Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A06
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 115140250
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2234201 characters in sequence are not A, C, G, or T
File 98 of 345
Found at i:32278799 original size:44 final size:44
Alignment explanation
Indices: 32278736--32278826 Score: 182
Period size: 44 Copynumber: 2.1 Consensus size: 44
32278726 ATGCATAATT
32278736 TTAAGGCTCATTTCAATATAGTCTCAAGACTGAATACACTTACC
1 TTAAGGCTCATTTCAATATAGTCTCAAGACTGAATACACTTACC
32278780 TTAAGGCTCATTTCAATATAGTCTCAAGACTGAATACACTTACC
1 TTAAGGCTCATTTCAATATAGTCTCAAGACTGAATACACTTACC
32278824 TTA
1 TTA
32278827 TTTTAGGTAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 47 1.00
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.33
Consensus pattern (44 bp):
TTAAGGCTCATTTCAATATAGTCTCAAGACTGAATACACTTACC
Found at i:32286497 original size:19 final size:19
Alignment explanation
Indices: 32286473--32286534 Score: 106
Period size: 19 Copynumber: 3.2 Consensus size: 19
32286463 AATCTTTAAG
32286473 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32286492 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32286511 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
32286532 GAT
1 GAT
32286535 CTTGTAATCT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 32 0.78
21 9 0.22
ACGTcount: A:0.37, C:0.10, G:0.18, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:32293664 original size:42 final size:42
Alignment explanation
Indices: 32293605--32293768 Score: 179
Period size: 42 Copynumber: 3.9 Consensus size: 42
32293595 TTAGGGTTAT
*
32293605 TGAGATTAT-GTGTAAGACTATATCTGGGATATGGCATCTATA
1 TGAGATT-TCGTGTAAGACCATATCTGGGATATGGCATCTATA
* * *
32293647 TGAGATTTTGTGTAAGACCATATTTGGGATATAGCAT-TGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCT-ATA
* * * * *
32293689 TGAGACTTCGTGTAAGACCATAGCTAGGCTATTGGCATCGATA
1 TGAGATTTCGTGTAAGACCATATCTGGGATA-TGGCATCTATA
* * *
32293732 TGAGATTCCATGTAAGACCATATTTGGGATATGGCAT
1 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCAT
32293769 TGGTATGGTA
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
41 2 0.02
42 66 0.66
43 32 0.32
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (42 bp):
TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCTATA
Found at i:32293747 original size:85 final size:84
Alignment explanation
Indices: 32293614--32293775 Score: 225
Period size: 85 Copynumber: 1.9 Consensus size: 84
32293604 TTGAGATTAT
* * * * ***
32293614 GTGTAAGACTATATCTGGGATATGGCATCTATATGAGATTTTGTGTAAGACCATATTTGGGATAT
1 GTGTAAGACCATAGCTAGGATATGGCATCGATATGAGATTCCATGTAAGACCATATTTGGGATAT
32293679 AGCATTGATATGAGACTTC
66 AGCATTGATATGAGACTTC
*
32293698 GTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAGATTCCATGTAAGACCATATTTGGGATA
1 GTGTAAGACCATAGCTAGGATA-TGGCATCGATATGAGATTCCATGTAAGACCATATTTGGGATA
* *
32293763 TGGCATTGGTATG
65 TAGCATTGATATG
32293776 GTACTATGAG
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
84 18 0.27
85 49 0.73
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (84 bp):
GTGTAAGACCATAGCTAGGATATGGCATCGATATGAGATTCCATGTAAGACCATATTTGGGATAT
AGCATTGATATGAGACTTC
Found at i:32296913 original size:35 final size:35
Alignment explanation
Indices: 32296872--32296942 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
32296862 TTTATTTGAG
32296872 ATATGATGAAGGCCTAGGTTTTTACCATTGTTATA
1 ATATGATGAAGGCCTAGGTTTTTACCATTGTTATA
32296907 ATATGATGAAGGCCTAGGTTTTTACCATTGTTATA
1 ATATGATGAAGGCCTAGGTTTTTACCATTGTTATA
32296942 A
1 A
32296943 ATTTAACGTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (35 bp):
ATATGATGAAGGCCTAGGTTTTTACCATTGTTATA
Found at i:32297618 original size:48 final size:48
Alignment explanation
Indices: 32297542--32297761 Score: 185
Period size: 48 Copynumber: 4.8 Consensus size: 48
32297532 ATGTGTGATA
* * *
32297542 CCATATAAGACCATGTCTGGGACATGGCATTGGCATCGATATGAGATC
1 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATC
* * *
32297590 CCATGTAAGACCATATTTGGGATATGGCATTGGCATCGATATGAGGTT
1 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATC
* * * * *
32297638 TCTTGTAAGACCATGTTTGGG--A---CA-TGGCATTGATATGAGA-C
1 CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATC
* * * * *
32297679 ATCGTGTAAGACCATAGCTGGGCTAT--C---GGCATCGATATGTGTGATC
1 -CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATA--TGAGATC
32297725 CCATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 CCATGTAAGACCATATCTGGGATATGGCATTGGCATC
32297762 TTACTATGTG
Statistics
Matches: 138, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
42 31 0.22
43 11 0.08
44 1 0.01
45 26 0.19
46 2 0.01
47 1 0.01
48 60 0.43
50 6 0.04
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (48 bp):
CCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGAGATC
Found at i:32297871 original size:19 final size:20
Alignment explanation
Indices: 32297844--32297887 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
32297834 GTCAAAGATG
*
32297844 TGAATGGGTAT-GATCATGT-
1 TGAAAGGGTATAGAT-ATGTA
32297863 TGAAAGGGTATAGATATGTA
1 TGAAAGGGTATAGATATGTA
32297883 TGAAA
1 TGAAA
32297888 AAGTCATGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.36, C:0.02, G:0.30, T:0.32
Consensus pattern (20 bp):
TGAAAGGGTATAGATATGTA
Found at i:32306459 original size:39 final size:39
Alignment explanation
Indices: 32306416--32306548 Score: 221
Period size: 39 Copynumber: 3.4 Consensus size: 39
32306406 CATGTTTTTT
32306416 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
*
32306455 AGTATTGTGATATATGCTTGAATGTTATGTGATTATACG
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
* *
32306494 AGTATTGTGATATATGCTTAAATGTTATGTGCTTATATG
1 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
* *
32306533 TGTAATGTGATATATG
1 AGTATTGTGATATATG
32306549 TTTAAAAGTG
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 88 1.00
ACGTcount: A:0.29, C:0.04, G:0.23, T:0.45
Consensus pattern (39 bp):
AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
Found at i:32312736 original size:38 final size:38
Alignment explanation
Indices: 32312688--32313041 Score: 537
Period size: 38 Copynumber: 9.3 Consensus size: 38
32312678 GGCACGAAGG
* * * *
32312688 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
32312726 CCAGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
**
32312764 CCCGGATATTTTACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* ** * *
32312802 CCCGAATATTTTACCAGCACGAAGCGTGCGGGTCTTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGG-ATTTAA
32312841 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
32312880 CTCGGATATAATACTAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* *
32312918 CCCGGATATATTGCCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
32312956 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
32312994 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
32313032 CCTGGATATA
1 CCCGGATATA
32313042 CATCGAATAT
Statistics
Matches: 289, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
38 251 0.87
39 10 0.03
40 28 0.10
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:32312971 original size:154 final size:153
Alignment explanation
Indices: 32312687--32313041 Score: 561
Period size: 154 Copynumber: 2.3 Consensus size: 153
32312677 AGGCACGAAG
* * * *
32312687 GCCCGAATATAATACCAGCACTAGGCCTGCGGGATTTATCCAGGATATAATACCAGCACGAAGCC
1 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGGATATAATACCAGCACGAAGCC
* **
32312752 TGCGGGATTTAACCCGGATATTTTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATTTTACC
66 TGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAATACC
* *
32312817 AGCACGAAGCGTGCGGGTCTTTAA
131 AGCACGAAGCCTGCGGG-ATTTAA
*
32312841 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACTC-GGATATAATACTAGCACGAAGC
1 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAAC-CAGGATATAATACCAGCACGAAGC
* *
32312905 CTGCGGGATTTAACCCGGATATATTGCCAGCACGAAGCCTGCGGGATTTAACCCGGATATAATAC
65 CTGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAATAC
32312970 CAGCACGAAGCCTGCGGGATTTAA
130 CAGCACGAAGCCTGCGGGATTTAA
*
32312994 -CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCTGGATATA
1 GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGGATATA
32313042 CATCGAATAT
Statistics
Matches: 187, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
151 1 0.01
152 46 0.25
153 5 0.03
154 134 0.72
155 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.24, T:0.21
Consensus pattern (153 bp):
GCCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAACCAGGATATAATACCAGCACGAAGCC
TGCGGGATTTAACCCGGATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGAATATAATACC
AGCACGAAGCCTGCGGGATTTAA
Found at i:32318829 original size:28 final size:28
Alignment explanation
Indices: 32318796--32318869 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 28
32318786 ATTGCATGAC
*
32318796 TATGAATTG-GATTGGGCCTGACGGGCCA
1 TATGAA-TGAGATTGGGCCTGACGGACCA
* * * *
32318824 TATGAAAGTGATTGGGCC-GATGGATCA
1 TATGAATGAGATTGGGCCTGACGGACCA
32318851 TATGAATGAGATTGGGCCT
1 TATGAATGAGATTGGGCCT
32318870 AAAGGGGCCA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.26, C:0.14, G:0.34, T:0.27
Consensus pattern (28 bp):
TATGAATGAGATTGGGCCTGACGGACCA
Found at i:32323540 original size:27 final size:27
Alignment explanation
Indices: 32323473--32323545 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
32323463 ATTGTATGAC
*
32323473 TATGAATGTGATTGGGCTTGACGGGCCA
1 TATGAATGTGATTGGGC-CGACGGGCCA
* * *
32323501 TATGAAAGTGATTGGGCCGATGGGTCA
1 TATGAATGTGATTGGGCCGACGGGCCA
*
32323528 TATGAATGAGATTGGGCC
1 TATGAATGTGATTGGGCC
32323546 TAAAGGGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.25, C:0.12, G:0.36, T:0.27
Consensus pattern (27 bp):
TATGAATGTGATTGGGCCGACGGGCCA
Found at i:32328216 original size:27 final size:27
Alignment explanation
Indices: 32328149--32328221 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
32328139 ATTGTATGAC
*
32328149 TATGAATGTGATTGGGCTTGACGGGCCA
1 TATGAATGTGATTGGGC-CGACGGGCCA
* * *
32328177 TATGAAAGTGATTGGGCCGATGGGTCA
1 TATGAATGTGATTGGGCCGACGGGCCA
*
32328204 TATGAATGAGATTGGGCC
1 TATGAATGTGATTGGGCC
32328222 TAAAGGGGCC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 23 0.59
28 16 0.41
ACGTcount: A:0.25, C:0.12, G:0.36, T:0.27
Consensus pattern (27 bp):
TATGAATGTGATTGGGCCGACGGGCCA
Found at i:32333141 original size:47 final size:47
Alignment explanation
Indices: 32333066--32333197 Score: 151
Period size: 49 Copynumber: 2.8 Consensus size: 47
32333056 GGGGTAGAAT
* ** *
32333066 GCTGATGCTATGTCCCAGACATATTCTTACACTGGCTCATATCTCA-AG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATAT-TCATAG
* *
32333114 TC-GATGCCATGTCCCAGACATGGTCTTACACTGACTATCTTCATTGAG
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGACTATATTCA-T-AG
