Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 97 of 345
Found at i:31897318 original size:48 final size:48
Alignment explanation
Indices: 31897224--31897403 Score: 138
Period size: 48 Copynumber: 3.8 Consensus size: 48
31897214 CACATGTCGA
* * * *
31897224 GGCCGATGTCATTTTCCAGACATGGTCTTACACTAGTGTACATATCAAT
1 GGCCGATGTCATGTCCCAGAAATGGTCTTACACTAGTCTACATATC-AT
* * *
31897273 -GCCGATGTCATGTCCCAGAAATGGTCTTATACTGGCTCT-CCTATCAT
1 GGCCGATGTCATGTCCCAGAAATGGTCTTACACTAG-TCTACATATCAT
* * * * *
31897320 GGCCGACGCCATGTCCCA-AACATGGTATTACACTAGCACT-CATAAT-GT
1 GGCCGATGTCATGTCCCAGAA-ATGGTCTTACACTAG-TCTACAT-ATCAT
* *
31897368 GGCCGATGCCATG-CCTCAGACATGGTCTTACACTAG
1 GGCCGATGTCATGTCC-CAGAAATGGTCTTACACTAG
31897404 CGCACATATC
Statistics
Matches: 107, Mismatches: 18, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
47 6 0.06
48 96 0.90
49 5 0.05
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (48 bp):
GGCCGATGTCATGTCCCAGAAATGGTCTTACACTAGTCTACATATCAT
Found at i:31906512 original size:21 final size:20
Alignment explanation
Indices: 31906488--31906528 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
31906478 GCTTAAGATG
*
31906488 TGAATTGGATTTAATTGAATA
1 TGAATTGGATTAAATT-AATA
*
31906509 TGAATTGTATTAAATTAATA
1 TGAATTGGATTAAATTAATA
31906529 ATAAATTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (20 bp):
TGAATTGGATTAAATTAATA
Found at i:31907268 original size:25 final size:25
Alignment explanation
Indices: 31907221--31907268 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
31907211 TACAGCCCGG
* *
31907221 ATAAGCTTCCTGTTACATGGCTCAC
1 ATAAGCTTCCCGTTACATAGCTCAC
*
31907246 ATAAGCTTCCCGTTATATAGCTC
1 ATAAGCTTCCCGTTACATAGCTC
31907269 GAGAGAGAGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.27, G:0.15, T:0.33
Consensus pattern (25 bp):
ATAAGCTTCCCGTTACATAGCTCAC
Found at i:31910533 original size:47 final size:46
Alignment explanation
Indices: 31910479--31910594 Score: 151
Period size: 47 Copynumber: 2.5 Consensus size: 46
31910469 GAGCTGATGG
* * **
31910479 ATAGTAAGCTCTATTGAGCTGAAACGGTAAGCTCTGATGAGCTAAAA
1 ATAGTAAGCTCTA-TAAGCTGAAACAGTAAGCTCCAATGAGCTAAAA
*
31910526 ATAGTAAGCGTTTATAAGCTGAAACAGTAAGCTCCAATGAGCTAAAA
1 ATAGTAAGC-TCTATAAGCTGAAACAGTAAGCTCCAATGAGCTAAAA
*
31910573 ATAGTAAGCTCTTACAAGCTGA
1 ATAGTAAGCTC-TATAAGCTGA
31910595 TATATCGGTA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
46 1 0.02
47 56 0.93
48 3 0.05
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.25
Consensus pattern (46 bp):
ATAGTAAGCTCTATAAGCTGAAACAGTAAGCTCCAATGAGCTAAAA
Found at i:31910568 original size:23 final size:24
Alignment explanation
Indices: 31910481--31910584 Score: 88
Period size: 23 Copynumber: 4.4 Consensus size: 24
31910471 GCTGATGGAT
* *
31910481 AGTAAGCTCTATTGAGCT-GAAAC
1 AGTAAGCTCTAATGAGCTAAAAAC
* * *
31910504 GGTAAGCTCTGATGAGCTAAAAAT
1 AGTAAGCTCTAATGAGCTAAAAAC
* * *
31910528 AGTAAGCGT-TTATAAGCT-GAAAC
1 AGTAAGC-TCTAATGAGCTAAAAAC
* *
31910551 AGTAAGCTCCAATGAGCTAAAAAT
1 AGTAAGCTCTAATGAGCTAAAAAC
31910575 AGTAAGCTCT
1 AGTAAGCTCT
31910585 TACAAGCTGA
Statistics
Matches: 61, Mismatches: 16, Indels: 7
0.73 0.19 0.08
Matches are distributed among these distances:
22 1 0.02
23 31 0.51
24 28 0.46
25 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.25
Consensus pattern (24 bp):
AGTAAGCTCTAATGAGCTAAAAAC
Found at i:31910592 original size:24 final size:24
Alignment explanation
Indices: 31910505--31910592 Score: 81
Period size: 24 Copynumber: 3.7 Consensus size: 24
31910495 AGCTGAAACG
* *
31910505 GTAAGCTCTGATGAGCTAAAAATA
1 GTAAGCTCTTATAAGCTAAAAATA
* *
31910529 GTAAGCGT-TTATAAGCT-GAAACA
1 GTAAGC-TCTTATAAGCTAAAAATA
** *
31910552 GTAAGCTCCAATGAGCTAAAAATA
1 GTAAGCTCTTATAAGCTAAAAATA
*
31910576 GTAAGCTCTTACAAGCT
1 GTAAGCTCTTATAAGCT
31910593 GATATATCGG
Statistics
Matches: 48, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
22 1 0.02
23 16 0.33
24 30 0.62
25 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.19, T:0.25
Consensus pattern (24 bp):
GTAAGCTCTTATAAGCTAAAAATA
Found at i:31914346 original size:14 final size:14
Alignment explanation
Indices: 31914312--31914347 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
31914302 TACATTTCAC
*
31914312 TATTATGTCTTTTG
1 TATTATGTCTTTTA
31914326 TATTTATGTCTTTTA
1 TA-TTATGTCTTTTA
31914341 TATTATG
1 TATTATG
31914348 CATGCATAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.19, C:0.06, G:0.11, T:0.64
Consensus pattern (14 bp):
TATTATGTCTTTTA
Found at i:31916005 original size:20 final size:18
Alignment explanation
Indices: 31915981--31916032 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
31915971 ATAGTTTTTT
31915981 TATTAATTTAATATTAAA
1 TATTAATTTAATATTAAA
31915999 TTGATT-ATCTTAATATTAAA
1 -T-ATTAAT-TTAATATTAAA
31916019 T-TTAATTTAATATT
1 TATTAATTTAATATT
31916033 TATCTTGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 10 0.33
18 2 0.07
19 4 0.13
20 14 0.47
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (18 bp):
TATTAATTTAATATTAAA
Found at i:31916068 original size:69 final size:68
Alignment explanation
Indices: 31915940--31916074 Score: 180
Period size: 69 Copynumber: 2.0 Consensus size: 68
31915930 TTTTAATAGT
* ** * * *
31915940 TTAATATTAAATTTAATTAACACTTATTTTAATAGTTTTTTTATTAATTTAATATTAAATTGATT
1 TTAATATTAAATTTAATTAACACTTATCTTAATAAATATTATATTAATTTAAAATTAAATTGATT
31916005 ATC
66 ATC
* * *
31916008 TTAATATTAAATTTAATTTAATATTTATCTTGATAAATATTATATTAATTTAAAATTAAATTGAT
1 TTAATATTAAATTTAA-TTAACACTTATCTTAATAAATATTATATTAATTTAAAATTAAATTGAT
31916073 TA
65 TA
31916075 AGTTTAATTA
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
68 16 0.28
69 41 0.72
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (68 bp):
TTAATATTAAATTTAATTAACACTTATCTTAATAAATATTATATTAATTTAAAATTAAATTGATT
ATC
Found at i:31917274 original size:21 final size:22
Alignment explanation
Indices: 31917232--31917283 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
31917222 GGCAAAAGCA
31917232 TGCTAAAGAGAGTAGACTAAATG
1 TGCTAAAGAGAGTAGAC-AAATG
*
31917255 TGCTACAGAGAGTAGA-AAATTG
1 TGCTAAAGAGAGTAGACAAA-TG
*
31917277 TGATAAA
1 TGCTAAA
31917284 TGAACTGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
21 3 0.12
22 7 0.28
23 15 0.60
ACGTcount: A:0.44, C:0.08, G:0.25, T:0.23
Consensus pattern (22 bp):
TGCTAAAGAGAGTAGACAAATG
Found at i:31917414 original size:18 final size:19
Alignment explanation
Indices: 31917377--31917421 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
31917367 ATAAAGTTGT
* *
31917377 AAAAATTTGGTAGCTGGAA
1 AAAAATTAGGGAGCTGGAA
31917396 AAAAATTAGGGAGCT-GAA
1 AAAAATTAGGGAGCTGGAA
31917414 AAAAATTA
1 AAAAATTA
31917422 AAAGCTAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.51, C:0.04, G:0.22, T:0.22
Consensus pattern (19 bp):
AAAAATTAGGGAGCTGGAA
Found at i:31917744 original size:10 final size:8
Alignment explanation
Indices: 31917712--31917741 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
31917702 ATATGACTAT
*
31917712 TAAAAAGA
1 TAAAAATA
31917720 TAAAAATA
1 TAAAAATA
31917728 TAAAAATA
1 TAAAAATA
31917736 TAAAAA
1 TAAAAA
31917742 AATGTTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (8 bp):
TAAAAATA
Found at i:31919281 original size:21 final size:23
Alignment explanation
Indices: 31919256--31919313 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
31919246 AACTAAAAAC
*
31919256 TAAAAATAAATAT-AA-ATTTAT
1 TAAAAATAAATATGAATATTTAA
*
31919277 TAAAAAAAAAGTGATGAATATTTAA
1 TAAAAATAAA-T-ATGAATATTTAA
31919302 TAAAAATAAATA
1 TAAAAATAAATA
31919314 AAAGCAAGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 9 0.30
22 1 0.03
23 3 0.10
24 3 0.10
25 14 0.47
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (23 bp):
TAAAAATAAATATGAATATTTAA
Found at i:31920332 original size:27 final size:23
Alignment explanation
Indices: 31920273--31920333 Score: 77
Period size: 26 Copynumber: 2.5 Consensus size: 23
31920263 TTATTTAAAC
*
31920273 AAATACTCATATTTATAAAATTA
1 AAATATTCATATTTATAAAATTA
31920296 AAATATTCATATTTTATACTAAATTA
1 AAATATTCATA-TTTATA--AAATTA
31920322 AAATATGTCATA
1 AAATAT-TCATA
31920334 AGTCTATTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
23 10 0.30
24 6 0.18
26 12 0.36
27 5 0.15
ACGTcount: A:0.49, C:0.08, G:0.02, T:0.41
Consensus pattern (23 bp):
AAATATTCATATTTATAAAATTA
Found at i:31921283 original size:3 final size:3
Alignment explanation
Indices: 31921269--31921304 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
31921259 GGTCTCAGTT
*
31921269 TTC TTC TGC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
31921305 ACTGAAGCGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.33, G:0.03, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:31924511 original size:34 final size:34
Alignment explanation
Indices: 31924468--31924535 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
31924458 ATATATCTAT
31924468 GCAATTATACCAACTTGAGAAGCAAATCATTATA
1 GCAATTATACCAACTTGAGAAGCAAATCATTATA
*
31924502 GCAATTATACTAACTTGAGAAGCAAATCATTATA
1 GCAATTATACCAACTTGAGAAGCAAATCATTATA
31924536 AACTTAATAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (34 bp):
GCAATTATACCAACTTGAGAAGCAAATCATTATA
Found at i:31935252 original size:16 final size:16
Alignment explanation
Indices: 31935233--31935339 Score: 60
Period size: 16 Copynumber: 6.8 Consensus size: 16
31935223 ATTTTTCAAA
31935233 TTAAATTATTTTAGAT
1 TTAAATTATTTTAGAT
* *
31935249 TTAAA--CTTTTAGGT
1 TTAAATTATTTTAGAT
* * *
31935263 TCAAATTA-CTTAGAG
1 TTAAATTATTTTAGAT
* ** *
31935278 TTAAAGTTGTTTTTTAA
1 TTAAA-TTATTTTAGAT
*
31935295 TTGAATTATTTT-GAAT
1 TTAAATTATTTTAG-AT
* *
31935311 TTAAATTTTTTTGGAT
1 TTAAATTATTTTAGAT
31935327 TTAAATTATTTTA
1 TTAAATTATTTTA
31935340 AACTCAGATT
Statistics
Matches: 64, Mismatches: 21, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
14 11 0.17
15 8 0.12
16 37 0.58
17 8 0.12
ACGTcount: A:0.33, C:0.03, G:0.10, T:0.54
Consensus pattern (16 bp):
TTAAATTATTTTAGAT
Found at i:31936495 original size:11 final size:11
Alignment explanation
Indices: 31936481--31936505 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
31936471 TTTTTTATAA
31936481 TTTTTATGATT
1 TTTTTATGATT
31936492 TTTTTATGATT
1 TTTTTATGATT
31936503 TTT
1 TTT
31936506 AAAATTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTATGATT
Found at i:31936512 original size:20 final size:20
Alignment explanation
Indices: 31936470--31936512 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
31936460 GTATAACAAT
**
31936470 TTTTTTTATAATTTTTATGA
