Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1226
Parameters: 2 7 7 80 10 50 1000
Length:  150191

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2814--2851
20
1.9
20
88
0
58
44
10
5
39
1.61
4638--4663
5
5.2
5
100
0
52
19
0
0
80
0.71
11222--11277
29
1.9
29
89
7
87
32
25
3
39
1.73
18200--18448
50
4.8
50
85
4
284
20
29
24
26
1.99
18199--18448
100
2.4
104
88
6
357
20
29
24
26
1.99
18543--18574
13
2.5
13
94
0
55
56
12
0
31
1.37
18786--18842
30
1.9
29
85
3
78
31
24
1
42
1.65
28142--28173
2
16.0
2
100
0
64
50
0
50
0
1.00
38221--38270
15
3.3
15
80
0
55
26
16
40
18
1.90
40463--40504
6
7.0
6
94
0
66
0
16
38
45
1.48
42455--42490
18
2.0
18
88
0
54
22
5
0
72
1.05
45486--45529
22
2.0
23
86
4
63
63
2
2
31
1.19
55379--55405
13
2.1
13
100
0
54
51
0
0
48
1.00
60477--60528
21
2.6
21
72
6
54
65
1
3
28
1.21
61641--61666
12
2.2
12
100
0
52
53
0
0
46
1.00
63772--63948
46
3.9
44
78
11
194
29
28
19
22
1.98
63780--63948
93
1.8
93
90
2
277
29
28
19
21
1.98
65844--65886
18
2.4
18
92
7
70
55
0
0
44
0.99
68059--68255
41
4.8
41
89
2
288
28
20
22
27
1.99
68059--68309
123
2.0
124
80
5
285
29
19
23
27
1.98
68486--68569
33
2.4
36
86
7
111
28
11
25
34
1.91
75520--75608
41
2.2
41
80
10
101
22
2
10
65
1.34
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91173--91254
41
2.0
41
87
0
119
47
13
9
29
1.75
100801--100842
16
2.7
16
77
3
50
69
0
0
30
0.89
101287--101346
27
2.2
27
82
8
77
28
0
0
71
0.86
105301--105327
14
1.9
14
100
0
54
22
0
0
77
0.76
105748--105791
23
1.9
23
90
0
70
59
9
6
25
1.53
114140--114220
15
5.4
15
71
11
76
44
8
22
24
1.81
114134--114226
30
3.1
30
95
0
159
43
7
23
25
1.80
115472--115497
2
13.0
2
100
0
52
50
0
0
50
1.00
126781--127334
281
2.0
279
83
4
706
37
19
12
31
1.88
127623--127681
20
2.9
19
78
9
55
54
10
6
28
1.59
128215--128254
20
2.0
20
100
0
80
50
0
5
45
1.23
132849--133025
50
3.5
50
85
2
239
36
16
20
26
1.94
133003--133173
31
5.5
31
91
0
261
29
18
26
25
1.98
134516--134571
29
1.9
30
85
7
80
69
1
0
28
0.98
138432--138498
34
2.0
34
90
0
107
28
14
11
44
1.81

Tables:   1

The End!