*
32333162 GCTGTTGCCATGTCCCAGACATGGTCTTACACTGAC
1 GCTGATGCCATGTCCCAGACATGGTCTTACACTGAC
32333198 ACATCTCGTA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
45 3 0.04
46 3 0.04
47 30 0.42
48 4 0.06
49 32 0.44
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
GCTGATGCCATGTCCCAGACATGGTCTTACACTGACTATATTCATAG
Found at i:32339524 original size:22 final size:21
Alignment explanation
Indices: 32339484--32339524 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
32339474 CACTAGACAC
*
32339484 AGGGGCACACGCCCGTGTGGA
1 AGGGGCACACGCCCATGTGGA
*
32339505 AGGGGCAACATGCCCATGTG
1 AGGGGC-ACACGCCCATGTG
32339525 ACCAATTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGA
Found at i:32340799 original size:99 final size:96
Alignment explanation
Indices: 32340627--32340803 Score: 250
Period size: 99 Copynumber: 1.8 Consensus size: 96
32340617 AGAACGCCGA
*
32340627 TGCCATGTCCCAGACATAGTCTTACACTGCCTCATAACTCAAGTCAATGCCATGTCCCAGACATG
1 TGCCATGTCCCAGACATAGTCTTACACTGCCTCATAACTCAAGTCAATGCCATGTCCCAAACATG
32340692 GTCTTACACTGACTATCTTTATTGAGGTTGT
66 GTCTTACACTGACTATCTTTATTGAGGTTGT
* * * *
32340723 TGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACTTA-TC-TGTACCGATGCCATGTCCCAA
1 TGCCATGTCCCAGACATAGTCTTACACT-GC-CTCA-TAACTCAAGT--CAATGCCATGTCCCAA
32340786 ACATGGTCTTACACTGAC
61 ACATGGTCTTACACTGAC
32340804 ACATCTTATA
Statistics
Matches: 71, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
96 27 0.38
97 4 0.06
98 6 0.08
99 34 0.48
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.30
Consensus pattern (96 bp):
TGCCATGTCCCAGACATAGTCTTACACTGCCTCATAACTCAAGTCAATGCCATGTCCCAAACATG
GTCTTACACTGACTATCTTTATTGAGGTTGT
Found at i:32345757 original size:10 final size:10
Alignment explanation
Indices: 32345739--32345781 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
32345729 ATTATTAACA
*
32345739 TAATGAATTT
1 TAATTAATTT
32345749 TAATTAATTTT
1 TAATTAA-TTT
32345760 ATAATTAATTT
1 -TAATTAATTT
*
32345771 TGATTAATTT
1 TAATTAATTT
32345781 T
1 T
32345782 GGTTATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
10 16 0.55
11 6 0.21
12 7 0.24
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (10 bp):
TAATTAATTT
Found at i:32345763 original size:22 final size:22
Alignment explanation
Indices: 32345738--32345781 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
32345728 AATTATTAAC
32345738 ATAATGAATTTTAATTAATTTT
1 ATAATGAATTTTAATTAATTTT
* *
32345760 ATAATTAATTTTGATTAATTTT
1 ATAATGAATTTTAATTAATTTT
32345782 GGTTATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (22 bp):
ATAATGAATTTTAATTAATTTT
Found at i:32356373 original size:40 final size:40
Alignment explanation
Indices: 32356318--32356539 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
32356308 TATTCGAATG
*
32356318 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
32356358 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
32356398 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
32356438 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
32356478 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
32356518 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32356540 TACTTGGGTT
Statistics
Matches: 167, Mismatches: 14, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
39 14 0.08
40 151 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.26, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:32364950 original size:40 final size:40
Alignment explanation
Indices: 32364895--32365116 Score: 349
Period size: 40 Copynumber: 5.6 Consensus size: 40
32364885 TATTCGAATG
*
32364895 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32364935 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCCATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
32364975 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32365015 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
32365055 ATATCCGGGCTAAGGCCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
32365095 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
32365117 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.90
41 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:32379200 original size:60 final size:59
Alignment explanation
Indices: 32379124--32379260 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
32379114 AACTATGTTA
* *
32379124 ATATGGGCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
32379184 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
32379244 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
32379261 GTTAACACTG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.76
61 15 0.22
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:32382979 original size:39 final size:39
Alignment explanation
Indices: 32382925--32383141 Score: 285
Period size: 39 Copynumber: 5.5 Consensus size: 39
32382915 TAATGGAGAA
* *
32382925 TTATAT-TCGGGCTAAGTCCTGAAGGCATTCGTCCTGGTG
1 TTATATCT-GGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
32382964 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
**
32383003 TTATATCCAGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
32383042 TTATATCTGGGTTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
32383081 TTATATCTGGGCTAAATTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCTGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
32383120 TTATATCCGGGCTTAAAGTCCC
1 TTATATCTGGGC-T-AAGTCCC
32383142 ACATGCTTTG
Statistics
Matches: 159, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 140 0.88
40 19 0.12
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.32
Consensus pattern (39 bp):
TTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:32385240 original size:32 final size:32
Alignment explanation
Indices: 32385199--32385262 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
32385189 GGAGGTAACC
*
32385199 CCGGTAATTCTTCCAGAAACACATCTGAATAT
1 CCGGTAATTCTTCCAGAAACACATCCGAATAT
32385231 CCGGTAATTCTTCCAGAAACACATCCGAATAT
1 CCGGTAATTCTTCCAGAAACACATCCGAATAT
32385263 TCACATACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.27
Consensus pattern (32 bp):
CCGGTAATTCTTCCAGAAACACATCCGAATAT
Found at i:32388787 original size:48 final size:48
Alignment explanation
Indices: 32388735--32389017 Score: 383
Period size: 48 Copynumber: 5.9 Consensus size: 48
32388725 CACATGAATC
*
32388735 CACATATCATCGCTGATGTCATGTCCTAGACATGGTCTTACACTAGCA
1 CACATATCATCGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCA
*
32388783 CACATATCATCGCTGATGTCATGTCCTAGACATGGTCTTACACTAGCA
1 CACATATCATCGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCA
*
32388831 CACATATCATCGCTGATGTCATGT-CTCAGACATGGTCTTACACT-GTCA
1 CACATATCATCGCTGATGCCATGTCCT-AGACATGGTCTTACACTAG-CA
* * * *
32388879 CACATATCATCGCCGATGCCATGTCCCAAACATGGTCTTACACTGGCA
1 CACATATCATCGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCA
* * *
32388927 CACATATCACCACTGATGCCATGTCCTAGACATGGTCTTATA-TATGCA
1 CACATATCATCGCTGATGCCATGTCCTAGACATGGTCTTACACTA-GCA
* * * * *
32388975 CATATATCATCACTGATGCCGTGTCCCAGACATGGTTTTACAC
1 CACATATCATCGCTGATGCCATGTCCTAGACATGGTCTTACAC
32389018 AGGCACATTA
Statistics
Matches: 212, Mismatches: 17, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
47 4 0.02
48 206 0.97
49 2 0.01
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.29
Consensus pattern (48 bp):
CACATATCATCGCTGATGCCATGTCCTAGACATGGTCTTACACTAGCA
Found at i:32388966 original size:144 final size:144
Alignment explanation
Indices: 32388702--32389017 Score: 422
Period size: 144 Copynumber: 2.2 Consensus size: 144
32388692 TAAAGTACCA
* * * * * * *
32388702 ATGCCATGTCCCCGACATGATCTCACA-TGAATC-CACATATCATCGCTGATGTCATGTCCTAGA
1 ATGCCATGTCCCAGACATGGTCTTACACTG--TCACACATATCATCGCCGATGCCATGTCCCAAA
* * *
32388765 CATGGTCTTACACTAGCACACATATCATCGCTGATGTCATGTCCTAGACATGGTCTTACACTA-G
64 CATGGTCTTACACTAGCACACATATCACCACTGATGCCATGTCCTAGACATGGTCTTACA-TATG
*
32388829 CACACATATCATCGCTG
128 CACACATATCATCACTG
* *
32388846 ATGTCATGTCTCAGACATGGTCTTACACTGTCACACATATCATCGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGTCACACATATCATCGCCGATGCCATGTCCCAAACA
* *
32388911 TGGTCTTACACTGGCACACATATCACCACTGATGCCATGTCCTAGACATGGTCTTATATATGCAC
66 TGGTCTTACACTAGCACACATATCACCACTGATGCCATGTCCTAGACATGGTCTTACATATGCAC
*
32388976 ATATATCATCACTG
131 ACATATCATCACTG
* *
32388990 ATGCCGTGTCCCAGACATGGTTTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
32389018 AGGCACATTA
Statistics
Matches: 149, Mismatches: 20, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
143 4 0.03
144 143 0.96
145 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGTCACACATATCATCGCCGATGCCATGTCCCAAACA
TGGTCTTACACTAGCACACATATCACCACTGATGCCATGTCCTAGACATGGTCTTACATATGCAC
ACATATCATCACTG
Found at i:32390424 original size:48 final size:48
Alignment explanation
Indices: 32390273--32390593 Score: 153
Period size: 48 Copynumber: 6.6 Consensus size: 48
32390263 GGTAAAATGT
* ** * * *
32390273 CGATGCTATGTCCCGGACATGGTCTTATACTGGCTCTCATACATCG-GTGC
1 CGATGCCATGTCCCAAACATGGTCATACACTGGCTCGCATA-AT-GAG-GC
* * * * * ** * ** *
32390323 CAACGCCATGTCCCAAACATGGTCTTACACTGACACATAAAACAATGC
1 CGATGCCATGTCCCAAACATGGTCATACACTGGCTCGCATAATGAGGC
* * * *
32390371 TGATGCCATGTTCCAAATATGGTCATACACTGGCTCGCATATTGAGGC
1 CGATGCCATGTCCCAAACATGGTCATACACTGGCTCGCATAATGAGGC
* * * * * *
32390419 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGT
1 CGATGCCATGTCCCAAACATGGTCATACACTGGCTCGCATAATGAGGC
* * * * * * * **
32390467 CGATGCCATGTCCCAGACATGGTCTTATACTAGCACACAT-ATCAACAC
1 CGATGCCATGTCCCAAACATGGTCATACACTGGCTCGCATAAT-GAGGC
** * ** * * * *
32390515 CGATGCCATGTCCCAGGCATGGTCTTACACAAGCACACAT-ATCAACGC
1 CGATGCCATGTCCCAAACATGGTCATACACTGGCTCGCATAAT-GAGGC
* *
32390563 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAAACATGGTCATACACT
32390594 AGCACACATA
Statistics
Matches: 214, Mismatches: 55, Indels: 6
0.78 0.20 0.02
Matches are distributed among these distances:
47 2 0.01
48 181 0.85
49 1 0.00
50 30 0.14
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (48 bp):
CGATGCCATGTCCCAAACATGGTCATACACTGGCTCGCATAATGAGGC
Found at i:32390538 original size:144 final size:145
Alignment explanation
Indices: 32390273--32390593 Score: 355
Period size: 144 Copynumber: 2.2 Consensus size: 145
32390263 GGTAAAATGT
* * *
32390273 CGATGCTATGTCCCGGACATGGTCTTATACTGGCTCTCATACATCGGTGCCAACGCCATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATCGGTGCCAACGCCATGTCCCA
* * * **
32390338 AACATGGTCTTACACTGACACATAAAACAATGCTGATGCCATGTTCCAAATATGGTCATACACTG
66 AACATGGTCTTACACTGACACATAAAACAA-GCCGATGCCATGTCCCAAACATGGTCATACACAA
* * ** *
32390403 GCTCGCATATTGAGGC
130 GCACACATATCAACGC
* * * *
32390419 CGATGCCATATCCCAGACATGGTCTTACACTGGCTCTCATA-AT--GTGGTCGATGCCATGTCCC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATCGGT-GCCAACGCCATGTCCC