1 TTTTTTTATAATTTTTAAAA
*
31936490 TTTTTTTATGATTTTTAAAA
1 TTTTTTTATAATTTTTAAAA
31936510 TTT
1 TTT
31936513 AAAAAGGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.70
Consensus pattern (20 bp):
TTTTTTTATAATTTTTAAAA
Found at i:31939356 original size:16 final size:17
Alignment explanation
Indices: 31939335--31939372 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
31939325 TCAACAAACC
* *
31939335 AAAAAAAGTAAATAAA-
1 AAAAAAAGAAAAGAAAG
31939351 AAAAAAAGAAAAGAAAG
1 AAAAAAAGAAAAGAAAG
31939368 AAAAA
1 AAAAA
31939373 CATTACAGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (17 bp):
AAAAAAAGAAAAGAAAG
Found at i:31941587 original size:28 final size:28
Alignment explanation
Indices: 31941556--31941610 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
31941546 ATATTTTGTA
31941556 CTTAATTTTAATTAATATAGCAAATGTT
1 CTTAATTTTAATTAATATAGCAAATGTT
31941584 CTTAATTTTAATTAATATAGCAAATGT
1 CTTAATTTTAATTAATATAGCAAATGT
31941611 CTCATAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (28 bp):
CTTAATTTTAATTAATATAGCAAATGTT
Found at i:31941622 original size:28 final size:28
Alignment explanation
Indices: 31941558--31941622 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
31941548 ATTTTGTACT
* *
31941558 TAATTTTAATTAATATAGCAAATGTTCT
1 TAATATTAATTAATATAGCAAATGTTCA
*
31941586 TAATTTTAATTAATATAGCAAATGTCTCA
1 TAATATTAATTAATATAGCAAATGT-TCA
31941615 TAA-ATTAA
1 TAATATTAA
31941623 ATTTTTAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 29 0.85
29 5 0.15
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (28 bp):
TAATATTAATTAATATAGCAAATGTTCA
Found at i:31945140 original size:42 final size:43
Alignment explanation
Indices: 31945028--31945186 Score: 114
Period size: 43 Copynumber: 3.7 Consensus size: 43
31945018 ATCAAGTACA
* * *
31945028 ATGCCGATGTCCCAGACG-TGGTCTTACATGTAATTCAATATCG
1 ATGCCGATGTCCCAGA-GATGGTCTTATACGAAATTCAATATCG
** * * *
31945071 ATGCCTCTATCCCAGACAGGGTCTTATACGAAATT-AGATAT-G
1 ATGCCGATGTCCCAGAGATGGTCTTATACGAAATTCA-ATATCG
*
31945113 ATGCCGATGTCCCAGAGATGGTTTTATACGTAAATCTC-A-ATCG
1 ATGCCGATGTCCCAGAGATGGTCTTATACG-AAAT-TCAATATCG
* * * *
31945156 AGGCCTG-TGTCCCAGACACGGTCTTACACGA
1 ATGCC-GATGTCCCAGAGATGGTCTTATACGA
31945187 TGTAACAGAC
Statistics
Matches: 90, Mismatches: 19, Indels: 15
0.73 0.15 0.12
Matches are distributed among these distances:
42 29 0.32
43 59 0.66
44 2 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (43 bp):
ATGCCGATGTCCCAGAGATGGTCTTATACGAAATTCAATATCG
Found at i:31945171 original size:85 final size:85
Alignment explanation
Indices: 31945028--31945186 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 85
31945018 ATCAAGTACA
* * *
31945028 ATGCCGATGTCCCAGACGTGGTCTTACATGTAATTCAATATCGATGCCTCTATCCCAGACAGGGT
1 ATGCCGATGTCCCAGACGTGGTCTTACACGTAATTCAATATCGAGGCCTCTATCCCAGACACGGT
*
31945093 CTTATACGAAATTAGATATG
66 CTTACACGAAATTAGATATG
* * * *
31945113 ATGCCGATGTCCCAGA-GATGGTTTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGACAC
1 ATGCCGATGTCCCAGACG-TGGTCTTACACGT-AAT-TCAATATCGAGGCCTCTATCCCAGACAC
31945175 GGTCTTACACGA
63 GGTCTTACACGA
31945187 TGTAACAGAC
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
84 1 0.02
85 56 0.89
86 4 0.06
87 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACGTGGTCTTACACGTAATTCAATATCGAGGCCTCTATCCCAGACACGGT
CTTACACGAAATTAGATATG
Found at i:31953792 original size:28 final size:28
Alignment explanation
Indices: 31953737--31953848 Score: 147
Period size: 28 Copynumber: 4.1 Consensus size: 28
31953727 AGCATGGCTG
* *
31953737 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* *
31953763 CCAGATACAGATAATTGTGGCAGGGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
* *
31953791 CCAGAAACAGATATTTGTGGCAGGGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
*
31953819 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGTGGCAGAGCCA
31953847 CC
1 CC
31953849 GGAACGCTTC
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
26 4 0.05
27 6 0.08
28 67 0.87
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.18
Consensus pattern (28 bp):
CCAGAAACAGATAATTGTGGCAGAGCCA
Found at i:31955089 original size:3 final size:3
Alignment explanation
Indices: 31955081--31955134 Score: 53
Period size: 3 Copynumber: 18.7 Consensus size: 3
31955071 TATAGAGGAA
*
31955081 AAG AAG AAG AAG AAG AA- ATAG ATG AAG AAAG AAG AA- AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG A-AG AAG AAG -AAG AAG AAG AAG AAG AAG
31955126 -AG AA- AAG AA
1 AAG AAG AAG AA
31955135 TTGTCAGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
2 7 0.16
3 32 0.74
4 4 0.09
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.04
Consensus pattern (3 bp):
AAG
Found at i:31955109 original size:18 final size:17
Alignment explanation
Indices: 31955078--31955126 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 17
31955068 GGCTATAGAG
31955078 GAAAAGAAGAAGAAGAA
1 GAAAAGAAGAAGAAGAA
*
31955095 GAAATAGATGAAGAAAGAA
1 GAAA-AGAAGAAG-AAGAA
31955114 GAAAAGAAGAAGA
1 GAAAAGAAGAAGA
31955127 GAAAAGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 5 0.18
18 14 0.50
19 9 0.32
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (17 bp):
GAAAAGAAGAAGAAGAA
Found at i:31955133 original size:18 final size:17
Alignment explanation
Indices: 31955078--31955134 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 17
31955068 GGCTATAGAG
*
31955078 GAAAAGAAGAAGAAGAA
1 GAAAAGAAGAAGAAAAA
*
31955095 GAAATAGATGAAGAAAGAA
1 GAAA-AGAAGAAGAAA-AA
31955114 GAAAAGAAGAAGAGAAAA
1 GAAAAGAAGAAGA-AAAA
31955132 GAA
1 GAA
31955135 TTGTCAGAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 4 0.12
18 22 0.65
19 8 0.24
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.04
Consensus pattern (17 bp):
GAAAAGAAGAAGAAAAA
Found at i:31956830 original size:47 final size:47
Alignment explanation
Indices: 31956767--31957254 Score: 805
Period size: 47 Copynumber: 10.4 Consensus size: 47
31956757 CCCTTCGGGA
* *
31956767 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * * *
31956814 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
31956861 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGAC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
31956908 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
31956955 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
31957002 CTTATCACATATATACACTTTCACATTCATCACCTTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
31957049 CTTATCACATATATACACTTTCACATTCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
31957096 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
31957143 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
31957190 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
31957237 CTTATCACATATACACAC
1 CTTATCACATATATACAC
31957255 CTTGTACATC
Statistics
Matches: 414, Mismatches: 27, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 414 1.00
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:31960299 original size:40 final size:40
Alignment explanation
Indices: 31960206--31960542 Score: 457
Period size: 40 Copynumber: 8.5 Consensus size: 40
31960196 AAGCCAAGTA
* * * *
31960206 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATA-ATAACTCGCACAAATG
* * *
31960244 CCTTCGAGACATAGCCCGGATATAATAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * *
31960284 CCTTCGGGACTTAGCCCAGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
31960324 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * *
31960364 CCTTCGAGACTTAGCCCGGATGTAATAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
31960404 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
*
31960444 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
* * *
31960484 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAATAACTCGCACAAATG
31960524 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
31960543 TTATCATCCG
Statistics
Matches: 271, Mismatches: 24, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 11 0.04
39 16 0.06
40 244 0.90
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATG
Found at i:31961859 original size:54 final size:55
Alignment explanation
Indices: 31961785--31961965 Score: 305
Period size: 54 Copynumber: 3.3 Consensus size: 55
31961775 CTCAAAGCTC
*
31961785 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGGGAGCTCTTTT
1 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTCTTTT
*
31961840 TTTTTC-TTCTTTTTCTTTCTTCTATTCGACCAAGAACAACATGAGAGCTCTTTT
1 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTCTTTT
*
31961894 TTCTTC-TTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCT-TTTT
1 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTCTTTT
*
31961947 TTTTTCTTTCTTTTCCTTT
1 TTTTTCTTTCTTTTTCTTT
31961966 TTTCATCATC
Statistics
Matches: 119, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
53 9 0.08
54 104 0.87
55 6 0.05
ACGTcount: A:0.17, C:0.22, G:0.10, T:0.51
Consensus pattern (55 bp):
TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAGAGCTCTTTT
Found at i:31964236 original size:19 final size:19
Alignment explanation
Indices: 31964212--31964256 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
31964202 CATTACATGG
31964212 TCAATTAACCACATAAGGA
1 TCAATTAACCACATAAGGA
31964231 TCAATTAACCACATAAGGA
1 TCAATTAACCACATAAGGA
*
31964250 TCCATTA
1 TCAATTA
31964257 GTCCAAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.44, C:0.22, G:0.09, T:0.24
Consensus pattern (19 bp):
TCAATTAACCACATAAGGA
Found at i:31968733 original size:48 final size:46
Alignment explanation
Indices: 31968628--31968794 Score: 160
Period size: 46 Copynumber: 3.6 Consensus size: 46
31968618 TATGTGTGCT
31968628 AGTGTAAGACATGTCTAGGACATGCATCAGCCACAGCATGAGAGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCACAGCATGAGAGCC
* * * * * *
31968674 AGTGTAAGACATGTTTGGGACATGCATCCGCCTCGAGATATTTA-AGCC
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCAC-AG-CA-TGAGAGCC
* * * * *
31968722 AGTGTAAGACATGTCTAGGACATGCGTC-GGCATTGAG-ACGAGAGCT
1 AGTGTAAGACATGTCTAGGACATGCATCAGCCA--CAGCATGAGAGCC
*
31968768 AGTGTAAGACATGTCTGGGACATGCAT
1 AGTGTAAGACATGTCTAGGACATGCAT
31968795 AAACCTCGCG
Statistics
Matches: 98, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 59 0.60
47 4 0.04
48 32 0.33
49 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCCACAGCATGAGAGCC
Found at i:31968777 original size:94 final size:94
Alignment explanation
Indices: 31968628--31968941 Score: 268
