Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 82 of 345
Found at i:26840199 original size:16 final size:15
Alignment explanation
Indices: 26840156--26840201 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
26840146 ATCTAATTGA
26840156 ATGTTAAATATGAATT
1 ATGTTAAATATGAA-T
26840172 AT-TTAACA-ATGAAT
1 ATGTTAA-ATATGAAT
26840186 ACTGTTAAATATGAAT
1 A-TGTTAAATATGAAT
26840202 TATTTAACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
14 2 0.08
15 11 0.42
16 13 0.50
ACGTcount: A:0.46, C:0.04, G:0.11, T:0.39
Consensus pattern (15 bp):
ATGTTAAATATGAAT
Found at i:26845534 original size:26 final size:26
Alignment explanation
Indices: 26845501--26845551 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26845491 AATATTTCTT
*
26845501 TTTTCTTTCCAGTGATAAGTTTTTCA
1 TTTTCTTTCCAATGATAAGTTTTTCA
26845527 TTTTCTTTCCAATGATAAGTTTTTC
1 TTTTCTTTCCAATGATAAGTTTTTC
26845552 TTACGCTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.16, G:0.10, T:0.55
Consensus pattern (26 bp):
TTTTCTTTCCAATGATAAGTTTTTCA
Found at i:26846261 original size:20 final size:19
Alignment explanation
Indices: 26846224--26846317 Score: 80
Period size: 19 Copynumber: 4.7 Consensus size: 19
26846214 TCAAAATATT
26846224 AAAAATTCATTAAAAATTAGAA
1 AAAAATT-A-TAAAAATT-GAA
* *
26846246 AAAAATTATAACAATTGTA
1 AAAAATTATAAAAATTGAA
*
26846265 AAAAATATATAAAAATTTGTA
1 AAAAAT-TATAAAAA-TTGAA
** * *
26846286 AAATTTTATAAAAATCGCA
1 AAAAATTATAAAAATTGAA
26846305 AAAAATTATAAAA
1 AAAAATTATAAAA
26846318 TTTTATAAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
19 22 0.36
20 22 0.36
21 10 0.16
22 7 0.11
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (19 bp):
AAAAATTATAAAAATTGAA
Found at i:26846268 original size:21 final size:21
Alignment explanation
Indices: 26846234--26846288 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
26846224 AAAAATTCAT
* *
26846234 TAAAAATTAG-AAAAAAATTA
1 TAAAAATTTGTAAAAAAAATA
* *
26846254 TAACAA-TTGTAAAAAATATA
1 TAAAAATTTGTAAAAAAAATA
26846274 TAAAAATTTGTAAAA
1 TAAAAATTTGTAAAA
26846289 TTTTATAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 2 0.07
20 18 0.64
21 8 0.29
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (21 bp):
TAAAAATTTGTAAAAAAAATA
Found at i:26846280 original size:10 final size:10
Alignment explanation
Indices: 26846223--26846326 Score: 54
Period size: 10 Copynumber: 10.4 Consensus size: 10
26846213 TTCAAAATAT
*
26846223 TAAAAATTCA
1 TAAAAATTTA
26846233 TTAAAAA-TTA
1 -TAAAAATTTA
* *
26846243 GAAAAAAATTA
1 -TAAAAATTTA
*
26846254 TAACAATTGTA
1 TAAAAATT-TA
*
26846265 -AAAAATATA
1 TAAAAATTTA
*
26846274 TAAAAATTTG
1 TAAAAATTTA
*
26846284 TAAAATTTTA
1 TAAAAATTTA
**
26846294 TAAAAATCGCA
1 TAAAAAT-TTA
26846305 -AAAAA-TTA
1 TAAAAATTTA
*
26846313 TAAAATTTTA
1 TAAAAATTTA
26846323 TAAA
1 TAAA
26846327 GTCATAAGAA
Statistics
Matches: 69, Mismatches: 18, Indels: 13
0.69 0.18 0.13
Matches are distributed among these distances:
8 1 0.01
9 6 0.09
10 50 0.72
11 12 0.17
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (10 bp):
TAAAAATTTA
Found at i:26846338 original size:29 final size:29
Alignment explanation
Indices: 26846187--26846343 Score: 92
Period size: 29 Copynumber: 5.4 Consensus size: 29
26846177 TAAAAACTAT
* * *
26846187 AAAATATTATTAAATTTTAATAAAAAT-TC
1 AAAAAATTATAAAATTTT-ATAAAAATCAC
* * * *
26846216 AAAATATTA-AAAA-TTCATTAAAAATTAGA
1 AAAAAATTATAAAATTTTA-TAAAAATCA-C
* *
26846245 AAAAAATTATAACAATTGTA-AAAAAT-AT
1 AAAAAATTATAA-AATTTTATAAAAATCAC
* *
26846273 ATAAAAATTTGTAAAATTTTATAAAAATCGC
1 A-AAAAA-TTATAAAATTTTATAAAAATCAC
* *
26846304 AAAAAATTATAAAATTTTAT-AAAGTCAT
1 AAAAAATTATAAAATTTTATAAAAATCAC
26846332 AAGAAAATTATA
1 AA-AAAATTATA
26846344 CAAAATGTAA
Statistics
Matches: 101, Mismatches: 16, Indels: 22
0.73 0.12 0.16
Matches are distributed among these distances:
26 1 0.01
27 9 0.09
28 11 0.11
29 51 0.50
30 24 0.24
31 3 0.03
32 2 0.02
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.34
Consensus pattern (29 bp):
AAAAAATTATAAAATTTTATAAAAATCAC
Found at i:26846600 original size:45 final size:48
Alignment explanation
Indices: 26846551--26846647 Score: 112
Period size: 45 Copynumber: 2.1 Consensus size: 48
26846541 TTTTTACGAT
26846551 TTTTATAAAAAAATT-CTAATTTTAAT-AAATTT-TTAATTTTTTAT-A
1 TTTTAT-AAAAAATTACTAATTTTAATAAAATTTATTAATTTTTTATAA
* * ** *
26846596 TTTTATTAAAATTTACTAATTTTTCTAAAATTTATTATTTTTTTATAA
1 TTTTATAAAAAATTACTAATTTTAATAAAATTTATTAATTTTTTATAA
26846644 TTTT
1 TTTT
26846648 TCTAATTTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
44 6 0.14
45 15 0.35
46 6 0.14
47 11 0.26
48 5 0.12
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (48 bp):
TTTTATAAAAAATTACTAATTTTAATAAAATTTATTAATTTTTTATAA
Found at i:26846624 original size:19 final size:19
Alignment explanation
Indices: 26846602--26846657 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
26846592 TATATTTTAT
26846602 TAAAATTTACTAATTTTTC
1 TAAAATTTACTAATTTTTC
* *
26846621 TAAAATTTA-TTATTTTTT
1 TAAAATTTACTAATTTTTC
* *
26846639 TATAATTTTTCTAATTTTT
1 TA-AAATTTACTAATTTTT
26846658 AATAAGAGCA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 9 0.30
19 14 0.47
20 7 0.23
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.62
Consensus pattern (19 bp):
TAAAATTTACTAATTTTTC
Found at i:26846637 original size:18 final size:17
Alignment explanation
Indices: 26846590--26846638 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
26846580 TTTTTAATTT
26846590 TTTA-TATTTTATTAAAA
1 TTTATTATTTT-TTAAAA
*
26846607 TTTACTAATTTTTCTAAAA
1 TTTA-TTATTTTT-TAAAA
26846626 TTTATTATTTTTT
1 TTTATTATTTTTT
26846639 TATAATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 5 0.19
18 8 0.30
19 14 0.52
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTATTATTTTTTAAAA
Found at i:26846645 original size:18 final size:18
Alignment explanation
Indices: 26846590--26846646 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
26846580 TTTTTAATTT
*
26846590 TTTA-TATTTTATTAAAA
1 TTTATTATTTTTTTAAAA
* *
26846607 TTTACTAATTTTTCTAAAA
1 TTTA-TTATTTTTTTAAAA
*
26846626 TTTATTATTTTTTTATAA
1 TTTATTATTTTTTTAAAA
26846644 TTT
1 TTT
26846647 TTCTAATTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
17 4 0.12
18 14 0.44
19 14 0.44
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTATTATTTTTTTAAAA
Found at i:26846760 original size:87 final size:87
Alignment explanation
Indices: 26846664--26846861 Score: 215
Period size: 88 Copynumber: 2.3 Consensus size: 87
26846654 TTTTAATAAG
* * *
26846664 AGCAGGGGCTTAATTACTTTTTTGGAA-AATTTTAAGG-GTCTTTTTAATATATTTTGAAAGTTC
1 AGCAGGGGCTTAATTACTTTTTT-GAAGAAGTTTAAGGACT-TTTTTAATATATTTTGAAAATTC
*
26846727 AAGTAC-CTAATTGAGTGA-AAAAAA
64 AAGTACTC-AATTAAGT-ACAAAAAA
* * * * *
26846751 AGCAGGGGCTTAATTGCCTTTTTTGAAGAAGTTTGAGGACTTTTTTGATGTATTTTGAAAATTTA
1 AGCAGGGGCTTAATT-ACTTTTTTGAAGAAGTTTAAGGACTTTTTTAATATATTTTGAAAATTCA
*
26846816 AGTATTCAATTAAGTACAAAAAA
65 AGTACTCAATTAAGTACAAAAAA
* *
26846839 AGAAGAGGCTTAATTACTTTTTT
1 AGCAGGGGCTTAATTACTTTTTT
26846862 TTTAAATTTT
Statistics
Matches: 93, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
87 26 0.28
88 65 0.70
89 2 0.02
ACGTcount: A:0.34, C:0.08, G:0.19, T:0.39
Consensus pattern (87 bp):
AGCAGGGGCTTAATTACTTTTTTGAAGAAGTTTAAGGACTTTTTTAATATATTTTGAAAATTCAA
GTACTCAATTAAGTACAAAAAA
Found at i:26848605 original size:55 final size:55
Alignment explanation
Indices: 26848462--26848668 Score: 201
Period size: 55 Copynumber: 3.8 Consensus size: 55
26848452 TTCCTTTTTA
* * *
26848462 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG-CTT-TA-T
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTGTAGT
** * * * *
26848514 GAACTCGCCATTGTCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTGTAGT
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTGTAGT
** * *
26848570 AGTTTATCAATGCCATGTCTTGACATGGTCTTACAT--GATTACCTTGCCTTGTAG-
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGGA-T-CCTTGCCTTGTAGT
* * *
26848624 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGGATCCTT
26848669 AAACACTAAT
Statistics
Matches: 123, Mismatches: 24, Indels: 13
0.77 0.15 0.08
Matches are distributed among these distances:
53 41 0.33
54 38 0.31
55 42 0.34
56 2 0.02
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (55 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGGATCCTTGCCTTGTAGT
Found at i:26852088 original size:46 final size:46
Alignment explanation
Indices: 26852038--26852213 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
26852028 TGGTTGAGCA
26852038 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26852084 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26852129 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26852177 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26852214 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26852194 original size:93 final size:93
Alignment explanation
Indices: 26852035--26852206 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
26852025 GGATGGTTGA
* *
26852035 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26852100 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
26852128 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
