genome.fa.s616.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold392_ERROPOS132712
Parameters: 2 7 7 80 10 50 1000
Length:  132712

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6790--7012	40	5.7	40	86	7	269	26	27	21	24	1.99
6790--7012	79	2.8	79	84	8	285	26	27	21	24	1.99
9618--9824	27	7.6	27	94	3	216	30	28	14	26	1.94
9618--9824	55	3.8	55	96	0	369	30	28	14	26	1.94
14138--14339	62	3.2	60	73	18	162	51	3	3	40	1.39
14234--14282	20	2.7	18	77	22	57	51	4	2	42	1.32
14198--14342	68	2.1	71	80	12	158	52	3	4	40	1.37
26621--26792	93	1.8	93	96	0	317	27	29	21	20	1.98
26614--26789	46	3.8	46	79	12	216	28	29	21	20	1.98
34172--34343	93	1.8	93	96	0	317	27	29	21	20	1.98
34165--34340	46	3.8	46	79	12	216	28	29	21	20	1.98
37570--37693	37	3.1	38	78	12	135	22	20	28	28	1.99
37565--37723	83	1.9	83	91	5	259	20	22	28	27	1.99
45009--45136	46	2.8	46	92	0	211	19	21	29	29	1.97
49653--49783	42	3.0	43	75	12	119	34	25	16	22	1.95
52536--52571	18	2.0	18	100	0	72	55	5	16	22	1.62
54444--54550	52	2.1	52	94	0	187	27	9	18	44	1.80
58836--59015	62	2.9	62	78	8	179	41	15	4	38	1.67
59246--59292	24	1.9	25	82	4	60	46	2	6	44	1.40
62205--62243	19	2.1	19	85	4	53	53	25	2	17	1.56
64886--64923	20	1.9	20	100	0	76	23	42	13	21	1.88
66466--66520	26	2.1	27	93	3	94	27	21	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
72969--73059	42	2.2	42	89	0	146	35	37	2	25	1.68
87620--87997	190	2.0	190	97	0	711	32	15	20	31	1.94
90879--90954	24	3.3	24	62	23	63	23	17	18	40	1.91
90863--90956	45	2.1	45	100	0	188	26	15	19	38	1.92
101586--101613	14	2.0	14	100	0	56	35	28	14	21	1.92
103021--103073	25	2.1	25	100	0	106	35	16	18	28	1.93
105196--105326	65	2.0	65	95	0	235	24	15	17	42	1.88
106422--106552	49	2.7	49	78	7	149	21	27	22	29	1.99
107377--107427	20	2.7	18	82	14	59	37	21	0	41	1.54
110776--110824	21	2.4	21	86	3	64	28	18	40	12	1.86
112521--112742	40	5.6	39	88	3	275	25	29	22	22	1.99
112521--112705	79	2.3	80	90	0	282	25	28	23	22	1.99
114841--114887	15	3.1	15	84	6	51	70	2	4	23	1.16
118838--119058	40	5.7	39	84	10	265	24	21	28	25	1.99
126844--127056	40	5.3	40	94	1	338	24	20	27	27	1.99

Tables:   1

The End!