGTAGAGAACT-TATAATAGA
**
26462879 ATGCTCG-AGAGGGCTTATAATAGA
1 ATGCTCGTAGAGAACTTATAATAGA
26462903 ATTGCTCGT
1 A-TGCTCGT
26462912 CCGAGCTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 12 0.43
25 16 0.57
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (25 bp):
ATGCTCGTAGAGAACTTATAATAGA
Found at i:26465883 original size:12 final size:12
Alignment explanation
Indices: 26465866--26465900 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
26465856 TTCTAATAAA
26465866 AATTATTATATT
1 AATTATTATATT
26465878 AATTA-TATTATT
1 AATTATTA-TATT
26465890 AATTATTATAT
1 AATTATTATAT
26465901 GTAGCTTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (12 bp):
AATTATTATATT
Found at i:26465884 original size:9 final size:8
Alignment explanation
Indices: 26465867--26465900 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
26465857 TCTAATAAAA
26465867 ATTATTAT
1 ATTATTAT
26465875 ATTAATTAT
1 ATT-ATTAT
26465884 ATTATTA-
1 ATTATTAT
26465891 ATTATTAT
1 ATTATTAT
26465899 AT
1 AT
26465901 GTAGCTTTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 7 0.29
8 9 0.38
9 8 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
ATTATTAT
Found at i:26473678 original size:3 final size:3
Alignment explanation
Indices: 26473670--26473707 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
26473660 TGTAAAATCA
26473670 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
26473708 TAGGGGTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:26473990 original size:6 final size:6
Alignment explanation
Indices: 26473967--26473999 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
26473957 CAAAGAATCT
*
26473967 AAAGG- AAAGGA AAGGGA AAAGGA AAAGGA AAAG
1 AAAGGA AAAGGA AAAGGA AAAGGA AAAGGA AAAG
26474000 TGGAGTTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
5 5 0.20
6 20 0.80
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (6 bp):
AAAGGA
Found at i:26477654 original size:44 final size:44
Alignment explanation
Indices: 26477496--26477667 Score: 175
Period size: 44 Copynumber: 3.8 Consensus size: 44
26477486 GGGTGATTTG
* * * *
26477496 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGC-CACATT
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGATT
* * * *
26477539 ATGAGAGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCGTAGAGGTG
1 -T--GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TA-AGATT
* *
26477590 AGTGCCAGTGTAAGACATGTCTGGGACATGCATTGGCTAAGATT
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGATT
*
26477634 TGTGCTAGTGTAAGACATGTCTGGGACATGCATC
1 TGTGCCAGTGTAAGACATGTCTGGGACATGCATC
26477668 AGCATGTCCA
Statistics
Matches: 104, Mismatches: 17, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
44 35 0.34
45 2 0.02
46 18 0.17
47 28 0.27
48 19 0.18
51 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (44 bp):
TGTGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAAGATT
Found at i:26480407 original size:19 final size:20
Alignment explanation
Indices: 26480373--26480410 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
26480363 GGAAAATAAC
*
26480373 AAAAGAGAAGAGAAAACTTG
1 AAAAAAGAAGAGAAAACTTG
26480393 AAAAAAGAA-AGAAAACTT
1 AAAAAAGAAGAGAAAACTT
26480411 AAGAAGCTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.66, C:0.05, G:0.18, T:0.11
Consensus pattern (20 bp):
AAAAAAGAAGAGAAAACTTG
Found at i:26496855 original size:40 final size:41
Alignment explanation
Indices: 26496761--26496979 Score: 253
Period size: 40 Copynumber: 5.6 Consensus size: 41
26496751 TATTCGAATG
*
26496761 ATATCCGGGCTAAG-TCCCGAAGGCATTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCA-TTTGTGCTAGTGACT
* *
26496802 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
* *
26496842 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGCCT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
26496882 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* **
26496922 ATATCCGGGCTAAGA--CCGAAGGC--TTGTGCGAGTGGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
26496959 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
26496980 ATACTTGGGT
Statistics
Matches: 155, Mismatches: 15, Indels: 20
0.82 0.08 0.11
Matches are distributed among these distances:
35 1 0.01
36 6 0.04
37 21 0.14
39 9 0.06
40 93 0.60
41 24 0.15
42 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:26504942 original size:40 final size:40
Alignment explanation
Indices: 26504882--26505065 Score: 262
Period size: 40 Copynumber: 4.6 Consensus size: 40
26504872 TATTCGAATG
*
26504882 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * * *
26504922 ATATCCAGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
26504962 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
26505002 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
26505042 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
26505066 TTTGTGTGAG
Statistics
Matches: 126, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:26514335 original size:16 final size:16
Alignment explanation
Indices: 26514293--26514327 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
26514283 GTAGATCGGC
*
26514293 AAAAGCCGAAATGCCG
1 AAAAGCTGAAATGCCG
26514309 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
26514325 AAA
1 AAA
26514328 TGTTGAAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.49, C:0.20, G:0.23, T:0.09
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:26520372 original size:31 final size:31
Alignment explanation
Indices: 26520313--26520370 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
26520303 TCAATTCATA
26520313 TTTTACATACTTCAACTTCACATTTATATTC
1 TTTTACATACTTCAACTTCACATTTATATTC
*
26520344 TTTTACA-ACTT-AA-TTCAACATATATAT
1 TTTTACATACTTCAACTTC-ACATTTATAT
26520371 ATATAATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 3 0.12
29 11 0.44
30 4 0.16
31 7 0.28
ACGTcount: A:0.34, C:0.19, G:0.00, T:0.47
Consensus pattern (31 bp):
TTTTACATACTTCAACTTCACATTTATATTC
Found at i:26523679 original size:14 final size:14
Alignment explanation
Indices: 26523660--26523720 Score: 61
Period size: 14 Copynumber: 4.4 Consensus size: 14
26523650 CTTCAGTTAT
26523660 TTAATTATAATTAA
1 TTAATTATAATTAA
*
26523674 TTAATTATATTTAA
1 TTAATTATAATTAA
* * *
26523688 ATAATAAT-ATGAA
1 TTAATTATAATTAA
26523701 TTTAATTATAATTAA
1 -TTAATTATAATTAA
*
26523716 ATAAT
1 TTAAT
26523721 AATTCAAAGA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
13 3 0.08
14 29 0.81
15 4 0.11
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TTAATTATAATTAA
Found at i:26525394 original size:35 final size:35
Alignment explanation
Indices: 26525355--26525513 Score: 203
Period size: 35 Copynumber: 4.6 Consensus size: 35
26525345 CATGGAAAAA
* *
26525355 TTGTGAAACGTAGGTATGGTATCATCCATACTGAT
1 TTGTGAAACGTAGGTATGGTATTATCCATACTGAG
* *
26525390 TTGTGAAACGTAGGTATCGTATTAACCATACTGAG
1 TTGTGAAACGTAGGTATGGTATTATCCATACTGAG
26525425 TTGTGAAACGTAGGTATGGTATTATCCATACTGAG
1 TTGTGAAACGTAGGTATGGTATTATCCATACTGAG
** * * * *
26525460 TTAAGAAATGTAGGTATGGCATT-CCCATACCGAG
1 TTGTGAAACGTAGGTATGGTATTATCCATACTGAG
* *
26525494 TTGTAAAATGTAGGTATGGT
1 TTGTGAAACGTAGGTATGGT
26525514 TTTTTATATG
Statistics
Matches: 108, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
34 25 0.23
35 83 0.77
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.33
Consensus pattern (35 bp):
TTGTGAAACGTAGGTATGGTATTATCCATACTGAG
Found at i:26532989 original size:35 final size:35
Alignment explanation
Indices: 26532822--26532987 Score: 217
Period size: 35 Copynumber: 4.7 Consensus size: 35
26532812 ATCCATGGCG
* *
26532822 GAGTTGTGAAACGTATGTATGGTATCATCCATACT
1 GAGTTGTGAAACGTAGGTATGGTATTATCCATACT
*
26532857 GAGTTGTGAAACGTAGGTATGGTATTAACCATACT
1 GAGTTGTGAAACGTAGGTATGGTATTATCCATACT
*
26532892 GAGTTGTGAAATGTAGGTATGGTATTATCCATACT
1 GAGTTGTGAAACGTAGGTATGGTATTATCCATACT
** * * *
26532927 GAGTTAAGAAACGTAAGTATGGCATTTTCCATACCT
1 GAGTTGTGAAACGTAGGTATGGTATTATCCATA-CT
* *
26532963 -AGTTGTAAAATGTAGGTATGGTATT
1 GAGTTGTGAAACGTAGGTATGGTATT
26532988 TTAATGAGGA
Statistics
Matches: 113, Mismatches: 17, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
35 111 0.98
36 2 0.02
ACGTcount: A:0.31, C:0.11, G:0.24, T:0.34
Consensus pattern (35 bp):
GAGTTGTGAAACGTAGGTATGGTATTATCCATACT
Found at i:26539000 original size:13 final size:13
Alignment explanation
Indices: 26538982--26539006 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26538972 ATAAAGAATA
26538982 AAATTAACTAACT
1 AAATTAACTAACT
26538995 AAATTAACTAAC
1 AAATTAACTAAC
26539007 GAATGCGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (13 bp):
AAATTAACTAACT
Found at i:26541086 original size:43 final size:43
Alignment explanation
Indices: 26540929--26541086 Score: 153
Period size: 43 Copynumber: 3.7 Consensus size: 43
26540919 GATGTTTTTT
* * *