Period size: 94 Copynumber: 3.3 Consensus size: 94
31968618 TATGTGTGCT
* * * * *
31968628 AGTGTAAGACATGTCTAGGACAT-GCATCAGCCA--CAGCATGAGAGCCAGTGTAAGACATGTTT
1 AGTGTAAGACATGTCTAGGACATGGCGTC-GGCATTGAG-A-GAGAGCTAGTGTAAGACATGTCT
* **
31968690 GGGACATGCATCCGCCTCGAGATATTTAAGCC
63 GGGACATGCATCAGCCTCGAGATATAAAAGCC
31968722 AGTGTAAGACATGTCTAGGACAT-GCGTCGGCATTGAGACGAGAGCTAGTGTAAGACATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGGCGTCGGCATTGAGA-GAGAGCTAGTGTAAGACATGTCTGG
* * * * *
31968786 GACATGCATAAACCTCGCGATATACAAGCT
65 GACATGCATCAGCCTCGAGATATAAAAGCC
* * * * * * *
31968816 AGTGTAAGAC-TGGTCTGGGACATGGCGTCAG-TTTGTG-GTGTG-TCAGTGTAAGACCTGTCTG
1 AGTGTAAGACAT-GTCTAGGACATGGCGTCGGCATTGAGAGAGAGCT-AGTGTAAGACATGTCTG
* * *
31968877 GGACATGGCATCGGCCTC-ATTATATGAAAGCC
64 GGACAT-GCATCAGCCTCGA-GATATAAAAGCC
*
31968909 AGTGTAAGACCATGTCTGGGACATGGCGTCGGC
1 AGTGTAAGA-CATGTCTAGGACATGGCGTCGGC
31968942 GTCTTAACCC
Statistics
Matches: 181, Mismatches: 29, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
91 1 0.01
92 25 0.14
93 29 0.16
94 117 0.65
95 9 0.05
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTAGGACATGGCGTCGGCATTGAGAGAGAGCTAGTGTAAGACATGTCTGGG
ACATGCATCAGCCTCGAGATATAAAAGCC
Found at i:31979288 original size:50 final size:49
Alignment explanation
Indices: 31979163--31979338 Score: 192
Period size: 50 Copynumber: 3.5 Consensus size: 49
31979153 TGAGGTCGCA
* * * **
31979163 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACT-GTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGA-TAG-G-TCACG
** * *
31979214 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGAGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGAT-AGGTCACG
* * * *
31979264 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATAGGTCACG
31979313 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
31979339 TGCATACCAG
Statistics
Matches: 106, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
49 30 0.28
50 42 0.40
51 33 0.31
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATAGGTCACG
Found at i:31982192 original size:4 final size:5
Alignment explanation
Indices: 31982138--31982210 Score: 51
Period size: 5 Copynumber: 13.8 Consensus size: 5
31982128 GAAGTATAAG
* * *
31982138 AAAAT AAAAAT AAAAC AAAA- CAACT AAACAT ATAAAT AAACAT AAACAT
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAA-AT A-AAAT AAA-AT AAA-AT
31982187 -AAAT AAAAT AAAAT AAAAGT AAAA
1 AAAAT AAAAT AAAAT AAAA-T AAAA
31982211 AGAAAACAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
4 4 0.07
5 27 0.48
6 23 0.41
7 2 0.04
ACGTcount: A:0.74, C:0.08, G:0.01, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:31982272 original size:77 final size:78
Alignment explanation
Indices: 31982184--31982334 Score: 286
Period size: 77 Copynumber: 1.9 Consensus size: 78
31982174 TAAACATAAA
*
31982184 CATAAATAAAATAAAATAAAAGTAAAAAGAAAACAAATTTAATCAATGATCCTCATCGTCGGAGG
1 CATAAATAAAATAAAATAAAAGTAAAAAGAAAACAAATTAAATCAATGATCCTCATCGTCGGAGG
31982249 CATTAATAGTAAG
66 CATTAATAGTAAG
31982262 CATAAA-AAAATAAAATAAAAGTAAAAAGAAAACAAATTAAATCAATGATCCTCATCGTCGGAGG
1 CATAAATAAAATAAAATAAAAGTAAAAAGAAAACAAATTAAATCAATGATCCTCATCGTCGGAGG
31982326 CATTAATAG
66 CATTAATAG
31982335 GGTGTGTCAC
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
77 66 0.92
78 6 0.08
ACGTcount: A:0.54, C:0.12, G:0.13, T:0.22
Consensus pattern (78 bp):
CATAAATAAAATAAAATAAAAGTAAAAAGAAAACAAATTAAATCAATGATCCTCATCGTCGGAGG
CATTAATAGTAAG
Found at i:31985631 original size:43 final size:43
Alignment explanation
Indices: 31985578--31985739 Score: 184
Period size: 43 Copynumber: 3.8 Consensus size: 43
31985568 ATCGAGATGT
* *
31985578 ATTACATGTAAGACCATGTATGGGACATTGGCATTGTATTATG
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATG
* * *
31985621 ATTACGTGTAAGACCATGTCTGAGACATTGGCATCGTATTATT
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATG
* * * * *
31985664 ATTTCGTGTAAGACCCTTTCTGGGACAGTGGCATCG-ATATATG
1 ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTAT-TATG
* * *
31985707 ATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATTACATGTAAGACCATGTCTGGGACATTGGCAT
31985740 TGTACGAGCT
Statistics
Matches: 101, Mismatches: 17, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
42 8 0.08
43 93 0.92
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
ATTACATGTAAGACCATGTCTGGGACATTGGCATCGTATTATG
Found at i:31986026 original size:32 final size:32
Alignment explanation
Indices: 31985989--31986053 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
31985979 GGAAATAGTC
*
31985989 ATATGATGACCTTATTTGTATATGGCTTACTA
1 ATATGATAACCTTATTTGTATATGGCTTACTA
*
31986021 ATATGATAACTTTATTTGTATATGGCTTACTA
1 ATATGATAACCTTATTTGTATATGGCTTACTA
31986053 A
1 A
31986054 GCTTTTAAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.31, C:0.11, G:0.14, T:0.45
Consensus pattern (32 bp):
ATATGATAACCTTATTTGTATATGGCTTACTA
Found at i:31988384 original size:266 final size:268
Alignment explanation
Indices: 31987906--31988438 Score: 998
Period size: 266 Copynumber: 2.0 Consensus size: 268
31987896 AGTAGCAAAT
*
31987906 ATGTTGAGTTTTGGTAATTTGAATGCATATATGTGTTTGATCATTTAGGTCAGTTTGGAGACTTT
1 ATGTTGAGTTTTGGTAATTTGAATGCATATATGTGTTTGATCATTTAGGTAAGTTT-G-GACTTT
*
31987971 GTTGGCATGTATTTAAATGGCCAATTGAGGTTCCCATGAGTGTCATGATTGTATGTTATGTCATA
64 GTTGGCATGTATTTAAATGGCCAATTGAGGTGCCCATGAGTGTCATGATTGTATGTTATGTCATA
31988036 ACATGTTACAAGCTTGATGTTGGTTGGTTTTGGATGCCTATCTATGTTATGGACATATGCAAATT
129 ACATGTTACAAGCTTGATGTTGGTTGGTTTTGGATGCCTATCTATGTTATGGACATATGCAAATT
31988101 GTTGCGTTTAGGTTGGTACCAATTTGGGTGAGAAATATGGCTTGAAAAATGGCCTATTTTTGTCC
194 GTTGCGTTTAGGTTGGTACCAATTTGGGTGAGAAATATGGCTTGAAAAATGGCCTATTTTTGTCC
31988166 ACATGGGTAG
259 ACATGGGTAG
31988176 ATGTTGAGTTTTGGTAATTTGAATGCATATATGTGTTTGATCATTTAGGTAAGTTT-G-CTTTGT
1 ATGTTGAGTTTTGGTAATTTGAATGCATATATGTGTTTGATCATTTAGGTAAGTTTGGACTTTGT
31988239 TGGCATGTATTTAAATGGCCAATTGAGGTGCCCATGAGTGTCATGATTGTATGTTATGTCATAAC
66 TGGCATGTATTTAAATGGCCAATTGAGGTGCCCATGAGTGTCATGATTGTATGTTATGTCATAAC
*
31988304 ATGTTACAAGCTTGATGTTGGTTGGTTTTGGATGCCTATCTATGTTATGGTCATATGCAAATTGT
131 ATGTTACAAGCTTGATGTTGGTTGGTTTTGGATGCCTATCTATGTTATGGACATATGCAAATTGT
*
31988369 TGCGTTTAGGTTGGTACCAATTTGGGTGAGAAATATGGCTTGAAAAATGGTCTATTTTTGTCCAC
196 TGCGTTTAGGTTGGTACCAATTTGGGTGAGAAATATGGCTTGAAAAATGGCCTATTTTTGTCCAC
31988434 ATGGG
261 ATGGG
31988439 CAGAGACATG
Statistics
Matches: 259, Mismatches: 4, Indels: 4
0.97 0.01 0.01
Matches are distributed among these distances:
266 203 0.78
267 1 0.00
270 55 0.21
ACGTcount: A:0.24, C:0.11, G:0.26, T:0.40
Consensus pattern (268 bp):
ATGTTGAGTTTTGGTAATTTGAATGCATATATGTGTTTGATCATTTAGGTAAGTTTGGACTTTGT
TGGCATGTATTTAAATGGCCAATTGAGGTGCCCATGAGTGTCATGATTGTATGTTATGTCATAAC
ATGTTACAAGCTTGATGTTGGTTGGTTTTGGATGCCTATCTATGTTATGGACATATGCAAATTGT
TGCGTTTAGGTTGGTACCAATTTGGGTGAGAAATATGGCTTGAAAAATGGCCTATTTTTGTCCAC
ATGGGTAG
Found at i:31990319 original size:10 final size:10
Alignment explanation
Indices: 31990304--31990330 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
31990294 TTTGAGCATT
31990304 CAAATTCAAG
1 CAAATTCAAG
31990314 CAAATTCAAG
1 CAAATTCAAG
31990324 CAAATTC
1 CAAATTC
31990331 CATCATTCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.22
Consensus pattern (10 bp):
CAAATTCAAG
Found at i:31996388 original size:4 final size:4
Alignment explanation
Indices: 31996379--31996472 Score: 52
Period size: 4 Copynumber: 22.2 Consensus size: 4
31996369 CTAAAATGGG
*
31996379 ATAA ATAA ATAA ATGAA ATAAA CATAA ATAGAA ATAGA ATAA ATTA ATAA
1 ATAA ATAA ATAA AT-AA AT-AA -ATAA AT--AA ATA-A ATAA ATAA ATAA
* *
31996429 ATAA TTAA AAAA ATAA GA-AA ATAA GA-AA ATAA GA-AA AT-A ATAA A
1 ATAA ATAA ATAA ATAA -ATAA ATAA -ATAA ATAA -ATAA ATAA ATAA A
31996473 GAATTAAAAA
Statistics
Matches: 71, Mismatches: 7, Indels: 24
0.70 0.07 0.24
Matches are distributed among these distances:
3 6 0.08
4 44 0.62
5 15 0.21
6 6 0.08
ACGTcount: A:0.71, C:0.01, G:0.06, T:0.21
Consensus pattern (4 bp):
ATAA
Found at i:31996420 original size:15 final size:13
Alignment explanation
Indices: 31996381--31996432 Score: 52
Period size: 15 Copynumber: 3.8 Consensus size: 13
31996371 AAAATGGGAT
31996381 AAATAAATAAATG
1 AAATAAATAAATG
31996394 AAATAAACATAAATAG
1 AAAT-AA-ATAAAT-G
31996410 AAATAGAATAAAT-
1 AAATA-AATAAATG
*
31996423 TAATAAATAA
1 AAATAAATAA
31996433 TTAAAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
12 5 0.15
13 8 0.24
14 2 0.06
15 13 0.38
16 6 0.18
ACGTcount: A:0.69, C:0.02, G:0.06, T:0.23
Consensus pattern (13 bp):
AAATAAATAAATG
Found at i:31996457 original size:16 final size:16
Alignment explanation
Indices: 31996438--31996468 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
31996428 AATAATTAAA
31996438 AAAATAAGAAAATAAG
1 AAAATAAGAAAATAAG
31996454 AAAATAAGAAAATAA
1 AAAATAAGAAAATAA
31996469 TAAAGAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (16 bp):
AAAATAAGAAAATAAG
Found at i:32002899 original size:18 final size:17
Alignment explanation
Indices: 32002867--32002902 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
32002857 TTCAACGTAT
*
32002867 AAATAAAGATAAAAATA
1 AAATAAAAATAAAAATA
32002884 AAATAAAAAGTAAAAATA
1 AAATAAAAA-TAAAAATA
32002902 A
1 A
32002903 TAGGTGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.17
Consensus pattern (17 bp):
AAATAAAAATAAAAATA
Found at i:32008902 original size:64 final size:64
Alignment explanation
Indices: 32008797--32009003 Score: 197
Period size: 67 Copynumber: 3.1 Consensus size: 64
32008787 CATCATGTGT
* *
32008797 ACAAGAAAGCTACGAGACATTATAATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TA-AATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
32008862 TAG
62 TAG
* * * * * * *
32008865 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGT
32008930 AG
63 AG
* *
32008932 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGCT-CACCATGT-
1 ACAAGAGAGCTACGAGATAAA-TGTAGCTAGGTCGCATGGGTGGTACTATGTG-TACACCATGTA
32008993 G
64 G
32008994 TACAAGAGAG
1 -ACAAGAGAG
32009004 TCGAACTATA
Statistics
Matches: 115, Mismatches: 18, Indels: 17
0.77 0.12 0.11
Matches are distributed among these distances:
62 1 0.01
63 18 0.16
64 25 0.22
65 2 0.02
66 22 0.19
67 31 0.27
68 16 0.14
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATAAATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:32009409 original size:28 final size:29
Alignment explanation
Indices: 32009378--32009459 Score: 105
Period size: 28 Copynumber: 2.9 Consensus size: 29
32009368 AGTATTGATG