* * * ** *
32390481 AGACATGGTCTTATACTAGCACACATATCAAC-A-CCGATGCCATGTCCCAGGCATGGTCTTACA
65 AAACATGGTCTTACACT-G-ACACATA-AAACAAGCCGATGCCATGTCCCAAACATGGTCATACA
32390544 CAAGCACACATATCAACGC
127 CAAGCACACATATCAACGC
32390563 CGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
32390594 AGCACACATA
Statistics
Matches: 147, Mismatches: 24, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
143 2 0.01
144 94 0.64
145 3 0.02
146 45 0.31
147 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (145 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATACATCGGTGCCAACGCCATGTCCCA
AACATGGTCTTACACTGACACATAAAACAAGCCGATGCCATGTCCCAAACATGGTCATACACAAG
CACACATATCAACGC
Found at i:32390598 original size:48 final size:48
Alignment explanation
Indices: 32390327--32390608 Score: 282
Period size: 48 Copynumber: 5.9 Consensus size: 48
32390317 CGGTGCCAAC
* * * *
32390327 GCCATGTCCCAAACATGGTCTTACACT-G-ACACATAAAACAATGCTGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACAT--ATCAACGCCGAT
* * * * * * * ** *
32390375 GCCATGTTCCAAATATGGTCATACACTGGCTCGCATATTGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGAT
* * * * *** *
32390423 GCCATATCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACAT-ATCAACGCCGAT
* *
32390471 GCCATGTCCCAGACATGGTCTTATACTAGCACACATATCAACACCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGAT
* *
32390519 GCCATGTCCCAGGCATGGTCTTACACAAGCACACATATCAACGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGAT
32390567 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
1 GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAAC
32390609 CAAATGTCTT
Statistics
Matches: 196, Mismatches: 34, Indels: 8
0.82 0.14 0.03
Matches are distributed among these distances:
47 2 0.01
48 187 0.95
49 3 0.02
50 4 0.02
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (48 bp):
GCCATGTCCCAGACATGGTCTTACACTAGCACACATATCAACGCCGAT
Found at i:32390817 original size:31 final size:31
Alignment explanation
Indices: 32390782--32390843 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
32390772 CATATACATA
32390782 GCTTACAATATAATTTCGTGACGCATAACAC
1 GCTTACAATATAATTTCGTGACGCATAACAC
32390813 GCTTACAATATAATTTCGTGACGCATAACAC
1 GCTTACAATATAATTTCGTGACGCATAACAC
32390844 CATCACGCAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (31 bp):
GCTTACAATATAATTTCGTGACGCATAACAC
Found at i:32393293 original size:15 final size:15
Alignment explanation
Indices: 32393260--32393327 Score: 50
Period size: 15 Copynumber: 4.4 Consensus size: 15
32393250 TTATGAAATA
*
32393260 AAGATGACATGAAAACC
1 AAGATGA-A-GAAATCC
32393277 AAGATGAAGAAATCC
1 AAGATGAAGAAATCC
*
32393292 AA-ATTGGAA-AATTCC
1 AAGA-T-GAAGAAATCC
* *
32393307 AAAATAAAGAAATCC
1 AAGATGAAGAAATCC
32393322 AAGATG
1 AAGATG
32393328 CGATACCGTA
Statistics
Matches: 41, Mismatches: 6, Indels: 10
0.72 0.11 0.18
Matches are distributed among these distances:
14 3 0.07
15 26 0.63
16 5 0.12
17 7 0.17
ACGTcount: A:0.54, C:0.13, G:0.16, T:0.16
Consensus pattern (15 bp):
AAGATGAAGAAATCC
Found at i:32397060 original size:48 final size:48
Alignment explanation
Indices: 32397008--32397147 Score: 174
Period size: 48 Copynumber: 2.9 Consensus size: 48
32396998 ATACAACAAT
32397008 GCCGATGCCATGTTCT-GAACATGGTCTTACACTAGCTCACATATTGAG
1 GCCGATGCCATGTTCTAG-ACATGGTCTTACACTAGCTCACATATTGAG
* * * * *
32397056 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTTCTAGACATGGTCTTACACTAGCTCACATATTGAG
* * * * *
32397104 GCTGATGCCACGTCCCAGACATGGTCTTACACTAGCACACATAT
1 GCCGATGCCATGTTCTAGACATGGTCTTACACTAGCTCACATAT
32397148 CAACCAAATG
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 78 0.99
49 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTTCTAGACATGGTCTTACACTAGCTCACATATTGAG
Found at i:32398850 original size:32 final size:34
Alignment explanation
Indices: 32398804--32398871 Score: 95
Period size: 32 Copynumber: 2.1 Consensus size: 34
32398794 GTATATGATA
* *
32398804 TTTTAAATATATATATTTTTATTT-TATTT-TAT
1 TTTTAAATAAATATATGTTTATTTATATTTATAT
*
32398836 TTTTATATAAATATATGTTTATTTATATTTATAT
1 TTTTAAATAAATATATGTTTATTTATATTTATAT
32398870 TT
1 TT
32398872 GTTCGCTAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
32 21 0.68
33 5 0.16
34 5 0.16
ACGTcount: A:0.32, C:0.00, G:0.01, T:0.66
Consensus pattern (34 bp):
TTTTAAATAAATATATGTTTATTTATATTTATAT
Found at i:32399098 original size:44 final size:44
Alignment explanation
Indices: 32399049--32399187 Score: 125
Period size: 44 Copynumber: 3.2 Consensus size: 44
32399039 AATAGATTTT
32399049 ATTCTATTTTGATTTTATTTCCAAATGAGAATTAAAATTGAATA
1 ATTCTATTTTGATTTTATTTCCAAATGAGAATTAAAATTGAATA
* *
32399093 ATTCTATTTTGGGA-TTTA-TTCC-TAT-AG--TTCAACAGATT---TT
1 ATTCTATTTT--GATTTTATTTCCAAATGAGAATT-AA-A-ATTGAATA
* * *
32399133 ATTCCATTTTGATTTTGTTTCCAAAGGAGAATTAAAATTGAATA
1 ATTCTATTTTGATTTTATTTCCAAATGAGAATTAAAATTGAATA
32399177 ATTCTATTTTG
1 ATTCTATTTTG
32399188 GGATTTATTC
Statistics
Matches: 73, Mismatches: 8, Indels: 28
0.67 0.07 0.26
Matches are distributed among these distances:
38 2 0.03
39 3 0.04
40 16 0.22
41 6 0.08
42 6 0.08
43 7 0.10
44 27 0.37
45 4 0.05
46 2 0.03
ACGTcount: A:0.32, C:0.09, G:0.12, T:0.47
Consensus pattern (44 bp):
ATTCTATTTTGATTTTATTTCCAAATGAGAATTAAAATTGAATA
Found at i:32399142 original size:84 final size:84
Alignment explanation
Indices: 32398997--32399283 Score: 364
Period size: 84 Copynumber: 3.4 Consensus size: 84
32398987 GAATAAAAAA
** ** * * * *
32398997 TAAAATTGAATAATTCTATTTTAAGATTTATTTTTGTTGTCCAATAGATTTTATTCTATTTTGAT
1 TAAAATTGAATAATTCTATTTTGGGATTTATTCCTGTAGTTCAACAGATTTTATTCCATTTTGAT
* *
32399062 TTTATTTCCAAATGAGAAT
66 TTTGTTTCCAAAGGAGAAT
*
32399081 TAAAATTGAATAATTCTATTTTGGGATTTATTCCTATAGTTCAACAGATTTTATTCCATTTTGAT
1 TAAAATTGAATAATTCTATTTTGGGATTTATTCCTGTAGTTCAACAGATTTTATTCCATTTTGAT
32399146 TTTGTTTCCAAAGGAGAAT
66 TTTGTTTCCAAAGGAGAAT
* * *
32399165 TAAAATTGAATAATTCTATTTTGGGATTTATTCCTGTCGTTTAACAGATTTTATTCCATTTTGAC
1 TAAAATTGAATAATTCTATTTTGGGATTTATTCCTGTAGTTCAACAGATTTTATTCCATTTTGAT
**
32399230 TTTGTTTCCAAACAAG-AT
66 TTTGTTTCCAAAGGAGAAT
* * * *
32399248 T-TAATTAAATAATT-TGTTTTTGGGATTTAATCCTGT
1 TAAAATTGAATAATTCT-ATTTTGGGATTTATTCCTGT
32399284 TGTCAACGTA
Statistics
Matches: 181, Mismatches: 21, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
81 1 0.01
82 29 0.16
83 3 0.02
84 148 0.82
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.48
Consensus pattern (84 bp):
TAAAATTGAATAATTCTATTTTGGGATTTATTCCTGTAGTTCAACAGATTTTATTCCATTTTGAT
TTTGTTTCCAAAGGAGAAT
Found at i:32404299 original size:46 final size:46
Alignment explanation
Indices: 32404147--32404362 Score: 184
Period size: 46 Copynumber: 4.6 Consensus size: 46
32404137 TCACTTGTGT
* * * * **
32404147 GAGCTAGTGTAAGACATGTCTAGGACATGCATTGGCCACGTTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
* * * * * * *
32404193 AAGCCAGTGTAAGACCATGTCTGGTACATGGCATCAGCATTGGGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGA
* *
32404241 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATG-A
* * * *
32404288 -AGCCAGTGTAAGACATGTTTGGGACATGCTTTGG-CTATGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGA
* *
32404333 TAGTCAGTGTAAGACCATGTCTGGGACATG
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG
32404363 GTATCGACAC
Statistics
Matches: 135, Mismatches: 29, Indels: 11
0.77 0.17 0.06
Matches are distributed among these distances:
45 3 0.02
46 71 0.53
47 40 0.30
48 21 0.16
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGA
Found at i:32407868 original size:16 final size:16
Alignment explanation
Indices: 32407828--32407865 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
32407818 AACATTACCA
* *
32407828 CGAGTTCATCACTTAT
1 CGAGTTTATTACTTAT
32407844 CGAGTTTATTACTTAT
1 CGAGTTTATTACTTAT
32407860 -GAGTTT
1 CGAGTTT
32407866 TATGTACATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.24, C:0.16, G:0.16, T:0.45
Consensus pattern (16 bp):
CGAGTTTATTACTTAT
Found at i:32420232 original size:48 final size:48
Alignment explanation
Indices: 32420161--32420267 Score: 126
Period size: 48 Copynumber: 2.2 Consensus size: 48
32420151 TGCCTATCTG
*** * *
32420161 GGACATGGCATCGGTGATGATATGTGTG-CCAGTGTAAGACCATGTCTA
1 GGACATGGCATCAACGATGATATGTGGGTCCA-TGTAAGACCATGTCGA
* * *
32420209 GGACATGGCATCAACGATGATATGTGGGTTCATGTAAGGCCATGTCGG
1 GGACATGGCATCAACGATGATATGTGGGTCCATGTAAGACCATGTCGA
32420257 GGACATGGCAT
1 GGACATGGCAT
32420268 TGATACTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
48 48 0.96
49 2 0.04
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (48 bp):
GGACATGGCATCAACGATGATATGTGGGTCCATGTAAGACCATGTCGA
Found at i:32422452 original size:32 final size:33
Alignment explanation
Indices: 32422392--32422477 Score: 113
Period size: 32 Copynumber: 2.6 Consensus size: 33
32422382 GAAATTTTAA
*
32422392 ATATAAATATTTATTTTATTTTATTTTATTTTT
1 ATATAAATATTTATTTTATTTTATTTTATATTT
32422425 ATATAAATATTT-TTTTA-TTTATATTTATATTT
1 ATATAAATATTTATTTTATTTTAT-TTTATATTT
**
32422457 ATATTTATATTTATATTTATT
1 ATATAAATATTTAT-TTTATT
32422478 CACTAACATA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
31 5 0.11
32 23 0.50
33 13 0.28
34 4 0.09
35 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (33 bp):
ATATAAATATTTATTTTATTTTATTTTATATTT
Found at i:32422457 original size:12 final size:12
Alignment explanation
Indices: 32422398--32422476 Score: 83
Period size: 12 Copynumber: 6.7 Consensus size: 12
32422388 TTAAATATAA
32422398 ATATTTAT-TTT
1 ATATTTATATTT
32422409 AT-TTTAT-TTT
1 ATATTTATATTT
* *
32422419 ATTTTTATATAAAT
1 ATATTTATAT--TT
* *
32422433 ATTTTTTTATTT
1 ATATTTATATTT
32422445 ATATTTATATTT
1 ATATTTATATTT
32422457 ATATTTATATTT
1 ATATTTATATTT
32422469 ATATTTAT
1 ATATTTAT
32422477 TCACTAACAT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
10 10 0.17
11 7 0.12
12 32 0.54
14 10 0.17
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
ATATTTATATTT
Found at i:32422461 original size:18 final size:18
Alignment explanation
Indices: 32422398--32422476 Score: 83
Period size: 18 Copynumber: 4.4 Consensus size: 18
32422388 TTAAATATAA
32422398 ATATTTAT-TTTAT-TTT
1 ATATTTATATTTATATTT
* *
32422414 AT-TTTATTTTTATATAAAT
1 ATATTTATATTTATAT--TT
* *
32422433 ATTTTTTTATTTATATTT
1 ATATTTATATTTATATTT
32422451 ATATTTATATTTATATTT
1 ATATTTATATTTATATTT
32422469 ATATTTAT
1 ATATTTAT
32422477 TCACTAACAT
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
15 5 0.10
16 7 0.13
17 1 0.02
18 25 0.48
19 3 0.06
20 11 0.21
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (18 bp):
ATATTTATATTTATATTT
Found at i:32422853 original size:13 final size:14
Alignment explanation
Indices: 32422828--32422860 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
32422818 AAAGACATGA
32422828 ATTTAAGAATTAAG
1 ATTTAAGAATTAAG
*
32422842 -TTTAAGATTTAAG
1 ATTTAAGAATTAAG
32422855 ATTTAA
1 ATTTAA