26540929 CATGTAAGACCATGTCTGGGACGTTGACATCGACT-TATGATTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTA
* * * *
26540973 CGTGTAAGACCACGTTTGGGACGTTAGCATCG-TATTTGATTT
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
* * *
26541015 CGTGTAAGACC-CTGTCTGGCACAG-TGGCATTGATATTTGATTA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTA
*
26541058 CATGTAAGACCACGTCTGGGATGTTGGCA
1 CATGTAAGACCACGTCTGGGACGTTGGCA
26541087 CTGTACGAGC
Statistics
Matches: 93, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.30
43 36 0.39
44 28 0.30
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:26550502 original size:55 final size:55
Alignment explanation
Indices: 26550382--26550503 Score: 136
Period size: 55 Copynumber: 2.2 Consensus size: 55
26550372 CTGCCAAAAC
* **
26550382 AACACAGGCATGCGACACGCCCGTGCCTTGAAACCGTGGCCAAACCTGTCAAATT
1 AACACAGGCGTGCGACACGCCCGTGCCAAGAAACCGTGGCCAAACCTGTCAAATT
** * * * * * * *
26550437 AACATGGGCGTGTGACACGTCCGTGCCAAGCAACCGTGGTCGAACCTGTTAGATT
1 AACACAGGCGTGCGACACGCCCGTGCCAAGAAACCGTGGCCAAACCTGTCAAATT
26550492 AACACAGGCGTG
1 AACACAGGCGTG
26550504 GGACTACATA
Statistics
Matches: 53, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.27, C:0.29, G:0.26, T:0.18
Consensus pattern (55 bp):
AACACAGGCGTGCGACACGCCCGTGCCAAGAAACCGTGGCCAAACCTGTCAAATT
Found at i:26551015 original size:23 final size:22
Alignment explanation
Indices: 26550985--26551029 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
26550975 AGGAAAGCCT
26550985 CATTCTAT-TATCATACCCATGC
1 CATTCTATGT-TCATACCCATGC
*
26551007 CATTACTATGTTCATTCCCATGC
1 CATT-CTATGTTCATACCCATGC
26551030 TACTACCATG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 15 0.75
24 1 0.05
ACGTcount: A:0.24, C:0.31, G:0.07, T:0.38
Consensus pattern (22 bp):
CATTCTATGTTCATACCCATGC
Found at i:26552406 original size:6 final size:6
Alignment explanation
Indices: 26552397--26552436 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
26552387 TGATTAATTT
* *
26552397 TTTTAA TTTTAA TTTTAA TTTT-A TTTTCA TTTTCA TTTTA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
26552437 TGTTTTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
5 5 0.16
6 27 0.84
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:26552428 original size:17 final size:17
Alignment explanation
Indices: 26552390--26552437 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
26552380 ATGATGATGA
*
26552390 TTAATTTT--TTTAATT
1 TTAATTTTAATTTTATT
26552405 TTAATTTTAATTTTATT
1 TTAATTTTAATTTTATT
* *
26552422 TTCATTTTCATTTTAT
1 TTAATTTTAATTTTAT
26552438 GTTTTTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 8 0.29
17 20 0.71
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (17 bp):
TTAATTTTAATTTTATT
Found at i:26552451 original size:23 final size:22
Alignment explanation
Indices: 26552390--26552451 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
26552380 ATGATGATGA
26552390 TTAA-TTTTTTTAATTTTAATT
1 TTAATTTTTTTTAATTTTAATT
* *
26552411 TTAATTTTATTTTCATTTTCATT
1 TTAATTTT-TTTTAATTTTAATT
26552434 TT-ATGTTTTTATTAATTT
1 TTAAT-TTTTT-TTAATTT
26552452 CACCTTTAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
21 4 0.12
22 7 0.21
23 23 0.68
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (22 bp):
TTAATTTTTTTTAATTTTAATT
Found at i:26562798 original size:22 final size:22
Alignment explanation
Indices: 26562763--26562804 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
26562753 TAAATATGTA
*
26562763 TAAATGATCTTTTGGTATGTCG
1 TAAATGATCTTTTGATATGTCG
26562785 TAAAGTGATC-TTTGATATGT
1 TAAA-TGATCTTTTGATATGT
26562805 TTTTATGCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.45
Consensus pattern (22 bp):
TAAATGATCTTTTGATATGTCG
Found at i:26580039 original size:21 final size:21
Alignment explanation
Indices: 26579982--26580031 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
26579972 GCACGGTTTG
*
26579982 CTCACATGGCCATTTGACCCA
1 CTCACATGGCCATGTGACCCA
*
26580003 CTCACACGGCCATGTGACCCA
1 CTCACATGGCCATGTGACCCA
26580024 CTCACATG
1 CTCACATG
26580032 AACATGTGGC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.24, C:0.40, G:0.16, T:0.20
Consensus pattern (21 bp):
CTCACATGGCCATGTGACCCA
Found at i:26585884 original size:14 final size:15
Alignment explanation
Indices: 26585835--26585884 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
26585825 CGTATCTTGG
*
26585835 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
26585850 TCTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
26585865 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
26585879 TTTCTT
1 TTTCTT
26585885 GTTATCTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.10, C:0.18, G:0.12, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:26588278 original size:46 final size:46
Alignment explanation
Indices: 26588228--26588401 Score: 186
Period size: 46 Copynumber: 3.8 Consensus size: 46
26588218 TGTTTGGGCA
* *
26588228 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *** * ** ** *
26588274 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGAGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTAAACG
* * *
26588321 TCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
* *
26588367 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
26588402 AGGCGGGTTA
Statistics
Matches: 102, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
46 68 0.67
47 34 0.33
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTAAACG
Found at i:26588383 original size:93 final size:93
Alignment explanation
Indices: 26588224--26588395 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
26588214 AGGATGTTTG
* *
26588224 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
*
26588289 TTGAGTTCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * ** *
26588317 GGCATCCGAGCTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
26588382 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
26588396 ACTTATAGGC
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:26592939 original size:40 final size:40
Alignment explanation
Indices: 26592862--26593082 Score: 288
Period size: 40 Copynumber: 5.5 Consensus size: 40
26592852 ACCCAAGTAT
* *
26592862 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
26592901 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
26592941 CTTCGGGACTTAACCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26592981 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
26593021 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26593061 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
26593083 CATTCGAATA
Statistics
Matches: 159, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 12 0.08
40 144 0.91
41 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:26600861 original size:22 final size:22
Alignment explanation
Indices: 26600836--26600879 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26600826 AATTAGTTTC
*
26600836 GACTAAA-GTATAACATTCATAT
1 GACTAAATGAATAAC-TTCATAT
26600858 GACTAAATGAATAACTTCATAT
1 GACTAAATGAATAACTTCATAT
26600880 ATGCACATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (22 bp):
GACTAAATGAATAACTTCATAT
Found at i:26601183 original size:40 final size:40
Alignment explanation
Indices: 26601106--26601324 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
26601096 ACCCAAGTAT
* *
26601106 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
*
26601145 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
26601185 CTTCGGGACTTA-CCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26601224 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
26601264 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26601304 CTTC-GGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
26601325 CATTCGAATA
Statistics
Matches: 158, Mismatches: 16, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 62 0.39
40 93 0.59
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:26601237 original size:79 final size:80
Alignment explanation
Indices: 26601106--26601324 Score: 281
Period size: 79 Copynumber: 2.8 Consensus size: 80
26601096 ACCCAAGTAT
* *
26601106 CTTCGGGAT-TTAG-CCGGATATA-ACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
1 CTTC-GGATCTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATA
*
26601168 GTC-ACTAGCATAAATGC
64 G-CAACTAGCACAAATGC
*
26601185 CTTCGGGA-CTTA-CCCGGATATAGTCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTC-GGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
26601248 CAACTCGCACAAATGC
65 CAACTAGCACAAATGC
* * *
26601264 CTTCGGATCTTAGTCCGGATATAGTCACTAGCACAAAAGCCTTC-GGACTTAGCCCGGATAT
1 CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAT
26601325 CATTCGAATA
Statistics
Matches: 125, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
78 4 0.03
79 92 0.74
80 29 0.23
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGC
AACTAGCACAAATGC