32009378 ATGACACTTAGTGTGCGAAACATCCGA-A
1 ATGACACTTAGTGTGCGAAACATCCGAGA
* ** *
32009406 ATGACACTTAGTGTGAGAAGTAT-CGAGG
1 ATGACACTTAGTGTGCGAAACATCCGAGA
*
32009434 ATGGCACTTAGTGTGCGAAACATCCG
1 ATGACACTTAGTGTGCGAAACATCCG
32009460 GTATAGCACT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
27 3 0.07
28 39 0.89
29 2 0.05
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (29 bp):
ATGACACTTAGTGTGCGAAACATCCGAGA
Found at i:32009468 original size:28 final size:27
Alignment explanation
Indices: 32009382--32009485 Score: 86
Period size: 28 Copynumber: 3.7 Consensus size: 27
32009372 TTGATGATGA
*
32009382 CACTTAGTGTGCGAAACATCCGAAATG
1 CACTTAGTGTGCGAAACATCCGGAATG
* ** *
32009409 ACACTTAGTGTGAGAAGTAT-CGAGGATGG
1 -CACTTAGTGTGCGAAACATCCG-GAAT-G
*
32009438 CACTTAGTGTGCGAAACATCCGGTATAG
1 CACTTAGTGTGCGAAACATCCGGAAT-G
*
32009466 CACTTAGCGTGC-AAGACATC
1 CACTTAGTGTGCGAA-ACATC
32009486 GATTGTACAG
Statistics
Matches: 61, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
27 4 0.07
28 54 0.89
29 3 0.05
ACGTcount: A:0.31, C:0.20, G:0.26, T:0.23
Consensus pattern (27 bp):
CACTTAGTGTGCGAAACATCCGGAATG
Found at i:32009472 original size:56 final size:56
Alignment explanation
Indices: 32009300--32009459 Score: 238
Period size: 54 Copynumber: 2.9 Consensus size: 56
32009290 AAACGAACGG
32009300 CACTTAGTGTACGAAGTATTGAGGATGGCACTTAGTGTGC-AAGACATCCGAAATGA
1 CACTTAGTGTACGAAGTATTGAGGATGGCACTTAGTGTGCGAA-ACATCCGAAATGA
* * *
32009356 CAC--AGTGTATGAAGTATTGATGATGACACTTAGTGTGCGAAACATCCGAAATGA
1 CACTTAGTGTACGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAATGA
*
32009410 CACTTAGTGTGA-GAAGTATCGAGGATGGCACTTAGTGTGCGAAACATCCG
1 CACTTAGTGT-ACGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCG
32009460 GTATAGCACT
Statistics
Matches: 94, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
54 48 0.51
55 2 0.02
56 43 0.46
57 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (56 bp):
CACTTAGTGTACGAAGTATTGAGGATGGCACTTAGTGTGCGAAACATCCGAAATGA
Found at i:32009487 original size:56 final size:56
Alignment explanation
Indices: 32009320--32009487 Score: 150
Period size: 56 Copynumber: 3.0 Consensus size: 56
32009310 ACGAAGTATT
* * * * *
32009320 GAGGATGGCACTTAGTGTGC-AAGACATCCGAAATGACAC--AGTGT-ATGAAGTATT
1 GAGGATGACACTTAGTGTGCGAA-ACATCCGAAATGACACTTAGCGTGA-CAAGCATC
* * * *
32009374 GATGATGACACTTAGTGTGCGAAACATCCGAAATGACACTTAGTGTGAGAAGTATC
1 GAGGATGACACTTAGTGTGCGAAACATCCGAAATGACACTTAGCGTGACAAGCATC
* **
32009430 GAGGATGGCACTTAGTGTGCGAAACATCCGGTAT-AGCACTTAGCGTG-CAAGACATC
1 GAGGATGACACTTAGTGTGCGAAACATCCGAAATGA-CACTTAGCGTGACAAG-CATC
32009486 GA
1 GA
32009488 TTGTACAGTG
Statistics
Matches: 98, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
54 34 0.35
55 6 0.06
56 57 0.58
57 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.27, T:0.23
Consensus pattern (56 bp):
GAGGATGACACTTAGTGTGCGAAACATCCGAAATGACACTTAGCGTGACAAGCATC
Found at i:32015016 original size:33 final size:33
Alignment explanation
Indices: 32014979--32015071 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
32014969 CTATAGGCCA
* *
32014979 TACTGTTATCTGAAAAGGGGCTAAGGCCTAGT-T
1 TACTGTTATCTGAAAA-GGGCTTAGGCCTAGTAC
* *
32015012 TACTG-TATTTTGAAAAGGGCTTCGGCCTAGTAC
1 TACTGTTA-TCTGAAAAGGGCTTAGGCCTAGTAC
* *
32015045 CACTGTTATCTGAATAGGGCTTAGGCC
1 TACTGTTATCTGAAAAGGGCTTAGGCC
32015072 CAATGGACTT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
32 15 0.31
33 32 0.65
34 2 0.04
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (33 bp):
TACTGTTATCTGAAAAGGGCTTAGGCCTAGTAC
Found at i:32026405 original size:22 final size:22
Alignment explanation
Indices: 32026377--32026498 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
32026367 TTCCACATCC
32026377 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
32026399 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
32026423 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
32026446 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
32026470 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
32026493 ATCACA
1 ATCACA
32026499 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:32026675 original size:49 final size:47
Alignment explanation
Indices: 32026349--32026911 Score: 810
Period size: 47 Copynumber: 11.8 Consensus size: 47
32026339 CCCTTCGGGA
* * *
32026349 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
32026396 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
32026443 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
32026490 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
32026537 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
32026584 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
32026631 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
32026680 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
32026727 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
32026776 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
32026825 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
32026874 CTTATCACATATATATACACTTTCACATTCATCACATT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATT
32026912 TTCACATTTA
Statistics
Matches: 488, Mismatches: 22, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 269 0.55
49 217 0.44
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:32028442 original size:56 final size:56
Alignment explanation
Indices: 32028375--32028550 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
32028365 TATTAGTTTA
*
32028375 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
32028431 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
32028487 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
32028543 TTGCCCAT
1 TTGCCCAT
32028551 CATCCCTTGT
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:32030283 original size:23 final size:23
Alignment explanation
Indices: 32030257--32030304 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
32030247 CACGCCTATT
32030257 TGGAGGTAAAGCACACA-CCCGTG
1 TGGAGGTAAAGCACA-AGCCCGTG
*
32030280 TGGAGGTAAAGTACAAGCCCGTG
1 TGGAGGTAAAGCACAAGCCCGTG
32030303 TG
1 TG
32030305 CTTGGGGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 1 0.04
23 22 0.96
ACGTcount: A:0.29, C:0.21, G:0.33, T:0.17
Consensus pattern (23 bp):
TGGAGGTAAAGCACAAGCCCGTG
Found at i:32048359 original size:38 final size:38
Alignment explanation
Indices: 32048311--32048550 Score: 327
Period size: 38 Copynumber: 6.3 Consensus size: 38
32048301 GGCACAAAGG
* * * *
32048311 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
32048349 CCCTGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* ** * *
32048387 CCTGGATATTTTACCAGCAAGAAGCCTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
*
32048426 GCCCGGATATAATACCAGCATGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
32048465 CCCGGATATATTACCAGCACGAAGCCTGCGAGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
32048503 CCCGGATATAATACCAGCACGAAGCCTACGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
32048541 CTCGGATATA
1 CCCGGATATA
32048551 CATCGAATAT
Statistics
Matches: 177, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
38 139 0.79
39 10 0.06
40 28 0.16
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:32048518 original size:116 final size:115
Alignment explanation
Indices: 32048310--32048550 Score: 333
Period size: 116 Copynumber: 2.1 Consensus size: 115
32048300 AGGCACAAAG
* * * *
32048310 GCCCGAATATAATACCAGCACTAGGCCTGCGGGATTTATCCCTGATATAATACCAGCACGAAGCC
1 GCCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
* * ** * *
32048375 TGCGGGATTTAACCTGGATATTTTACCAGCAAGAAGCCTGCGGGTCTTTAA
66 TGCGAGATTTAACCCGGATATAATACCAGCAAGAAGCCTACGGG-ATTTAA
*
32048426 GCCCGGATATAATACCAGCA-TGAAGCCTGCGGGATTTAACCCGGATATATTACCAGCACGAAGC
1 GCCCGGATATAATACCAGCACT-AAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGC
*
32048490 CTGCGAGATTTAACCCGGATATAATACCAGCACGAAGCCTACGGGATTTAA
65 CTGCGAGATTTAACCCGGATATAATACCAGCAAGAAGCCTACGGGATTTAA
*
32048541 -CTCGGATATA
1 GCCCGGATATA
32048551 CATCGAATAT
Statistics
Matches: 111, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
114 9 0.08
115 6 0.05
116 96 0.86
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (115 bp):
GCCCGGATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCC
TGCGAGATTTAACCCGGATATAATACCAGCAAGAAGCCTACGGGATTTAA
Found at i:32056391 original size:23 final size:23
Alignment explanation
Indices: 32056364--32056413 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 23
32056354 TAGATACAAA
32056364 TTTTATTTTCAGTAATT-TTTTAT
1 TTTTA-TTTCAGTAATTATTTTAT
*
32056387 TTTTATTTCAGTTATTAATTTTAT
1 TTTTATTTCAGTAATT-ATTTTAT
32056411 TTT
1 TTT
32056414 AAATTCTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 10 0.42
23 5 0.21
24 9 0.38
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (23 bp):
TTTTATTTCAGTAATTATTTTAT
Found at i:32058976 original size:23 final size:21
Alignment explanation
Indices: 32058950--32058991 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
32058940 AAATGAAATG
32058950 TTGTAAAATTTTGTATATTTGAA
1 TTGTAAAATTTT-TAT-TTTGAA
*
32058973 TTGTCAAATTTTTATTTTG
1 TTGTAAAATTTTTATTTTG
32058992 GATTTTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 3 0.17
23 11 0.61
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.57
Consensus pattern (21 bp):
TTGTAAAATTTTTATTTTGAA
Found at i:32059033 original size:25 final size:25
Alignment explanation
Indices: 32059001--32059057 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
32058991 GGATTTTAAT
32059001 TAGG-TTAGAAAGTATTAATTAGAG
1 TAGGATTAGAAAGTATTAATTAGAG
32059025 TAGGATTAGAAAGTATTAATTAGAG
1 TAGGATTAGAAAGTATTAATTAGAG
32059050 TAGGATTA
1 TAGGATTA
32059058 AAGCCTTATA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 4 0.12
25 28 0.88
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (25 bp):
TAGGATTAGAAAGTATTAATTAGAG
Found at i:32062926 original size:93 final size:93
Alignment explanation
Indices: 32062767--32062937 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
32062757 GCCCCTAAGT
* * * *
32062767 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
32062832 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
32062860 GAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
*
32062925 CGAGTTTGGATGC
66 CGAGTTCGGATGC
32062938 TCAACCATCC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:32062927 original size:46 final size:46
Alignment explanation