32422861 AGTTTAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (14 bp):
ATTTAAGAATTAAG
Found at i:32422853 original size:20 final size:21
Alignment explanation
Indices: 32422828--32422867 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
32422818 AAAGACATGA
32422828 ATTTAAGAATT-AAGTTTAAG
1 ATTTAAGAATTAAAGTTTAAG
*
32422848 ATTTAAGATTTAAAGTTTAA
1 ATTTAAGAATTAAAGTTTAA
32422868 ATGATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (21 bp):
ATTTAAGAATTAAAGTTTAAG
Found at i:32422868 original size:7 final size:7
Alignment explanation
Indices: 32422828--32422860 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
32422818 AAAGACATGA
32422828 ATTTAAG
1 ATTTAAG
*
32422835 AATTAAG
1 ATTTAAG
32422842 -TTTAAG
1 ATTTAAG
32422848 ATTTAAG
1 ATTTAAG
32422855 ATTTAA
1 ATTTAA
32422861 AGTTTAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (7 bp):
ATTTAAG
Found at i:32424486 original size:145 final size:145
Alignment explanation
Indices: 32424301--32424590 Score: 580
Period size: 145 Copynumber: 2.0 Consensus size: 145
32424291 GTATAGAAGT
32424301 AAAATTCTTATAGCACTTTTTCCTTTGTTCATAAGATCTGATTTTGAAATCTCATTTAAAGAATA
1 AAAATTCTTATAGCACTTTTTCCTTTGTTCATAAGATCTGATTTTGAAATCTCATTTAAAGAATA
32424366 TCGAATATCCTATTTTTTGAAAGGGGATAAAATACAATGACTTCTTCTGCTTCTGAGGTTTTTTC
66 TCGAATATCCTATTTTTTGAAAGGGGATAAAATACAATGACTTCTTCTGCTTCTGAGGTTTTTTC
32424431 TCCTTTCTCCTTTCC
131 TCCTTTCTCCTTTCC
32424446 AAAATTCTTATAGCACTTTTTCCTTTGTTCATAAGATCTGATTTTGAAATCTCATTTAAAGAATA
1 AAAATTCTTATAGCACTTTTTCCTTTGTTCATAAGATCTGATTTTGAAATCTCATTTAAAGAATA
32424511 TCGAATATCCTATTTTTTGAAAGGGGATAAAATACAATGACTTCTTCTGCTTCTGAGGTTTTTTC
66 TCGAATATCCTATTTTTTGAAAGGGGATAAAATACAATGACTTCTTCTGCTTCTGAGGTTTTTTC
32424576 TCCTTTCTCCTTTCC
131 TCCTTTCTCCTTTCC
32424591 TTTTCCCATG
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
145 145 1.00
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.43
Consensus pattern (145 bp):
AAAATTCTTATAGCACTTTTTCCTTTGTTCATAAGATCTGATTTTGAAATCTCATTTAAAGAATA
TCGAATATCCTATTTTTTGAAAGGGGATAAAATACAATGACTTCTTCTGCTTCTGAGGTTTTTTC
TCCTTTCTCCTTTCC
Found at i:32430497 original size:42 final size:42
Alignment explanation
Indices: 32430389--32430499 Score: 150
Period size: 43 Copynumber: 2.6 Consensus size: 42
32430379 ATATATCAGT
* * **
32430389 GAAGCTCCCCACATGAGCTTAAGTGACAAGCTGTGTATTATT
1 GAAGCTCCCCACAAGAGCTTAAGTGACAAGCTATGTATTAGC
*
32430431 GAATCTCCCCCACAAGAGCTTAAGTGACAAGCTATGTATTAGC
1 GAAGCT-CCCCACAAGAGCTTAAGTGACAAGCTATGTATTAGC
**
32430474 GAAGCTCCCCACGCGAGCTTAAGTGA
1 GAAGCTCCCCACAAGAGCTTAAGTGA
32430500 TTGTGCTCCT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
42 23 0.38
43 37 0.62
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.23
Consensus pattern (42 bp):
GAAGCTCCCCACAAGAGCTTAAGTGACAAGCTATGTATTAGC
Found at i:32434035 original size:48 final size:46
Alignment explanation
Indices: 32433977--32434146 Score: 173
Period size: 48 Copynumber: 3.6 Consensus size: 46
32433967 AAAGCATGAG
* *
32433977 AGCCAGTGTAAGACATGTCTGGGACATGCGTCGGTCTCGAGATATTTA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATA--TA
* * *
32434025 AGCCAGTGTAAGACATGTCTGTGACATGCATC-GACATTGAGACGA-A
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGAC-TCGAGA-TATA
* * *
32434071 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATATACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATAT--A
* * *
32434119 AGCTAGTGTAAGACCTATCTGGGACATG
1 AGCCAGTGTAAGACATGTCTGGGACATG
32434147 GCTTCAACTT
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
45 1 0.01
46 35 0.34
47 4 0.04
48 62 0.60
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGACTCGAGATATA
Found at i:32434097 original size:46 final size:45
Alignment explanation
Indices: 32433977--32434281 Score: 165
Period size: 48 Copynumber: 6.4 Consensus size: 45
32433967 AAAGCATGAG
* * *
32433977 AGCCAGTGTAAGACATGTCTGGGACATGCGTCGGTCTCGAGATATTTA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATC-GACTCGAGAGA--TA
* *
32434025 AGCCAGTGTAAGACATGTCTGTGACATGCATCGACATTGAGACGA-A
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGAC-TCGAGA-GATA
* * * *
32434071 AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGATATACA
1 AGCCAGTGTAAGACATGTCTGGGACATGCATC-GACTCGAGAGAT--A
* * * * * * * *
32434119 AGCTAGTGTAAGACCTATCTGGGACATGGCTTCAACTTGTTGTG-T-
1 AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGACTCG-AGAGATA
*
32434164 -GCCAGTGTAAGACCTAT-TC-GGGACATGGCATCGACATCGATAGATGA
1 AGCCAGTGTAAGA-C-ATGTCTGGGACAT-GCATCGAC-TCGAGAGAT-A
* * * *
32434211 GAGCCAGTGTAAGACCTGTTTGGGACATGGCACCGACCTCGTTATATGA-A
1 -AGCCAGTGTAAGACATGTCTGGGACAT-GCATCGA-CTCG--AGA-GATA
32434261 AGCCAGTGTAAGACCATGTCT
1 AGCCAGTGTAAGA-CATGTCT
32434282 AGGATATGGC
Statistics
Matches: 202, Mismatches: 32, Indels: 44
0.73 0.12 0.16
Matches are distributed among these distances:
44 26 0.13
45 7 0.03
46 36 0.18
47 5 0.02
48 67 0.33
49 49 0.24
50 7 0.03
51 3 0.01
52 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGACTCGAGAGATA
Found at i:32434224 original size:49 final size:49
Alignment explanation
Indices: 32434164--32434275 Score: 161
Period size: 49 Copynumber: 2.3 Consensus size: 49
32434154 CTTGTTGTGT
* *
32434164 GCCAGTGTAAGACCTATTCGGGACATGGCATCGACATCGATAGATGAGA
1 GCCAGTGTAAGACCTATTCGGGACATGGCACCGACATCGATAGATGAAA
* * * * *
32434213 GCCAGTGTAAGACCTGTTTGGGACATGGCACCGACCTCGTTATATGAAA
1 GCCAGTGTAAGACCTATTCGGGACATGGCACCGACATCGATAGATGAAA
32434262 GCCAGTGTAAGACC
1 GCCAGTGTAAGACC
32434276 ATGTCTAGGA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 56 1.00
ACGTcount: A:0.29, C:0.22, G:0.28, T:0.21
Consensus pattern (49 bp):
GCCAGTGTAAGACCTATTCGGGACATGGCACCGACATCGATAGATGAAA
Found at i:32440789 original size:12 final size:12
Alignment explanation
Indices: 32440772--32440799 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32440762 GGCATGTGAC
32440772 AAAAAATAATAA
1 AAAAAATAATAA
32440784 AAAAAATAATAA
1 AAAAAATAATAA
32440796 AAAA
1 AAAA
32440800 TAAAAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (12 bp):
AAAAAATAATAA
Found at i:32440902 original size:20 final size:19
Alignment explanation
Indices: 32440870--32440914 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
32440860 AAATTGTAAG
* **
32440870 AAAAATTGTAAAATTTTAT
1 AAAAATCGTAAAAAATTAT
32440889 AAAAATCGTAAAAAAATTAT
1 AAAAATCGT-AAAAAATTAT
32440909 AAAAAT
1 AAAAAT
32440915 TATCATACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAAATCGTAAAAAATTAT
Found at i:32445714 original size:3 final size:3
Alignment explanation
Indices: 32445706--32445744 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
32445696 CTACATGATT
*
32445706 TTC TTC TTC TTC TTC TTC TTC CTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
32445745 AATAGCGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
TTC
Found at i:32449201 original size:22 final size:22
Alignment explanation
Indices: 32449173--32449214 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
32449163 ATTTTTAATA
32449173 TTTAAAAATATTCA-TAATTTTT
1 TTTAAAAATATT-ATTAATTTTT
*
32449195 TTTAAAACTATTATTAATTT
1 TTTAAAAATATTATTAATTT
32449215 ATTCTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTAAAAATATTATTAATTTTT
Found at i:32449830 original size:4 final size:4
Alignment explanation
Indices: 32449817--32449902 Score: 156
Period size: 4 Copynumber: 21.8 Consensus size: 4
32449807 CTTGAGGAGT
32449817 TGTA -GTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
*
32449864 TGTA TGTA TGTA TGTA TGTA TGTA TGAA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
32449903 TTTCTATGAA
Statistics
Matches: 79, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
3 3 0.04
4 76 0.96
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (4 bp):
TGTA
Found at i:32450486 original size:25 final size:26
Alignment explanation
Indices: 32450457--32450590 Score: 127
Period size: 25 Copynumber: 5.3 Consensus size: 26
32450447 CCAAACCTAA
*
32450457 CCTTTGTGGCGGA-TTATTTGTAAAG
1 CCTTTGTGGCGGAGTTATCTGTAAAG
32450482 CCTTTGTGGC-GAGTTATCTGTAAAG
1 CCTTTGTGGCGGAGTTATCTGTAAAG
*
32450507 CCTTTGTGGC-GAGTTAACTGTAAAG
1 CCTTTGTGGCGGAGTTATCTGTAAAG
* * * *
32450532 GCTATATGGC-GAGCTATCTGTAAAG
1 CCTTTGTGGCGGAGTTATCTGTAAAG
* ** *
32450557 CATTTGTGG-AAAATTATCTGTAAAG
1 CCTTTGTGGCGGAGTTATCTGTAAAG
32450582 -CTCTTGTGG
1 CCT-TTGTGG
32450591 TGAATTATCT
Statistics
Matches: 91, Mismatches: 15, Indels: 6
0.81 0.13 0.05
Matches are distributed among these distances:
24 3 0.03
25 88 0.97
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (26 bp):
CCTTTGTGGCGGAGTTATCTGTAAAG
Found at i:32450516 original size:50 final size:50
Alignment explanation
Indices: 32450457--32450668 Score: 153
Period size: 50 Copynumber: 4.2 Consensus size: 50
32450447 CCAAACCTAA
*
32450457 CCTTTGTGGCGGATTATTTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAG
1 CCTTTGTGGCGGATTATCTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAG
* * * * *
32450507 CCTTTGTGGC-GAGTTAACTGTAAAGGCTATATGGCGAGCTATCTGTAAAG
1 CCTTTGTGGCGGA-TTATCTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAG
* *** * * **
32450557 CATTTGTGGAAAATTATCTGTAAAG-CTCTTGTGGTGAATTATCTAAAAAG
1 CCTTTGTGGCGGATTATCTGTAAAGCCT-TTGTGGCGAGTTATCTGTAAAG
* * * * * **
32450607 CCTATGTGACGTATTAT-TCATAAAGCCTTAGTGGTAAAGTTATCTG-AGAAG
1 CCTTTGTGGCGGATTATCT-GTAAAGCCTTTGTGG-CGAGTTATCTGTA-AAG
*
32450658 CCCTTGTGGCG
1 CCTTTGTGGCG
32450669 AGTCATGTGG
Statistics
Matches: 123, Mismatches: 32, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
49 5 0.04
50 97 0.79
51 21 0.17
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (50 bp):
CCTTTGTGGCGGATTATCTGTAAAGCCTTTGTGGCGAGTTATCTGTAAAG
Found at i:32451898 original size:29 final size:29
Alignment explanation
Indices: 32451861--32451921 Score: 122
Period size: 29 Copynumber: 2.1 Consensus size: 29
32451851 AACACTCATC
32451861 ACTTTTTTCTCAACTTCGTTTATTTTCTT
1 ACTTTTTTCTCAACTTCGTTTATTTTCTT
32451890 ACTTTTTTCTCAACTTCGTTTATTTTCTT
1 ACTTTTTTCTCAACTTCGTTTATTTTCTT
32451919 ACT
1 ACT
32451922 CTCTAGAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.15, C:0.21, G:0.03, T:0.61
Consensus pattern (29 bp):
ACTTTTTTCTCAACTTCGTTTATTTTCTT
Found at i:32452198 original size:32 final size:32
Alignment explanation
Indices: 32452153--32452229 Score: 102
Period size: 32 Copynumber: 2.4 Consensus size: 32
32452143 TAATATTTTT
* *
32452153 TAAAGGTTGATTAATACAAA-TGCTTGAAGAAA
1 TAAAGATTGATTAATACAAACCG-TTGAAGAAA
* *
32452185 TTAGGATTGATTAATACAAACCGTTGAAGAAA
1 TAAAGATTGATTAATACAAACCGTTGAAGAAA
32452217 TAAAGATTGATTA
1 TAAAGATTGATTA
32452230 CAATTTTAGC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 37 0.97
33 1 0.03
ACGTcount: A:0.45, C:0.06, G:0.18, T:0.30
Consensus pattern (32 bp):
TAAAGATTGATTAATACAAACCGTTGAAGAAA
Found at i:32453623 original size:30 final size:30