Found at i:26601320 original size:119 final size:118
Alignment explanation
Indices: 26601106--26601324 Score: 352
Period size: 119 Copynumber: 1.8 Consensus size: 118
26601096 ACCCAAGTAT
*
26601106 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTC
1 CTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTC
* *
26601171 ACTAGCATAAATGCCTTCGGGACTTACCCGGATATAGTCGCTAGCACAAATGC
66 ACTAGCACAAAAGCCTTCGGGACTTACCCGGATATAGTCGCTAGCACAAATGC
* *
26601224 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
1 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAG
26601288 TCACTAGCACAAAAGCCTTC-GGACTTAGCCCGGATAT
64 TCACTAGCACAAAAGCCTTCGGGACTTA-CCCGGATAT
26601325 CATTCGAATA
Statistics
Matches: 93, Mismatches: 5, Indels: 5
0.90 0.05 0.05
Matches are distributed among these distances:
117 1 0.01
118 18 0.19
119 74 0.80
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (118 bp):
CTTCGGGATTTAGCCGGATATAACAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATATAGTC
ACTAGCACAAAAGCCTTCGGGACTTACCCGGATATAGTCGCTAGCACAAATGC
Found at i:26601946 original size:16 final size:16
Alignment explanation
Indices: 26601922--26601952 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26601912 ACAGCTATAC
*
26601922 CATGGCCCATACCATT
1 CATGACCCATACCATT
26601938 CATGACCCATACCAT
1 CATGACCCATACCAT
26601953 GGCCGGCCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.39, G:0.10, T:0.23
Consensus pattern (16 bp):
CATGACCCATACCATT
Found at i:26604385 original size:5 final size:5
Alignment explanation
Indices: 26604375--26604404 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
26604365 TCTACTTTTA
26604375 TTAAT TTAAT TTAAT TTAAT TTAAT ATTAA
1 TTAAT TTAAT TTAAT TTAAT TTAAT -TTAA
26604405 ACCTTGGGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 20 0.83
6 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
TTAAT
Found at i:26606214 original size:31 final size:29
Alignment explanation
Indices: 26606176--26606249 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 29
26606166 TCTACAAAAA
* * *
26606176 TAGTCACTTTTGTTTGATTCATTTTACATTT
1 TAGTCACTTATGTTTGA--AATGTTACATTT
*
26606207 TAGTCACTTATCTTTGAAATGTTACATTT
1 TAGTCACTTATGTTTGAAATGTTACATTT
*
26606236 TAGCCACTTATGTT
1 TAGTCACTTATGTT
26606250 ATTATTTTTG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 22 0.59
31 15 0.41
ACGTcount: A:0.23, C:0.15, G:0.11, T:0.51
Consensus pattern (29 bp):
TAGTCACTTATGTTTGAAATGTTACATTT
Found at i:26625914 original size:68 final size:68
Alignment explanation
Indices: 26625841--26625992 Score: 177
Period size: 67 Copynumber: 2.2 Consensus size: 68
26625831 CATCATGTGT
* * * * *
26625841 ACAAGAGAGCTACGAGACATTATGATGTAGCTAGGTTGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTACGAGACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
26625904 TGTAG
64 TGTAG
* * *
26625909 ACAAGAGAGCTAC-AG-GATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCAT
1 ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCAT
26625972 GTAG
65 GTAG
26625976 ACAAGAGAGCTACGAGA
1 ACAAGAGAGCTACGAGA
26625993 TAAACTGGCT
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
64 23 0.32
65 3 0.04
66 3 0.04
67 27 0.38
68 15 0.21
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (68 bp):
ACAAGAGAGCTACGAGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATG
TAG
Found at i:26629784 original size:48 final size:48
Alignment explanation
Indices: 26629718--26630059 Score: 605
Period size: 48 Copynumber: 7.1 Consensus size: 48
26629708 GCAGAAATTG
*
26629718 ATGTATGAGATAAGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
* *
26629766 ATGTATGAGATAAGTATATGTGGTAAAGCCGACTGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
26629814 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
26629862 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
26629910 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGTTAATGTGAAATAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTG-AA-AT
*
26629960 ATATATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
*
26630008 ATGTA-GAGATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAAT
1 ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
26630055 ATGTA
1 ATGTA
26630060 GGCGATGTGT
Statistics
Matches: 284, Mismatches: 8, Indels: 5
0.96 0.03 0.02
Matches are distributed among these distances:
47 46 0.16
48 190 0.67
49 4 0.01
50 44 0.15
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (48 bp):
ATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAAT
Found at i:26630268 original size:36 final size:37
Alignment explanation
Indices: 26630206--26630276 Score: 117
Period size: 36 Copynumber: 1.9 Consensus size: 37
26630196 GGAAATATAT
*
26630206 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTA
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTA
*
26630243 TCCGGGTAAGA-CCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATAACTACGTGTGGAGATTT
26630277 CATCTGAGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 21 0.66
37 11 0.34
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATAACTACGTGTGGAGATTTTA
Found at i:26633650 original size:16 final size:17
Alignment explanation
Indices: 26633621--26633652 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26633611 TTATAAACAC
26633621 ATATCAATTATTTCATT
1 ATATCAATTATTTCATT
26633638 ATATCAA-TATTTCAT
1 ATATCAATTATTTCAT
26633653 ATACCATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATCAATTATTTCATT
Found at i:26635591 original size:30 final size:30
Alignment explanation
Indices: 26635557--26635617 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26635547 TCCTTAACTC
26635557 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
26635587 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
26635617 A
1 A
26635618 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:26643263 original size:13 final size:13
Alignment explanation
Indices: 26643245--26643270 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26643235 AATGAATGAA
26643245 TTACCAAAACGAG
1 TTACCAAAACGAG
26643258 TTACCAAAACGAG
1 TTACCAAAACGAG
26643271 CCAAATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (13 bp):
TTACCAAAACGAG
Found at i:26660022 original size:229 final size:232
Alignment explanation
Indices: 26659609--26660071 Score: 782
Period size: 229 Copynumber: 2.0 Consensus size: 232
26659599 NNNNNNNNNN
26659609 TATCATATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATATTTATTTATTATATCAAT
1 TATCATATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATATTTATTTATTATATCAAT
26659674 ATTTCATATACCATAGTTTCCATGTATTCCACATATATTTTTTTCCTCCTCCTCCTCCAATTCCA
66 ATTTCATATACCATAGTTTCCATGTATTCCACATATATTTTTTTCCTCCTCCTCCTCCAATTCCA
26659739 CATCCTTAATGTATTAGCATTCTTGTAGTACGATTTCACAATTTATTAATAAATGTTCACATCAA
131 CATCCTTAATGTATTAGCATTCTTGTAGTACGATTTCACAATTTATTAATAAATGTTCACATCAA
26659804 A-GTG-CCACACGAGTCATAGTAACTTAATTATTTAT
196 AGGTGCCCACACGAGTCATAGTAACTTAATTATTTAT
26659839 TATCATGATACATAACA-TCTCTTTTT-TTTTCTTATAAACACATATCATTTATTTATTATATCA
1 TATCAT-ATACATAACATTCTCTTTTTGTTTTCTTATAAACACATAT-ATTTATTTATTATATCA
*
26659902 ATATTTCATATACCATAGTTTTCATGT-TTCCACATATATTTATTTT--TCCTCCTCCCTCC-AT
64 ATATTTCATATACCATAGTTTCCATGTATTCCACATATATTT-TTTTCCTCCTCCT-CCTCCAAT
26659963 TCCACATCCTTAATGTATATAGCATTCTTGTAAGTACGATTTCAC-ATTTATTAATAAATGTTCA
127 TCCACATCCTTAATGTAT-TAGCATTCTTGT-AGTACGATTTCACAATTTATTAATAAATGTTCA
*
26660027 CATCAAAGTGTGCCCACACGAGTCATAGTCACTTAATTATTTAT
190 CATCAAAG-GTGCCCACACGAGTCATAGTAACTTAATTATTTAT
26660071 T
1 T
26660072 CCCAACCGAG
Statistics
Matches: 222, Mismatches: 2, Indels: 16
0.93 0.01 0.07
Matches are distributed among these distances:
228 27 0.12
229 76 0.34
230 75 0.34
231 13 0.06
232 31 0.14
ACGTcount: A:0.30, C:0.20, G:0.06, T:0.43
Consensus pattern (232 bp):
TATCATATACATAACATTCTCTTTTTGTTTTCTTATAAACACATATATTTATTTATTATATCAAT
ATTTCATATACCATAGTTTCCATGTATTCCACATATATTTTTTTCCTCCTCCTCCTCCAATTCCA
CATCCTTAATGTATTAGCATTCTTGTAGTACGATTTCACAATTTATTAATAAATGTTCACATCAA
AGGTGCCCACACGAGTCATAGTAACTTAATTATTTAT
Found at i:26666448 original size:40 final size:40
Alignment explanation
Indices: 26666389--26666580 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
26666379 CGGATGATAA
* *
26666389 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * **
26666429 TCGGGCTAAGTCCCAAAGGCATTTGTGTTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
26666469 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
26666509 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
26666549 CTGGGCTAAGTCCCGAAGGCATTCGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26666581 AGCTATGTCC
Statistics
Matches: 140, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 139 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26668290 original size:6 final size:6
Alignment explanation
