genome.fa.s617.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2535
Parameters: 2 7 7 80 10 50 1000
Length:  111972

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9042--9099	30	1.9	30	89	0	89	41	3	24	31	1.71
9311--9342	13	2.5	13	94	0	55	31	0	12	56	1.37
9437--9678	50	4.7	50	86	4	297	26	24	29	19	1.99
9437--9686	100	2.4	103	88	6	364	26	24	29	20	1.99
12886--13102	108	2.0	108	96	0	398	41	13	13	32	1.83
17770--17795	2	13.0	2	100	0	52	50	0	50	0	1.00
22452--22498	21	2.2	22	92	3	78	21	19	38	21	1.94
25148--25476	130	2.5	130	86	1	444	33	21	18	26	1.97
25833--25870	17	2.2	17	90	0	58	57	2	7	31	1.41
33286--33396	47	2.4	47	80	6	127	36	22	14	26	1.92
36514--36571	9	6.6	9	75	18	50	60	1	6	31	1.33
36514--36546	3	11.0	3	93	0	57	63	0	3	33	1.10
36504--36542	12	3.2	12	88	0	51	61	0	7	30	1.24
36762--36822	18	3.2	18	74	17	61	59	1	1	37	1.17
36748--36822	39	2.0	39	87	10	111	60	2	1	36	1.20
36744--36817	25	3.0	24	81	15	71	60	2	1	35	1.19
36748--36822	23	3.2	23	76	22	75	60	2	1	36	1.20
37009--37065	24	2.4	24	81	0	69	61	8	3	26	1.42
42389--42446	30	1.9	30	89	0	89	41	3	24	31	1.71
42658--42689	13	2.5	13	94	0	55	31	0	12	56	1.37
42784--43025	50	4.7	50	86	4	297	26	24	29	19	1.99
42784--43033	100	2.4	103	88	6	364	26	24	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50638--50668	16	1.9	16	93	0	53	67	6	16	9	1.39
52835--52917	31	2.7	30	70	10	78	43	18	18	20	1.88
60967--61056	45	2.0	44	84	2	117	45	20	8	25	1.79
62314--62369	19	3.1	19	73	19	57	32	0	1	66	1.03
62415--62459	20	2.2	20	84	0	54	37	2	0	60	1.09
69043--69230	59	3.2	59	66	11	150	41	3	3	51	1.35
69032--69320	119	2.4	120	93	2	492	43	2	4	50	1.34
69152--69207	15	3.5	18	75	24	63	42	0	0	57	0.99
69106--69288	56	3.1	58	66	23	146	42	2	6	49	1.39
69272--69306	18	2.0	17	88	5	52	45	0	0	54	0.99
69260--69534	147	1.9	149	95	1	500	47	2	3	46	1.35
69419--69453	18	2.0	17	88	5	52	45	0	0	54	0.99
69615--69709	45	2.1	45	86	1	129	33	26	5	34	1.79
69690--69741	16	3.2	16	91	0	77	36	34	0	28	1.58
71025--71055	3	10.3	3	92	0	53	32	3	0	64	1.09
71525--71551	11	2.5	11	100	0	54	25	0	18	55	1.43
72597--72644	16	3.1	15	90	6	69	64	2	2	31	1.16
72593--72648	24	2.3	24	81	6	69	66	1	1	30	1.12
72593--72644	8	6.5	8	82	8	61	65	1	1	30	1.14
72791--73007	25	9.0	25	72	11	125	54	4	6	35	1.45
73499--73638	60	2.4	58	92	4	228	23	3	46	26	1.68
73499--73638	30	4.7	29	87	6	201	23	3	46	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74559--74593	14	2.5	14	90	0	61	60	5	17	17	1.55
74493--74666	89	2.0	89	87	4	253	36	19	18	25	1.94
74580--75407	217	3.7	218	90	5	1228	33	21	17	27	1.96
74579--75252	73	9.2	72	86	7	912	33	21	17	27	1.96
75233--75265	13	2.5	13	95	0	57	66	6	9	18	1.40
75166--75338	86	2.0	85	84	3	222	39	18	15	26	1.91
74411--75407	454	2.2	443	86	6	1342	33	21	17	27	1.95
85298--85345	16	3.1	15	90	6	69	64	2	2	31	1.16
85294--85349	24	2.3	24	81	6	69	66	1	1	30	1.12
85294--85345	8	6.5	8	82	8	61	65	1	1	30	1.14
85500--85564	25	2.8	24	83	6	80	52	6	7	33	1.55
85589--85724	25	5.6	25	68	17	72	56	3	5	34	1.39
85576--85649	31	2.6	27	76	14	76	60	2	2	33	1.25
86216--86387	30	5.7	30	90	0	272	23	3	47	25	1.67
86216--86387	60	2.9	60	95	0	308	23	3	47	25	1.67
87748--87805	5	10.8	5	83	12	71	43	0	0	56	0.99
87751--87806	12	4.5	12	81	16	69	42	0	0	57	0.99
89121--89159	18	2.1	19	90	4	62	41	0	10	48	1.37
89397--89497	38	2.5	41	72	15	104	23	18	28	28	1.98
89399--89533	39	3.4	39	75	6	121	24	19	28	28	1.98
89656--89696	19	2.2	19	87	12	59	46	0	24	29	1.53
96606--96687	35	2.4	34	80	9	89	46	2	14	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97484--97533	14	3.4	14	78	8	55	46	2	4	48	1.32
97503--97533	15	2.0	16	93	6	55	51	0	0	48	1.00

Tables:   1

The End!