26852193 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
26852207 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26858391 original size:55 final size:54
Alignment explanation
Indices: 26858236--26858442 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 54
26858226 TTCCTTTTTA
* * *
26858236 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
26858289 AACTCACCATTGCCATGCCTTGGCATGGTTTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * *
26858343 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAG
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * *
26858398 AACTTACCAATGCGATGCCTTGGCATGGTCTTACTTGGCATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
26858443 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 45 0.37
54 36 0.30
55 41 0.34
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:26870718 original size:34 final size:35
Alignment explanation
Indices: 26870674--26870740 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
26870664 CAGTAAAATA
26870674 TTTTCCGTAAAATGATTT-CTGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
26870708 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
26870741 CTGGTGTTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:26872393 original size:15 final size:15
Alignment explanation
Indices: 26872373--26872407 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
26872363 TGTCACAACC
26872373 ACAACATGACATATG
1 ACAACATGACATATG
26872388 ACAACATGACATATG
1 ACAACATGACATATG
26872403 ACAAC
1 ACAAC
26872408 TAATTTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.49, C:0.23, G:0.11, T:0.17
Consensus pattern (15 bp):
ACAACATGACATATG
Found at i:26872445 original size:27 final size:28
Alignment explanation
Indices: 26872414--26872472 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
26872404 CAACTAATTT
26872414 ATAAAAAAT-AAAAATTATT-AAATTTTA
1 ATAAAAAATAAAAAATT-TTAAAATTTTA
26872441 AT-AAAAATAAAAAATTTTAAAATTTTA
1 ATAAAAAATAAAAAATTTTAAAATTTTA
26872468 A-AAAA
1 ATAAAA
26872473 TCGTAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (28 bp):
ATAAAAAATAAAAAATTTTAAAATTTTA
Found at i:26872447 original size:26 final size:26
Alignment explanation
Indices: 26872411--26872472 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 26
26872401 TGACAACTAA
26872411 TTTATAAAAAAT-AAAAATTATT-AAAT
1 TTTA-AAAAAATAAAAAATT-TTAAAAT
26872437 TTTAATAAAAATAAAAAATTTTAAAAT
1 TTTAA-AAAAATAAAAAATTTTAAAAT
26872464 TTTAAAAAA
1 TTTAAAAAA
26872473 TCGTAAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
25 1 0.03
26 16 0.48
27 16 0.48
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (26 bp):
TTTAAAAAAATAAAAAATTTTAAAAT
Found at i:26872555 original size:10 final size:10
Alignment explanation
Indices: 26872540--26872565 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
26872530 GTAACAAAAT
26872540 TATAAAGAAA
1 TATAAAGAAA
26872550 TATAAAGAAA
1 TATAAAGAAA
26872560 TATAAA
1 TATAAA
26872566 ATTCGTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (10 bp):
TATAAAGAAA
Found at i:26872780 original size:9 final size:9
Alignment explanation
Indices: 26872768--26872921 Score: 92
Period size: 9 Copynumber: 17.4 Consensus size: 9
26872758 TTTTTATGCA
26872768 TTTTATAAT
1 TTTTATAAT
*
26872777 TTTTAATGAT
1 TTTT-ATAAT
*
26872787 TTTTATAAA
1 TTTTATAAT
* *
26872796 GTTTACAAT
1 TTTTATAAT
*
26872805 TTTT-TATT
1 TTTTATAAT
*
26872813 TTTTTTACGAT
1 TTTTATA--AT
26872824 TTTTA-AAT
1 TTTTATAAT
26872832 TTTTA-AAT
1 TTTTATAAT
26872840 TTTT-T-AT
1 TTTTATAAT
26872847 TTTTA-ATAT
1 TTTTATA-AT
26872856 TTTTAT-AT
1 TTTTATAAT
*
26872864 TTTTATTAAA
1 TTTTA-TAAT
* *
26872874 ATTTATTAT
1 TTTTATAAT
*
26872883 TTTTATAAA
1 TTTTATAAT
*
26872892 TTTTATTGAT
1 TTTTA-TAAT
26872902 TTTTAT--T
1 TTTTATAAT
26872909 TTTTATAAT
1 TTTTATAAT
26872918 TTTT
1 TTTT
26872922 TTGCCACATA
Statistics
Matches: 111, Mismatches: 20, Indels: 28
0.70 0.13 0.18
Matches are distributed among these distances:
7 13 0.12
8 27 0.24
9 45 0.41
10 21 0.19
11 5 0.05
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (9 bp):
TTTTATAAT
Found at i:26872815 original size:35 final size:34
Alignment explanation
Indices: 26872775--26872862 Score: 99
Period size: 37 Copynumber: 2.6 Consensus size: 34
26872765 GCATTTTATA
26872775 ATTTTTAATGATTTTTATAAAGTTTACAATTTTTT
1 ATTTTTAATGATTTTTATAAAGTTTA-AATTTTTT
* * **
26872810 ATTTTTTTTACGATTTTTA-AATTTTTAAATTTTTT
1 A--TTTTTAATGATTTTTATAAAGTTTAAATTTTTT
26872845 ATTTTTAAT-ATTTTTATA
1 ATTTTTAATGATTTTTATA
26872863 TTTTTATTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
32 7 0.16
33 7 0.16
35 10 0.23
36 6 0.14
37 14 0.32
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (34 bp):
ATTTTTAATGATTTTTATAAAGTTTAAATTTTTT
Found at i:26872834 original size:7 final size:8
Alignment explanation
Indices: 26872822--26872868 Score: 60
Period size: 8 Copynumber: 5.9 Consensus size: 8
26872812 TTTTTTTACG
26872822 ATTTTTAA
1 ATTTTTAA
26872830 ATTTTTAA
1 ATTTTTAA
*
26872838 ATTTTT-T
1 ATTTTTAA
26872845 ATTTTTAA
1 ATTTTTAA
*
26872853 TATTTTTAT
1 -ATTTTTAA
26872862 ATTTTTA
1 ATTTTTA
26872869 TTAAAATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 6 0.18
8 21 0.62
9 7 0.21
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (8 bp):
ATTTTTAA
Found at i:26872834 original size:17 final size:16
Alignment explanation
Indices: 26872822--26872868 Score: 69
Period size: 16 Copynumber: 2.9 Consensus size: 16
26872812 TTTTTTTACG
*
26872822 ATTTTTAAATTTTTAA
1 ATTTTTATATTTTTAA
26872838 ATTTTT-TATTTTTAA
1 ATTTTTATATTTTTAA
26872853 TATTTTTATATTTTTA
1 -ATTTTTATATTTTTA
26872869 TTAAAATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
15 8 0.29
16 12 0.43
17 8 0.29
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTATATTTTTAA
Found at i:26872848 original size:15 final size:17
Alignment explanation
Indices: 26872768--26872868 Score: 73
Period size: 19 Copynumber: 5.8 Consensus size: 17
26872758 TTTTTATGCA
26872768 TTTTATAATTTTTAATGAT
1 TTTTAT-ATTTTTAAT-AT
**
26872787 TTTTATAAAGTTTACA-ATT
1 TTTTAT-ATTTTTA-ATA-T
* **
26872806 TTTTATTTTTTTTACGAT
1 TTTTA-TATTTTTAATAT
*
26872824 TTTTAAATTTTTAA-AT
1 TTTTATATTTTTAATAT
26872840 TTTT-TATTTTTAATAT
1 TTTTATATTTTTAATAT
26872856 TTTTATATTTTTA
1 TTTTATATTTTTA
26872869 TTAAAATTTA
Statistics
Matches: 66, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
15 8 0.12
16 12 0.18
17 14 0.21
18 7 0.11
19 23 0.35
20 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (17 bp):
TTTTATATTTTTAATAT
Found at i:26872880 original size:16 final size:17
Alignment explanation
Indices: 26872831--26872907 Score: 68
Period size: 19 Copynumber: 4.4 Consensus size: 17
26872821 GATTTTTAAA
*
26872831 TTTT-TAAATTTTTTAT
1 TTTTATAAATTTATTAT
* *
26872847 TTTTA-ATATTTTTATAT
1 TTTTATAAATTTAT-TAT
26872864 TTTTATTAAAATTTATTAT
1 TTTTA-T-AAATTTATTAT
26872883 TTTTATAAATTTTATTGAT
1 TTTTATAAA-TTTATT-AT
26872902 TTTTAT
1 TTTTAT
26872908 TTTTTATAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
16 11 0.22
17 11 0.22
18 7 0.14
19 16 0.31
20 6 0.12
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (17 bp):
TTTTATAAATTTATTAT
Found at i:26872885 original size:19 final size:19
Alignment explanation
Indices: 26872857--26872908 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 19
26872847 TTTTAATATT
26872857 TTTA-TATTTTTATTAAAA
1 TTTATTATTTTTATTAAAA
*
26872875 TTTATTATTTTTA-TAAAT
1 TTTATTATTTTTATTAAAA
26872893 TTTATTGATTTTTATT
1 TTTATT-ATTTTTATT
26872909 TTTTATAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 14 0.47
19 15 0.50
20 1 0.03
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (19 bp):
TTTATTATTTTTATTAAAA
Found at i:26880034 original size:33 final size:33
Alignment explanation
Indices: 26879992--26880059 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
26879982 CTCAAAGTTT
26879992 ATTCGTTGGATTGGCATAGACATTCCAACTCTA
1 ATTCGTTGGATTGGCATAGACATTCCAACTCTA
26880025 ATTCGTTGGATTGGCATAGACATTCCAACTCTA
1 ATTCGTTGGATTGGCATAGACATTCCAACTCTA
26880058 AT
1 AT
26880060 AAGTGACACT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.34
Consensus pattern (33 bp):
ATTCGTTGGATTGGCATAGACATTCCAACTCTA
Found at i:26882100 original size:12 final size:12
Alignment explanation
Indices: 26882083--26882116 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
26882073 CCGGCCCGCC
26882083 TATATTAATTTT
1 TATATTAATTTT
26882095 TATATT-ATTTT
1 TATATTAATTTT
26882106 TATA-TAATTTT
1 TATATTAATTTT
26882117 AAAATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.05
11 14 0.67
12 6 0.29
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
TATATTAATTTT
Found at i:26882256 original size:30 final size:29
Alignment explanation
Indices: 26882232--26882314 Score: 148
Period size: 30 Copynumber: 2.8 Consensus size: 29
26882222 CAAATGCATC
26882232 TAAAATAATAACAAAATTAACAAATATCTT
1 TAAAATAATAACAAAATTAACAAATATC-T
26882262 TAAAATAATAACAAAATTAACAAATATCTT
1 TAAAATAATAACAAAATTAACAAATATC-T
26882292 TAAAATAATAACAAAATTAACAA
1 TAAAATAATAACAAAATTAACAA
26882315 TAAAATAAGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.28
Consensus pattern (29 bp):
TAAAATAATAACAAAATTAACAAATATCT
Found at i:26884204 original size:27 final size:26