Alignment explanation
Indices: 32453589--32453653 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
32453579 CATGTAAGGG
32453589 TCACACGCCCGTGTGAACAGGCCGTGTGCC
1 TCACACGCCCGTGTGAACAGGCCGTGTGCC
*
32453619 TCACACGCCCGTGTGAACAGGCTGTGTGCC
1 TCACACGCCCGTGTGAACAGGCCGTGTGCC
32453649 TCACA
1 TCACA
32453654 TGGCTGCTAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.18, C:0.35, G:0.28, T:0.18
Consensus pattern (30 bp):
TCACACGCCCGTGTGAACAGGCCGTGTGCC
Found at i:32457602 original size:43 final size:43
Alignment explanation
Indices: 32457515--32457672 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
32457505 AGCTCGTACA
* **
32457515 ATGCC-ATATCCCAGATATGGTCTTACATGTTAT-T-ACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCTCA-ATA-CG
* * * * *
32457557 ATGCCACTATCTCAGACAGGGTCTTACATGAAATC-GATTAACG
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCTCAAT-ACG
* * *
32457600 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
1 ATGCCAATATCCCAGACATGGTCTTACATGAAATCTCAATACG
32457643 ATGCCAATATCCCAGACATGGTCTTACATG
1 ATGCCAATATCCCAGACATGGTCTTACATG
32457673 TATTCACATC
Statistics
Matches: 94, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 5 0.05
43 85 0.90
44 4 0.04
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACATGAAATCTCAATACG
Found at i:32459432 original size:40 final size:40
Alignment explanation
Indices: 32459388--32459464 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
32459378 TTAGTGCCAC
*
32459388 ATATAGCCGAAGCTAT-TCCAATTCGCACACTAAGTGCTTT
1 ATATAACCGAAGCTATCTCCAA-TCGCACACTAAGTGCTTT
* *
32459428 ATATAACCTAAGCTATCTCGAATCGCACACTAAGTGC
1 ATATAACCGAAGCTATCTCCAATCGCACACTAAGTGC
32459465 CAAACATAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 29 0.88
41 4 0.12
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.27
Consensus pattern (40 bp):
ATATAACCGAAGCTATCTCCAATCGCACACTAAGTGCTTT
Found at i:32462670 original size:26 final size:26
Alignment explanation
Indices: 32462641--32462748 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
32462631 TCATACAAAT
32462641 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32462667 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32462693 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32462719 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32462745 TGAT
1 TGAT
32462749 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32464382 original size:27 final size:27
Alignment explanation
Indices: 32464342--32464482 Score: 182
Period size: 27 Copynumber: 5.2 Consensus size: 27
32464332 AGGAAGCGTC
*
32464342 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
32464369 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
32464395 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
32464423 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
32464450 CTGGTGGCTCTGCCACAA-TATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
32464477 CTGGTG
1 CTGGTG
32464483 ACTTCGTCAC
Statistics
Matches: 101, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
26 10 0.10
27 87 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:32464421 original size:54 final size:54
Alignment explanation
Indices: 32464339--32464482 Score: 245
Period size: 54 Copynumber: 2.7 Consensus size: 54
32464329 TGGAGGAAGC
32464339 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
32464393 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
32464447 GTTCTGGTGGCTCTGCCACAA-TATTTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
32464483 ACTTCGTCAC
Statistics
Matches: 86, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
53 5 0.06
54 81 0.94
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:32464494 original size:81 final size:80
Alignment explanation
Indices: 32464342--32464500 Score: 207
Period size: 81 Copynumber: 2.0 Consensus size: 80
32464332 AGGAAGCGTC
*
32464342 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
32464407 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
32464423 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATTTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
32464486 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
32464501 GCAGCCTCGC
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
80 16 0.23
81 53 0.77
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:32467709 original size:47 final size:47
Alignment explanation
Indices: 32467655--32468057 Score: 698
Period size: 47 Copynumber: 8.6 Consensus size: 47
32467645 TATTTGAATA
*
32467655 AATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32467702 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32467749 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
32467796 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32467843 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
32467890 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32467937 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
32467984 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
32468031 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
32468058 TCCCGAAGGG
Statistics
Matches: 343, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 343 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:32473981 original size:26 final size:26
Alignment explanation
Indices: 32473952--32474059 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
32473942 TCATACAAAT
32473952 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32473978 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32474004 TGATAATGGGTTTGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32474030 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32474056 TGAT
1 TGAT
32474060 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32475697 original size:27 final size:28
Alignment explanation
Indices: 32475655--32475795 Score: 161
Period size: 27 Copynumber: 5.2 Consensus size: 28
32475645 AGGAAGCGTC
* *
32475655 CTGGTGGCTATGCCACAAT-TATCTAAT
1 CTGGTGGCTCTGCCACAATATATCTGAT
*
32475682 CTGGTGGCTCTACCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAATATATCTGAT
*
32475708 CCTGGTGGCTATGCCACAAT-TATCTGAT
1 -CTGGTGGCTCTGCCACAATATATCTGAT
*
32475736 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAATATATCTGAT
*
32475763 CTGGTGGCTCTACCACAATAT-T-TGTAT
1 CTGGTGGCTCTGCCACAATATATCTG-AT
32475790 CTGGTG
1 CTGGTG
32475796 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 9, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
26 7 0.07
27 84 0.86
28 7 0.07
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATATATCTGAT
Found at i:32475738 original size:54 final size:54
Alignment explanation
Indices: 32475652--32475795 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
32475642 TGGAGGAAGC
*
32475652 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
*
32475706 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
* * * *
32475760 GTTCTGGTGGCTCTACCACAA-TATTTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
32475796 ACTTCGTCAC
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCT
Found at i:32475807 original size:81 final size:80
Alignment explanation
Indices: 32475655--32475813 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 80
32475645 AGGAAGCGTC
*
32475655 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
32475720 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* ** * *
32475736 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTACCACA-ATATTTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTAATCTGGTGGCTCTACCACATATATCTGT-CCTGGTGACT
*
32475799 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
32475814 GCAGCCTTGC
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
80 16 0.24
81 52 0.76
ACGTcount: A:0.21, C:0.25, G:0.20, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:32482793 original size:48 final size:46
Alignment explanation
Indices: 32482626--32482803 Score: 184
Period size: 46 Copynumber: 3.8 Consensus size: 46
32482616 GGTAGGATGT
* *
32482626 CGATGCCATGTCCCAGAAATGGTCTTACACTGG--CTCATCTCGTAGC
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCAT-GC
* * * *
32482672 AGATG-CATGTCCCAGACATGTCTTACACTGGCTCACATTTCGAGGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTC-ATGC
* * * *
32482718 TGAT-ACATGTCCCAGACGTGTCTTACACTAGCTCTCATCTCAATGC
1 CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTC-ATGC
*
32482764 CGATGCCATGTCCCATACATGGTCTTACACTGGCTCTCAT
1 CGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCAT
32482804 AATGTGGTCG
Statistics
Matches: 108, Mismatches: 18, Indels: 10
0.79 0.13 0.07
Matches are distributed among these distances:
44 12 0.11
45 13 0.12
46 53 0.49
47 12 0.11
48 18 0.17
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.28
Consensus pattern (46 bp):
CGATGCCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCATGC
Found at i:32482820 original size:93 final size:92
Alignment explanation
Indices: 32482631--32482844 Score: 233
Period size: 93 Copynumber: 2.3 Consensus size: 92
32482621 GATGTCGATG
* * *
32482631 CCATGTCCCAGAAATGGTCTTACACT-G-GCTCATCTCGTAGCAGATGCATGTCCCAGACATGTC
1 CCATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCATAGCAGATGCATGTCCCAGACATGTC
*
32482694 TTACACTGGCTCACATTTCGAGGCTGAT
65 TTACACTGGCTCACATATCGAGGCTGAT
* * * *
32482722 ACATGTCCCAGACGTGTCTTACACTAGCTCTCATCTCA-ATGCCGATGCCATGTCCCATACATGG
1 CCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATA-GCAGATG-CATGTCCCAGACAT-G
* *
32482786 TCTTACACTGGCTCTCATAAT-GTGG-TCGA-
63 TCTTACACTGGCTCACAT-ATCGAGGCT-GAT
*
32482815 CCATGTCCTAGACATGTCTTACACTAGCTC
1 CCATGTCCCAGACATGTCTTACACTAGCTC
32482845 ACAATAACCC
Statistics
Matches: 103, Mismatches: 13, Indels: 12
0.80 0.10 0.09
Matches are distributed among these distances:
90 10 0.10
91 14 0.14
92 14 0.14
93 41 0.40
94 23 0.22
95 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (92 bp):
CCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATAGCAGATGCATGTCCCAGACATGTCT
TACACTGGCTCACATATCGAGGCTGAT
Found at i:32490291 original size:46 final size:46
Alignment explanation
Indices: 32490184--32490405 Score: 265
Period size: 46 Copynumber: 4.8 Consensus size: 46
32490174 GGGGTAGGAT
32490184 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCATCTCGTA-
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCG-AG
*
32490230 GCAGATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGAG
* * * *
32490276 GCCGATGCATTTCCCAGACATGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
* * *
32490322 GCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGAG
*
32490370 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTC
32490406 ACAATAACCT
Statistics
Matches: 153, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
44 12 0.08