Indices: 32062762--32062930 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 46
32062752 AACCCGCCCC
* * * * * *
32062762 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
32062808 TAAATGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
32062856 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
32062901 TAAGTGAACTCGGACTCAACTCAACGAGTT
1 TAAGTGAACTCAGACTCAACTCAACGAGTT
32062931 TGGATGCTCA
Statistics
Matches: 100, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 53 0.53
47 29 0.29
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:32066285 original size:30 final size:30
Alignment explanation
Indices: 32066251--32066316 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
32066241 GTGTTCTAGG
* *
32066251 CCGTGTGGTACTCACGGTTAAGACACACGC
1 CCGTGTGGTACACACGGCTAAGACACACGC
* *
32066281 CCGTGTGGTACACACGGCTGAGACACATGC
1 CCGTGTGGTACACACGGCTAAGACACACGC
32066311 CCGTGT
1 CCGTGT
32066317 TCCAAGCTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.20
Consensus pattern (30 bp):
CCGTGTGGTACACACGGCTAAGACACACGC
Found at i:32066347 original size:42 final size:42
Alignment explanation
Indices: 32066283--32066400 Score: 191
Period size: 42 Copynumber: 2.8 Consensus size: 42
32066273 ACACACGCCC
*
32066283 GTGTGGTACACACGGCTGAGACACATGCCCGTGTTCCAAGCT
1 GTGTGGTACACACGGCTGAGACACACGCCCGTGTTCCAAGCT
* * *
32066325 GTGTGGTACACACGGCTAAGACACACGCCCATGTTCCATGCT
1 GTGTGGTACACACGGCTGAGACACACGCCCGTGTTCCAAGCT
*
32066367 GTGTGGTACACATGGCTGAGACACACGCCCGTGT
1 GTGTGGTACACACGGCTGAGACACACGCCCGTGT
32066401 CTCTGCTCAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (42 bp):
GTGTGGTACACACGGCTGAGACACACGCCCGTGTTCCAAGCT
Found at i:32071532 original size:48 final size:47
Alignment explanation
Indices: 32071369--32071680 Score: 233
Period size: 48 Copynumber: 6.6 Consensus size: 47
32071359 GTGGTAGGTG
* * *
32071369 AGCTAGTGTAAGACATGTTTGGGACATGCATCAGC--C-ACATCATGAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGAT-AT-AA
* * * * ** *
32071415 TGCTAGTGTAAGACATGTCTGGGACACGCATCGGGATT-GAGA-CGAG
1 AGCTAGTGTAAGACATGTCTGGGACATGCATC-AGCTTCGAGATATAA
*
32071461 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTTCGGGATATACA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGATATA-A
* *
32071509 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGGGATATACA
1 AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGATATA-A
* * * * *** * *
32071557 AGCTAGTGTAAGACCTGCCTGGGACATGGTATCGACACTAATAGAT-GAG
1 AGCTAGTGTAAGACATGTCTGGGACAT-GCATC-A-GCTTCGAGATATAA
* * * *
32071606 AGCCAGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGAA
1 AGCTAGTGTAAGACATGTCTGGGACAT-GCATCAGCTTCGAGATAT-AA
*
32071655 AG-TCAGTGTAAGACCTGTCTGGGACA
1 AGCT-AGTGTAAGACATGTCTGGGACA
32071681 CGGCATCGAC
Statistics
Matches: 213, Mismatches: 40, Indels: 23
0.77 0.14 0.08
Matches are distributed among these distances:
45 3 0.01
46 64 0.30
47 6 0.03
48 73 0.34
49 61 0.29
50 2 0.01
51 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (47 bp):
AGCTAGTGTAAGACATGTCTGGGACATGCATCAGCTTCGAGATATAA
Found at i:32071619 original size:49 final size:47
Alignment explanation
Indices: 32071556--32071731 Score: 176
Period size: 49 Copynumber: 3.6 Consensus size: 47
32071546 CGGGATATAC
* * *
32071556 AAGCTAGTGTAAGACCTGCCTGGGACATGGTATCGACACTAATAGATGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTAATA-ATGA
* *
32071605 GAGCCAGTGTAAGACCTGTCTGGGACATGGCATC-AGCCTCGATATATGA
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CCT-AATA-ATGA
* * * *
32071654 AAGTCAGTGTAAGACCTGTCTGGGACACGGCATCGACTTTAAT-ATGC
1 AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGAC-CTAATAATGA
* *
32071701 TAGCCAGTGTAAGACCATGTCTGGGATATGG
1 AAGCCAGTGTAAGACC-TGTCTGGGACATGG
32071732 AGTCAGTATT
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
47 17 0.16
48 15 0.14
49 72 0.68
50 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (47 bp):
AAGCCAGTGTAAGACCTGTCTGGGACATGGCATCGACCTAATAATGA
Found at i:32071669 original size:98 final size:96
Alignment explanation
Indices: 32071513--32071731 Score: 273
Period size: 98 Copynumber: 2.3 Consensus size: 96
32071503 TATACAAGCT
* *
32071513 AGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGGGATATACAAGCTAGTGTAAGACCTGCCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGAGATATACAAGCTAGTGTAAGACCTGCCT
* *
32071577 GGGACATGGTATCGACACTAATAGATGAGAGCC
66 GGGACACGGCATCGACACTAAT--ATGAGAGCC
* *
32071610 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGATATATGA-AAG-TCAGTGTAAGACCTGT
1 AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGAGATAT-ACAAGCT-AGTGTAAGACCTGC
** **
32071673 CTGGGACACGGCATCGACTTTAATATGCTAGCC
64 CTGGGACACGGCATCGACACTAATATGAGAGCC
*
32071706 AGTGTAAGACCATGTCTGGGATATGG
1 AGTGTAAGACC-TGTCTGGGACATGG
32071732 AGTCAGTATT
Statistics
Matches: 107, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
96 18 0.17
97 36 0.34
98 52 0.49
99 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (96 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCAGCCTCGAGATATACAAGCTAGTGTAAGACCTGCCT
GGGACACGGCATCGACACTAATATGAGAGCC
Found at i:32077400 original size:22 final size:21
Alignment explanation
Indices: 32077350--32077400 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
32077340 CTCAACTTGG
32077350 AAAATTTTTCCTAAGTGTCAT
1 AAAATTTTTCCTAAGTGTCAT
32077371 AAAATTTTTCCTAAGTGTCAT
1 AAAATTTTTCCTAAGTGTCAT
32077392 AAAATTTTT
1 AAAATTTTT
32077401 AGAAGCTCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.45
Consensus pattern (21 bp):
AAAATTTTTCCTAAGTGTCAT
Found at i:32091691 original size:568 final size:568
Alignment explanation
Indices: 32090616--32092319 Score: 3374
Period size: 568 Copynumber: 3.0 Consensus size: 568
32090606 CTTATAGCTA
*
32090616 CTAGAATTTAACTTTTGCATTTTATGCAATTTAGTCCTTCTCGTAATTAAACACTTAATCAATAA
1 CTAGAATTTAACTTTTGCATTTTATGCAATTTAGTCCTTCTCGTAATTAAACACTTAATCGATAA
32090681 AATTTTCATATCAAAATTTTCACACGCCATTTCTAACATATTACAGGCCATATGATAAAATTAAA
66 AATTTTCATATCAAAATTTTCACACGCCATTTCTAACATATTACAGGCCATATGATAAAATTAAA
32090746 ATAAAATATATTTTGGGTCAGATTTGTGGTCCCGAAACCACTGTTCGGATTTTACTG-AAAATGG
131 ATAAAATATATTTTGGGTCAGATTTGTGGTCCCGAAACCACTGTTCGGATTTTACTGAAAAATGG
32090810 ACTGTTACACTCAAAACTTCTTGGCCCAATTTTAGGGTGGTACAATATTTTCGGTTGCCAAAATG
196 ACTGTTACACTCAAAACTTCTTGGCCCAATTTTAGGGTGGTACAATATTTTCGGTTGCCAAAATG
32090875 TGGATGCAGTTTATTTGCATGCGAATCTCTTTGGCCCTAAACGTGTCTAACATTAATGTTTTTCA
261 TGGATGCAGTTTATTTGCATGCGAATCTCTTTGGCCCTAAACGTGTCTAACATTAATGTTTTTCA
*
32090940 AGCTATTCTGCTTTATTGTATTTTGTAGCGTCAACAGGTGTATATCAACAAGTGGATCAACAAAG
326 AGCTATTCTGCTTTATTGTATTTTGTAGCGTCAACAGGTGTACATCAACAAGTGGATCAACAAAG
32091005 CAGTGTTTACCTACATTAGTGGCAAGAAGGTCAAGATATTCCTTGTGCACCTATTGACTGTCTTG
391 CAGTGTTTACCTACATTAGTGGCAAGAAGGTCAAGATATTCCTTGTGCACCTATTGACTGTCTTG
32091070 TACAAGAAAGCCAATGTCTCGATGTCCACAATGGAGTAATTTATTAAGCCGACGAAGAGCATTTT
456 TACAAGAAAGCCAATGTCTCGATGTCCACAATGGAGTAATTTATTAAGCCGACGAAGAGCATTTT
32091135 TGGGAACTCCATCTATACCCGTATGTCAAGCTCAATCACAAGCATATC
521 TGGGAACTCCATCTATACCCGTATGTCAAGCTCAATCACAAGCATATC
32091183 CTAGAATTTAACTTTTGCATTTTATGCAATTTAGTCCTTCTCGTAATTAAACACTTAATCGATAA
1 CTAGAATTTAACTTTTGCATTTTATGCAATTTAGTCCTTCTCGTAATTAAACACTTAATCGATAA
32091248 AATTTTCATATCAAAATTTTCACACGCCATTTCTAACATATTACAGGCCATATGATAAAATTAAA
66 AATTTTCATATCAAAATTTTCACACGCCATTTCTAACATATTACAGGCCATATGATAAAATTAAA
32091313 ATAAAATATATTTTGGGTCAGATTTGTGGTCCCGAAACCACTGTTCGGATTTTACTGAAAAATGG
131 ATAAAATATATTTTGGGTCAGATTTGTGGTCCCGAAACCACTGTTCGGATTTTACTGAAAAATGG
32091378 ACTGTTACACTCAAAACTTCTTGGCCCAATTTTAGGGTGGTACAATATTTTCGGTTGCCAAAATG
196 ACTGTTACACTCAAAACTTCTTGGCCCAATTTTAGGGTGGTACAATATTTTCGGTTGCCAAAATG
32091443 TGGATGCAGTTTATTTGCATGCGAATCTCTTTGGCCCTAAACGTGTCTAACATTAATGTTTTTCA
261 TGGATGCAGTTTATTTGCATGCGAATCTCTTTGGCCCTAAACGTGTCTAACATTAATGTTTTTCA
32091508 AGCTATTCTGCTTTATTGTATTTTGTAGCGTCAACAGGTGTACATCAACAAGTGGATCAACAAAG
326 AGCTATTCTGCTTTATTGTATTTTGTAGCGTCAACAGGTGTACATCAACAAGTGGATCAACAAAG
32091573 CAGTGTTTACCTACATTAGTGGCAAGAAGGTCAAGATATTCCTTGTGCACCTATTGACTGTCTTG
391 CAGTGTTTACCTACATTAGTGGCAAGAAGGTCAAGATATTCCTTGTGCACCTATTGACTGTCTTG
32091638 TACAAGAAAGCCAATGTCTCGATGTCCACAATGGAGTAATTTATTAAGCCGACGAAGAGCATTTT
456 TACAAGAAAGCCAATGTCTCGATGTCCACAATGGAGTAATTTATTAAGCCGACGAAGAGCATTTT
32091703 TGGGAACTCCATCTATACCCGTATGTCAAGCTCAATCACAAGCATATC
521 TGGGAACTCCATCTATACCCGTATGTCAAGCTCAATCACAAGCATATC
32091751 CTAGAATTTAACTTTTGCATTTTATGCAATTTAGTCCTTCTCGTAATTAAACACTTAATCGATAA
1 CTAGAATTTAACTTTTGCATTTTATGCAATTTAGTCCTTCTCGTAATTAAACACTTAATCGATAA
32091816 AATTTTCATATCAAAATTTTCACACGCCATTTCTAACATATTACAGGCCATATGATAAAATTAAA
66 AATTTTCATATCAAAATTTTCACACGCCATTTCTAACATATTACAGGCCATATGATAAAATTAAA
32091881 ATAAAATATATTTTGGGTCAGATTTGTGGTCCCGAAACCACTGTTCGGATTTTACTGAAAAATGG
131 ATAAAATATATTTTGGGTCAGATTTGTGGTCCCGAAACCACTGTTCGGATTTTACTGAAAAATGG
32091946 ACTGTTACACTCAAAACTTCTTGGCCCAATTTTAGGGTGGTACAATATTTTCGGTTGCCAAAATG
196 ACTGTTACACTCAAAACTTCTTGGCCCAATTTTAGGGTGGTACAATATTTTCGGTTGCCAAAATG
32092011 TGGATGCAGTTTATTTGCATGCGAATCTCTTTGGCCCTAAACGTGTCTAACATTAATGTTTTTCA
261 TGGATGCAGTTTATTTGCATGCGAATCTCTTTGGCCCTAAACGTGTCTAACATTAATGTTTTTCA
32092076 AGCTATTCTGCTTTATTGTATTTTGTAGCGTCAACAGGTGTACATCAACAAGTGGATCAACAAAG
326 AGCTATTCTGCTTTATTGTATTTTGTAGCGTCAACAGGTGTACATCAACAAGTGGATCAACAAAG
32092141 CAGTGTTTACCTACATTAGTGGCAAGAAGGTCAAGATATTCCTTGTGCACCTATTGACTGTCTTG
391 CAGTGTTTACCTACATTAGTGGCAAGAAGGTCAAGATATTCCTTGTGCACCTATTGACTGTCTTG
*
32092206 TACAAGAAAGCCAATGTCTCGATGTCCAAAATGGAGTAATTTATTAAGCCGACGAAGAGCATTTT
456 TACAAGAAAGCCAATGTCTCGATGTCCACAATGGAGTAATTTATTAAGCCGACGAAGAGCATTTT
32092271 TGGGAACTCCATCTATACCCGTATGTCAAGCTCAATCACAAGCATATC
521 TGGGAACTCCATCTATACCCGTATGTCAAGCTCAATCACAAGCATATC
32092319 C
1 C
32092320 ATGATTGGAC
Statistics
Matches: 1133, Mismatches: 3, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
567 186 0.16
568 947 0.84
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.34
Consensus pattern (568 bp):
CTAGAATTTAACTTTTGCATTTTATGCAATTTAGTCCTTCTCGTAATTAAACACTTAATCGATAA
AATTTTCATATCAAAATTTTCACACGCCATTTCTAACATATTACAGGCCATATGATAAAATTAAA
ATAAAATATATTTTGGGTCAGATTTGTGGTCCCGAAACCACTGTTCGGATTTTACTGAAAAATGG
ACTGTTACACTCAAAACTTCTTGGCCCAATTTTAGGGTGGTACAATATTTTCGGTTGCCAAAATG
TGGATGCAGTTTATTTGCATGCGAATCTCTTTGGCCCTAAACGTGTCTAACATTAATGTTTTTCA
AGCTATTCTGCTTTATTGTATTTTGTAGCGTCAACAGGTGTACATCAACAAGTGGATCAACAAAG
CAGTGTTTACCTACATTAGTGGCAAGAAGGTCAAGATATTCCTTGTGCACCTATTGACTGTCTTG
TACAAGAAAGCCAATGTCTCGATGTCCACAATGGAGTAATTTATTAAGCCGACGAAGAGCATTTT
TGGGAACTCCATCTATACCCGTATGTCAAGCTCAATCACAAGCATATC