Alignment explanation
Indices: 26884174--26884241 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 26
26884164 GGATAGGTAT
26884174 ATAATATAATATGAAA-AATATATTTAC
1 ATAATATAATATGAAAGAATATA--TAC
* *
26884201 ATAAGATAATGT-AAAGAATATATAC
1 ATAATATAATATGAAAGAATATATAC
26884226 ATAACTAATAATATGA
1 ATAA-T-ATAATATGA
26884242 GAAGTACGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
25 7 0.21
26 3 0.09
27 22 0.67
28 1 0.03
ACGTcount: A:0.56, C:0.04, G:0.07, T:0.32
Consensus pattern (26 bp):
ATAATATAATATGAAAGAATATATAC
Found at i:26884558 original size:15 final size:15
Alignment explanation
Indices: 26884540--26884584 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
26884530 AAACTACTAC
*
26884540 ATAATAATATTAATA
1 ATAATAAAATTAATA
26884555 ATAATAAAATTAATA
1 ATAATAAAATTAATA
*
26884570 AT-ATAAAAATAATA
1 ATAATAAAATTAATA
26884584 A
1 A
26884585 GAGTATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAATAAAATTAATA
Found at i:26885224 original size:18 final size:20
Alignment explanation
Indices: 26885188--26885224 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
26885178 TTAATAATAC
*
26885188 ATATGTTTTTATGTGTTTTG
1 ATATGTTTTTATGTATTTTG
26885208 ATAT-TTTTTA-GTATTTT
1 ATATGTTTTTATGTATTTT
26885225 TGTGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 6 0.38
20 4 0.25
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.68
Consensus pattern (20 bp):
ATATGTTTTTATGTATTTTG
Found at i:26886542 original size:56 final size:56
Alignment explanation
Indices: 26886456--26886569 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
26886446 CAAAGCTTAA
*
26886456 AATGAGCTTTAAGATACAAAGGGGTTGGACTTGAGAATGAAAAATAACCAAATTAT
1 AATGAGCTTTAAGATACAAAGGGGTTGGACTTGAGAACGAAAAATAACCAAATTAT
*
26886512 AATGAGCTTTAAGATACAAAGGGGTTGGACTTGAGAACGAAAAATGACCAAATTAT
1 AATGAGCTTTAAGATACAAAGGGGTTGGACTTGAGAACGAAAAATAACCAAATTAT
26886568 AA
1 AA
26886570 ACTTTTCAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.45, C:0.10, G:0.22, T:0.24
Consensus pattern (56 bp):
AATGAGCTTTAAGATACAAAGGGGTTGGACTTGAGAACGAAAAATAACCAAATTAT
Found at i:26888397 original size:21 final size:20
Alignment explanation
Indices: 26888351--26888388 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26888341 GTGTCTAGGT
*
26888351 CGTGTGGAGGCTTACACACC
1 CGTGTGAAGGCTTACACACC
*
26888371 CATGTGAAGGC-TACACAC
1 CGTGTGAAGGCTTACACAC
26888389 ACCTGTGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.18
Consensus pattern (20 bp):
CGTGTGAAGGCTTACACACC
Found at i:26895466 original size:3 final size:3
Alignment explanation
Indices: 26895454--26895484 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
26895444 CATCAGGGAC
26895454 CAT C-T CAT CAT CAT CAT CAT CAT CAT CAT CA
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CA
26895485 AAGAACTCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.32, C:0.35, G:0.00, T:0.32
Consensus pattern (3 bp):
CAT
Found at i:26897594 original size:3 final size:3
Alignment explanation
Indices: 26897586--26897618 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
26897576 CCTAAAACTC
26897586 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26897619 TTTTTATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26897970 original size:29 final size:28
Alignment explanation
Indices: 26897926--26898000 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 28
26897916 ATTTATAAAA
* *
26897926 ATAAAAAATATTAAAAATCAT-ATAAATT
1 ATAAAAATTATAAAAAAT-ATAATAAATT
26897954 CATAAAAATTATAAAAAAATATAATAAATT
1 -ATAAAAATTAT-AAAAAATATAATAAATT
*
26897984 TTAACAAATTATAAAAA
1 ATAA-AAATTATAAAAA
26898001 TTACAAAACT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 20 0.50
30 20 0.50
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (28 bp):
ATAAAAATTATAAAAAATATAATAAATT
Found at i:26897981 original size:30 final size:30
Alignment explanation
Indices: 26897938--26898000 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
26897928 AAAAAATATT
26897938 AAAAATCATATAAATTCATAA-AAATTATAA
1 AAAAATCATATAAATT-ATAACAAATTATAA
*
26897968 AAAAAT-ATAATAAATTTTAACAAATTATAA
1 AAAAATCAT-ATAAATTATAACAAATTATAA
26897998 AAA
1 AAA
26898001 TTACAAAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
29 5 0.17
30 25 0.83
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (30 bp):
AAAAATCATATAAATTATAACAAATTATAA
Found at i:26898044 original size:22 final size:22
Alignment explanation
Indices: 26898014--26898065 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
26898004 CAAAACTAAC
*
26898014 AAAACATATTTATAA-TTTTATA
1 AAAATATATTTA-AACTTTTATA
26898036 AAAATATA-TTAAACTTTTATA
1 AAAATATATTTAAACTTTTATA
26898057 AAAAT-TATT
1 AAAATATATT
26898066 AAAATTCATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 4 0.15
21 16 0.59
22 7 0.26
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAATATATTTAAACTTTTATA
Found at i:26898053 original size:21 final size:20
Alignment explanation
Indices: 26898029--26898068 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
26898019 ATATTTATAA
26898029 TTTTATAAAAATATATTAAAC
1 TTTTATAAAAAT-TATTAAAC
26898050 TTTTATAAAAATTATTAAA
1 TTTTATAAAAATTATTAAA
26898069 ATTCATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
TTTTATAAAAATTATTAAAC
Found at i:26898112 original size:9 final size:9
Alignment explanation
Indices: 26897918--26898100 Score: 75
Period size: 10 Copynumber: 19.0 Consensus size: 9
26897908 CATAAAATAT
26897918 TTATAAAAA
1 TTATAAAAA
26897927 -TA-AAAAA
1 TTATAAAAA
26897934 -TATTAAAAA
1 TTA-TAAAAA
* *
26897943 TCATATAAA
1 TTATAAAAA
26897952 TTCATAAAAA
1 TT-ATAAAAA
26897962 TTATAAAAAA
1 TTAT-AAAAA
*
26897972 ATATAATAAA
1 TTATAA-AAA
*
26897982 TTTTAACAAA
1 TTATAA-AAA
26897992 TTATAAAAA
1 TTATAAAAA
* *
26898001 TTACAAAAC
1 TTATAAAAA
* *
26898010 TAACAAAACA
1 TTATAAAA-A
* **
26898020 TATTTATAATT
1 T-TATA-AAAA
26898031 TTATAAAAA
1 TTATAAAAA
**
26898040 TATATTAAACTT
1 T-TA-TAAA-AA
26898052 TTATAAAAA
1 TTATAAAAA
*
26898061 TTATTAAAA
1 TTATAAAAA
*
26898070 TTCATATAAAC
1 TT-ATA-AAAA
26898081 TTATAAAAAA
1 TTAT-AAAAA
26898091 TATATAAAAA
1 T-TATAAAAA
26898101 AAATTATAAA
Statistics
Matches: 129, Mismatches: 29, Indels: 31
0.68 0.15 0.16
Matches are distributed among these distances:
7 7 0.05
8 2 0.02
9 45 0.35
10 55 0.43
11 17 0.13
12 3 0.02
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:26898545 original size:20 final size:19
Alignment explanation
Indices: 26898522--26898568 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
26898512 GTTTATATCA
26898522 TTTTTAATTTTATTTA-ATAT
1 TTTTTAATTTT-TTTACA-AT
26898542 TTTTTATATTTTTTTACAAT
1 TTTTTA-ATTTTTTTACAAT
26898562 TTTTTAA
1 TTTTTAA
26898569 GAGTTCTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 1 0.04
20 18 0.72
21 6 0.24
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTTAATTTTTTTACAAT
Found at i:26898648 original size:9 final size:9
Alignment explanation
Indices: 26898636--26898744 Score: 55
Period size: 9 Copynumber: 11.8 Consensus size: 9
26898626 AATTTATTAG
26898636 ATTTTTTAT
1 ATTTTTTAT
*
26898645 ATTTTTGAT
1 ATTTTTTAT
26898654 ATTTTTTAT
1 ATTTTTTAT
26898663 AGTTTTTT-T
1 A-TTTTTTAT
*
26898672 ATGAATTTTA-
1 AT--TTTTTAT
26898682 A-TTTTTA-
1 ATTTTTTAT
* *
26898689 ATGTTTAAT
1 ATTTTTTAT
**
26898698 AACTTTTAT
1 ATTTTTTAT
*
26898707 ATTTTTGATAA
1 ATTTTT--TAT
26898718 ATTTTTTGAT
1 ATTTTTT-AT
*
26898728 ATCCTTTTAT
1 AT-TTTTTAT
26898738 ATTTTTT
1 ATTTTTT
26898745 TTTATATCTA
Statistics
Matches: 75, Mismatches: 15, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
7 6 0.08
8 5 0.07
9 34 0.45
10 18 0.24
11 12 0.16
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (9 bp):
ATTTTTTAT
Found at i:26898687 original size:29 final size:30
Alignment explanation
Indices: 26898628--26898687 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
26898618 TTTTTATTAA
* *
26898628 TTTATTAGATTTTTTATATTTTTGATATTT
1 TTTATTAGATTTTTTATAATTTTAATATTT
*
26898658 TTTA-TAGTTTTTTTATGAATTTTAAT-TTT
1 TTTATTAGATTTTTTAT-AATTTTAATATTT
26898687 T
1 T
26898688 AATGTTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (30 bp):
TTTATTAGATTTTTTATAATTTTAATATTT
Found at i:26898758 original size:21 final size:23
Alignment explanation
Indices: 26898719--26898765 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
26898709 TTTTGATAAA
*
26898719 TTTTTTGATATCCTTTTAT-ATT
1 TTTTTTGATATCCTATTATGATT
*
26898741 TTTTTTTATAT-CTATTATGATT
1 TTTTTTGATATCCTATTATGATT
26898763 TTT
1 TTT
26898766 ATAATTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.19, C:0.06, G:0.04, T:0.70
Consensus pattern (23 bp):
TTTTTTGATATCCTATTATGATT
Found at i:26905733 original size:28 final size:30
Alignment explanation
Indices: 26905702--26905764 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 30
26905692 ATGTGAAATC
*
26905702 AAGAAAATTA-AAGGGACATTTTTAA-AGA
1 AAGAAAATTATAACGGACATTTTTAATAGA
26905730 AAG--AATTATAACGGACATTTTTAATAGA
1 AAGAAAATTATAACGGACATTTTTAATAGA
*
26905758 AATAAAA
1 AAGAAAA
26905765 GAACGGAGGA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
26 5 0.17
27 14 0.48
28 8 0.28
30 2 0.07
ACGTcount: A:0.54, C:0.05, G:0.14, T:0.27
Consensus pattern (30 bp):
AAGAAAATTATAACGGACATTTTTAATAGA
Found at i:26905747 original size:27 final size:27
