Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold541
Parameters: 2 7 7 80 10 50 1000
Length:  143301

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
843--1022
77
2.3
77
87
2
245
26
21
26
26
1.99
831--1050
40
5.7
38
81
10
214
25
22
25
26
2.00
3413--3482
15
4.7
15
78
8
81
11
18
12
57
1.65
3404--3483
29
2.7
29
81
9
90
11
17
16
55
1.70
9295--9393
43
2.3
43
88
8
141
23
19
25
32
1.97
13392--13503
58
1.9
59
85
1
154
50
3
19
26
1.64
17639--17695
22
2.6
22
100
0
114
21
29
35
14
1.92
19648--19812
46
3.5
47
78
9
153
25
27
17
29
1.98
31552--31598
17
2.8
17
73
20
53
21
8
8
61
1.51
35807--35858
26
2.0
27
96
3
97
34
7
9
48
1.65
39824--39979
42
3.7
42
78
8
156
32
17
21
28
1.96
45557--45662
32
3.3
32
85
6
133
44
8
8
38
1.65
47796--47842
13
3.8
13
77
5
53
63
0
2
34
1.06
49436--49471
18
1.9
18
94
5
63
5
16
16
61
1.53
50668--50701
16
2.0
18
88
11
54
47
11
0
41
1.40
53320--53400
34
2.4
35
91
4
130
44
20
7
27
1.78
62906--63086
40
4.6
40
88
3
267
23
23
28
23
1.99
67005--67311
47
6.6
46
70
13
216
23
29
20
27
1.99
71388--71611
40
5.8
40
85
9
290
25
27
22
24
2.00
73737--73811
37
2.1
37
92
2
125
30
20
12
37
1.89
79496--79726
40
5.8
40
92
2
349
23
29
24
23
1.99
82643--82692
18
2.6
20
87
6
77
2
22
0
76
0.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82646--82692
20
2.5
20
89
6
71
2
21
0
76
0.89
82636--82695
18
3.5
17
80
17
70
5
23
0
71
1.05
82659--82698
20
2.0
20
85
0
53
7
25
0
67
1.16
82633--82702
18
4.0
18
80
10
58
5
24
0
70
1.09
82633--82702
34
2.0
33
81
13
79
5
24
0
70
1.09
95639--95781
57
2.5
59
81
6
168
29
20
20
29
1.98
106197--106228
15
2.1
15
100
0
64
40
6
21
31
1.78
111748--112109
46
7.6
47
75
10
192
24
29
18
27
1.98
111899--112158
46
5.6
45
77
15
196
24
30
17
28
1.97
114264--114291
13
2.2
13
100
0
56
53
32
0
14
1.41
114869--114907
16
2.5
16
91
4
62
41
20
12
25
1.88
114813--114950
72
1.9
72
87
0
204
39
23
11
24
1.88
115361--116671
648
2.0
648
99
0
2595
38
19
8
34
1.81
118491--118515
9
2.8
9
100
0
50
52
0
12
36
1.39
124268--124365
33
2.9
33
84
7
108
36
22
10
30
1.87
124580--124735
41
3.8
41
89
6
235
28
22
20
28
1.98
125216--125263
24
2.1
23
85
11
64
31
14
0
54
1.41
131932--131995
32
2.0
31
90
3
101
39
23
9
28
1.86
132208--132362
41
3.8
41
89
7
235
27
22
20
29
1.99
139891--139988
42
2.4
41
88
10
139
27
24
20
27
1.99

Tables:   1

The End!