Indices: 26668271--26668355 Score: 55
Period size: 6 Copynumber: 14.0 Consensus size: 6
26668261 AATGATGATG
* * * * *
26668271 TTTAAT TTTA-T TTTATTT TTTATT TTTATT TTTATT TTTCTA TTTCTA
1 TTTATT TTTATT TTTA-TT TTTATT TTTATT TTTATT TTTATT TTTATT
* * * * *
26668319 TTTCTT TTTCTT TTTCTT TTCATT TTATGTT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TT-TATT TTTATT
26668356 AATTTCGCCT
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
5 5 0.07
6 54 0.79
7 9 0.13
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTATT
Found at i:26668293 original size:12 final size:12
Alignment explanation
Indices: 26668275--26668355 Score: 51
Period size: 13 Copynumber: 6.2 Consensus size: 12
26668265 ATGATGTTTA
26668275 ATTTTATTTTATT
1 ATTTTATTTT-TT
26668288 -TTTTA-TTTTT
1 ATTTTATTTTTT
26668298 ATTTTTATTTTTCT
1 A-TTTTATTTTT-T
26668312 ATTTCTATTTCTTT
1 ATTT-TATTT-TTT
*
26668326 -TTCTTTTTCTTTT
1 ATT-TTATT-TTTT
26668339 CATTTTATGTTTTT
1 -ATTTTAT-TTTTT
26668353 ATT
1 ATT
26668356 AATTTCGCCT
Statistics
Matches: 55, Mismatches: 2, Indels: 22
0.70 0.03 0.28
Matches are distributed among these distances:
10 2 0.04
11 3 0.05
12 10 0.18
13 18 0.33
14 17 0.31
15 5 0.09
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (12 bp):
ATTTTATTTTTT
Found at i:26668297 original size:18 final size:18
Alignment explanation
Indices: 26668271--26668355 Score: 71
Period size: 20 Copynumber: 4.3 Consensus size: 18
26668261 AATGATGATG
*
26668271 TTTAATTTTATTTTATTT
1 TTTATTTTTATTTTATTT
26668289 TTTATTTTTATTTTTATTT
1 TTTATTTTTA-TTTTATTT
* *
26668308 TTCTATTTCTATTTCTTTTT
1 TT-TATTTTTATTT-TATTT
*
26668328 CTTTTTCTTTTCATTTTATGTT
1 -TTTAT-TTTT-ATTTTAT-TT
26668350 TTTATT
1 TTTATT
26668356 AATTTCGCCT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
18 9 0.17
19 13 0.25
20 14 0.26
21 11 0.21
22 6 0.11
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (18 bp):
TTTATTTTTATTTTATTT
Found at i:26675311 original size:20 final size:21
Alignment explanation
Indices: 26675276--26675314 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
26675266 TAAGGGACAA
*
26675276 ATTGTTTGAGATTGATTGATG
1 ATTGTATGAGATTGATTGATG
26675297 ATTGTATGA-ATTGATTGA
1 ATTGTATGAGATTGATTGA
26675315 ATAAGTTCAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (21 bp):
ATTGTATGAGATTGATTGATG
Found at i:26681208 original size:23 final size:23
Alignment explanation
Indices: 26681159--26681211 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
26681149 TTCTAAAATC
***
26681159 TAATAAAAATTAAAAAATAGTTT
1 TAATAAAAATTAAAAAATAGAAA
26681182 TAATAAAAATTAAAAATATA-AAA
1 TAATAAAAATTAAAAA-ATAGAAA
26681205 TAATAAA
1 TAATAAA
26681212 TAAATGTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (23 bp):
TAATAAAAATTAAAAAATAGAAA
Found at i:26686624 original size:7 final size:7
Alignment explanation
Indices: 26686612--26686670 Score: 82
Period size: 7 Copynumber: 8.0 Consensus size: 7
26686602 TAAGAATAAG
26686612 GGGTTTA
1 GGGTTTA
26686619 GGGTTTA
1 GGGTTTA
26686626 GGGTTTA
1 GGGTTTA
26686633 GGGTTTTA
1 GGG-TTTA
26686641 GGGTTTTA
1 GGG-TTTA
*
26686649 GGTTTTA
1 GGGTTTA
26686656 GGGTTTTA
1 GGG-TTTA
26686664 GGGTTTA
1 GGGTTTA
26686671 AAACATTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
7 27 0.56
8 21 0.44
ACGTcount: A:0.14, C:0.00, G:0.39, T:0.47
Consensus pattern (7 bp):
GGGTTTA
Found at i:26686640 original size:8 final size:8
Alignment explanation
Indices: 26686610--26686669 Score: 90
Period size: 8 Copynumber: 7.9 Consensus size: 8
26686600 CCTAAGAATA
*
26686610 AGGGGTTT
1 AGGGTTTT
26686618 AGGG-TTT
1 AGGGTTTT
26686625 AGGG-TTT
1 AGGGTTTT
26686632 AGGGTTTT
1 AGGGTTTT
26686640 AGGGTTTT
1 AGGGTTTT
26686648 A-GGTTTT
1 AGGGTTTT
26686655 AGGGTTTT
1 AGGGTTTT
26686663 AGGGTTT
1 AGGGTTT
26686670 AAAACATTAA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
7 21 0.42
8 29 0.58
ACGTcount: A:0.13, C:0.00, G:0.40, T:0.47
Consensus pattern (8 bp):
AGGGTTTT
Found at i:26686640 original size:15 final size:15
Alignment explanation
Indices: 26686610--26686670 Score: 88
Period size: 15 Copynumber: 4.1 Consensus size: 15
26686600 CCTAAGAATA
*
26686610 AGGGGTTTAGGGTTT
1 AGGGTTTTAGGGTTT
26686625 AGGG-TTTAGGGTTTT
1 AGGGTTTTAGGG-TTT
*
26686640 AGGGTTTTAGGTTTT
1 AGGGTTTTAGGGTTT
26686655 AGGGTTTTAGGGTTT
1 AGGGTTTTAGGGTTT
26686670 A
1 A
26686671 AAACATTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
14 7 0.17
15 29 0.69
16 6 0.14
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.46
Consensus pattern (15 bp):
AGGGTTTTAGGGTTT
Found at i:26686655 original size:23 final size:22
Alignment explanation
Indices: 26686610--26686669 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 22
26686600 CCTAAGAATA
*
26686610 AGGGGTTTAGGG-TTTAGGGTTT
1 AGGGTTTTAGGGTTTTA-GGTTT
26686632 AGGGTTTTAGGGTTTTAGGTTTT
1 AGGGTTTTAGGGTTTTAGG-TTT
26686655 AGGGTTTTAGGGTTT
1 AGGGTTTTAGGGTTT
26686670 AAAACATTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
22 13 0.37
23 22 0.63
ACGTcount: A:0.13, C:0.00, G:0.40, T:0.47
Consensus pattern (22 bp):
AGGGTTTTAGGGTTTTAGGTTT
Found at i:26697412 original size:40 final size:40
Alignment explanation
Indices: 26697356--26697435 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
26697346 AGACTAAAAA
26697356 GAATCAAAATAAGAAGTATCTGACTCATAAGTTTTATATG
1 GAATCAAAATAAGAAGTATCTGACTCATAAGTTTTATATG
* *
26697396 GAATCAGAATATGAAGTATCTGACTCATAAGTTTTATATG
1 GAATCAAAATAAGAAGTATCTGACTCATAAGTTTTATATG
26697436 AACTATCATC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (40 bp):
GAATCAAAATAAGAAGTATCTGACTCATAAGTTTTATATG
Found at i:26703674 original size:42 final size:42
Alignment explanation
Indices: 26703627--26703710 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
26703617 AAATATTGGG
26703627 GTGAATGCAATTTGTTAATCTCTATTGTTACTATACTAGATC
1 GTGAATGCAATTTGTTAATCTCTATTGTTACTATACTAGATC
*
26703669 GTGAATGCAATTTGTTGATCTCTATTGTTACTATACTAGATC
1 GTGAATGCAATTTGTTAATCTCTATTGTTACTATACTAGATC
26703711 CTAGAAATAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.43
Consensus pattern (42 bp):
GTGAATGCAATTTGTTAATCTCTATTGTTACTATACTAGATC
Found at i:26705326 original size:20 final size:20
Alignment explanation
Indices: 26705286--26705326 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
26705276 ATTTTAATAA
*
26705286 TTATATATTTTTTACTATTT
1 TTATATATTTTTAACTATTT
26705306 TTATATATTTTTGAACT-TTT
1 TTATATATTTTT-AACTATTT
26705326 T
1 T
26705327 AAAATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.24, C:0.05, G:0.02, T:0.68
Consensus pattern (20 bp):
TTATATATTTTTAACTATTT
Found at i:26706885 original size:14 final size:14
Alignment explanation
Indices: 26706868--26706968 Score: 78
Period size: 14 Copynumber: 7.2 Consensus size: 14
26706858 ATATATATGC
*
26706868 ATTCATAGATACAT
1 ATTCATAGATACAG
*
26706882 ATTCATAGATGCAG
1 ATTCATAGATACAG
* *
26706896 ATTCATAGGTTA-GG
1 ATTCATA-GATACAG
*
26706910 ATTCATAGATACAT
1 ATTCATAGATACAG
* **
26706924 ATTCATAAATATGG
1 ATTCATAGATACAG
**
26706938 ATTCATAGATATGG
1 ATTCATAGATACAG
* *
26706952 ACTCATAGATGCAG
1 ATTCATAGATACAG
26706966 ATT
1 ATT
26706969 TATATACATG
Statistics
Matches: 67, Mismatches: 18, Indels: 4
0.75 0.20 0.04
Matches are distributed among these distances:
13 3 0.04
14 62 0.93
15 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.34
Consensus pattern (14 bp):
ATTCATAGATACAG
Found at i:26706958 original size:42 final size:42
Alignment explanation
Indices: 26706854--26706961 Score: 128
Period size: 42 Copynumber: 2.6 Consensus size: 42
26706844 GCAAATGTGA
* * * *
26706854 ATTCATATATATGCATTCATAGATACATATTCATAGATGCAG
1 ATTCATAGATATGGATTCATAGATACATATTCATAAATACAG
* **
26706896 ATTCATAGGT-TAGGATTCATAGATACATATTCATAAATATGG
1 ATTCATAGATAT-GGATTCATAGATACATATTCATAAATACAG
*
26706938 ATTCATAGATATGGACTCATAGAT
1 ATTCATAGATATGGATTCATAGAT
26706962 GCAGATTTAT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
41 1 0.02
42 53 0.96
43 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (42 bp):
ATTCATAGATATGGATTCATAGATACATATTCATAAATACAG
Found at i:26713405 original size:46 final size:45
Alignment explanation
Indices: 26713300--26713663 Score: 315
Period size: 46 Copynumber: 7.8 Consensus size: 45
26713290 ACATTATGAG
* *
26713300 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGT
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA-CA-T
* * *
26713349 -GCTAGTGTAAGACATGTTTGGGACATGCATTGGCCTCGAGACAT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACAT
* *
26713393 AAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATGAT
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGA-CAT
* *
26713440 AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGACGAGT
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGAC-A-T
* *
26713489 -GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGT
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACAT
* * * * *
26713533 AAACCAGTGGAAGACATGTCTGGTACATGCATC-GACTACGAGATGAT
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGA-CAT
* * * *
26713580 AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACAT-GAGATAT
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACAT
* * *
26713626 GATCTAGTGTAAGACCGTGTCTGGGACATGGCATCGGC
1 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
26713664 ACCTTACCCG
Statistics
Matches: 260, Mismatches: 38, Indels: 36
0.78 0.11 0.11
Matches are distributed among these distances:
44 2 0.01
45 6 0.02
46 118 0.45
47 93 0.36
48 38 0.15
49 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACAT
Found at i:26713499 original size:94 final size:93
Alignment explanation
Indices: 26713304--26713664 Score: 339
Period size: 94 Copynumber: 3.8 Consensus size: 93
26713294 TATGAGAGCC
* *
26713304 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATG-AGTGCTAGTGTAAGACATGTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CAAGATGTAGT-CTAGTGTAAGACATGTCT
* * *
26713368 GGGACATGCATTGGCCTCGAGAC-ATAAGCC
64 GGGACATGCATCGGCATCGAGACGAT-AGCT
26713398 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATGATAGTC-AGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAAGATG-TAGTCTAGTGTAAGA-CATGTC
26713460 TGGGACATGGCATCGGCATCGAGACGAGT-GCT
63 TGGGACAT-GCATCGGCATCGAGACGA-TAGCT
* * * ** * *
26713492 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTAAACCAGTGGAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACAAGATGTAGTCTAGTGTAAGACATGTCTG
* * *
26713555 GTACATGCATCGAC-TACGAGATGATAG-T
65 GGACATGCATCGGCAT-CGAGACGATAGCT
* ** * *
26713583 CAGTGTAAGACCATGTCTGGGACATGGCATCGACATGAGATAT-GATCTAGTGTAAGACCGTGTC
1 -AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAGATGTAG-TCTAGTGTAAGA-CATGTC
26713647 TGGGACATGGCATCGGCA
63 TGGGACAT-GCATCGGCA
26713665 CCTTACCCGC
Statistics
Matches: 223, Mismatches: 26, Indels: 34
0.79 0.09 0.12
Matches are distributed among these distances:
91 3 0.01
92 47 0.21
93 74 0.33
94 89 0.40
95 9 0.04
96 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (93 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAAGATGTAGTCTAGTGTAAGACATGTCTGG
GACATGCATCGGCATCGAGACGATAGCT
Found at i:26713513 original size:140 final size:139
Alignment explanation
Indices: 26713261--26713663 Score: 567
Period size: 140 Copynumber: 2.9 Consensus size: 139
26713251 GTGGGCTAGG
* * * * ** * *
26713261 GTAAGACGTGTCTAGGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGTCAGTGTAAGACCATGTCTGGGAC
* *
26713326 ATGGCATCGGCATCGAGATGAGTGCTAGTGTAAGACATGTTTGGGACATGCATTGGCCTCGAGAC
66 ATGGCATCGGCATCGAGA-GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC
*
26713391 ATAAGCCAGT
130 ATAAACCAGT
26713401 GTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGTCAGTGTAAGACCATGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGTCAGTGTAAGACCATGTCTGGGAC
26713466 ATGGCATCGGCATCGAGACGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC
66 ATGGCATCGGCATCGAGA-GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC
*
26713531 GTAAACCAGT
130 ATAAACCAGT
* * * *
26713541 GGAAGACATGTCTGGTACATGCATCGACTACGAGATGATAGTCAGTGTAAGACCATGTCTGGGAC
1 GTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGTCAGTGTAAGACCATGTCTGGGAC
* * *
26713606 ATGGCATCGACAT-GAGATA-TGATCTAGTGTAAGACCGTGTCTGGGACATGGCATCGGC
66 ATGGCATCGGCATCGAGAGAGTG--CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
26713664 ACCTTACCCG
Statistics
Matches: 239, Mismatches: 20, Indels: 7
0.90 0.08 0.03
Matches are distributed among these distances:
137 2 0.01
138 1 0.00
139 15 0.06
140 213 0.89
141 8 0.03
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (139 bp):
GTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGTCAGTGTAAGACCATGTCTGGGAC
ATGGCATCGGCATCGAGAGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACA
TAAACCAGT
Found at i:26715782 original size:46 final size:46
Alignment explanation
Indices: 26715691--26715909 Score: 169
Period size: 46 Copynumber: 4.7 Consensus size: 46
26715681 TGGGTAAAGT
26715691 GTTGATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA-
1 GTTGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCG-AG
* * *
26715739 TTTGATGCATGTCCCA-ACCATGTCTTACACTGGCT-TACGTCTCGAG
1 GTTGATGCATGTCCCAGA-CATGTCTTACACTGACTAT-CATCTCGAG
* * * * * *
26715785 GTTGATGCACGTCCCAGACATATCTTACACT-AGCTCTCTTCTCAAT
1 GTTGATGCATGTCCCAGACATGTCTTACACTGA-CTATCATCTCGAG
* * * * * *
26715831 GTCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTG
1 GTTGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCAT-CTCGAG
* *
26715879 GCTAATGCATGTCCCAGACATGTCTTACACT
1 GTTGATGCATGTCCCAGACATGTCTTACACT
26715910 AGTCCACAAA
Statistics
Matches: 137, Mismatches: 24, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.01
46 70 0.51
47 39 0.28
48 25 0.18
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (46 bp):
GTTGATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCGAG
Found at i:26722160 original size:40 final size:40
Alignment explanation
Indices: 26722066--26722210 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
26722056 TACTCGAATG
*
26722066 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
26722107 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
26722147 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
26722187 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
26722211 CTTGTGCGAG
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.67
41 28 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:26725951 original size:18 final size:18
Alignment explanation
Indices: 26725905--26725943 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
26725895 ATAATAGATC
* *
26725905 AGAAGAGTAAGAAAGTGA
1 AGAAGAGGAAGGAAGTGA
26725923 AGAAGAGGAAGGAAGTGA
1 AGAAGAGGAAGGAAGTGA
26725941 AGA
1 AGA
26725944 CTAGGAAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.38, T:0.08
Consensus pattern (18 bp):
AGAAGAGGAAGGAAGTGA
Found at i:26731514 original size:48 final size:48
Alignment explanation
Indices: 26731381--26731585 Score: 208
Period size: 48 Copynumber: 4.4 Consensus size: 48
26731371 GGTTATGTAC
* * *
26731381 GATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCATCTATATGT
1 GATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATATGT
* ** *
26731429 AATTTCGTGTAAGACC--G--T-AG-C-TAGGCTATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGAGACAT-GGC-ATTGGCATCGATATGT
** **
26731472 GATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGACCTAC
1 GATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATATGT
* * *
26731520 GATCCTACGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATGT
1 GATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATATGT
*
26731568 GATCCCACGTAAGACCAT
1 GATCCCATGTAAGACCAT
26731586 ATCCAGGATA
Statistics
Matches: 125, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 27 0.22
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 84 0.67
49 4 0.03
50 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (48 bp):
GATCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATCGATATGT
Found at i:26731604 original size:48 final size:48
Alignment explanation
Indices: 26731456--26731608 Score: 182
Period size: 48 Copynumber: 3.2 Consensus size: 48
26731446 TAGCTAGGCT
* *
26731456 ATTGGCATCGATATGTGATCCCATGTAAGACCATGT-CTGAGACATGGC
1 ATTGGCATCGATATGTGATCCCACGTAAGACCATGTCCAG-GACATGGC
** ** * **
26731504 ATTGGCATCGACCTACGATCCTACGTAAGACCATGTCTGGGACATGGC
1 ATTGGCATCGATATGTGATCCCACGTAAGACCATGTCCAGGACATGGC
* * *
26731552 ATTGGCATCGATATGTGATCCCACGTAAGACCATATCCAGGATATGGT
1 ATTGGCATCGATATGTGATCCCACGTAAGACCATGTCCAGGACATGGC
26731600 ATTGGCATC
1 ATTGGCATC
26731609 CTACCATGTG
Statistics
Matches: 86, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
48 85 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (48 bp):
ATTGGCATCGATATGTGATCCCACGTAAGACCATGTCCAGGACATGGC
Found at i:26736834 original size:20 final size:21
Alignment explanation
Indices: 26736791--26736836 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
26736781 ACTATTTTGT
26736791 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
26736811 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
26736830 TATGGGC
1 TATGGGC
26736837 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:26736905 original size:60 final size:59
Alignment explanation
Indices: 26736829--26736965 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
26736819 AACTGTGTTA
*
26736829 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTGATACTG
* * * *
26736889 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTGTTATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTGATACTG
26736949 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
26736966 GTTAACTCTG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.76