Alignment explanation
Indices: 26905707--26905759 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
26905697 AAATCAAGAA
*
26905707 AATTAAAGGGACATTTTTAA-AGAAAG
1 AATTAAACGGACATTTTTAATAGAAAG
26905733 AATTATAACGGACATTTTTAATAGAAA
1 AATTA-AACGGACATTTTTAATAGAAA
26905760 TAAAAGAACG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 5 0.21
27 14 0.58
28 5 0.21
ACGTcount: A:0.49, C:0.06, G:0.15, T:0.30
Consensus pattern (27 bp):
AATTAAACGGACATTTTTAATAGAAAG
Found at i:26905769 original size:27 final size:27
Alignment explanation
Indices: 26905715--26905771 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
26905705 AAAATTAAAG
* *
26905715 GGACATTTTTAAAGAAAGAATTATAAC
1 GGACATTTTTAAAGAAAGAATAAGAAC
*
26905742 GGACATTTTTAATAGAAATAA-AAGAAC
1 GGACATTTTTAA-AGAAAGAATAAGAAC
26905769 GGA
1 GGA
26905772 GGACCAAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.49, C:0.07, G:0.18, T:0.26
Consensus pattern (27 bp):
GGACATTTTTAAAGAAAGAATAAGAAC
Found at i:26910193 original size:3 final size:3
Alignment explanation
Indices: 26910187--26910215 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26910177 TATTATTATT
26910187 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
26910216 TCCATTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:26923908 original size:42 final size:43
Alignment explanation
Indices: 26923830--26923969 Score: 176
Period size: 43 Copynumber: 3.3 Consensus size: 43
26923820 AAAAAACGCT
26923830 GCTAAAAGTCATGATCTTTAGCGGCGC-TTTCTCCACAAACACC
1 GCTAAAAGTCATGATCTTTAGCGGCGCTTTTC-CCACAAACACC
* * * *
26923873 GCTAAAGGTCATG-GCTTTAGCGGCTCTTTTCCCACAAACGCC
1 GCTAAAAGTCATGATCTTTAGCGGCGCTTTTCCCACAAACACC
* * * * *
26923915 GCTAAAAGCCATGTTCATTAGCGGCGCTTTTCCCAAAAACTCC
1 GCTAAAAGTCATGATCTTTAGCGGCGCTTTTCCCACAAACACC
26923958 GCTAAAAGTCAT
1 GCTAAAAGTCAT
26923970 AAAATTTTAA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
42 32 0.39
43 51 0.61
ACGTcount: A:0.27, C:0.29, G:0.18, T:0.26
Consensus pattern (43 bp):
GCTAAAAGTCATGATCTTTAGCGGCGCTTTTCCCACAAACACC
Found at i:26924171 original size:16 final size:17
Alignment explanation
Indices: 26924111--26924188 Score: 58
Period size: 17 Copynumber: 4.7 Consensus size: 17
26924101 TATCAAATTA
*
26924111 AAATAAAAATAAAAATAT
1 AAAT-AAAATATAAATAT
*
26924129 AGAATCAAAA-CTAAA-AT
1 A-AAT-AAAATATAAATAT
26924146 AAAT--AATATAAAT-T
1 AAATAAAATATAAATAT
* *
26924160 AGATTAAATATAAATAT
1 AAATAAAATATAAATAT
26924177 AAATAAAATATA
1 AAATAAAATATA
26924189 GCAAGTCTTT
Statistics
Matches: 47, Mismatches: 7, Indels: 13
0.70 0.10 0.19
Matches are distributed among these distances:
13 2 0.04
14 8 0.17
16 12 0.26
17 14 0.30
18 4 0.09
19 7 0.15
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.27
Consensus pattern (17 bp):
AAATAAAATATAAATAT
Found at i:26924948 original size:15 final size:15
Alignment explanation
Indices: 26924928--26924956 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26924918 AAATGAATAT
26924928 TAGCAACAAATTATG
1 TAGCAACAAATTATG
26924943 TAGCAACAAATTAT
1 TAGCAACAAATTAT
26924957 AAATTGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.14, G:0.10, T:0.28
Consensus pattern (15 bp):
TAGCAACAAATTATG
Found at i:26928525 original size:2 final size:2
Alignment explanation
Indices: 26928518--26928542 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26928508 TCATAAGAAA
26928518 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
26928543 GAAATACCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:26929933 original size:7 final size:7
Alignment explanation
Indices: 26929921--26929948 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
26929911 ATATGGATTA
26929921 AAATATT
1 AAATATT
26929928 AAATATT
1 AAATATT
26929935 AAATATT
1 AAATATT
26929942 AAATATT
1 AAATATT
26929949 TAAGTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AAATATT
Found at i:26929972 original size:7 final size:7
Alignment explanation
Indices: 26929962--26930028 Score: 100
Period size: 7 Copynumber: 9.6 Consensus size: 7
26929952 GTATTTTATA
26929962 TTTTAAT
1 TTTTAAT
26929969 TTTTAAT
1 TTTTAAT
26929976 TTTTAAT
1 TTTTAAT
*
26929983 TTTTACT
1 TTTTAAT
*
26929990 TTTTACT
1 TTTTAAT
26929997 TTTTAATT
1 TTTTAA-T
26930005 TTTTAAT
1 TTTTAAT
26930012 TTTTAA-
1 TTTTAAT
26930018 TTTTAAT
1 TTTTAAT
26930025 TTTT
1 TTTT
26930029 TTGAAGATTT
Statistics
Matches: 56, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
6 6 0.11
7 43 0.77
8 7 0.12
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTAAT
Found at i:26929979 original size:21 final size:21
Alignment explanation
Indices: 26929955--26930021 Score: 82
Period size: 21 Copynumber: 3.1 Consensus size: 21
26929945 TATTTAAGTA
26929955 TTTTATATTTTAATTTTTAAT
1 TTTTATATTTTAATTTTTAAT
* *
26929976 TTTTA-ATTTTTACTTTTTACT
1 TTTTATA-TTTTAATTTTTAAT
*
26929997 TTTTAATTTTTTAATTTTTAAT
1 TTTT-ATATTTTAATTTTTAAT
26930019 TTT
1 TTT
26930022 AATTTTTTTG
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 21 0.55
22 16 0.42
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (21 bp):
TTTTATATTTTAATTTTTAAT
Found at i:26930047 original size:9 final size:8
Alignment explanation
Indices: 26929940--26930054 Score: 59
Period size: 7 Copynumber: 14.9 Consensus size: 8
26929930 ATATTAAATA
*
26929940 TTAAATAT
1 TTAAATTT
*
26929948 TTAAGTATT
1 TTAAAT-TT
*
26929957 TTATA-TT
1 TTAAATTT
26929964 TT-AATTT
1 TTAAATTT
26929971 TT-AATTT
1 TTAAATTT
26929978 TT-AATTT
1 TTAAATTT
*
26929985 TT-ACTTT
1 TTAAATTT
*
26929992 TT-ACTTT
1 TTAAATTT
26929999 TT-AATTT
1 TTAAATTT
*
26930006 TTTAATTT
1 TTAAATTT
26930014 TT-AA-TT
1 TTAAATTT
*
26930020 TTAATTTTT
1 TTAA-ATTT
26930029 TTGAAGATTT
1 TT-AA-ATTT
26930039 TTATAATTT
1 TTA-AATTT
26930048 TTAAATT
1 TTAAATT
26930055 ATCGTATAAA
Statistics
Matches: 89, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
6 5 0.06
7 44 0.49
8 16 0.18
9 16 0.18
10 8 0.09
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.66
Consensus pattern (8 bp):
TTAAATTT
Found at i:26930393 original size:37 final size:37
Alignment explanation
Indices: 26930340--26930470 Score: 190
Period size: 37 Copynumber: 3.5 Consensus size: 37
26930330 CTATGCAGCA
*
26930340 GATGCACAGGGCGAAGGCGATGGAGGAGATGGGTTGC
1 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
* * *
26930377 GATGCACGGGGTGAAGGCAATGGAGGAGATGGTTTGC
1 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
* * *
26930414 GATGCACGGGGCGAAGGTGATGGAGGGGATGGGTTGT
1 GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
*
26930451 GATGCATGGGGCGAAGGCGA
1 GATGCACGGGGCGAAGGCGA
26930471 CAAACGAAAA
Statistics
Matches: 82, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 82 1.00
ACGTcount: A:0.23, C:0.11, G:0.50, T:0.16
Consensus pattern (37 bp):
GATGCACGGGGCGAAGGCGATGGAGGAGATGGGTTGC
Found at i:26930801 original size:24 final size:25
Alignment explanation
Indices: 26930774--26930821 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
26930764 TATCAATTTT
26930774 TTTAAATCT-AATA-TTTTAAATATG
1 TTTAAAT-TAAATATTTTTAAATATG
*
26930798 TTTAGATTAAATATTTTTAAATAT
1 TTTAAATTAAATATTTTTAAATAT
26930822 AAAAGCATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 10 0.48
25 10 0.48
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (25 bp):
TTTAAATTAAATATTTTTAAATATG
Found at i:26930940 original size:18 final size:16
Alignment explanation
Indices: 26930917--26930958 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
26930907 TTTCTCTTAA
26930917 ATAATTTAAACTATATT
1 ATAATTTAAA-TATATT
*
26930934 CATAATTTTAATATATT
1 -ATAATTTAAATATATT
26930951 A-AATTTAA
1 ATAATTTAA
26930959 TATTATCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 6 0.27
16 1 0.05
17 6 0.27
18 9 0.41
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (16 bp):
ATAATTTAAATATATT
Found at i:26931069 original size:7 final size:7
Alignment explanation
Indices: 26931023--26931090 Score: 66
Period size: 7 Copynumber: 9.7 Consensus size: 7
26931013 ACTAATTAAT
26931023 CTAAACC
1 CTAAACC
*
26931030 CTAACCC
1 CTAAACC
26931037 CT-AACC
1 CTAAACC
*
26931043 CTTAACC
1 CTAAACC
*
26931050 CTTAACC
1 CTAAACC
26931057 CTTAAACC
1 C-TAAACC
26931065 CTAAACC
1 CTAAACC
* *
26931072 ATAAAAC
1 CTAAACC
*
26931079 ATAAACC
1 CTAAACC
26931086 CTAAA
1 CTAAA
26931091 TTTCTACCCC
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
6 5 0.10
7 41 0.79
8 6 0.12
ACGTcount: A:0.43, C:0.38, G:0.00, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:26931416 original size:15 final size:15
Alignment explanation
Indices: 26931393--26931427 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
26931383 CTACCCATGG
* *
26931393 CCATTAAACCTTAAA
1 CCATAAAACCCTAAA
26931408 CCATAAAACCCTAAA
1 CCATAAAACCCTAAA
26931423 CCATA
1 CCATA
26931428 GACCTTAGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (15 bp):
CCATAAAACCCTAAA
Found at i:26931637 original size:46 final size:45
Alignment explanation
Indices: 26931571--26931686 Score: 153
Period size: 46 Copynumber: 2.5 Consensus size: 45
26931561 ATGTTTTTTG
*
26931571 GGGTTTAGGGTTTTAAGGGTTATAGATTAATGTTTAGTG-TATTTA
1 GGGTTTAGGGTTTTAGGGGTTATAGATTAATGTTTA-TGATATTTA
* * * *
26931616 GGGTTTAAGGATTTTAGGGGTTATAGATTAGTGTTTATGATTTTTTT