Found at i:32100158 original size:11 final size:11
Alignment explanation
Indices: 32100142--32100167 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32100132 TCTAGTAGCT
32100142 ATAGGTATCAA
1 ATAGGTATCAA
32100153 ATAGGTATCAA
1 ATAGGTATCAA
32100164 ATAG
1 ATAG
32100168 CTATGGAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.27
Consensus pattern (11 bp):
ATAGGTATCAA
Found at i:32102174 original size:20 final size:20
Alignment explanation
Indices: 32102151--32102189 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
32102141 TAAACATGGT
32102151 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
32102171 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
32102190 TGTATTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:32102298 original size:24 final size:24
Alignment explanation
Indices: 32102239--32102359 Score: 165
Period size: 24 Copynumber: 5.0 Consensus size: 24
32102229 GGAGGAAGTG
32102239 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
32102263 GATAAAGGGCTTATGCCCCAGTTAT
1 TA-AAAGGGCTTATGCCCCAGTTAT
* *
32102288 TAAAAGGGCTTGTACCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
32102312 TAAAAGGGCTT-TGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
32102335 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 TAAAAG-GGCTTATGCC-CCAGTTAT
32102360 ATGATAAAGC
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
23 18 0.21
24 38 0.44
25 31 0.36
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:32102311 original size:49 final size:47
Alignment explanation
Indices: 32102239--32102345 Score: 160
Period size: 49 Copynumber: 2.2 Consensus size: 47
32102229 GGAGGAAGTG
*
32102239 TAAAAGGGCTTATGCCCCAGTTATGATAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATACCCCAGTTATGA-AAAGGGCTT-TGCCCCAGTTAT
* *
32102288 TAAAAGGGCTTGTACCCCAGTTATTAAAAGGGCTTTGCCCCAGTTAT
1 TAAAAGGGCTTATACCCCAGTTATGAAAAGGGCTTTGCCCCAGTTAT
32102335 TAAAAGAGGCT
1 TAAAAG-GGCT
32102346 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
47 18 0.33
48 13 0.24
49 23 0.43
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (47 bp):
TAAAAGGGCTTATACCCCAGTTATGAAAAGGGCTTTGCCCCAGTTAT
Found at i:32102588 original size:31 final size:31
Alignment explanation
Indices: 32102553--32102615 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
32102543 CATTTACAGT
*
32102553 AAAGGCTTTGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
** *
32102584 AAAGGCTTCGGCCCAGTGTTATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATGAAATATGA
32102615 A
1 A
32102616 GTGTGAAAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGA
Found at i:32103895 original size:26 final size:26
Alignment explanation
Indices: 32103866--32104036 Score: 69
Period size: 26 Copynumber: 6.9 Consensus size: 26
32103856 ATGAACATCT
**
32103866 CGATATATGGCTCTTTATGAGCTTCC
1 CGATATATGGCTCACTATGAGCTTCC
* * * *
32103892 CGAT-TAAAGGCTCATTGTGAGCTTCT
1 CGATAT-ATGGCTCACTATGAGCTTCC
* * *
32103918 TGAT-TAATGGCTCTCAAT-AGCTTCC
1 CGATAT-ATGGCTCACTATGAGCTTCC
*
32103943 CG--ATATGGCTCACT-TGAACTTCC
1 CGATATATGGCTCACTATGAGCTTCC
* ** *
32103966 CGATACATGGCT-A-TCCGAAGCTACC
1 CGATATATGGCTCACTATG-AGCTTCC
* *
32103991 CGTTAT-TGGCTCGC-ATGAGCTTCC
1 CGATATATGGCTCACTATGAGCTTCC
* *
32104015 TGAT-TATGGCTC-TTATGAGCTT
1 CGATATATGGCTCACTATGAGCTT
32104037 TTCGTTATAT
Statistics
Matches: 106, Mismatches: 28, Indels: 24
0.67 0.18 0.15
Matches are distributed among these distances:
22 1 0.01
23 18 0.17
24 30 0.28
25 25 0.24
26 32 0.30
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.34
Consensus pattern (26 bp):
CGATATATGGCTCACTATGAGCTTCC
Found at i:32104562 original size:26 final size:26
Alignment explanation
Indices: 32104525--32104581 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
32104515 GGAAGCTCTT
32104525 AAGAGCCATTAATCAGGAAGCTCACA
1 AAGAGCCATTAATCAGGAAGCTCACA
* *
32104551 AAGAGCCTTTAATCAGGAAGCTCACG
1 AAGAGCCATTAATCAGGAAGCTCACA
32104577 AAGAG
1 AAGAG
32104582 TCATATATCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (26 bp):
AAGAGCCATTAATCAGGAAGCTCACA
Found at i:32107710 original size:16 final size:15
Alignment explanation
Indices: 32107659--32107711 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
32107649 GTTATATACT
*
32107659 CATGAATTAAGTATGG
1 CATGAATTGAGTAT-G
* *
32107675 CATGAAATGACGTATT
1 CATGAATTGA-GTATG
32107691 CATGAATTGAGTACTG
1 CATGAATTGAGTA-TG
32107707 CATGA
1 CATGA
32107712 CTGATGCCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 3 0.10
16 23 0.77
17 4 0.13
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (15 bp):
CATGAATTGAGTATG
Found at i:32122183 original size:82 final size:81
Alignment explanation
Indices: 32122067--32122222 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
32122057 AAATTGTACA
* * * *
32122067 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
32122131 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32122148 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
32122213 TGCGAGTTGA
65 TGCGAATTGA
32122223 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32122190 original size:55 final size:52
Alignment explanation
Indices: 32122066--32122219 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
32122056 TAAATTGTAC
* *
32122066 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
32122119 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
32122174 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
32122220 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:32122224 original size:27 final size:27
Alignment explanation
Indices: 32122067--32122222 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
32122057 AAATTGTACA
*
32122067 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
32122094 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
32122121 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
32122148 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
32122176 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
32122203 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
32122223 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:32122233 original size:27 final size:27
Alignment explanation
Indices: 32122059--32122243 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
32122049 GCGGGATTAA
*
32122059 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
32122086 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
32122113 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
32122140 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
32122168 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
32122195 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
32122222 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
32122244 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:32122234 original size:82 final size:81
Alignment explanation
Indices: 32122059--32122243 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
32122049 GCGGGATTAA
* * * *
32122059 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
32122124 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
32122140 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
32122204 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
32122222 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
32122244 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:32130081 original size:82 final size:81
Alignment explanation
Indices: 32129965--32130120 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
32129955 AAATTGTACA
* * * *
32129965 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
32130029 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
32130046 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
32130111 TGCGAGTTGA
65 TGCGAATTGA
32130121 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:32130088 original size:55 final size:52
Alignment explanation
Indices: 32129964--32130117 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
32129954 TAAATTGTAC
* *
32129964 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
32130017 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
32130072 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
32130118 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:32130122 original size:27 final size:27
Alignment explanation
Indices: 32129965--32130120 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
32129955 AAATTGTACA
*
32129965 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
32129992 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
32130019 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
32130046 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
32130074 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
32130101 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
32130121 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:32130131 original size:27 final size:27
Alignment explanation
Indices: 32129957--32130141 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
32129947 GCGGGATTAA
*
32129957 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
32129984 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
32130011 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
32130038 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
32130066 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
32130093 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
32130120 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
32130142 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:32130132 original size:82 final size:81
Alignment explanation
Indices: 32129957--32130141 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
32129947 GCGGGATTAA
* * * *
32129957 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
32130022 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
32130038 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
32130102 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
32130120 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
32130142 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:32138886 original size:49 final size:50
Alignment explanation
Indices: 32138808--32138907 Score: 193
Period size: 49 Copynumber: 2.0 Consensus size: 50
32138798 TGTAGGTTAT
32138808 TCTTTTTAAGGCCTTTTATTCATAATAATTACTTCTTCAATTAATAAAAG
1 TCTTTTTAAGGCCTTTTATTCATAATAATTACTTCTTCAATTAATAAAAG