45 16 0.10
46 72 0.47
47 28 0.18
48 24 0.16
49 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGAG
Found at i:32490375 original size:94 final size:92
Alignment explanation
Indices: 32490184--32490405 Score: 283
Period size: 94 Copynumber: 2.4 Consensus size: 92
32490174 GGGGTAGGAT
* *
32490184 GCCGATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCATCTCGTAGCAGATGCATGTCCCAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCATAGCAGATGCATGTCCCAG
*
32490247 ACATGTCTTACACTGGCTTACATCTCGAG
64 ACATGTCTTACACTGGCTTACATATCGAG
* *
32490276 GCCGATGCATTTCCCAGACATGTCTTACACTAGCTCTCATCTCA-ATGCCGATGCCATGTCCCAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATA-GCAGATG-CATGTCCCAG
* *
32490340 ACATGGTCTTATACTGGCTCT-CATAAT-GTG
64 ACAT-GTCTTACACTGGCT-TACAT-ATCGAG
32490370 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
32490406 ACAATAACCT
Statistics
Matches: 115, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
90 10 0.09
91 15 0.13
92 21 0.18
93 14 0.12
94 53 0.46
95 2 0.02
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (92 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCATAGCAGATGCATGTCCCAGAC
ATGTCTTACACTGGCTTACATATCGAG
Found at i:32495119 original size:27 final size:27
Alignment explanation
Indices: 32495089--32495267 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
32495079 ATATTAAGTC
* *
32495089 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32495116 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
32495144 CGCACACTTAGTGCTACGTAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
32495171 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
32495198 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
32495225 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
32495252 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
32495268 TACAATTTAC
Statistics
Matches: 129, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32495228 original size:54 final size:54
Alignment explanation
Indices: 32495089--32495267 Score: 216
Period size: 54 Copynumber: 3.3 Consensus size: 54
32495079 ATATTAAGTC
* * * **
32495089 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* * *
32495144 CGCACACTTAGTGCTACGTAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
32495198 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
32495252 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
32495268 TACAATTTAC
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 59 0.56
55 46 0.43
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:32503245 original size:27 final size:27
Alignment explanation
Indices: 32503215--32503393 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
32503205 ATATTAAGTC
* *
32503215 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
32503242 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
32503270 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
32503297 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
32503324 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
32503351 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
32503378 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
32503394 TACAATTTAC
Statistics
Matches: 131, Mismatches: 18, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
27 105 0.80
28 26 0.20
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:32503354 original size:54 final size:54
Alignment explanation
Indices: 32503215--32503393 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 54
32503205 ATATTAAGTC
* * * **
32503215 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
32503270 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
32503324 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
32503378 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
32503394 TACAATTTAC
Statistics
Matches: 108, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 47 0.44
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:32508493 original size:26 final size:26
Alignment explanation
Indices: 32508457--32508510 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
32508447 AACAAGGAGA
32508457 ATGTTAAAGCATGACCACACATTACT
1 ATGTTAAAGCATGACCACACATTACT
*
32508483 ATGTTAGAGCATGACCACACATTACT
1 ATGTTAAAGCATGACCACACATTACT
32508509 AT
1 AT
32508511 ACTAGATGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (26 bp):
ATGTTAAAGCATGACCACACATTACT
Found at i:32508516 original size:26 final size:26
Alignment explanation
Indices: 32508464--32508516 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
32508454 AGAATGTTAA
**
32508464 AGCATGACCACACATTACTATGTTAG
1 AGCATGACCACACATTACTATACTAG
32508490 AGCATGACCACACATTACTATACTAG
1 AGCATGACCACACATTACTATACTAG
32508516 A
1 A
32508517 TGATAACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.25
Consensus pattern (26 bp):
AGCATGACCACACATTACTATACTAG
Found at i:32520354 original size:46 final size:44
Alignment explanation
Indices: 32520291--32520403 Score: 147
Period size: 46 Copynumber: 2.5 Consensus size: 44
32520281 CAAGAGCTAG
* *
32520291 TGTAAGAAATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGCCAA
1 TGTAAGACATGTTTGGGACATGCATCGG-CTACGAGATGT--GCCAA
* *
32520337 TGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGTGTCAG
1 TGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGTGCCAA
32520381 TGTAAGACCATGTTTGGGACATG
1 TGTAAGA-CATGTTTGGGACATG
32520404 GCATTGGCAC
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
44 10 0.16
45 17 0.28
46 34 0.56
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (44 bp):
TGTAAGACATGTTTGGGACATGCATCGGCTACGAGATGTGCCAA
Found at i:32520447 original size:48 final size:50
Alignment explanation
Indices: 32520369--32520509 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 50
32520359 CATCGGCTAC
* * * **
32520369 GAGATGTGTCAGTGTAAGACCATGTT-TGGGACATGGCATTGGCACGTATA-
1 GAGA-GTGTTAGTGTAAGACCAT-TTCTGGGACATGGCATCGACACAAATAT
32520419 GAG-GTGTTAGTGTAAGACCATTTCTGGGACATGGCATCGACACAAATAT
1 GAGAGTGTTAGTGTAAGACCATTTCTGGGACATGGCATCGACACAAATAT
* * * * *
32520468 GTGAGAGCTAGTGTAAGACCATGTCTGGCACATGGCATCGAC
1 GAGAGTGTTAGTGTAAGACCATTTCTGGGACATGGCATCGAC
32520510 TTGATGGATG
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
47 2 0.03
48 37 0.47
49 2 0.03
50 37 0.47
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (50 bp):
GAGAGTGTTAGTGTAAGACCATTTCTGGGACATGGCATCGACACAAATAT
Found at i:32520488 original size:50 final size:48
Alignment explanation
Indices: 32520379--32520509 Score: 147
Period size: 50 Copynumber: 2.7 Consensus size: 48
32520369 GAGATGTGTC
* * ** * *
32520379 AGTGTAAGACCATGTT-TGGGACATGGCATTGGCACGTATAGAGGTGTT
1 AGTGTAAGACCAT-TTCTGGGACATGGCATCGACACAAATAGAGGAGCT
*
32520427 AGTGTAAGACCATTTCTGGGACATGGCATCGACACAAATATGTGAGAGCT
1 AGTGTAAGACCATTTCTGGGACATGGCATCGACACAAATA-GAG-GAGCT
* *
32520477 AGTGTAAGACCATGTCTGGCACATGGCATCGAC
1 AGTGTAAGACCATTTCTGGGACATGGCATCGAC
32520510 TTGATGGATG
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
47 2 0.03
48 33 0.46
49 2 0.03
50 34 0.48
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATTTCTGGGACATGGCATCGACACAAATAGAGGAGCT
Found at i:32525433 original size:17 final size:16
Alignment explanation
Indices: 32525411--32525442 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
32525401 TGAGTGGGAG
32525411 GGGTAAGGGTAGAGGAA
1 GGGTAAGGGTA-AGGAA
32525428 GGGTAAGGGTAAGGA
1 GGGTAAGGGTAAGGA
32525443 TAGGTGACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.34, C:0.00, G:0.53, T:0.12
Consensus pattern (16 bp):
GGGTAAGGGTAAGGAA
Found at i:32529031 original size:16 final size:16
Alignment explanation
Indices: 32529010--32529040 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
32529000 ATGACCTCGA
32529010 TAAACCTCATTTCATG
1 TAAACCTCATTTCATG
32529026 TAAACCTCATTTCAT
1 TAAACCTCATTTCAT
32529041 CGATCTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (16 bp):
TAAACCTCATTTCATG
Found at i:32542935 original size:27 final size:27
Alignment explanation
Indices: 32542905--32543011 Score: 128
Period size: 27 Copynumber: 3.9 Consensus size: 27
32542895 GGCTGCAAGA
* *
32542905 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
32542932 ACAGATAATCGTGGCAGAACCACCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
32542959 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
* *
32542987 -CAGATAATTTTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
32543012 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
26 1 0.01
27 53 0.76
28 16 0.23
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.18
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:32544456 original size:24 final size:24
Alignment explanation
Indices: 32544429--32544479 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
32544419 CTAGATTTCC
**
32544429 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
32544453 TCCCTTATCAATTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
32544477 TCC
1 TCC
32544480 TGACAGACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.37, G:0.02, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:32548136 original size:27 final size:26
Alignment explanation
Indices: 32548074--32548185 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
32548064 AGCATGGCTG
* * *
32548074 CCAGAACAAATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
32548100 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
32548128 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
32548155 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
32548182 CCAG
1 CCAG
32548186 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.71
28 16 0.21
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:32548168 original size:54 final size:54
Alignment explanation
Indices: 32548074--32548185 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
32548064 AGCATGGCTG
*
32548074 CCAGAACAAATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
* * * * *
32548128 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAAATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
32548182 CCAG
1 CCAG
32548186 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.16
Consensus pattern (54 bp):
CCAGAACAAATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAACCA
Found at i:32549402 original size:24 final size:24
Alignment explanation
Indices: 32549375--32549425 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 24
32549365 CTAGATTTCC
32549375 TCCCTTATCTG-CTCCTAAATCCTA
1 TCCCTTATC-GACTCCTAAATCCTA
32549399 TCCCTTATCGACTCCTAAATCCTA
1 TCCCTTATCGACTCCTAAATCCTA
32549423 TCC
1 TCC
32549426 TGATAGAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.22, C:0.39, G:0.04, T:0.35
Consensus pattern (24 bp):
TCCCTTATCGACTCCTAAATCCTA
Found at i:32551828 original size:17 final size:18