1 GGGTTT-AGGGTTTTAGGGGTTATAGATTAATGTTTATGA-TATTTA
26931663 GGGTTTAGGGTTTTAGGGGTTATA
1 GGGTTTAGGGTTTTAGGGGTTATA
26931687 TGACTTTTTG
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
45 8 0.13
46 44 0.71
47 10 0.16
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (45 bp):
GGGTTTAGGGTTTTAGGGGTTATAGATTAATGTTTATGATATTTA
Found at i:26932813 original size:10 final size:11
Alignment explanation
Indices: 26932785--26932812 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
26932775 CCATTTTGTC
26932785 CCTTTTTGGCT
1 CCTTTTTGGCT
26932796 CCTTTTTGGCT
1 CCTTTTTGGCT
26932807 CCTTTT
1 CCTTTT
26932813 GACTCTTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.29, G:0.14, T:0.57
Consensus pattern (11 bp):
CCTTTTTGGCT
Found at i:26934694 original size:12 final size:12
Alignment explanation
Indices: 26934673--26934712 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
26934663 AGAAAATAAT
*
26934673 AAAATTGAAATA
1 AAAATAGAAATA
26934685 AAAATAGAAATA
1 AAAATAGAAATA
* *
26934697 AAAAGAAAAATA
1 AAAATAGAAATA
26934709 AAAA
1 AAAA
26934713 GATAAGAGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (12 bp):
AAAATAGAAATA
Found at i:26941885 original size:25 final size:25
Alignment explanation
Indices: 26941851--26941898 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
26941841 CTAAAAGAGC
26941851 TCATGGGCTCTGTTGGCACCTTAGT
1 TCATGGGCTCTGTTGGCACCTTAGT
26941876 TCATGGGCTCTGTTGGCACCTTA
1 TCATGGGCTCTGTTGGCACCTTA
26941899 CTCATCACAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.12, C:0.25, G:0.27, T:0.35
Consensus pattern (25 bp):
TCATGGGCTCTGTTGGCACCTTAGT
Found at i:26944422 original size:56 final size:56
Alignment explanation
Indices: 26944351--26944463 Score: 181
Period size: 56 Copynumber: 2.0 Consensus size: 56
26944341 GATTGAGACA
* *
26944351 AATTTGATGAGATTTTATTTATTTCTTTCTTTAGGATGGAGTCAATCCTTGATTAT
1 AATTTGATGAGATTTTATTTATTACTTTCTTTAAGATGGAGTCAATCCTTGATTAT
* * *
26944407 AATTTGATGAGATTTTCTTTCTTACTTTCTTTAAGATTGAGTCAATCCTTGATTAT
1 AATTTGATGAGATTTTATTTATTACTTTCTTTAAGATGGAGTCAATCCTTGATTAT
26944463 A
1 A
26944464 GGGATTCTTC
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.26, C:0.11, G:0.14, T:0.50
Consensus pattern (56 bp):
AATTTGATGAGATTTTATTTATTACTTTCTTTAAGATGGAGTCAATCCTTGATTAT
Found at i:26944653 original size:26 final size:28
Alignment explanation
Indices: 26944624--26944689 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 28
26944614 ATTCTTAAAA
26944624 AAAAAATTAAAATTTTCTAAAA-TT-A-T
1 AAAAAATTAAAATTTTC-AAAAGTTAACT
* *
26944650 AAAAAGTTAGAATTTTCAAAAGTTAACT
1 AAAAAATTAAAATTTTCAAAAGTTAACT
*
26944678 AAAAAATGAAAA
1 AAAAAATTAAAA
26944690 ATAATATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 4 0.12
26 17 0.53
27 1 0.03
28 10 0.31
ACGTcount: A:0.59, C:0.05, G:0.06, T:0.30
Consensus pattern (28 bp):
AAAAAATTAAAATTTTCAAAAGTTAACT
Found at i:26956112 original size:18 final size:17
Alignment explanation
Indices: 26956084--26956117 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
26956074 ATTGTGTTGA
26956084 GAAAATAATTTAATTAG
1 GAAAATAATTTAATTAG
26956101 GAAAATTAATTTAATTA
1 GAAAA-TAATTTAATTA
26956118 ATTAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (17 bp):
GAAAATAATTTAATTAG
Found at i:26956873 original size:9 final size:9
Alignment explanation
Indices: 26956859--26956894 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26956849 AAATTTGAAC
26956859 ATAAAATAA
1 ATAAAATAA
26956868 ATAAAATAA
1 ATAAAATAA
26956877 ATAAAATAA
1 ATAAAATAA
26956886 AT-AAATAA
1 ATAAAATAA
26956894 A
1 A
26956895 AACGAAAGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (9 bp):
ATAAAATAA
Found at i:26956878 original size:13 final size:14
Alignment explanation
Indices: 26956862--26956895 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
26956852 TTTGAACATA
26956862 AAAT-AAATAAAAT
1 AAATAAAATAAAAT
26956875 AAATAAAAT-AAAT
1 AAATAAAATAAAAT
26956888 AAATAAAA
1 AAATAAAA
26956896 ACGAAAGACG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:26958974 original size:23 final size:23
Alignment explanation
Indices: 26958944--26959056 Score: 129
Period size: 23 Copynumber: 4.9 Consensus size: 23
26958934 ACTTAGTGCC
26958944 ATTCTGGTGTGTTTGGGTGGATT
1 ATTCTGGTGTGTTTGGGTGGATT
* *
26958967 ATTCTGGTGTGTTTGGGAGGAAT
1 ATTCTGGTGTGTTTGGGTGGATT
* * *
26958990 ATTTTGGTGTGTTTGGATGGATC
1 ATTCTGGTGTGTTTGGGTGGATT
** *
26959013 ATTCTGGTGTGTTT-GGTACAATA
1 ATTCTGGTGTGTTTGGGT-GGATT
*
26959036 ATTCTGGTGTGTTTGGTTGGA
1 ATTCTGGTGTGTTTGGGTGGA
26959057 ATTTGTGTAT
Statistics
Matches: 73, Mismatches: 15, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
22 2 0.03
23 69 0.95
24 2 0.03
ACGTcount: A:0.14, C:0.05, G:0.35, T:0.45
Consensus pattern (23 bp):
ATTCTGGTGTGTTTGGGTGGATT
Found at i:26959017 original size:46 final size:46
Alignment explanation
Indices: 26958944--26959056 Score: 156
Period size: 46 Copynumber: 2.5 Consensus size: 46
26958934 ACTTAGTGCC
* * *
26958944 ATTCTGGTGTGTTTGGGTGGATTATTCTGGTGTGTTTGGGAGGAAT-
1 ATTCTGGTGTGTTTGGATGGATCATTCTGGTGTGTTTGGGA-CAATA
* *
26958990 ATTTTGGTGTGTTTGGATGGATCATTCTGGTGTGTTTGGTACAATA
1 ATTCTGGTGTGTTTGGATGGATCATTCTGGTGTGTTTGGGACAATA
*
26959036 ATTCTGGTGTGTTTGGTTGGA
1 ATTCTGGTGTGTTTGGATGGA
26959057 ATTTGTGTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 3 0.05
46 56 0.95
ACGTcount: A:0.14, C:0.05, G:0.35, T:0.45
Consensus pattern (46 bp):
ATTCTGGTGTGTTTGGATGGATCATTCTGGTGTGTTTGGGACAATA
Found at i:26963344 original size:16 final size:16
Alignment explanation
Indices: 26963317--26963349 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26963307 AGCCCAGCTA
26963317 GAAGATGAAAAGTTGAT
1 GAAGATGAAAAG-TGAT
26963334 GAAGA-GAAAAGTGAT
1 GAAGATGAAAAGTGAT
26963349 G
1 G
26963350 GTATGAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 6 0.38
17 5 0.31
ACGTcount: A:0.48, C:0.00, G:0.33, T:0.18
Consensus pattern (16 bp):
GAAGATGAAAAGTGAT
Found at i:26965445 original size:23 final size:23
Alignment explanation
Indices: 26965419--26965509 Score: 103
Period size: 23 Copynumber: 4.0 Consensus size: 23
26965409 ATACACGAAT
*
26965419 TCCAACCAAACACACCAGAATGA
1 TCCACCCAAACACACCAGAATGA
* * *
26965442 TCCATCCAAACACACTAAAAT-A
1 TCCACCCAAACACACCAGAATGA
* *
26965464 TTCCTCCCAAACACACCAGAATAA
1 -TCCACCCAAACACACCAGAATGA
*
26965488 TCCACCCAAACTCACCAGAATG
1 TCCACCCAAACACACCAGAATG
26965510 GCACTAAGTG
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
22 1 0.02
23 54 0.96
24 1 0.02
ACGTcount: A:0.44, C:0.36, G:0.05, T:0.14
Consensus pattern (23 bp):
TCCACCCAAACACACCAGAATGA
Found at i:26966552 original size:25 final size:25
Alignment explanation
Indices: 26966508--26966555 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26966498 CTCTGTTTCT
* *
26966508 TTTTATGCTTTGTTTCCTTTATTCC
1 TTTTATGCTTTATTTACTTTATTCC
*
26966533 TTTTATGTTTTATTTACTTTATT
1 TTTTATGCTTTATTTACTTTATT
26966556 AGTTTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.12, C:0.12, G:0.06, T:0.69
Consensus pattern (25 bp):
TTTTATGCTTTATTTACTTTATTCC
Found at i:26966561 original size:25 final size:25
Alignment explanation
Indices: 26966508--26966563 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
26966498 CTCTGTTTCT
* * *
26966508 TTTTATGCTTTGTTTCCTTTATTCC
1 TTTTATGCTTTATTTACTTTATTAC
* *
26966533 TTTTATGTTTTATTTACTTTATTAG
1 TTTTATGCTTTATTTACTTTATTAC
26966558 TTTTAT
1 TTTTAT
26966564 AATAATATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.14, C:0.11, G:0.07, T:0.68
Consensus pattern (25 bp):
TTTTATGCTTTATTTACTTTATTAC
Found at i:26989086 original size:15 final size:16
Alignment explanation
Indices: 26989064--26989097 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26989054 GGATAATTCC
* *
26989064 CTTTTTTTCTCCTTTT
1 CTTTTTTCCCCCTTTT
26989080 CTTTTTTCCCCCTTTT
1 CTTTTTTCCCCCTTTT
26989096 CT
1 CT
26989098 ATTGGTCACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (16 bp):
CTTTTTTCCCCCTTTT
Found at i:26994573 original size:17 final size:17
Alignment explanation
Indices: 26994551--26994586 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26994541 ATAGATATGC
* *
26994551 AAAATAATAAAATTAAT
1 AAAATAACAAAATCAAT
26994568 AAAATAACAAAATCAAT
1 AAAATAACAAAATCAAT
26994585 AA
1 AA
26994587 TGAATCTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.72, C:0.06, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAATAACAAAATCAAT
Found at i:27004725 original size:18 final size:18
Alignment explanation
Indices: 27004702--27004737 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
27004692 CATACTCCTA
27004702 AGAGAACCTACATTGCTG
1 AGAGAACCTACATTGCTG
27004720 AGAGAACCTACATTGCTG
1 AGAGAACCTACATTGCTG
27004738 TTACACTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (18 bp):
AGAGAACCTACATTGCTG
Found at i:27028494 original size:23 final size:23
Alignment explanation
Indices: 27028468--27028513 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
27028458 TTATATCGAT
27028468 GGTCGAGATTAAATCCTATCTAC
1 GGTCGAGATTAAATCCTATCTAC
27028491 GGTCGAGATTAAATCCTATCTAC
1 GGTCGAGATTAAATCCTATCTAC
27028514 AATTGAGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.30
Consensus pattern (23 bp):
GGTCGAGATTAAATCCTATCTAC
Found at i:27030117 original size:23 final size:23