32138858 TCTTTTTAAGGCC-TTTATTCATAATAATTACTTCTTCAATTAATAAAAG
1 TCTTTTTAAGGCCTTTTATTCATAATAATTACTTCTTCAATTAATAAAAG
32138907 T
1 T
32138908 ATCAGTTTGA
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 37 0.74
50 13 0.26
ACGTcount: A:0.34, C:0.14, G:0.06, T:0.46
Consensus pattern (50 bp):
TCTTTTTAAGGCCTTTTATTCATAATAATTACTTCTTCAATTAATAAAAG
Found at i:32142171 original size:20 final size:19
Alignment explanation
Indices: 32142137--32142176 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
32142127 AGTGATAAGT
*
32142137 TGATGGATAAAATTTAAAA
1 TGATGAATAAAATTTAAAA
*
32142156 TGATGAATAGAAATTTGAAA
1 TGATGAATA-AAATTTAAAA
32142176 T
1 T
32142177 AAAAATGAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (19 bp):
TGATGAATAAAATTTAAAA
Found at i:32147114 original size:49 final size:49
Alignment explanation
Indices: 32146958--32147129 Score: 152
Period size: 49 Copynumber: 3.5 Consensus size: 49
32146948 AGAAGCCGAC
* ** * * **
32146958 GCCAAGTCCCAGACATGGTCTTACACTGACTAGC--ACATCAAATTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGACTCTCATATATCGAGGTCGAT
* * *
32147006 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCGAGGCCGTT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGTCGAT
* * * * *
32147055 CCCGTGTCCCAGATAGGTCTTACACTGGCTCTCATCTATC-AGTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAG-GTCGAT
* *
32147104 GCCATATCCCAGACAGGTCATACACT
1 GCCATGTCCCAGACAGGTCTTACACT
32147130 AACACACAAC
Statistics
Matches: 99, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
47 16 0.16
48 16 0.16
49 67 0.68
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCGAGGTCGAT
Found at i:32147955 original size:20 final size:20
Alignment explanation
Indices: 32147930--32147968 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
32147920 ATAATTTCAA
32147930 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
32147950 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
32147969 AATAGCCCCT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:32153088 original size:22 final size:25
Alignment explanation
Indices: 32153062--32153118 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 25
32153052 ATAGATACGA
32153062 ATTTTAT-TTTCAGTAATT-TT-TT
1 ATTTTATATTTCAGTAATTATTATT
*
32153084 ATTTT-TATTTCAGTTATTATTATT
1 ATTTTATATTTCAGTAATTATTATT
*
32153108 ATTTTAAATTT
1 ATTTTATATTT
32153119 TCTTCGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 1 0.03
22 15 0.52
23 2 0.07
24 7 0.24
25 4 0.14
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.67
Consensus pattern (25 bp):
ATTTTATATTTCAGTAATTATTATT
Found at i:32155581 original size:43 final size:41
Alignment explanation
Indices: 32155528--32155645 Score: 107
Period size: 43 Copynumber: 2.8 Consensus size: 41
32155518 TAATGTGTCG
*
32155528 TACCAATGCCATGTCCCAGACATGGTCTTACATGGAAAT-CTCA
1 TACCGATGCCATGTCCCAGACATGGTCTTACA---AAATCCTCA
* *
32155571 TATCGATGCCAATAG-CCCAG-CTATGGTCTTACACAATGCCTCA
1 TACCGATGCC-AT-GTCCCAGAC-ATGGTCTTACAAAAT-CCTCA
* *
32155614 TGCCGATGCCATGTCCCAGACATGGTGTTACA
1 TACCGATGCCATGTCCCAGACATGGTCTTACA
32155646 CTGGCTCACA
Statistics
Matches: 62, Mismatches: 6, Indels: 15
0.75 0.07 0.18
Matches are distributed among these distances:
41 4 0.06
42 17 0.27
43 22 0.35
44 18 0.29
45 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (41 bp):
TACCGATGCCATGTCCCAGACATGGTCTTACAAAATCCTCA
Found at i:32155735 original size:50 final size:50
Alignment explanation
Indices: 32155614--32155837 Score: 219
Period size: 50 Copynumber: 4.6 Consensus size: 50
32155604 CAATGCCTCA
* * * *
32155614 TGCCGATGCCATGTCCCAGACATGGTGTTACACTGGCTCACATA-A-TGA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATACCGG
* * * * * *
32155662 TGCCAATGTCATGTTCCAGACATGGTTTTACACTAGCTCGCATGTACCGG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATACCGG
* * * *
32155712 TGCCGATGCCATGTCCCAAACATGGTCTTACACT-G-ACAAATAT-CAAGG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATAC-CGG
* * * *
32155760 T--CGATGCCATGTCCTAGACATGGTCTTACATTAGCTCTCGTATACCGG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATACCGG
*
32155808 TGCCGATGCCATGTCCCAAACATGGTCTTA
1 TGCCGATGCCATGTCCCAGACATGGTCTTA
32155838 AATTGACACA
Statistics
Matches: 139, Mismatches: 29, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
46 28 0.20
47 2 0.01
48 51 0.37
49 3 0.02
50 55 0.40
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATACCGG
Found at i:32155809 original size:96 final size:96
Alignment explanation
Indices: 32155614--32155899 Score: 301
Period size: 96 Copynumber: 2.9 Consensus size: 96
32155604 CAATGCCTCA
* * * * * ** *
32155614 TGCCGATGCCATGTCCCAGACATGGTGTTACACTGGCTCACATA-ATGATGCCAATGTCATGTTC
1 TGCCGATGCCATGTCCCAAACATGGTCTTAAACT-G-ACAAATATA-GATGCTGATGCCATG-TC
* * *
32155678 C-AGACATGGTTTTACACTAGCTCGCATGTACCGG
62 CTAGACATGGTCTTACACTAGCTCTCATATACCGG
* *
32155712 TGCCGATGCCATGTCCCAAACATGGTCTTACACTGACAAATATCA-A-GGTCGATGCCATGTCCT
1 TGCCGATGCCATGTCCCAAACATGGTCTTAAACTGACAAATAT-AGATGCT-GATGCCATGTCCT
* *
32155775 AGACATGGTCTTACATTAGCTCTCGTATACCGG
64 AGACATGGTCTTACACTAGCTCTCATATACCGG
* * * *
32155808 TGCCGATGCCATGTCCCAAACATGGTCTTAAATTGACACATATAGATGCTGATGCTATGTCCTTC
1 TGCCGATGCCATGTCCCAAACATGGTCTTAAACTGACAAATATAGATGCTGATGCCATGTCC-TA
*
32155873 GACATGGTCTTACACTGGCTCTCATAT
65 GACATGGTCTTACACTAGCTCTCATAT
32155900 CGCCATGGTC
Statistics
Matches: 159, Mismatches: 22, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
95 5 0.03
96 93 0.58
97 28 0.18
98 33 0.21
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTAAACTGACAAATATAGATGCTGATGCCATGTCCTAG
ACATGGTCTTACACTAGCTCTCATATACCGG
Found at i:32160752 original size:24 final size:24
Alignment explanation
Indices: 32160708--32160761 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
32160698 ACTATGTCTC
* *
32160708 TGATGCTTTAGATGCATTAGATAT
1 TGATGATTTAGAGGCATTAGATAT
32160732 TGATGATTTCAGAGGCA-TAGATAT
1 TGATGATTT-AGAGGCATTAGATAT
*
32160756 AGATGA
1 TGATGA
32160762 GATTGTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 20 0.77
25 6 0.23
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.35
Consensus pattern (24 bp):
TGATGATTTAGAGGCATTAGATAT
Found at i:32162608 original size:16 final size:17
Alignment explanation
Indices: 32162578--32162612 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
32162568 GTGGGGGTTC
*
32162578 TTTTTCTTCTTTTTTTA
1 TTTTTCTTCTATTTTTA
32162595 TTTTTCTT-TATTTTTA
1 TTTTTCTTCTATTTTTA
32162611 TT
1 TT
32162613 CTGGTAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTCTTCTATTTTTA
Found at i:32166655 original size:29 final size:29
Alignment explanation
Indices: 32166617--32166672 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
32166607 TTTGATTTAC
* *
32166617 TTATACATTTTAATTTATTATGTATACCT
1 TTATAAATTTTAAATTATTATGTATACCT
32166646 TTATAAATTTTAAATTATTATGTATAC
1 TTATAAATTTTAAATTATTATGTATAC
32166673 TTATACATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (29 bp):
TTATAAATTTTAAATTATTATGTATACCT
Found at i:32166778 original size:40 final size:40
Alignment explanation
Indices: 32166734--32166809 Score: 91
Period size: 40 Copynumber: 1.9 Consensus size: 40
32166724 ATTTGAAAGT
*
32166734 TAATGA-ACAATTTAGACCTTAACGGTTATATCTTTTAACA
1 TAATGACA-AATTTAGACCTTAACAGTTATATCTTTTAACA
* * * *
32166774 TAATGTCAAATTTAGCCCTTAATATTTATATCTTTT
1 TAATGACAAATTTAGACCTTAACAGTTATATCTTTT
32166810 GTCAATTTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
40 29 0.97
41 1 0.03
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.43
Consensus pattern (40 bp):
TAATGACAAATTTAGACCTTAACAGTTATATCTTTTAACA
Found at i:32167624 original size:11 final size:11
Alignment explanation
Indices: 32167600--32167634 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
32167590 TTAAAGGACC
32167600 TTTT-TAATTGG
1 TTTTGTAATT-G
32167611 TTTTGTAATTG
1 TTTTGTAATTG
32167622 TTTTGTAATTG
1 TTTTGTAATTG
32167633 TT
1 TT
32167635 CAGGACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 18 0.78
12 5 0.22
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (11 bp):
TTTTGTAATTG
Found at i:32175354 original size:30 final size:30
Alignment explanation
Indices: 32175310--32175389 Score: 92
Period size: 30 Copynumber: 2.7 Consensus size: 30
32175300 CATATAACAT
* *
32175310 AATCAAATTCAGAACATGTCTCGATA-TCAG
1 AATCAAAATCAGAACATATCTC-ATAGTCAG
* *
32175340 AA-CTAGAATCAGAACATATGTCATAGTCAG
1 AATC-AAAATCAGAACATATCTCATAGTCAG
32175370 AATCAAAATCAGAACATATC
1 AATCAAAATCAGAACATATC
32175390 AAATGCAGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
29 4 0.10
30 36 0.88
31 1 0.02
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (30 bp):
AATCAAAATCAGAACATATCTCATAGTCAG
Found at i:32177409 original size:32 final size:33
Alignment explanation
Indices: 32177373--32177444 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
32177363 AACTTTTATG
*
32177373 AAATATTTT-CAGAAAATCTAT-CAAACAACAGA
1 AAATATTTTACACAAAATC-ATCCAAACAACAGA
* * *
32177405 AAATATTTTACACAGATTCATCCAAACACCAGA
1 AAATATTTTACACAAAATCATCCAAACAACAGA
32177438 AAATATT
1 AAATATT
32177445 AGCTATTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
32 11 0.32
33 23 0.68
ACGTcount: A:0.50, C:0.18, G:0.06, T:0.26
Consensus pattern (33 bp):
AAATATTTTACACAAAATCATCCAAACAACAGA
Found at i:32181733 original size:45 final size:45
Alignment explanation
Indices: 32181669--32181759 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
32181659 GAACTATGCG
*
32181669 ATCTGAACTCATTGAGTTGTAGTCTGAGTTCATGATATATGTGAC
1 ATCTGAACTCATTGAGTTGTAGCCTGAGTTCATGATATATGTGAC
* * *
32181714 ATCTGAACTCATTGAGTTGTGGCCTGAGTTCATGATGTATTTGAC
1 ATCTGAACTCATTGAGTTGTAGCCTGAGTTCATGATATATGTGAC
32181759 A
1 A
32181760 CATTTTTGGC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.37
Consensus pattern (45 bp):
ATCTGAACTCATTGAGTTGTAGCCTGAGTTCATGATATATGTGAC
Found at i:32185112 original size:30 final size:30
Alignment explanation
Indices: 32185027--32185155 Score: 80
Period size: 29 Copynumber: 4.4 Consensus size: 30
32185017 TGTGTATACA
32185027 ATATATATACT-AGGGG-G-TGTTATATATA-
1 ATATATATA-TGAGGGGAGTTG-TATATATAT
32185055 ATATATA-ATTG-GGGGAGTTGGTA-ATATAT
1 ATATATATA-TGAGGGGAGTT-GTATATATAT
32185084 ATATATATATGAGTGGG-GTTGTATATATAT
1 ATATATATATGAG-GGGAGTTGTATATATAT
* * * *
32185114 ACTTATATATACGTGGGTGA-TTATACATATAT
1 A--TATATATATGAGGG-GAGTTGTATATATAT
32185146 A-ATATATATG
1 ATATATATATG
32185156 CATGGATTTA
Statistics
Matches: 82, Mismatches: 6, Indels: 25
0.73 0.05 0.22