Alignment explanation
Indices: 32551795--32551829 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32551785 AAGAATGAGT
32551795 AAAAAAAGAAAAGAACAG
1 AAAAAAAGAAAAGAACAG
*
32551813 AAAAAGAGAAAA-AACAG
1 AAAAAAAGAAAAGAACAG
32551830 TTTAGGGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.77, C:0.06, G:0.17, T:0.00
Consensus pattern (18 bp):
AAAAAAAGAAAAGAACAG
Found at i:32552105 original size:19 final size:19
Alignment explanation
Indices: 32552083--32552121 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32552073 AGAGAGATTG
32552083 ATTCTTAGTGGAAAGATAA
1 ATTCTTAGTGGAAAGATAA
32552102 ATTCTTAGTGGAAAGATAA
1 ATTCTTAGTGGAAAGATAA
32552121 A
1 A
32552122 CTAAGTACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (19 bp):
ATTCTTAGTGGAAAGATAA
Found at i:32556624 original size:43 final size:43
Alignment explanation
Indices: 32556563--32556752 Score: 192
Period size: 43 Copynumber: 4.4 Consensus size: 43
32556553 GTTATCGAGA
*
32556563 TGTGATTACATGTAAGACCCTGTGTGGGAAAGTGGCATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGAAAGTGGCATCGTAT
*
32556606 TGTGATTACATGTAAGACCCTGTGTGGGACAA-TGGCATTGTAT
1 TGTGATTACATGTAAGACCCTGTGTGGGA-AAGTGGCATCGTAT
* * * * * *
32556649 TGTGATTACGTGTAAGACCATGTGTGAGACATTGGCATCGTTAA
1 TGTGATTACATGTAAGACCCTGTGTGGGAAAGTGGCATCG-TAT
* * * *
32556693 T-CGACTT-CGTGTAAGATCCTGTGTGGG-ACGTGGCATCG-AT
1 TGTGA-TTACATGTAAGACCCTGTGTGGGAAAGTGGCATCGTAT
*
32556733 ATGTGATAACATGTAAGACC
1 -TGTGATTACATGTAAGACC
32556753 ATATCTAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 15
0.79 0.12 0.10
Matches are distributed among these distances:
40 1 0.01
41 2 0.02
42 20 0.16
43 92 0.75
44 7 0.06
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCCTGTGTGGGAAAGTGGCATCGTAT
Found at i:32558937 original size:27 final size:27
Alignment explanation
Indices: 32558864--32558973 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
32558854 AGCATGGCTG
* *
32558864 CCAGAACAGATAA-TGT-G-ACAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
32558888 CCAGATATAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
32558916 CCAGAACAGA-AATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
32558943 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
32558970 CCAG
1 CCAG
32558974 GATGCTTCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
24 5 0.07
25 7 0.10
26 5 0.07
27 42 0.58
28 13 0.18
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:32560403 original size:24 final size:24
Alignment explanation
Indices: 32560366--32560435 Score: 122
Period size: 24 Copynumber: 2.9 Consensus size: 24
32560356 ACCTCTTGTT
*
32560366 CCTTGATCAGCTCCTAAATCCTATC
1 CCTT-ATCAACTCCTAAATCCTATC
32560391 CCTTATCAACTCCTAAATCCTATC
1 CCTTATCAACTCCTAAATCCTATC
32560415 CCTTATCAACTCCTAAATCCT
1 CCTTATCAACTCCTAAATCCT
32560436 CTCCTGACAG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
24 40 0.91
25 4 0.09
ACGTcount: A:0.27, C:0.37, G:0.03, T:0.33
Consensus pattern (24 bp):
CCTTATCAACTCCTAAATCCTATC
Found at i:32566688 original size:27 final size:27
Alignment explanation
Indices: 32566650--32566761 Score: 131
Period size: 27 Copynumber: 4.1 Consensus size: 27
32566640 AGCATGGCTG
* *
32566650 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
32566676 CCAGATAGAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
32566704 CCAGA-ACAGAAATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
32566731 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
32566758 CCAG
1 CCAG
32566762 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
26 6 0.08
27 51 0.69
28 17 0.23
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.15
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:32566743 original size:54 final size:54
Alignment explanation
Indices: 32566650--32566761 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
32566640 AGCATGGCTG
* * *
32566650 CCAGAACAGATAATGTGACAGAGTCACCAGATAGAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
32566704 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
32566758 CCAG
1 CCAG
32566762 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.22, G:0.25, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:32568205 original size:24 final size:24
Alignment explanation
Indices: 32568178--32568248 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
32568168 CTAGATTTCC
**
32568178 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
32568202 TCCCTTATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
32568226 TCCCTTATCAACTCTTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
32568249 CTCCTGGCAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.25, C:0.37, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:32570908 original size:43 final size:42
Alignment explanation
Indices: 32570860--32570946 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 42
32570850 AAAATCTTCG
*
32570860 AGAATCTAATAAGATACTATTGCTGACATCATCCTTGCTATAT
1 AGAATCTAATAAGATACTATTGCTGACAACATCCTTGCT-TAT
*
32570903 AGAATCTAATAAGATACTGTTGCTGACAACATCCTTGCTTAT
1 AGAATCTAATAAGATACTATTGCTGACAACATCCTTGCTTAT
32570945 AG
1 AG
32570947 CCTACGTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.34, C:0.18, G:0.14, T:0.33
Consensus pattern (42 bp):
AGAATCTAATAAGATACTATTGCTGACAACATCCTTGCTTAT
Found at i:32571074 original size:21 final size:21
Alignment explanation
Indices: 32571032--32571076 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32571022 CGTGTTGCAA
* * *
32571032 CACAGACATTGCTTATCGTGC
1 CACACACATTGCATATCATGC
*
32571053 CACACACATTGCATGTCATGC
1 CACACACATTGCATATCATGC
32571074 CAC
1 CAC
32571077 GCAAAGCATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.27, C:0.33, G:0.16, T:0.24
Consensus pattern (21 bp):
CACACACATTGCATATCATGC
Found at i:32572807 original size:20 final size:18
Alignment explanation
Indices: 32572782--32572834 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 18
32572772 TGTGGGCTTA
32572782 ATGGGCCAAAAATCGGGTTC
1 ATGGGCC-AAAA-CGGGTTC
32572802 ATGGGCC--AACGGGTTC
1 ATGGGCCAAAACGGGTTC
32572818 ATGGGCC--AACGGGTTC
1 ATGGGCCAAAACGGGTTC
32572834 A
1 A
32572835 ATTTGGTAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
16 24 0.73
17 2 0.06
20 7 0.21
ACGTcount: A:0.25, C:0.23, G:0.34, T:0.19
Consensus pattern (18 bp):
ATGGGCCAAAACGGGTTC
Found at i:32572816 original size:16 final size:16
Alignment explanation
Indices: 32572795--32572834 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
32572785 GGCCAAAAAT
32572795 CGGGTTCATGGGCCAA
1 CGGGTTCATGGGCCAA
32572811 CGGGTTCATGGGCCAA
1 CGGGTTCATGGGCCAA
32572827 CGGGTTCA
1 CGGGTTCA
32572835 ATTTGGTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.17, C:0.25, G:0.38, T:0.20
Consensus pattern (16 bp):
CGGGTTCATGGGCCAA
Found at i:32573148 original size:27 final size:28
Alignment explanation
Indices: 32573093--32573202 Score: 104
Period size: 27 Copynumber: 4.0 Consensus size: 28
32573083 AAGCGTCCTA
* * *
32573093 GTGGCTATGCCACAAATTATCTGATCTG
1 GTGGCTCTGCCACATATTATCTGTTCTG
32573121 GTGGC-CTTGCCACATA-TATCTGTTCTG
1 GTGGCTC-TGCCACATATTATCTGTTCTG
* *
32573148 GTGGTTCTGCCA-AGATTATCTGTATCTG
1 GTGGCTCTGCCACATATTATCTGT-TCTG
* *
32573176 GTGACTCTGTCAC--ATTATCTGTTCTG
1 GTGGCTCTGCCACATATTATCTGTTCTG
32573202 G
1 G
32573203 CAGCCATGCT
Statistics
Matches: 69, Mismatches: 8, Indels: 12
0.78 0.09 0.13
Matches are distributed among these distances:
26 7 0.10
27 35 0.51
28 27 0.39
ACGTcount: A:0.18, C:0.22, G:0.23, T:0.37
Consensus pattern (28 bp):
GTGGCTCTGCCACATATTATCTGTTCTG
Found at i:32582980 original size:21 final size:22
Alignment explanation
Indices: 32582947--32582990 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
32582937 ATAAGATAAT
*
32582947 AAACATATTTAA-TAATACATGA
1 AAACATATGTAATTAATA-ATGA
32582969 AAACATA-GTAATTAATAATGA
1 AAACATATGTAATTAATAATGA
32582990 A
1 A
32582991 TTTTGAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (22 bp):
AAACATATGTAATTAATAATGA
Found at i:32583168 original size:16 final size:16
Alignment explanation
Indices: 32583096--32583170 Score: 61
Period size: 14 Copynumber: 4.9 Consensus size: 16
32583086 AATATCAATT
32583096 TAATATG-AA-AATAA
1 TAATATGAAATAATAA
*
32583110 TAATGTG-AATAATAA
1 TAATATGAAATAATAA
* *
32583125 TATACATGAAAAAAT-A
1 TA-ATATGAAATAATAA
* *
32583141 T-ATATTAGATAATAA
1 TAATATGAAATAATAA
32583156 TAATATGAAATAATA
1 TAATATGAAATAATA
32583171 TATTGTTAAA
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
14 16 0.35
15 9 0.20
16 16 0.35
17 5 0.11
ACGTcount: A:0.59, C:0.01, G:0.08, T:0.32
Consensus pattern (16 bp):
TAATATGAAATAATAA
Found at i:32583171 original size:28 final size:27
Alignment explanation
Indices: 32583096--32583210 Score: 89
Period size: 23 Copynumber: 4.2 Consensus size: 27
32583086 AATATCAATT
32583096 TAATATGAAAATAATA-ATGTGAATAATAA
1 TAATATGAAAATAATATAT-TG-AT-ATAA
* *
32583125 TATACATGAAAAAATATATATTAGATAATAA
1 TA-ATATGAAAATA-ATATATT-GAT-ATAA
32583156 TAATATG-AAATAATATATTG-T-TAA
1 TAATATGAAAATAATATATTGATATAA
* *
32583180 -AATAT-AAAATAATATAATAATATAA
1 TAATATGAAAATAATATATTGATATAA
32583205 TAATAT
1 TAATAT
32583211 ATAAATATTA
Statistics
Matches: 72, Mismatches: 6, Indels: 19
0.74 0.06 0.20
Matches are distributed among these distances:
23 16 0.22
24 4 0.06
25 3 0.04
26 6 0.08
27 1 0.01
28 7 0.10
29 6 0.08
30 13 0.18
31 13 0.18
32 3 0.04
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (27 bp):
TAATATGAAAATAATATATTGATATAA
Found at i:32583171 original size:30 final size:29
Alignment explanation
Indices: 32583096--32583210 Score: 88
Period size: 30 Copynumber: 4.2 Consensus size: 29
32583086 AATATCAATT
*
32583096 TAATATGAAAATAATA-ATGTGAATAATAA
1 TAATATG-AAATAATATATATGAATAATAA
* * *
32583125 TATACATGAAAAAATATATATTAGATAATAA
1 TA-ATATGAAATAATATATATGA-ATAATAA
32583156 TAATATGAAATAATATAT-TG--T--TAA
1 TAATATGAAATAATATATATGAATAATAA
*
32583180 -AATATAAAATAATATA-AT-AAT-ATAA
1 TAATATGAAATAATATATATGAATAATAA
32583205 TAATAT
1 TAATAT
32583211 ATAAATATTA
Statistics
Matches: 70, Mismatches: 8, Indels: 19
0.72 0.08 0.20
Matches are distributed among these distances:
23 16 0.23
24 4 0.06
25 3 0.04
26 6 0.09
29 10 0.14
30 22 0.31
31 9 0.13
ACGTcount: A:0.58, C:0.01, G:0.06, T:0.35
Consensus pattern (29 bp):
TAATATGAAATAATATATATGAATAATAA
Found at i:32583196 original size:5 final size:5
Alignment explanation
Indices: 32583180--32583359 Score: 66
Period size: 5 Copynumber: 34.4 Consensus size: 5
32583170 ATATTGTTAA
* * * * *
32583180 AATAT AAAAT AATAT -A-AT AATAT AATA- ATATAT AAATAT TATGT GATAAA
1 AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT -AATAT AATAT AAT-AT
** *
32583230 AATAT AATAT AATAAAT AATGAGT AATGAT -ATAT GTTAA AATAT -ATATT
1 AATAT AATAT AAT--AT AAT-A-T AAT-AT AATAT AATAT AATAT AATA-T
* * * * *