Alignment explanation
Indices: 27030091--27030136 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
27030081 AACCTTAAAT
*
27030091 TATGAGTCCTTATATGGTAGTTA
1 TATGAGTCCTTACATGGTAGTTA
*
27030114 TATGAGTCCTTACGTGGTAGTTA
1 TATGAGTCCTTACATGGTAGTTA
27030137 GACCATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.24, C:0.11, G:0.24, T:0.41
Consensus pattern (23 bp):
TATGAGTCCTTACATGGTAGTTA
Found at i:27034572 original size:24 final size:24
Alignment explanation
Indices: 27034544--27034604 Score: 79
Period size: 24 Copynumber: 2.5 Consensus size: 24
27034534 AACCGTATTT
* * *
27034544 GCACACATAGTGCTA-ATTACACTC
1 GCACACATAGTGCCATAGTAAAC-C
27034568 GCACACATAGTGCCATAGTAAACC
1 GCACACATAGTGCCATAGTAAACC
27034592 GCACACATAGTGC
1 GCACACATAGTGC
27034605 ATTGGATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
24 28 0.85
25 5 0.15
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (24 bp):
GCACACATAGTGCCATAGTAAACC
Found at i:27039074 original size:16 final size:19
Alignment explanation
Indices: 27039053--27039096 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
27039043 AGAGACTTCC
27039053 CTTTCTTT-TTC-CT-TTT
1 CTTTCTTTATTCTCTATTT
27039069 CTTTCTTTTATTCTCTATTT
1 CTTTC-TTTATTCTCTATTT
27039089 CTTTCTTT
1 CTTTCTTT
27039097 CCTTTCTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.21
17 3 0.12
18 3 0.12
19 5 0.21
20 8 0.33
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.73
Consensus pattern (19 bp):
CTTTCTTTATTCTCTATTT
Found at i:27043401 original size:18 final size:19
Alignment explanation
Indices: 27043360--27043401 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
27043350 GAAAAAAAGT
* *
27043360 TTAATAGCACAAATAAATA
1 TTAATAGCAAAAATAAACA
*
27043379 ATAATAG-AAAAATAAACA
1 TTAATAGCAAAAATAAACA
27043397 TTAAT
1 TTAAT
27043402 TTTATTATAA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.26
Consensus pattern (19 bp):
TTAATAGCAAAAATAAACA
Found at i:27051494 original size:40 final size:40
Alignment explanation
Indices: 27051401--27051578 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
27051391 AAGCCAAGTA
* * *
27051401 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
27051439 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
27051479 CCTTTGGGACTTAGCCCGGATATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
27051519 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
27051559 CCTTCAGGACTTAGCCCGGA
1 CCTTCGGGACTTAGCCCGGA
27051579 ACTAGTCACC
Statistics
Matches: 124, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 12 0.10
39 17 0.14
40 95 0.77
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:27066120 original size:40 final size:40
Alignment explanation
Indices: 27066062--27066179 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
27066052 TAGAAAAAAA
*
27066062 TATAACTGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
27066102 TATAACCGGGTTAGGTCCCGAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* * *
27066142 TATAACCGGGTTAAGTCCCGAAGGAATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
27066180 GTTACATCCG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 72 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:27071857 original size:47 final size:47
Alignment explanation
Indices: 27071803--27072004 Score: 175
Period size: 47 Copynumber: 4.3 Consensus size: 47
27071793 ATACCATGTT
* *
27071803 TGGGACATGGCATCGGCATTGA-GACGAAGGCTAGTGTAAGACGTGTC
1 TGGGACAT-GCATCAGCATTGATGATGAAGGCTAGTGTAAGACGTGTC
* *
27071850 TGGGACATGCATCAG--TTGCATCATGATAGCCT-GTGTAAGACGTCGTC
1 TGGGACATGCATCAGCATTG-ATGATGA-AGGCTAGTGTAAGACGT-GTC
* * * * *
27071897 TGGGACATGGCATCGGCATAGA-GGTG-AGTGCCAGTGTAAGACATGTC
1 TGGGACAT-GCATCAGCATTGATGATGAAG-GCTAGTGTAAGACGTGTC
* * *
27071944 TGGGACATGCATCAGCCTCGATGATGTTAGGC-AGTGTAAGACGTGTC
1 TGGGACATGCATCAGCATTGATGATG-AAGGCTAGTGTAAGACGTGTC
*
27071991 TGGAACATGCATCA
1 TGGGACATGCATCA
27072005 ACTAAGTTTC
Statistics
Matches: 126, Mismatches: 17, Indels: 24
0.75 0.10 0.14
Matches are distributed among these distances:
44 3 0.02
45 1 0.01
46 32 0.25
47 65 0.52
48 20 0.16
49 3 0.02
50 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (47 bp):
TGGGACATGCATCAGCATTGATGATGAAGGCTAGTGTAAGACGTGTC
Found at i:27071992 original size:94 final size:95
Alignment explanation
Indices: 27071803--27072095 Score: 269
Period size: 94 Copynumber: 3.1 Consensus size: 95
27071793 ATACCATGTT
* * *
27071803 TGGGACATGGCATCGGCATTGAGACGAAG-GCTAGTGTAAGACGTGTCTGGGACATGCATCAG-T
1 TGGGACATGGCATCGGCATAGAGATG-AGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCT
* *
27071866 TGCATCATGATAGCCTGTGTAAGACGTCGTC
65 CGCATCATGATAGCCAGTGTAAGACGTCGTC
* *
27071897 TGGGACATGGCATCGGCATAGAGGTGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCAGCCT
1 TGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAG-CT
* * *
27071962 CG-ATGATGTTAGGCAGTGTAAGACGT-GTC
65 CGCATCATGATAGCCAGTGTAAGACGTCGTC
* ** * ** * * *
27071991 TGGAACAT-GCATCAAC-TA-AGTTTCGTGCTAGTGTAAGACATGTTTGGGAAATGCATCAGCAC
1 TGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTC
* ** * * *
27072053 GTATACACAAGAGCTAGTGTAAGACCAT-GTC
66 GCAT-CATGATAGCCAGTGTAAGA-CGTCGTC
27072084 TGGGACATGGCA
1 TGGGACATGGCA
27072096 GCTGCAACTT
Statistics
Matches: 163, Mismatches: 29, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
90 3 0.02
91 37 0.23
92 14 0.09
93 20 0.12
94 67 0.41
95 20 0.12
96 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (95 bp):
TGGGACATGGCATCGGCATAGAGATGAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTC
GCATCATGATAGCCAGTGTAAGACGTCGTC
Found at i:27072964 original size:55 final size:55
Alignment explanation
Indices: 27072859--27072977 Score: 136
Period size: 55 Copynumber: 2.2 Consensus size: 55
27072849 CTTAAACTTT
* * * * *
27072859 TAAA-TCAGTATTGTCCACGATTAGGCCATACGGGCGTGTGCCATAGCCGTG-TC
1 TAAAGTCAGTATTGACCACGAGTAGGCCACACAGGCGTGTGCCATAGCCGTGCCC
* *
27072912 TATAAGTCAGTATTGACCACGGGTAGGCCACACAGGCGTGTGTCAT-GCCCGTGCCC
1 TA-AAGTCAGTATTGACCACGAGTAGGCCACACAGGCGTGTGCCATAG-CCGTGCCC
27072968 TAAAGTCAGT
1 TAAAGTCAGT
27072978 GTCGCACACA
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
53 2 0.04
54 3 0.05
55 47 0.85
56 3 0.05
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (55 bp):
TAAAGTCAGTATTGACCACGAGTAGGCCACACAGGCGTGTGCCATAGCCGTGCCC
Found at i:27073665 original size:25 final size:25
Alignment explanation
Indices: 27073645--27073692 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
27073635 GTTTTCATAG
27073645 TATACTACCTACAGTAGTTTCAGAA
1 TATACTACCTACAGTAGTTTCAGAA
* *
27073670 TATACTATCTACAGTATTTTCAG
1 TATACTACCTACAGTAGTTTCAG
27073693 TTTAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (25 bp):
TATACTACCTACAGTAGTTTCAGAA
Found at i:27081273 original size:22 final size:23
Alignment explanation
Indices: 27081222--27081273 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
27081212 GGGTATTACA
*
27081222 TTTAAATGCTGGCAAAAGTATGC
1 TTTAAATGCTGGCAAAAGTAAGC
* * *
27081245 TTCAAATGCTGTC-AAAGTAAGT
1 TTTAAATGCTGGCAAAAGTAAGC
27081267 TTTAAAT
1 TTTAAAT
27081274 CTTGTCCAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (23 bp):
TTTAAATGCTGGCAAAAGTAAGC
Found at i:27081327 original size:23 final size:23
Alignment explanation
Indices: 27081265--27081328 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 23
27081255 GTCAAAGTAA
* *
27081265 GTTTTAAATCTTGTCCAAAATAT
1 GTTTTAAATGTTGTCCAAAACAT
* ** *
27081288 GCTTTAAATGTCATCCAAAGCAT
1 GTTTTAAATGTTGTCCAAAACAT
*
27081311 GTTTTAAGTGTTGTCCAA
1 GTTTTAAATGTTGTCCAA
27081329 GCTGGACATT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (23 bp):
GTTTTAAATGTTGTCCAAAACAT
Found at i:27081449 original size:105 final size:105
Alignment explanation
Indices: 27081315--27081753 Score: 675
Period size: 105 Copynumber: 4.2 Consensus size: 105
27081305 AAGCATGTTT
* *
27081315 TAAGTG-TTGTCC-AAGCTGGACATTTCTATTTTGTTTATGTTAAATTAAATGTTAGGATTAAAT
1 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
* * * ***
27081378 AAATGTTTATGTCAATTTTATTGCTAATATTATAGGTGTA
66 AAGTGTTTATGTCGATTTTAATGCTAATATTATAGGCAAA
*
27081418 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGACTAAAT
1 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
* * *
27081483 AAGTGTTTATGTCGATTTTAATGTTGATATTATAAGCAAA
66 AAGTGTTTATGTCGATTTTAATGCTAATATTATAGGCAAA
* * *
27081523 TAAGTGTTTTTCCAAAGCTCGACATTTTTATTATGTTTATGTTAAATTAAATATTAGGATTAAAT
1 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
* * *
27081588 AAGTGTTTATGTTGATTTTAATGCTGATATTATAGACAAA
66 AAGTGTTTATGTCGATTTTAATGCTAATATTATAGGCAAA
27081628 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
1 TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
* **
27081693 AAGTGTTTATGTCGATTTTAATGCTAATATTTTAGGTGAA
66 AAGTGTTTATGTCGATTTTAATGCTAATATTATAGGCAAA
27081733 TAAGTGTTTTTCCAAAGCTGG
1 TAAGTGTTTTTCCAAAGCTGG
27081754 TTATATCTGA
Statistics
Matches: 305, Mismatches: 29, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
103 6 0.02
104 5 0.02
105 294 0.96
ACGTcount: A:0.32, C:0.07, G:0.16, T:0.44
Consensus pattern (105 bp):
TAAGTGTTTTTCCAAAGCTGGACATTTCTATTATGTTTATGTTAAATTAAATGTTAGGATTAAAT
AAGTGTTTATGTCGATTTTAATGCTAATATTATAGGCAAA