61 15 0.22
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTGATACTG
Found at i:26738995 original size:30 final size:30
Alignment explanation
Indices: 26738959--26739017 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
26738949 ATTTCACAAC
26738959 AACTTGATTCCATCAATTATTTTCAACTTT
1 AACTTGATTCCATCAATTATTTTCAACTTT
*
26738989 AACTTGATTCCATTAATTATTTTCAACTT
1 AACTTGATTCCATCAATTATTTTCAACTT
26739018 ACTTTTACCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.19, G:0.03, T:0.47
Consensus pattern (30 bp):
AACTTGATTCCATCAATTATTTTCAACTTT
Found at i:26757623 original size:84 final size:84
Alignment explanation
Indices: 26757478--26757635 Score: 221
Period size: 84 Copynumber: 1.9 Consensus size: 84
26757468 ATATGTGTTC
* * * *
26757478 TCGTGTAAGACCACGTCTTGGACATTGGTATCGATATGAGATTACGTGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCACGTCTTGGACAGTGGCATCGATATGAGATTACATGTAAGACCACGTCTGGGA
26757543 CATTGGCATCGTATTTGAT
66 CATTGGCATCGTATTTGAT
*
26757562 TCGTGTAAGACC-CTGTC-TGAGACAGTGGCATCGATATGTGATTACATGTAAGACCACGTCTGG
1 TCGTGTAAGACCAC-GTCTTG-GACAGTGGCATCGATATGAGATTACATGTAAGACCACGTCTGG
**
26757625 GATGTTGGCAT
64 GACATTGGCAT
26757636 TGTACAATAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
83 3 0.05
84 62 0.95
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (84 bp):
TCGTGTAAGACCACGTCTTGGACAGTGGCATCGATATGAGATTACATGTAAGACCACGTCTGGGA
CATTGGCATCGTATTTGAT
Found at i:26757634 original size:43 final size:43
Alignment explanation
Indices: 26757479--26757635 Score: 194
Period size: 43 Copynumber: 3.7 Consensus size: 43
26757469 TATGTGTTCT
* * *
26757479 CGTGTAAGACCACGTCTTGGACATTGGTATCGATATGAGATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTA
* *
26757522 CGTGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTA
* *
26757563 CGTGTAAGACC-CTGTCTGAGACAGTGGCATCGATATGTGATTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGATATGTGATTA
* **
26757606 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
26757636 TGTACAATAT
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
41 28 0.29
42 15 0.16
43 52 0.54
44 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTA
Found at i:26760640 original size:15 final size:16
Alignment explanation
Indices: 26760613--26760642 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26760603 ATAGTACGAG
26760613 ATATGAGAATGTATAT
1 ATATGAGAATGTATAT
26760629 ATATGA-AATGTATA
1 ATATGAGAATGTATA
26760643 ATCTTTACAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (16 bp):
ATATGAGAATGTATAT
Found at i:26763469 original size:12 final size:12
Alignment explanation
Indices: 26763452--26763478 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
26763442 ACACTAGCGT
26763452 CAACAATTCAAC
1 CAACAATTCAAC
26763464 CAACAATTCAAC
1 CAACAATTCAAC
26763476 CAA
1 CAA
26763479 TTTATTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.33, G:0.00, T:0.15
Consensus pattern (12 bp):
CAACAATTCAAC
Found at i:26765407 original size:29 final size:29
Alignment explanation
Indices: 26765349--26765435 Score: 131
Period size: 29 Copynumber: 3.0 Consensus size: 29
26765339 ATACCTGTAC
*
26765349 ATGGCTCATTAAGCCC-AATCACATTTAT
1 ATGGCTCATTAGGCCCAAATCACATTTAT
26765377 ATGGCTCATTAGGCCCAAATCACATTTAT
1 ATGGCTCATTAGGCCCAAATCACATTTAT
* * *
26765406 ATGGCCCATCAGGCCCAATTCACATTTAT
1 ATGGCTCATTAGGCCCAAATCACATTTAT
26765435 A
1 A
26765436 GTCATGCTCA
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
28 15 0.28
29 39 0.72
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (29 bp):
ATGGCTCATTAGGCCCAAATCACATTTAT
Found at i:26765673 original size:16 final size:16
Alignment explanation
Indices: 26765652--26765683 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26765642 TCAAACTTTT
26765652 AGCTTTTCAGCATTTC
1 AGCTTTTCAGCATTTC
*
26765668 AGCTTTTCGGCATTTC
1 AGCTTTTCAGCATTTC
26765684 GGCATTTCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.25, G:0.16, T:0.44
Consensus pattern (16 bp):
AGCTTTTCAGCATTTC
Found at i:26765692 original size:8 final size:8
Alignment explanation
Indices: 26765656--26765694 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
26765646 ACTTTTAGCT
*
26765656 TTTCAGCA
1 TTTCGGCA
* *
26765664 TTTCAGCT
1 TTTCGGCA
26765672 TTTCGGCA
1 TTTCGGCA
26765680 TTTCGGCA
1 TTTCGGCA
26765688 TTTCGGC
1 TTTCGGC
26765695 TTTTGCCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.13, C:0.26, G:0.21, T:0.41
Consensus pattern (8 bp):
TTTCGGCA
Found at i:26766894 original size:84 final size:84
Alignment explanation
Indices: 26766753--26766922 Score: 331
Period size: 84 Copynumber: 2.0 Consensus size: 84
26766743 CCTTTCTTAC
26766753 GCTACCATTCGGTCACAATTAATTATAAGGCTTATATGCCTAAGTCTCAGTTTTCTTAAAGAATA
1 GCTACCATTCGGTCACAATTAATTATAAGGCTTATATGCCTAAGTCTCAGTTTTCTTAAAGAATA
*
26766818 AAAATTTAAACTTTAGCAG
66 AAAATTTAAACTTTACCAG
26766837 GCTACCATTCGGTCACAATTAATTATAAGGCTTATATGCCTAAGTCTCAGTTTTCTTAAAGAATA
1 GCTACCATTCGGTCACAATTAATTATAAGGCTTATATGCCTAAGTCTCAGTTTTCTTAAAGAATA
26766902 AAAATTTAAACTTTACCAG
66 AAAATTTAAACTTTACCAG
26766921 GC
1 GC
26766923 CTGGGATTTG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 85 1.00
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (84 bp):
GCTACCATTCGGTCACAATTAATTATAAGGCTTATATGCCTAAGTCTCAGTTTTCTTAAAGAATA
AAAATTTAAACTTTACCAG
Found at i:26769479 original size:29 final size:29
Alignment explanation
Indices: 26769425--26769509 Score: 127
Period size: 29 Copynumber: 3.0 Consensus size: 29
26769415 ACCTGTATGC
* *
26769425 GGCCCACTAAGCCC-AATCACATTTATAT
1 GGCCCATTAGGCCCAAATCACATTTATAT
26769453 GGCCCATTAGGCCCAAATCACATTTATAT
1 GGCCCATTAGGCCCAAATCACATTTATAT
* *
26769482 GGCCCATCAGGCCCAATTCACATTTATA
1 GGCCCATTAGGCCCAAATCACATTTATA
26769510 GTCATGATTA
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 12 0.23
29 40 0.77
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.26
Consensus pattern (29 bp):
GGCCCATTAGGCCCAAATCACATTTATAT
Found at i:26769741 original size:8 final size:8
Alignment explanation
Indices: 26769730--26769774 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
26769720 ACTTTCAGCT
*
26769730 TTTCGGTA
1 TTTCGGCA
*
26769738 TTTCGGCT
1 TTTCGGCA
26769746 TTTCGGCA
1 TTTCGGCA
*
26769754 TTTTGGCA
1 TTTCGGCA
26769762 TTTCGGCA
1 TTTCGGCA
26769770 TTTCG
1 TTTCG
26769775 AGTTTTGTCG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.09, C:0.20, G:0.24, T:0.47
Consensus pattern (8 bp):
TTTCGGCA
Found at i:26769746 original size:16 final size:16
Alignment explanation
Indices: 26769722--26769774 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 16
26769712 GTAGTCAAAC
* *
26769722 TTTCAGCTTTTCGGTA
1 TTTCGGCTTTTCGGCA
26769738 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
* *
26769754 TTTTGGCATTTCGGCA
1 TTTCGGCTTTTCGGCA
26769770 TTTCG
1 TTTCG
26769775 AGTTTTGTCG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.09, C:0.21, G:0.23, T:0.47
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:26774154 original size:14 final size:14
Alignment explanation
Indices: 26774120--26774146 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26774110 GATTAATAAT
26774120 TGAATTTAACTAAA
1 TGAATTTAACTAAA
26774134 TGAATTTAACTAA
1 TGAATTTAACTAA
26774147 TATTATTTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.37
Consensus pattern (14 bp):
TGAATTTAACTAAA
Found at i:26776885 original size:60 final size:61
Alignment explanation
Indices: 26776792--26776921 Score: 156
Period size: 60 Copynumber: 2.1 Consensus size: 61
26776782 GATCTTAAAT
* * * * * ** * *
26776792 TAAAAAATTCAATAAATTTAGCTCTTAATATTTATAAAATTT-TTCATTTAGTTTTAATTC
1 TAAAAATTTCAATAAATTTAACTCTCAACATTTACAAAATTTATAAATTTAATTCTAATTC
26776852 TAAAAATTTCAATAAATTTAAC-CATCAACATTTACAAAATTTATAAATTTAATTCTAATTC
1 TAAAAATTTCAATAAATTTAACTC-TCAACATTTACAAAATTTATAAATTTAATTCTAATTC
26776913 TAAAAATTT
1 TAAAAATTT
26776922 TAAAAGGAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
59 1 0.02
60 35 0.59
61 23 0.39
ACGTcount: A:0.45, C:0.10, G:0.02, T:0.44
Consensus pattern (61 bp):
TAAAAATTTCAATAAATTTAACTCTCAACATTTACAAAATTTATAAATTTAATTCTAATTC
Found at i:26778738 original size:46 final size:46
Alignment explanation
Indices: 26778580--26778755 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
26778570 TCACTTGTGT
* * * * *
26778580 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-AACGA
* * * * *
26778626 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGACATAGAAACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAAACGA
* * *
26778674 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACG-A
* *
26778721 -AGCCAGTGTAAGACATGTCCGGAACATGCATCGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
26778756 TAAGCGATGT
Statistics
Matches: 104, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
46 56 0.54
47 26 0.25
48 21 0.20
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAAACGA
Found at i:26781893 original size:15 final size:15
Alignment explanation
Indices: 26781875--26781905 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26781865 GTTTATTTCT
26781875 TTAGAATCTTGATTC
1 TTAGAATCTTGATTC
26781890 TTAGAATCTTGATTC
1 TTAGAATCTTGATTC
26781905 T
1 T
26781906 AGTAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (15 bp):
TTAGAATCTTGATTC
Found at i:26785081 original size:21 final size:22
Alignment explanation
Indices: 26785057--26785108 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
26785047 TATACAAAAC
*
26785057 AAAATATACACATAATATA-TT
1 AAAATATACACATAATATACAT
* *
26785078 AAAATATATACATAATGTACAT
1 AAAATATACACATAATATACAT
26785100 AAAATATAC
1 AAAATATAC
26785109 GTATATACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 17 0.65
22 9 0.35
ACGTcount: A:0.58, C:0.10, G:0.02, T:0.31
Consensus pattern (22 bp):
AAAATATACACATAATATACAT
Found at i:26786743 original size:45 final size:45
Alignment explanation
Indices: 26786642--26786752 Score: 111
Period size: 45 Copynumber: 2.5 Consensus size: 45
26786632 CCCAGTGCAT
* * *
26786642 CTTGCTA-CTTTAATCTGCTCCATTACAGCTTTAGAGAAATAAGA
1 CTTGCTATCTTCAATCTGCTCCATTACAGCTTCAAAGAAATAAGA
* * * *
26786686 TTTGCTATCTTCAGTCTGCTCCACTTGCAGCTTCAAAGAGATAAGA
1 CTTGCTATCTTCAATCTGCTCCA-TTACAGCTTCAAAGAAATAAGA
*
26786732 CTTG-TGA-CTTCAATCTACTCC
1 CTTGCT-ATCTTCAATCTGCTCC
26786753 GCTGAAACTT
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
44 6 0.11
45 26 0.48
46 22 0.41
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.34
Consensus pattern (45 bp):
CTTGCTATCTTCAATCTGCTCCATTACAGCTTCAAAGAAATAAGA
Found at i:26787034 original size:42 final size:42
Alignment explanation
Indices: 26786884--26787034 Score: 126
Period size: 42 Copynumber: 3.5 Consensus size: 42
26786874 ATCTGCTCCA
* * * *
26786884 CTACTGCTTAGGGAGGTAAGATCTGTAAATTCAGCCTATTACC
1 CTACTGCTTAGGGAGTTAAGATCTGT-AATTCGGTCTGTTACC
* * * * *
26786927 CTACTGCTTAGGG-GTTTAAGGCTCTTTTACCTTCGATCTGTTTCC
1 CTACTGCTTAGGGAG-TTAA-GATC-TGTA-ATTCGGTCTGTTACC
* * *
26786972 CTACTACTTAGGGAGATAAGATCTGTAATTTGGTCTGTTACC
1 CTACTGCTTAGGGAGTTAAGATCTGTAATTCGGTCTGTTACC
26787014 CTACTGCTTAGGG-GTTTAAGA
1 CTACTGCTTAGGGAG-TTAAGA
26787035 CCCATTGCAT
Statistics
Matches: 83, Mismatches: 19, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
41 1 0.01
42 29 0.35
43 19 0.23
44 7 0.08
45 26 0.31
46 1 0.01
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.36
Consensus pattern (42 bp):
CTACTGCTTAGGGAGTTAAGATCTGTAATTCGGTCTGTTACC
Found at i:26787061 original size:44 final size:43
Alignment explanation
Indices: 26786925--26787070 Score: 118
Period size: 42 Copynumber: 3.3 Consensus size: 43
26786915 CAGCCTATTA
* * * *
26786925 CCCTACTGCTTAGGGGTTTAAGGCTCTTTTACCTTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGAC-C-CTTGCATTCGATCTGTTT
* * * * * * *
26786970 CCCTACTACTTAGGGAG-ATAAGA-TC-TGTAATTTGGTCTGTTA
1 CCCTACTGCTTAGGG-GTTTAAGACCCTTG-CATTCGATCTGTTT
26787012 CCCTACTGCTTAGGGGTTTAAGACCCATTGCATTCGATCTGTTT
1 CCCTACTGCTTAGGGGTTTAAGACCC-TTGCATTCGATCTGTTT
*
26787056 CCCTACTGATTAGGG
1 CCCTACTGCTTAGGG
26787071 TGATAAGATC
Statistics
Matches: 76, Mismatches: 19, Indels: 13
0.70 0.18 0.12
Matches are distributed among these distances:
41 2 0.03
42 28 0.37
43 1 0.01
44 24 0.32
45 20 0.26
46 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (43 bp):
CCCTACTGCTTAGGGGTTTAAGACCCTTGCATTCGATCTGTTT
Found at i:26787070 original size:86 final size:86
Alignment explanation
Indices: 26786827--26787081 Score: 275
Period size: 86 Copynumber: 2.9 Consensus size: 86
26786817 ATCTATAATT
* * * * * *
26786827 TTCAGCCTGTTACCCTGCTGCTTAGGGG-TCAAGGCTCATCGTCTTTGATCTG-CTCCACTACTG
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTG-CTTCGATCTGTTTCC-CTACTG
* *
26786890 CTTAGGGAGGTAAGATCTGTAAA
64 ATTAGGGAGATAAGATCTGTAAA
* ** *
26786913 TTCAGCCTATTACCCTACTGCTTAGGGGTTTAAGGCTCTTTTACCTTCGATCTGTTTCCCTACT-
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGC-CCATT-GCTTCGATCTGTTTCCCTACTG
26786977 ACTTAGGGAGATAAGATCTGT-AA
64 A-TTAGGGAGATAAGATCTGTAAA
** * *
26787000 TTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCATTGCATTCGATCTGTTTCCCTACTGA
1 TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGC-TTCGATCTGTTTCCCTACTGA
*
26787065 TTAGGGTGATAAGATCT
65 TTAGGGAGATAAGATCT
26787082 TTAGATCTTC
Statistics
Matches: 141, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
85 1 0.01
86 64 0.45
87 40 0.28
88 33 0.23
89 3 0.02
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (86 bp):
TTCAGCCTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATTGCTTCGATCTGTTTCCCTACTGAT
TAGGGAGATAAGATCTGTAAA
Found at i:26787078 original size:44 final size:41
Alignment explanation
Indices: 26786958--26787078 Score: 102
Period size: 44 Copynumber: 2.8 Consensus size: 41
26786948 CTCTTTTACC
*
26786958 TTCGATCTGTTTCCCTACT-ACTTAGGGAGATAAGATCTGTAA
1 TTCGATCTGTTTCCCTACTGA-TTAGGG-GATAAGACCTGTAA
* * * * * *
26787000 TTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGACCCAT-TGCA
1 TTCGATCTGTTTCCCTACTGATTAGGGG-ATAAGA-CC-TGT-AA
26787044 TTCGATCTGTTTCCCTACTGATTAGGGTGATAAGA
1 TTCGATCTGTTTCCCTACTGATTAGGG-GATAAGA
26787079 TCTTTAGATC
Statistics
Matches: 61, Mismatches: 12, Indels: 10
0.73 0.14 0.12
Matches are distributed among these distances:
41 1 0.02
42 27 0.44
43 2 0.03
44 30 0.49
45 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.36
Consensus pattern (41 bp):
TTCGATCTGTTTCCCTACTGATTAGGGGATAAGACCTGTAA
Found at i:26787106 original size:86 final size:85
Alignment explanation
Indices: 26786884--26787106 Score: 209
Period size: 86 Copynumber: 2.6 Consensus size: 85
26786874 ATCTGCTCCA
* * * * * * *
26786884 CTACTGCTTAGGGAGGTAAGATCTGTAAATTCAGCCTATTACCCTACTGCTTAGGGGTTTAAGGC
1 CTACTACTTAGGGAGATAAGATCTGT-AATTTAGTCT-GT-CCCCACTGCTTAGGGGTTTAAGAC
** *
26786949 TCTTTTACCTTCGATCTGTTTCC
63 TCCATTACATTCGATCTGTTTCC
* *
26786972 CTACTACTTAGGGAGATAAGATCTGTAATTTGGTCTGTTACCCTACTGCTTAGGGGTTTAAGAC-
1 CTACTACTTAGGGAGATAAGATCTGTAATTTAGTCTG-T-CCCCACTGCTTAGGGGTTTAAGACT
*
26787036 CCATTGCATTCGATCTGTTTCC
64 CCATTACATTCGATCTGTTTCC
* *
26787058 CTACTGA-TTAGGGTGATAAGATCTTTAGATCTTCAGTCTG-CCCCACTGC
1 CTACT-ACTTAGGGAGATAAGATCTGTA-AT-TT-AGTCTGTCCCCACTGC
26787107 GACTTCGGGG
Statistics
Matches: 115, Mismatches: 15, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
86 49 0.43
87 35 0.30
88 26 0.23
89 5 0.04
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (85 bp):
CTACTACTTAGGGAGATAAGATCTGTAATTTAGTCTGTCCCCACTGCTTAGGGGTTTAAGACTCC
ATTACATTCGATCTGTTTCC
Found at i:26787355 original size:43 final size:44
Alignment explanation
Indices: 26787262--26787517 Score: 132
Period size: 43 Copynumber: 5.9 Consensus size: 44
26787252 TAAAGCTCGA
* * * *
26787262 CCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTGTAAATTTAG
1 CCTGTTACCCTACTGCTTAGGGAGATAAGAGCTTGTAAATTTAG
* * *
26787306 CCTGTTACCCTACTGCTTAGGGAGATGAG-GCTTGTGAATTTGG
1 CCTGTTACCCTACTGCTTAGGGAGATAAGAGCTTGTAAATTTAG
* * * * ** * * **
26787349 CTTGTTACCCTATTGCTTAGGGGGTTAAGCCCAT-CATCTTT-G
1 CCTGTTACCCTACTGCTTAGGGAGATAAGAGCTTGTAAATTTAG
* * * * * * * *
26787391 ATCTGTTTCCCTACTGCTTGGGGTGATAGGATC-TGTATATTCAG
1 -CCTGTTACCCTACTGCTTAGGGAGATAAGAGCTTGTAAATTTAG
** * * *
26787435 CCTGTTACCCTACCACTTAGGG-GTTTAAG-G-TCTGTAATTTTGG
1 CCTGTTACCCTACTGCTTAGGGAG-ATAAGAGCT-TGTAAATTTAG
* * *
26787478 CTTATTACCCTACTGCTTAGGGAGTTAA-AGCTTGTAAATT
1 CCTGTTACCCTACTGCTTAGGGAGATAAGAGCTTGTAAATT
26787518 CATCGGTTCT
Statistics
Matches: 154, Mismatches: 48, Indels: 21
0.69 0.22 0.09
Matches are distributed among these distances:
42 3 0.02
43 121 0.79
44 30 0.19
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (44 bp):
CCTGTTACCCTACTGCTTAGGGAGATAAGAGCTTGTAAATTTAG
Found at i:26787456 original size:129 final size:130
Alignment explanation
Indices: 26787263--26787505 Score: 316
Period size: 129 Copynumber: 1.9 Consensus size: 130
26787253 AAAGCTCGAC
* * **
26787263 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTTGTAAATTTAGCCTGTTACCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGGGGATAAGATCTTGTAAATTCAGCCTGTTACCCTACCACTTAGGG
* * * *
26787328 AG-ATGAGG-CTTGTGAA-TTTGGCTTGTTACCCTATTGCTTAGGGGGTTAAGCCCATCATCTTT
66 -GTATAAGGTC-TGT-AATTTTGGCTTATTACCCTACTGCTTAGGGAGTTAAGCCCATCATCTTT
26787390 GAT
128 GAT
* *
26787393 CTGTTTCCCTACTGCTT-GGGGTGATAGGATC-TGTATATTCAGCCTGTTACCCTACCACTTAGG
1 CTGTTTCCCTACTGCTTAGGGG-GATAAGATCTTGTAAATTCAGCCTGTTACCCTACCACTTAGG
*
26787456 GGTTTAAGGTCTGTAATTTTGGCTTATTACCCTACTGCTTAGGGAGTTAA
65 GGTATAAGGTCTGTAATTTTGGCTTATTACCCTACTGCTTAGGGAGTTAA
26787506 AGCTTGTAAA
Statistics
Matches: 98, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
128 3 0.03
129 70 0.71
130 25 0.26
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (130 bp):
CTGTTTCCCTACTGCTTAGGGGGATAAGATCTTGTAAATTCAGCCTGTTACCCTACCACTTAGGG