32583279 AATAT GATAAA AATAT AATAA AATAT AATAA AATAT AATAA AATAT AATAT
1 AATAT AAT-AT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT
*
32583330 AAAATAT AATACAT AAAAT AATAT -ATAT AA
1 --AATAT AAT--AT AATAT AATAT AATAT AA
32583360 AATTTAAAAT
Statistics
Matches: 130, Mismatches: 27, Indels: 36
0.67 0.14 0.19
Matches are distributed among these distances:
3 2 0.02
4 12 0.09
5 81 0.62
6 14 0.11
7 21 0.16
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.34
Consensus pattern (5 bp):
AATAT
Found at i:32583207 original size:49 final size:51
Alignment explanation
Indices: 32583135--32583318 Score: 125
Period size: 50 Copynumber: 3.5 Consensus size: 51
32583125 TATACATGAA
* *
32583135 AAAAT-ATATATTAGATAATAATAATATGAAATAATA-TAT-TG-TTAAAATAT
1 AAAATAATATAATA-ATAATAATAATAT-AAA-AATATTATGTGATAAAAATAT
*
32583185 AAAATAATATAATAAT-ATAATAATATATAAATATTATGTGATAAAAATAT
1 AAAATAATATAATAATAATAATAATATAAAAATATTATGTGATAAAAATAT
* * *
32583235 AATATAATA-AATAATGAGTAATGATATATGTTAAAATATATATTAATATGATAAAAATAT
1 AAAATAATATAATAAT-AATAAT-A-ATA---T-AAA-A-ATATT-ATGTGATAAAAATAT
32583295 AATAA-AATATAATAA-AAT-ATAATA
1 AA-AATAATATAATAATAATAATAATA
32583319 AAATATAATA
Statistics
Matches: 108, Mismatches: 9, Indels: 28
0.74 0.06 0.19
Matches are distributed among these distances:
47 4 0.04
48 5 0.05
49 18 0.17
50 23 0.21
51 11 0.10
52 1 0.01
53 3 0.03
56 4 0.04
57 3 0.03
58 3 0.03
59 7 0.06
60 20 0.19
61 6 0.06
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (51 bp):
AAAATAATATAATAATAATAATAATATAAAAATATTATGTGATAAAAATAT
Found at i:32583244 original size:120 final size:117
Alignment explanation
Indices: 32583118--32583336 Score: 250
Period size: 120 Copynumber: 1.8 Consensus size: 117
32583108 AATAATGTGA
* **
32583118 ATAATAATATACATGA-AAAAATATATATT-AGATA-ATAATAATATGA-AATAATATATTGTTA
1 ATAATAA-ATA-ATGAGAAAAATATATATTAAAATATATAATAATATGATAA-AA-ATA-TAATA
*
32583179 AAATATAA-AATAATATAATAATATAATAATATATAAATATTATGTGATAAAAATATAAT
61 AAATATAATAA-AATATAATAAAAT-ATAATATA-AAATATTATGTGATAAAAATATAAT
** * *
32583238 ATAATAAATAATGAGTAATGATATATGTTAAAATATATATTAATATGATAAAAATATAATAAAAT
1 ATAATAAATAATGAG-AAAAATATATATTAAAATATATAATAATATGATAAAAATATAATAAAAT
32583303 ATAATAAAATATAATAAAATATAATATAAAATAT
65 ATAATAAAATATAATAAAATATAATATAAAATAT
32583337 AATACATAAA
Statistics
Matches: 85, Mismatches: 8, Indels: 14
0.79 0.07 0.13
Matches are distributed among these distances:
118 10 0.12
119 11 0.13
120 40 0.47
121 9 0.11
122 13 0.15
123 2 0.02
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (117 bp):
ATAATAAATAATGAGAAAAATATATATTAAAATATATAATAATATGATAAAAATATAATAAAATA
TAATAAAATATAATAAAATATAATATAAAATATTATGTGATAAAAATATAAT
Found at i:32583301 original size:10 final size:10
Alignment explanation
Indices: 32583266--32583362 Score: 92
Period size: 10 Copynumber: 9.6 Consensus size: 10
32583256 TGATATATGT
32583266 TAAAATAT-A
1 TAAAATATAA
* *
32583275 TATTAATATGA
1 TA-AAATATAA
32583286 TAAAAATATAA
1 T-AAAATATAA
32583297 TAAAATATAA
1 TAAAATATAA
32583307 TAAAATATAA
1 TAAAATATAA
32583317 TAAAATATAATA
1 TAAAATAT-A-A
32583329 TAAAATATAA
1 TAAAATATAA
* *
32583339 T-ACATAAAA
1 TAAAATATAA
*
32583348 TAATATAT-A
1 TAAAATATAA
32583357 TAAAAT
1 TAAAAT
32583363 TTAAAATAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 12
0.79 0.09 0.13
Matches are distributed among these distances:
9 15 0.20
10 38 0.51
11 11 0.15
12 10 0.14
ACGTcount: A:0.65, C:0.01, G:0.01, T:0.33
Consensus pattern (10 bp):
TAAAATATAA
Found at i:32583371 original size:12 final size:12
Alignment explanation
Indices: 32583285--32583372 Score: 69
Period size: 10 Copynumber: 7.4 Consensus size: 12
32583275 TATTAATATG
*
32583285 ATAAAA-ATATA
1 ATAAAATATAAA
32583296 ATAAAATAT--A
1 ATAAAATATAAA
32583306 ATAAAATAT--A
1 ATAAAATATAAA
*
32583316 ATAAAATATAAT
1 ATAAAATATAAA
32583328 ATAAAATATAATA
1 ATAAAATATAA-A
*
32583341 CATAAAATAATATAT
1 -ATAAAAT-ATA-AA
*
32583356 ATAAAATTTAAA
1 ATAAAATATAAA
32583368 ATAAA
1 ATAAA
32583373 TAAGTTATAA
Statistics
Matches: 65, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
10 20 0.31
11 6 0.09
12 19 0.29
13 2 0.03
14 14 0.22
15 3 0.05
16 1 0.02
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (12 bp):
ATAAAATATAAA
Found at i:32593704 original size:45 final size:45
Alignment explanation
Indices: 32593569--32593828 Score: 332
Period size: 45 Copynumber: 5.9 Consensus size: 45
32593559 TTTCATCAAA
* * * * ** *
32593569 TCACCGGCATT-CAGTCTGCTAGGTTTAAAAACCCGAAT-TCAT-
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
* *
32593611 TCACCGGCATT-TATCCTGCTAGGCTC-AAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
* * *
32593654 TCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGACTATTATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
32593699 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
* * * * *
32593744 TCACCGACATTATAGCCTTCTAGGGTCAAAGGCCCAAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
32593789 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
32593829 GTACTGTACA
Statistics
Matches: 188, Mismatches: 26, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
41 9 0.05
42 23 0.12
43 11 0.06
44 14 0.07
45 131 0.70
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATATTATC
Found at i:32612447 original size:29 final size:27
Alignment explanation
Indices: 32612409--32612463 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
32612399 TAATGCTGAT
*
32612409 TAAATTGAATGTGAATATATGATTTTATTG
1 TAAATTGAAT-T-AATATAT-ATGTTATTG
32612439 TAAA-TGAATTAATATATATGTTATT
1 TAAATTGAATTAATATATATGTTATT
32612464 CTACAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 7 0.29
27 7 0.29
28 1 0.04
29 5 0.21
30 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (27 bp):
TAAATTGAATTAATATATATGTTATTG
Found at i:32613516 original size:20 final size:21
Alignment explanation
Indices: 32613486--32613533 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
32613476 TAAGTTAAAG
*
32613486 AATGTAAATGC-AATGGAAAAT
1 AATG-AAATGCAAATGAAAAAT
32613507 AATGAAATGCAAATGAAAAAT
1 AATGAAATGCAAATGAAAAAT
32613528 AA-GAAA
1 AATGAAA
32613534 ATTTAAAAGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.60, C:0.04, G:0.17, T:0.19
Consensus pattern (21 bp):
AATGAAATGCAAATGAAAAAT
Found at i:32614508 original size:30 final size:31
Alignment explanation
Indices: 32614484--32614542 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
32614474 GTAAATACTC
**
32614484 AAAATTTGAAGGGTTAA-AGTGTAAATATGA
1 AAAATTTGAAGGACTAATAGTGTAAATATGA
32614514 AAAATTTGAAGGACTAATAGTGTAAATAT
1 AAAATTTGAAGGACTAATAGTGTAAATAT
32614543 TTTAAAGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 15 0.58
31 11 0.42
ACGTcount: A:0.47, C:0.02, G:0.20, T:0.31
Consensus pattern (31 bp):
AAAATTTGAAGGACTAATAGTGTAAATATGA
Found at i:32614814 original size:31 final size:30
Alignment explanation
Indices: 32614739--32614814 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 30
32614729 ATGATGCTAG
* *
32614739 AGATATTTTGATATTTTATAATTATTTAATT
1 AGATATTTT-TTATTTTATAATTATTTAATA
** *
32614770 AGATAAATATTATTTTATTAA-TATTTTAATA
1 AGATATTTTTTATTTTA-TAATTA-TTTAATA
32614801 AGATATTTTTTATT
1 AGATATTTTTTATT
32614815 ATTTTTTTAT
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
30 9 0.26
31 26 0.74
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (30 bp):
AGATATTTTTTATTTTATAATTATTTAATA
Found at i:32616701 original size:46 final size:46
Alignment explanation
Indices: 32616649--32616806 Score: 289
Period size: 46 Copynumber: 3.4 Consensus size: 46
32616639 AGTGTGCTCT
*
32616649 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATACGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
32616695 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGCCAAC
1 CTGATACGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
32616741 CTGATACGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATACGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
32616787 CTGATACGAAATGTGTAAGA
1 CTGATACGAAATGTGTAAGA
32616807 AATGTGTAAG
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 109 1.00
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.23
Consensus pattern (46 bp):
CTGATACGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:32616816 original size:57 final size:57
Alignment explanation
Indices: 32616748--32616863 Score: 205
Period size: 57 Copynumber: 2.0 Consensus size: 57
32616738 AACCTGATAC
* *
32616748 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATACGAAATGTGTAA
1 GAAATGTGTAAGACCATGGTTGAAAGAAACCATGACAACCTGATACGAAATGTGTAA
*
32616805 GAAATGTGTAAGACCATGGTTGAAAGAAACCATGACAACCTGATATGAAATGTGTAA
1 GAAATGTGTAAGACCATGGTTGAAAGAAACCATGACAACCTGATACGAAATGTGTAA
32616862 GA
1 GA
32616864 CCATGGTTGA
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (57 bp):
GAAATGTGTAAGACCATGGTTGAAAGAAACCATGACAACCTGATACGAAATGTGTAA
Found at i:32616872 original size:46 final size:46
Alignment explanation
Indices: 32616805--32617025 Score: 300
Period size: 46 Copynumber: 4.8 Consensus size: 46
32616795 AAATGTGTAA
* * * *
32616805 GAAATGTGTAAGACCATGGTTGAAAGAAACCATGACAACCTGATAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
*
32616851 GAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
* *
32616897 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTGATAT
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
* * **
32616943 GAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGGCA-
1 GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
* * *
32616988 GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 G-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
32617026 TCATGGCAAA
Statistics
Matches: 160, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.01
46 159 0.99
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
GAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACGTGATAT
Found at i:32616881 original size:103 final size:103
Alignment explanation
Indices: 32616702--32616902 Score: 357
Period size: 103 Copynumber: 2.0 Consensus size: 103
32616692 AACCTGATAT
* *
32616702 GAAATGTGTAAGACCATGGTTGAAAGATACCATGCCAACCTGATACGAAATGTGTAAGACCATGG
1 GAAATGTGTAAGACCATGGTTGAAAGAAACCATGACAACCTGATACGAAATGTGTAAGACCATGG
32616767 TTGAAAGATACCATGGCAACCTGATACGAAATGTGTAA
66 TTGAAAGATACCATGGCAACCTGATACGAAATGTGTAA
*
32616805 GAAATGTGTAAGACCATGGTTGAAAGAAACCATGACAACCTGATATGAAATGTGTAAGACCATGG
1 GAAATGTGTAAGACCATGGTTGAAAGAAACCATGACAACCTGATACGAAATGTGTAAGACCATGG
* *
32616870 TTGAAAGATACCATGGCAACGTGATATGAAATG
66 TTGAAAGATACCATGGCAACCTGATACGAAATG
32616903 AATAAGACCA
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 93 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (103 bp):
GAAATGTGTAAGACCATGGTTGAAAGAAACCATGACAACCTGATACGAAATGTGTAAGACCATGG
TTGAAAGATACCATGGCAACCTGATACGAAATGTGTAA
Done.