Found at i:27082190 original size:36 final size:36
Alignment explanation
Indices: 27082145--27082259 Score: 97
Period size: 36 Copynumber: 3.2 Consensus size: 36
27082135 ATGAACACTC
*
27082145 ATTTGTCAGTTTTACCGACCAGAGCAGGGCACATTT
1 ATTTATCAGTTTTACCGACCAGAGCAGGGCACATTT
* * * *
27082181 ATTTATCAGTTATACTGACC-GATGCTGGGCACATTC
1 ATTTATCAGTTTTACCGACCAGA-GCAGGGCACATTT
* * * * * * *
27082217 ATTTGTCAATTTTATCAACCAGCGTAGGGCGCATTT
1 ATTTATCAGTTTTACCGACCAGAGCAGGGCACATTT
*
27082253 GTTTATC
1 ATTTATC
27082260 GATTATACCA
Statistics
Matches: 59, Mismatches: 18, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
35 2 0.03
36 56 0.95
37 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (36 bp):
ATTTATCAGTTTTACCGACCAGAGCAGGGCACATTT
Found at i:27082340 original size:74 final size:73
Alignment explanation
Indices: 27082242--27082502 Score: 292
Period size: 74 Copynumber: 3.6 Consensus size: 73
27082232 CAACCAGCGT
* * * * * *
27082242 AGGGCGCATTTGTTTATCGATTATACCAACGAGTACTGGGCACACACAGTTGTCTCGGTTTTATT
1 AGGGCGCATTTATTTGTCGATTATACCGACCAGTGCTGGGCACACACAATTGTCTCGGTTTTA-T
*
27082307 GAATAGCAC
65 GAACAGCAC
* * *
27082316 AGGGCTCATTTATTTGTCGGTTATACTGACCAGTGCTGGGCACACACAATTGTCTCGGTTTTACT
1 AGGGCGCATTTATTTGTCGATTATACCGACCAGTGCTGGGCACACACAATTGTCTCGGTTTTA-T
*
27082381 GTACAGCAC
65 GAACAGCAC
* * * * * * *
27082390 AGGGCGCATTTATTTGTTGATTATATCGACTAGTGCTGGGCACACTCATTTG-C-CAGTTTTACG
1 AGGGCGCATTTATTTGTCGATTATACCGACCAGTGCTGGGCACACACAATTGTCTCGGTTTTATG
*
27082453 ACCAGCAC
66 AACAGCAC
* * *
27082461 AGGGCGCATTTATTTGTAGGTTATACCGACCAGTGCCGGGCA
1 AGGGCGCATTTATTTGTCGATTATACCGACCAGTGCTGGGCA
27082503 GACTCATTTG
Statistics
Matches: 158, Mismatches: 29, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
71 44 0.28
72 7 0.04
73 1 0.01
74 106 0.67
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.31
Consensus pattern (73 bp):
AGGGCGCATTTATTTGTCGATTATACCGACCAGTGCTGGGCACACACAATTGTCTCGGTTTTATG
AACAGCAC
Found at i:27082557 original size:72 final size:72
Alignment explanation
Indices: 27082139--27082667 Score: 322
Period size: 72 Copynumber: 7.3 Consensus size: 72
27082129 GAATGAATGA
** * * ** *
27082139 ACACTCATTTGTC-AGTTTTACCGACCAG-AGCAGGGCACATTTATTTATCAGTTATACTGACC-
1 ACACTCATTTGTCGA-TTTTACTAACCAGCA-CAGGGCGCATTTATTTGTTGGTTATACCGACCA
27082201 GATGCTGGGC
64 G-TGCTGGGC
* * ** * * * * * *
27082211 ACATTCATTTGTCAATTTTA-TCAACCAGCGTAGGGCGCATTTGTTTATCGATTATACCAACGAG
1 ACACTCATTTGTCGATTTTACT-AACCAGCACAGGGCGCATTTATTTGTTGGTTATACCGACCAG
*
27082275 TACTGGGC
65 TGCTGGGC
* * * * * * * *
27082283 ACACACAGTTGTCTCGGTTTTATTGAA-TAGCACAGGGCTCATTTATTTGTCGGTTATACTGACC
1 ACACTCA-TT-TGTCGATTTTACT-AACCAGCACAGGGCGCATTTATTTGTTGGTTATACCGACC
27082347 AGTGCTGGGC
63 AGTGCTGGGC
* * * * * * *
27082357 ACACACAATTGTCTCGGTTTTACTGTA-CAGCACAGGGCGCATTTATTTGTTGATTATATCGACT
1 ACACTC-ATT-TGTCGATTTTACT-AACCAGCACAGGGCGCATTTATTTGTTGGTTATACCGACC
27082421 AGTGCTGGGC
63 AGTGCTGGGC
* * *
27082431 ACACTCATTTG-CCAGTTTTAC-GACCAGCACAGGGCGCATTTATTTGTAGGTTATACCGACCAG
1 ACACTCATTTGTCGA-TTTTACTAACCAGCACAGGGCGCATTTATTTGTTGGTTATACCGACCAG
*
27082494 TGCCGGGC
65 TGCTGGGC
* * * * * *
27082502 AGACTCATTTGTCGACTTTACTAACCAGCGCAGGTCACATTTATTTGTTGGTTATACTGACCAGT
1 ACACTCATTTGTCGATTTTACTAACCAGCACAGGGCGCATTTATTTGTTGGTTATACCGACCAGT
***
27082567 GCTAAAC
66 GCTGGGC
* * * * * * * * ** * *
27082574 ACACTCATTTTTCGGTATTACCAA--AGAATGTAAGGCACATTTATTTGTCAGTTACACCGACAA
1 ACACTCATTTGTCGATTTTACTAACCAGCA--CAGGGCGCATTTATTTGTTGGTTATACCGACCA
27082637 GTGCTGGGC
64 GTGCTGGGC
* **
27082646 ACACACATTTCCCGATTTTACT
1 ACACTCATTTGTCGATTTTACT
27082668 GAATAGCGAA
Statistics
Matches: 356, Mismatches: 87, Indels: 28
0.76 0.18 0.06
Matches are distributed among these distances:
70 3 0.01
71 58 0.16
72 172 0.48
73 7 0.02
74 112 0.31
75 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (72 bp):
ACACTCATTTGTCGATTTTACTAACCAGCACAGGGCGCATTTATTTGTTGGTTATACCGACCAGT
GCTGGGC
Found at i:27082565 original size:36 final size:36
Alignment explanation
Indices: 27082315--27082565 Score: 107
Period size: 36 Copynumber: 6.9 Consensus size: 36
27082305 TTGAATAGCA
* * *
27082315 CAGGGCTCATTTATTTGTCGGTTATACTGACCAGTG
1 CAGGGCACATTTATTTGTAGGTTATACTGACCAGCG
* *** * * * *
27082351 CTGGGCACACACAATTGTCTCGGTTTTACTGTA-CAGCA
1 CAGGGCACA-TTTATT-TGTAGGTTATACTG-ACCAGCG
* * * * *
27082389 CAGGGCGCATTTATTTGTTGATTATA-TCGACTAGTG
1 CAGGGCACATTTATTTGTAGGTTATACT-GACCAGCG
* * * * * *
27082425 CTGGGCACACTCATTTGCCA-GTTTTAC-GACCAGCA
1 CAGGGCACATTTATTTG-TAGGTTATACTGACCAGCG
* * *
27082460 CAGGGCGCATTTATTTGTAGGTTATACCGACCAGTG
1 CAGGGCACATTTATTTGTAGGTTATACTGACCAGCG
* * * * * * *
27082496 CCGGGCAGACTCATTTGTCGACTT-TACTAACCAGCG
1 CAGGGCACATTTATTTGTAG-GTTATACTGACCAGCG
* *
27082532 CAGGTCACATTTATTTGTTGGTTATACTGACCAG
1 CAGGGCACATTTATTTGTAGGTTATACTGACCAG
27082566 TGCTAAACAC
Statistics
Matches: 146, Mismatches: 58, Indels: 22
0.65 0.26 0.10
Matches are distributed among these distances:
34 1 0.01
35 28 0.19
36 86 0.59
37 8 0.05
38 22 0.15
39 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.32
Consensus pattern (36 bp):
CAGGGCACATTTATTTGTAGGTTATACTGACCAGCG
Found at i:27086989 original size:29 final size:29
Alignment explanation
Indices: 27086926--27086993 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
27086916 TAATCAACCA
27086926 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
27086955 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
27086984 CGCACACTTA
1 CGCACACTTA
27086994 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:27087134 original size:29 final size:29
Alignment explanation
Indices: 27087095--27087173 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
27087085 CTTAATAATC
* *
27087095 AACCGCGCACACTTAGTGCCATATACTTTA
1 AACC-CGCACACTTAGTGCCATACAATTTA
* **
27087125 AACTCGCACACTTAGTGCTGTACAATTTA
1 AACCCGCACACTTAGTGCCATACAATTTA
27087154 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27087174 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 38 0.93
30 3 0.07
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATACAATTTA
Found at i:27089387 original size:9 final size:9
Alignment explanation
Indices: 27089359--27089411 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
27089349 ATAAACATGG
27089359 TATGTATGA
1 TATGTATGA
*
27089368 TATGCACATGA
1 TATG--TATGA
*
27089379 CATGTATGA
1 TATGTATGA
27089388 TATGCATATGA
1 TATG--TATGA
27089399 TATGTATGA
1 TATGTATGA
27089408 TATG
1 TATG
27089412 CACATGATGT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
9 20 0.56
11 16 0.44
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.38
Consensus pattern (9 bp):
TATGTATGA
Found at i:27089397 original size:11 final size:11
Alignment explanation
Indices: 27089363--27089419 Score: 59
Period size: 11 Copynumber: 5.5 Consensus size: 11
27089353 ACATGGTATG
27089363 TATGATATGCA
1 TATGATATGCA
* *
27089374 CATGACATG--
1 TATGATATGCA
27089383 TATGATATGCA
1 TATGATATGCA
27089394 TATGATATG--
1 TATGATATGCA
27089403 TATGATATGCA
1 TATGATATGCA
*
27089414 CATGAT
1 TATGAT
27089420 GTAATCATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
9 16 0.43
11 21 0.57
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (11 bp):
TATGATATGCA
Found at i:27089419 original size:20 final size:20
Alignment explanation
Indices: 27089353--27089419 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
27089343 ATTTTGATAA
*
27089353 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
27089373 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
27089393 ATATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
27089413 ACATGAT
1 ACATGAT
27089420 GTAATCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:27089500 original size:23 final size:23
Alignment explanation
Indices: 27089470--27089542 Score: 119
Period size: 23 Copynumber: 3.1 Consensus size: 23
27089460 AGGAAGTGAA
*
27089470 AAAGGGCTTACGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
27089493 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
27089516 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
27089540 AAA
1 AAA
27089543 AGAGGCTAGG
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
23 25 0.53
24 22 0.47
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:27089525 original size:24 final size:24
Alignment explanation
Indices: 27089469--27089549 Score: 128
Period size: 24 Copynumber: 3.4 Consensus size: 24
27089459 GAGGAAGTGA
*
27089469 AAAAGGGCTTACGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
27089493 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
27089516 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
27089540 AAAAGAGGCT
1 AAAAG-GGCT
27089550 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
23 22 0.42
24 27 0.51
25 4 0.08
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:27089792 original size:31 final size:31
Alignment explanation
Indices: 27089757--27089820 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
27089747 CATTTACAGT
27089757 AAAGGCTTCGGCCCAGTAATATAAAATATGA
1 AAAGGCTTCGGCCCAGTAATATAAAATATGA
** *
27089788 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATAAAATATGA
27089819 AA
1 AA
27089821 TATGAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATAAAATATGA
Found at i:27097334 original size:25 final size:25
Alignment explanation
Indices: 27097305--27097352 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
27097295 TTATAACATG
* *
27097305 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
27097330 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
27097353 GTTTATGTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:27097419 original size:20 final size:20
Alignment explanation
Indices: 27097396--27097454 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
27097386 TAAACATGGT
27097396 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
* *
27097416 ATGTATGATATGCACAGGAT
1 ATGTATGATATGCACATGAC
*
27097436 ATGTATGATGTGCACATGA
1 ATGTATGATATGCACATGA
27097455 TGTAATCATA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:27097570 original size:45 final size:46
Alignment explanation
Indices: 27097506--27097599 Score: 147
Period size: 45 Copynumber: 2.1 Consensus size: 46
27097496 AGGAAGTGAA
27097506 AAAGGGCTTACGCCCCAGTTATT-AAA-GGCTTATGCCCCAGTTATT
1 AAAGGGCTTACGCCCCAGTTATTAAAAGGGCTTATG-CCCAGTTATT
* *
27097551 AAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTTTGCCCAGTTATT
1 AAAGGGCTTACGCCCCAGTTATTAAAAGGGCTTATGCCCAGTTATT
27097597 AAA
1 AAA
27097600 AGAGGCTAGG
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
45 22 0.49
46 16 0.36
47 7 0.16
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (46 bp):
AAAGGGCTTACGCCCCAGTTATTAAAAGGGCTTATGCCCAGTTATT
Found at i:27097600 original size:23 final size:24
Alignment explanation
Indices: 27097505--27097606 Score: 149
Period size: 23 Copynumber: 4.4 Consensus size: 24
27097495 GAGGAAGTGA
*
27097505 AAAAGGGCTTACGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
27097529 -AAA-GGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
27097551 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
27097574 AAAAGGGCTTTTG-CCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
27097597 AAAAGAGGCT
1 AAAAG-GGCT
27097607 AGGCCTCCAG
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
22 21 0.29
23 37 0.51
24 15 0.21
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:27097848 original size:31 final size:31
Alignment explanation
Indices: 27097813--27097876 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
27097803 CGTTTACAGT
27097813 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
**
27097844 AAAGGCTTCGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
27097875 AA
1 AA
27097877 TATGAAAAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:27100074 original size:48 final size:48
Alignment explanation
Indices: 27100013--27100529 Score: 853
Period size: 48 Copynumber: 10.9 Consensus size: 48
27100003 ATATACACAC
*
27100013 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
27100061 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
27100107 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
**
27100155 ATCTCATGTATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
27100203 ATCTCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
27100251 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
27100299 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
27100347 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCAC--ACACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
27100393 ATCTCATACATATTTCATACTAGCCATTCGGCATTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
** *
27100441 ATCTCATGTATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
27100489 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
27100530 CACATATATA
Statistics
Matches: 438, Mismatches: 27, Indels: 8
0.93 0.06 0.02
Matches are distributed among these distances:
46 84 0.19
48 354 0.81
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:27100170 original size:142 final size:142
Alignment explanation
Indices: 27100022--27100536 Score: 931
Period size: 142 Copynumber: 3.6 Consensus size: 142
27100012 CATCTCCTAC
27100022 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
27100087 TTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
66 TTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
27100152 CATATCTCATGT
131 CATATCTCATGT
* *
27100164 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
* *
27100229 TTCAGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
66 TTCGGCTTTACCAC--ACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATA
**
27100294 TACATATCTCATAC
129 TACATATCTCATGT
27100308 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
* *
27100373 TTCGGCTTTACCACACACATATCTCATACATATTTCATACTAGCCATTCGGCATTACCACATATA
66 TTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
27100438 CATATCTCATGT
131 CATATCTCATGT
*
27100450 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
1 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
27100515 TTCGGCTTTACCACACACATAT
66 TTCGGCTTTACCACACACATAT
27100537 ATATTTATCT
Statistics
Matches: 356, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
142 220 0.62
144 136 0.38
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (142 bp):
ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATTTCACATTAGCCA
TTCGGCTTTACCACACACATATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATA
CATATCTCATGT
Found at i:27106329 original size:31 final size:31
Alignment explanation
Indices: 27106294--27106355 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
27106284 ACGTAAGCAC
27106294 TTTGTTCACCAGATAACATAGGTATAAGAAA
1 TTTGTTCACCAGATAACATAGGTATAAGAAA
27106325 TTTGTTCACCAGATAACATAGGTATAAGAAA
1 TTTGTTCACCAGATAACATAGGTATAAGAAA
27106356 GCTTACACTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (31 bp):
TTTGTTCACCAGATAACATAGGTATAAGAAA
Found at i:27108505 original size:15 final size:15
Alignment explanation
Indices: 27108485--27108513 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27108475 ACGCATGCTC
27108485 GTATGTAATTATTTA
1 GTATGTAATTATTTA
27108500 GTATGTAATTATTT
1 GTATGTAATTATTT
27108514 CTTTAAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (15 bp):
GTATGTAATTATTTA
Found at i:27133403 original size:21 final size:21
Alignment explanation
Indices: 27133370--27133420 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
27133360 TGGATATAAC
*
27133370 AACAATGTCAACTGGCGGGTT
1 AACAATGTTAACTGGCGGGTT
*
27133391 AACACTGTTAACTGGCGGGTT
1 AACAATGTTAACTGGCGGGTT
*
27133412 AACATTGTT
1 AACAATGTT
27133421 TGGTCTGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (21 bp):
AACAATGTTAACTGGCGGGTT
Found at i:27143480 original size:30 final size:30
Alignment explanation
Indices: 27143444--27143504 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
27143434 GGATCAAAGT
*
27143444 ATAATTTCACCTATATAAATTATAAAAGAA
1 ATAATTTAACCTATATAAATTATAAAAGAA
27143474 ATAATTTAACCTATATAAATTATAAAAGAA
1 ATAATTTAACCTATATAAATTATAAAAGAA
27143504 A
1 A
27143505 CACGAAAGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.08, G:0.03, T:0.33
Consensus pattern (30 bp):
ATAATTTAACCTATATAAATTATAAAAGAA
Found at i:27157766 original size:48 final size:46
Alignment explanation
Indices: 27157712--27157804 Score: 107
Period size: 46 Copynumber: 2.0 Consensus size: 46
27157702 CTAGTTTAAC
27157712 CACATTTCTGTAAGGCAGA-TTGTCTGCAATTATAGTGGCTTGACCACT
1 CACATTTCT-TAAGGCAGATTTG-CTGCAA-TATAGTGGCTTGACCACT
* ** * *
27157760 CACATTTGTTCTGGCAGCTTTGCTGCAATATAGTGGCTTGTCCAC
1 CACATTTCTTAAGGCAGATTTGCTGCAATATAGTGGCTTGACCAC
27157805 ATATATTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
46 16 0.41
47 12 0.31
48 11 0.28
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.34
Consensus pattern (46 bp):
CACATTTCTTAAGGCAGATTTGCTGCAATATAGTGGCTTGACCACT
Found at i:27163149 original size:47 final size:47
Alignment explanation
Indices: 27163093--27163841 Score: 1291
Period size: 47 Copynumber: 15.9 Consensus size: 47
27163083 GAAATGATAG
27163093 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
* *
27163140 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
*
27163187 TAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
27163234 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
*
27163281 AAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
*
27163328 AAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
* *
27163375 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
* * * *
27163422 TAATAGCCTATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
*
27163469 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
*
27163516 TAATGGCCGATGTGATGAATGTGAAAGTGTATATCTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
*
27163563 AAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
*
27163610 AAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
*
27163657 TAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
* *
27163704 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
* * *
27163751 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
**
27163798 TAATGGCCGATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAG
27163842 TCCCGAAGGG
Statistics
Matches: 677, Mismatches: 25, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 677 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCC
Done.