Matches are distributed among these distances:
27 6 0.07
28 13 0.16
29 23 0.28
30 13 0.16
31 5 0.06
32 22 0.27
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.40
Consensus pattern (30 bp):
ATATATATATGAGGGGAGTTGTATATATAT
Found at i:32185202 original size:30 final size:28
Alignment explanation
Indices: 32185141--32185214 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 28
32185131 TGATTATACA
* *
32185141 TATATAATATATATGCATGGATTTATTT
1 TATATAATATATATGAATGGATTTATGT
* *
32185169 TATATAATATATGTTAATGGATTTTGATGT
1 TATATAATATATATGAATGGA-TTT-ATGT
32185199 TATATATATAATATAT
1 TATATA-AT-ATATAT
32185215 ACATGCATGG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 18 0.49
29 3 0.08
30 9 0.24
31 2 0.05
32 5 0.14
ACGTcount: A:0.38, C:0.01, G:0.11, T:0.50
Consensus pattern (28 bp):
TATATAATATATATGAATGGATTTATGT
Found at i:32190651 original size:15 final size:15
Alignment explanation
Indices: 32190631--32190659 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
32190621 AGAATTCTAT
32190631 ATCTAAAGTAGAATA
1 ATCTAAAGTAGAATA
32190646 ATCTAAAGTAGAAT
1 ATCTAAAGTAGAAT
32190660 TCACCTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.28
Consensus pattern (15 bp):
ATCTAAAGTAGAATA
Found at i:32192034 original size:15 final size:16
Alignment explanation
Indices: 32192014--32192046 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32192004 CAAACAAAAC
32192014 AAAAAA-TGAAAAGAA
1 AAAAAACTGAAAAGAA
*
32192029 AAAAAACTTAAAAGAA
1 AAAAAACTGAAAAGAA
32192045 AA
1 AA
32192047 TGTACTTGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.79, C:0.03, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAAAACTGAAAAGAA
Found at i:32197375 original size:27 final size:27
Alignment explanation
Indices: 32197323--32197537 Score: 198
Period size: 27 Copynumber: 8.0 Consensus size: 27
32197313 AAACATATAT
* * *
32197323 CACATAGGGGTAAAACAGTCAATTTAC
1 CACATAAGGGAAAAACAGTCATTTTAC
* * ** *
32197350 TATATAAGGGCGAAACAATCATTTTAC
1 CACATAAGGGAAAAACAGTCATTTTAC
32197377 CACATAAGGGAAAAACAGTCATTTTAC
1 CACATAAGGGAAAAACAGTCATTTTAC
* *
32197404 CACATAA-TGACAAAATAGTCATTTTAC
1 CACATAAGGGA-AAAACAGTCATTTTAC
* *
32197431 CACATAAGGGAAAAATAGTAATTTTAC
1 CACATAAGGGAAAAACAGTCATTTTAC
* * * *
32197458 CACATAAAGGCAATATAGTCATTTTAC
1 CACATAAGGGAAAAACAGTCATTTTAC
* ** *
32197485 CATATAAGGCCAAAATAGTCATTTTAC
1 CACATAAGGGAAAAACAGTCATTTTAC
* * **
32197512 CATATAAGGGCAAAATTGTCATTTTA
1 CACATAAGGGAAAAACAGTCATTTTA
32197538 TCAATTAAGG
Statistics
Matches: 160, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 2 0.01
27 156 0.98
28 2 0.01
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.28
Consensus pattern (27 bp):
CACATAAGGGAAAAACAGTCATTTTAC
Found at i:32197458 original size:81 final size:81
Alignment explanation
Indices: 32197370--32197537 Score: 237
Period size: 81 Copynumber: 2.1 Consensus size: 81
32197360 CGAAACAATC
* *
32197370 ATTTTACCACATAAGGGAAAAACAGTCATTTTACCACATAATGACAAAATAGTCATTTTACCACA
1 ATTTTACCACATAAAGGAAAAACAGTCATTTTACCACATAAGGACAAAATAGTCATTTTACCACA
32197435 TAAGGGAAAAATAGTA
66 TAAGGGAAAAATAGTA
* * * * * *
32197451 ATTTTACCACATAAAGGCAATATAGTCATTTTACCATATAAGGCCAAAATAGTCATTTTACCATA
1 ATTTTACCACATAAAGGAAAAACAGTCATTTTACCACATAAGGACAAAATAGTCATTTTACCACA
* * *
32197516 TAAGGGCAAAATTGTC
66 TAAGGGAAAAATAGTA
32197532 ATTTTA
1 ATTTTA
32197538 TCAATTAAGG
Statistics
Matches: 76, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 76 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (81 bp):
ATTTTACCACATAAAGGAAAAACAGTCATTTTACCACATAAGGACAAAATAGTCATTTTACCACA
TAAGGGAAAAATAGTA
Found at i:32197547 original size:54 final size:54
Alignment explanation
Indices: 32197323--32197537 Score: 250
Period size: 54 Copynumber: 4.0 Consensus size: 54
32197313 AAACATATAT
* * * * * * * *
32197323 CACATAGGGGTAAAACAGTCAATTTACTATATAAGGGCGAAACAATCATTTTAC
1 CACATAAGGGAAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
* *
32197377 CACATAAGGGAAAAACAGTCATTTTACCACATAATGACAAAATAGTCATTTTAC
1 CACATAAGGGAAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
* * * *
32197431 CACATAAGGGAAAAATAGTAATTTTACCACATAAAGGCAATATAGTCATTTTAC
1 CACATAAGGGAAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
* ** * * *
32197485 CATATAAGGCCAAAATAGTCATTTTACCATATAAGGGCAAAATTGTCATTTTA
1 CACATAAGGGAAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTA
32197538 TCAATTAAGG
Statistics
Matches: 138, Mismatches: 23, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 138 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.28
Consensus pattern (54 bp):
CACATAAGGGAAAAACAGTCATTTTACCACATAAGGGCAAAATAGTCATTTTAC
Found at i:32217959 original size:38 final size:38
Alignment explanation
Indices: 32217908--32217986 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
32217898 AACAAAAGTA
32217908 AGGCTTTATTCAAGAAAATTTAAAACTTTGCCAAAGGT
1 AGGCTTTATTCAAGAAAATTTAAAACTTTGCCAAAGGT
32217946 AGGCTTTATTCAAGAAAATTTAAAACTTTGCCAAAGGT
1 AGGCTTTATTCAAGAAAATTTAAAACTTTGCCAAAGGT
32217984 AGG
1 AGG
32217987 ACTTGAACTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (38 bp):
AGGCTTTATTCAAGAAAATTTAAAACTTTGCCAAAGGT
Found at i:32218295 original size:11 final size:11
Alignment explanation
Indices: 32218279--32218311 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
32218269 TGAATGACAA
32218279 GAAATGTTTGT
1 GAAATGTTTGT
32218290 GAAATGTTTGT
1 GAAATGTTTGT
*
32218301 GAAATGCTTGT
1 GAAATGTTTGT
32218312 TTAATGAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.27, C:0.03, G:0.27, T:0.42
Consensus pattern (11 bp):
GAAATGTTTGT
Found at i:32233403 original size:57 final size:57
Alignment explanation
Indices: 32233293--32233488 Score: 153
Period size: 57 Copynumber: 3.4 Consensus size: 57
32233283 GGTGTTACAA
* * * *
32233293 CAGGATTACAAGTCCAGGCTAAATCCTGTCTACAATATATACTCAATAGAGCTTAGT
1 CAGGATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAAAGCTTAAT
* * * ** *
32233350 CAGGATTACCAGTCGAGGCTAAATCCTTTTTATGACATATGCTCTAA-AAAGCTTAAT
1 CAGGATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTC-AATAAAGCTTAAT
* * * ** * * * * * *
32233407 CTGGATTACCCGTCCAGGCTACATCCAATCCATAACATATGCTCGA-GAGGACTTATAT
1 CAGGATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAAAG-CTTA-AT
*
32233465 CAGGATTACCCGTCCAGGCTAAAT
1 CAGGATTACCAGTCCAGGCTAAAT
32233489 TCTTTCTATA
Statistics
Matches: 112, Mismatches: 24, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
56 3 0.03
57 83 0.74
58 26 0.23
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (57 bp):
CAGGATTACCAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAAAGCTTAAT
Found at i:32236387 original size:30 final size:30
Alignment explanation
Indices: 32236351--32236410 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
32236341 CATTTAATAC
*
32236351 GAACTTTGGAAAAATTACATTTTTGCCCCT
1 GAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
32236381 GAACTTTTGCATAATTACACTTTTGCCCCT
1 GAACTTTGGAAAAATTACACTTTTGCCCCT
32236411 AGGCTCGGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (30 bp):
GAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:32238259 original size:12 final size:12
Alignment explanation
Indices: 32238238--32238267 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32238228 ATTAATTGAG
*
32238238 TTAATTAATGCA
1 TTAATCAATGCA
32238250 TTAATCAATGCA
1 TTAATCAATGCA
32238262 TTAATC
1 TTAATC
32238268 TTGGTAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (12 bp):
TTAATCAATGCA
Found at i:32246958 original size:46 final size:47
Alignment explanation
Indices: 32246854--32246967 Score: 124
Period size: 48 Copynumber: 2.4 Consensus size: 47
32246844 TGTCTTCGAC
** * * * *
32246854 ATGGACTTACATGAATTATTCTTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATAGATAAT
* *
32246902 ATGTG-CTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATAGCTGAT
1 ATG-GACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATAGATAAT
32246948 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
32246968 TATGTCCTGT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
45 1 0.02
46 26 0.46
48 28 0.50
49 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATAGATAAT
Found at i:32251298 original size:46 final size:49
Alignment explanation
Indices: 32251184--32251304 Score: 149
Period size: 49 Copynumber: 2.5 Consensus size: 49
32251174 TGTCTTCGAC
** * * *
32251184 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATATAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAGAT
* *
32251233 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CT-GAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAGAT
*
32251279 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
32251305 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 26 0.41
47 1 0.02
48 1 0.02
49 35 0.56
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAGAT
Found at i:32252844 original size:83 final size:83
Alignment explanation
Indices: 32252700--32252861 Score: 254
Period size: 83 Copynumber: 2.0 Consensus size: 83
32252690 AAAGCCATCT
* *
32252700 GGTATGCATAGTAGTCTGCACTTAGTACTACACATGCAACCAATTATCCAGTACACGTAGTAGCC
1 GGTACGCATAGTAGTCTACACTTAGTACTACACATGCAACCAATTATCCAGTACACGTAGTAGCC
*
32252765 TTCACTTAGTACTATTCG
66 TGCACTTAGTACTATTCG
* * *
32252783 GGTACGCATAGTA-TCCTACACTTAGTACTACACATGCGACCAATTATCCGGTGCACGTAGTAGC
1 GGTACGCATAGTAGT-CTACACTTAGTACTACACATGCAACCAATTATCCAGTACACGTAGTAGC
32252847 CTGCACTTAGTACTA
65 CTGCACTTAGTACTA
32252862 CACACGTGAC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
82 1 0.01
83 71 0.99
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (83 bp):
GGTACGCATAGTAGTCTACACTTAGTACTACACATGCAACCAATTATCCAGTACACGTAGTAGCC
TGCACTTAGTACTATTCG
Found at i:32257733 original size:12 final size:12
Alignment explanation
Indices: 32257716--32257740 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32257706 AACACCTGGT
32257716 AACACCATTAAA
1 AACACCATTAAA
32257728 AACACCATTAAA
1 AACACCATTAAA
32257740 A
1 A
32257741 TGCATTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.24, G:0.00, T:0.16
Consensus pattern (12 bp):
AACACCATTAAA
Found at i:32278537 original size:20 final size:21
Alignment explanation
Indices: 32278499--32278538 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32278489 TATAAACACA
*
32278499 TTCACATTCCAACATATAAAG
1 TTCACATTACAACATATAAAG
32278520 TTCACATTACAA-ATATAAA
1 TTCACATTACAACATATAAA
32278539 TATGCATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (21 bp):
TTCACATTACAACATATAAAG
Done.