GTATAAGGTCTGTAATTTTGGCTTATTACCCTACTGCTTAGGGAGTTAAGCCCATCATCTTTGAT
Found at i:26798681 original size:36 final size:36
Alignment explanation
Indices: 26798634--26798708 Score: 150
Period size: 36 Copynumber: 2.1 Consensus size: 36
26798624 TTTAAAAATG
26798634 ATCGAATAAATTAAAACGGACGTTAAGGATCCTCTC
1 ATCGAATAAATTAAAACGGACGTTAAGGATCCTCTC
26798670 ATCGAATAAATTAAAACGGACGTTAAGGATCCTCTC
1 ATCGAATAAATTAAAACGGACGTTAAGGATCCTCTC
26798706 ATC
1 ATC
26798709 TCGAAGTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (36 bp):
ATCGAATAAATTAAAACGGACGTTAAGGATCCTCTC
Found at i:26801770 original size:44 final size:44
Alignment explanation
Indices: 26801721--26801804 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
26801711 GTAAACCAAT
*
26801721 TACACTCCCTAAATATGATATCATAGGATGAATGTAGAGCTAGC
1 TACACTCCCTAAATATGATATCATAGGATGAACGTAGAGCTAGC
*
26801765 TACACTCCTTAAATATGATATCATAGGATGAACGTAGAGC
1 TACACTCCCTAAATATGATATCATAGGATGAACGTAGAGC
26801805 CACTAGGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (44 bp):
TACACTCCCTAAATATGATATCATAGGATGAACGTAGAGCTAGC
Found at i:26802126 original size:26 final size:26
Alignment explanation
Indices: 26802088--26802191 Score: 64
Period size: 26 Copynumber: 3.8 Consensus size: 26
26802078 TAATAATAAT
* *
26802088 TTTATTAAGAATTTTATTAAATTATA
1 TTTAATAATAATTTTATTAAATTATA
* * * *
26802114 TTTAATAATAATTATGTTAAAATATG
1 TTTAATAATAATTTTATTAAATTATA
* * * *
26802140 GTTAATTATTTACTATTTTTATTAAGTTATT
1 TTTAA-TA---A-TAATTTTATTAAATTATA
*
26802171 TTTAATAATAATCTTATTAAA
1 TTTAATAATAATTTTATTAAA
26802192 ATTTAATAAC
Statistics
Matches: 56, Mismatches: 17, Indels: 10
0.67 0.20 0.12
Matches are distributed among these distances:
26 34 0.61
27 3 0.05
30 3 0.05
31 16 0.29
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (26 bp):
TTTAATAATAATTTTATTAAATTATA
Found at i:26802381 original size:16 final size:16
Alignment explanation
Indices: 26802360--26802398 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
26802350 TGAATTACTG
26802360 ATTACAGCTCTATTCA
1 ATTACAGCTCTATTCA
* *
26802376 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCA
26802392 ATTACAG
1 ATTACAG
26802399 TGAACCAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCA
Found at i:26803096 original size:20 final size:20
Alignment explanation
Indices: 26803053--26803096 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
26803043 ATCAAATATT
* *
26803053 AAAAATTATGAAAAAAATAT
1 AAAAATCATGAAAAAAATAA
26803073 AAAAATCAT-AAAAAATATAA
1 AAAAATCATGAAAAAA-ATAA
26803093 AAAA
1 AAAA
26803097 GTGTACAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAAATCATGAAAAAAATAA
Found at i:26803420 original size:17 final size:17
Alignment explanation
Indices: 26803391--26803423 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26803381 TTTTATAAAA
26803391 TTTTACAATTTTTTATT
1 TTTTACAATTTTTTATT
26803408 TTTTA-AATATTTTTAT
1 TTTTACAAT-TTTTTAT
26803424 GAAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTACAATTTTTTATT
Found at i:26803479 original size:21 final size:20
Alignment explanation
Indices: 26803453--26803501 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
26803443 AATAGATTTT
*
26803453 AAATTTTTTAAATTTTTATTA
1 AAATTTTTT-AATTTTTATAA
** *
26803474 AAATTTAATAATTTTTCTAA
1 AAATTTTTTAATTTTTATAA
26803494 AAATTTTT
1 AAATTTTT
26803502 ATGTTTTATA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (20 bp):
AAATTTTTTAATTTTTATAA
Found at i:26803696 original size:90 final size:87
Alignment explanation
Indices: 26803535--26803750 Score: 276
Period size: 88 Copynumber: 2.4 Consensus size: 87
26803525 TTTAAATAAG
* * * *
26803535 AGCAGGAGCTTAATTGTTTTTTTGAAAAATTTTGAGGGTCTTTTTGATGCTTTTGAAAGTTCAAG
1 AGCAGG-GCTTAATTGTTTTTTTTAAAAAGTTTGAGGGCCTTTTTGATGATTTTGAAAGTTCAAG
26803600 TACTCAATTAAGTGAAAAAAAAA
65 TACTCAATTAAGTGAAAAAAAAA
*
26803623 AGCAGGGCTTAATTGCTTTTTTTTAAAGAAGTTTGAGGGCCTTTTTGATATATTTTGAAAGTTCA
1 AGCAGGGCTTAATTG-TTTTTTTTAAA-AAGTTTGAGGGCCTTTTTGAT-GATTTTGAAAGTTCA
* * *
26803688 AGTGCTCAATTGAGTGCAAAAAAAA
63 AGTACTCAATTAAGTGAAAAAAAAA
26803713 A--A-GGCTTAATTGTTTTTTTTTTGAAAAAGTTTGAGGGC
1 AGCAGGGCTTAATTG--TTTTTTTT-AAAAAGTTTGAGGGC
26803751 TATTTACACC
Statistics
Matches: 114, Mismatches: 9, Indels: 10
0.86 0.07 0.08
Matches are distributed among these distances:
87 19 0.17
88 37 0.32
89 22 0.19
90 36 0.32
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.38
Consensus pattern (87 bp):
AGCAGGGCTTAATTGTTTTTTTTAAAAAGTTTGAGGGCCTTTTTGATGATTTTGAAAGTTCAAGT
ACTCAATTAAGTGAAAAAAAAA
Found at i:26811801 original size:37 final size:37
Alignment explanation
Indices: 26811736--26811820 Score: 107
Period size: 37 Copynumber: 2.3 Consensus size: 37
26811726 CTTAGTGCCA
* *
26811736 TGGCGTGTTATCGAATGGATTAGCTCTTACAAGCATT
1 TGGCGTGTTTTCGAATGGATTAGATCTTACAAGCATT
* * * **
26811773 TGGCATGTTTTCGATTGGATTATATCTTATGAGCATT
1 TGGCGTGTTTTCGAATGGATTAGATCTTACAAGCATT
26811810 TGGCGTGTTTT
1 TGGCGTGTTTT
26811821 TAGTTGGATT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.20, C:0.13, G:0.25, T:0.42
Consensus pattern (37 bp):
TGGCGTGTTTTCGAATGGATTAGATCTTACAAGCATT
Found at i:26813631 original size:20 final size:19
Alignment explanation
Indices: 26813602--26813646 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
26813592 TTTCTTTTTC
*
26813602 TTTTTAATTTCCTTTATTT
1 TTTTTAATTTACTTTATTT
*
26813621 TTTTATAATTTATTTTATTT
1 TTTT-TAATTTACTTTATTT
26813641 TATTTT
1 T-TTTT
26813647 CTAATAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 4 0.18
20 15 0.68
21 3 0.14
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTAATTTACTTTATTT
Found at i:26817928 original size:72 final size:72
Alignment explanation
Indices: 26817847--26818023 Score: 205
Period size: 72 Copynumber: 2.5 Consensus size: 72
26817837 GGTCCGAGTG
*** *
26817847 CTGACTTTGTGTATAAACCCGTGAGTAACTTGCTGAGCGAGCA-TATCATGTTAATGCTTT-GGG
1 CTGACTTTGTGTATAAACCCGTGAGTAACTCAATGAGCGAGCATTA-CATGATAATGCTTTGGGG
*
26817910 TTCAGGGTA
65 TCCA-GGTA
** * *
26817919 CTGACTTTGTGTATAAATTCGTGAGTAGCTCAATGAGCGGGCATTACATGATAATGCTTTGGGGT
1 CTGACTTTGTGTATAAACCCGTGAGTAACTCAATGAGCGAGCATTACATGATAATGCTTTGGGGT
*
26817984 CCAGGTG
66 CCAGGTA
* * *
26817991 CTGACTTTGTGTACAAACCCTTGAGTAGCTCAA
1 CTGACTTTGTGTATAAACCCGTGAGTAACTCAA
26818024 ATGCGGGCAT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
72 81 0.91
73 8 0.09
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (72 bp):
CTGACTTTGTGTATAAACCCGTGAGTAACTCAATGAGCGAGCATTACATGATAATGCTTTGGGGT
CCAGGTA
Found at i:26822497 original size:43 final size:43
Alignment explanation
Indices: 26822406--26822488 Score: 114
Period size: 43 Copynumber: 1.9 Consensus size: 43
26822396 AGTAAGAATA
** *
26822406 TGGCATCGATATATGTGTGCAAGTAAGACCCAGTCTGGGATAG
1 TGGCATCGATATATGAATACAAGTAAGACCCAGTCTGGGATAG
*
26822449 TGGCATCGATATATGAATACATGTAAGA-CCACGTCTGGGA
1 TGGCATCGATATATGAATACAAGTAAGACCCA-GTCTGGGA
26822489 CGCTGGCATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 3 0.09
43 32 0.91
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (43 bp):
TGGCATCGATATATGAATACAAGTAAGACCCAGTCTGGGATAG
Found at i:26825374 original size:57 final size:58
Alignment explanation
Indices: 26825251--26825388 Score: 183
Period size: 57 Copynumber: 2.4 Consensus size: 58
26825241 TGTTGCTGAC
* * * **
26825251 AGGATTTATCCTGGACTGGTAATCCTGATATAGTCCCTTTCGAGCATATGTTACAATT
1 AGGATTTAGCCTGGACTGGTAATCCTAATATAGTCCCTTTCGAGCATATATTACAAAA
*
26825309 AGGATTTAGCCTGGACTGGTAATCCTAAT-TGAG-CTC-TTCTGAGCATATATTACAAAA
1 AGGATTTAGCCTGGACTGGTAATCCTAATAT-AGTCCCTTTC-GAGCATATATTACAAAA
26825366 AGGATTTAGCCTGGACTGGTAAT
1 AGGATTTAGCCTGGACTGGTAAT
26825389 TTTGTTATAT
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
56 3 0.04
57 40 0.56
58 29 0.40
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (58 bp):
AGGATTTAGCCTGGACTGGTAATCCTAATATAGTCCCTTTCGAGCATATATTACAAAA
Found at i:26840183 original size:15 final size:15
Alignment explanation
Indices: 26840165--26840216 Score: 63
Period size: 15 Copynumber: 3.4 Consensus size: 15
26840155 AATGTTAAAT
26840165 ATGAATTATTTAACA
1 ATGAATTATTTAACA
26840180 ATGAA-TACTGTTAA-A
1 ATGAATTA-T-TTAACA
26840195 TATGAATTATTTAACA
1 -ATGAATTATTTAACA
26840211 ATGAAT
1 ATGAAT
26840217 ACCATGTACT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
14 2 0.06
15 17 0.53
16 11 0.34
17 2 0.06
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.38
Consensus pattern (15 bp):
ATGAATTATTTAACA
Found at i:26840192 original size:31 final size:31
Alignment explanation
Indices: 26840157--26840218 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
26840147 TCTAATTGAA
26840157 TGTTAAATATGAATTATTTAACAATGAATAC
1 TGTTAAATATGAATTATTTAACAATGAATAC
26840188 TGTTAAATATGAATTATTTAACAATGAATAC
1 TGTTAAATATGAATTATTTAACAATGAATAC
26840219 CATGTACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (31 bp):
TGTTAAATATGAATTATTTAACAATGAATAC
Done.