genome.fa.s619.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold23_ERROPOS187738
Parameters: 2 7 7 80 10 50 1000
Length:  99999

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3706--3805	27	3.6	27	86	8	112	32	29	12	27	1.92
3708--3805	28	3.5	28	91	2	144	32	28	12	26	1.92
11786--11855	27	2.6	26	95	2	95	31	28	12	27	1.93
11786--11883	28	3.5	28	90	2	135	31	28	13	26	1.94
15442--15485	20	2.1	20	87	8	61	38	20	4	36	1.73
19418--19486	27	2.6	27	82	17	90	34	27	11	26	1.91
27550--27621	27	2.7	26	80	8	90	33	26	12	27	1.92
30108--30147	1	40.0	1	94	0	71	2	0	97	0	0.17
33223--33403	39	4.6	40	77	14	189	24	27	22	24	2.00
41351--41572	118	1.9	119	84	6	299	25	27	22	24	2.00
41349--41572	40	5.7	40	85	7	287	25	27	22	24	2.00
44461--44528	18	3.8	18	75	7	57	41	13	1	44	1.52
45486--45533	17	2.8	17	90	3	78	14	47	27	10	1.76
45578--45615	18	2.2	18	85	4	51	13	44	26	15	1.83
46497--46543	23	2.0	22	84	8	58	40	31	4	23	1.74
49063--49224	6	26.3	6	70	18	102	49	15	15	19	1.80
49083--49224	31	4.6	31	85	6	180	49	15	15	19	1.80
49987--50394	27	15.2	27	83	3	396	26	18	17	37	1.93
50188--50504	27	11.8	26	83	4	231	29	13	18	38	1.89
50296--50555	80	3.3	78	83	6	281	30	11	20	38	1.87
50245--50555	27	11.7	26	79	8	198	29	11	19	38	1.87
50245--50555	54	5.8	53	79	4	243	29	11	19	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52482--52643	6	26.3	6	72	16	118	47	16	16	19	1.83
52482--52643	19	8.8	18	71	16	118	47	16	16	19	1.83
52502--52643	31	4.6	31	93	0	221	47	16	16	19	1.83
52763--52848	27	3.2	26	81	4	82	37	18	20	23	1.94
52811--52870	27	2.2	27	85	5	77	40	23	20	16	1.91
53428--53862	27	16.2	27	77	4	308	26	18	18	36	1.93
53428--53835	54	7.6	54	80	4	387	26	18	18	36	1.94
53427--53862	80	5.4	82	81	3	440	26	18	18	36	1.94
53472--53969	54	9.3	54	76	9	184	27	15	18	37	1.92
53817--54028	27	7.9	27	78	6	173	32	9	17	39	1.83
53823--54028	80	2.6	79	83	4	245	32	9	16	40	1.82
53819--54025	107	1.9	107	84	5	276	31	9	18	40	1.82
53883--54049	27	6.3	27	75	12	114	30	9	19	40	1.84
55997--56164	6	27.3	6	71	15	112	48	15	15	20	1.81
56024--56164	31	4.5	31	90	0	192	48	15	15	20	1.81
56246--56346	27	3.8	26	82	5	112	36	19	22	20	1.95
56911--57347	27	16.2	27	87	3	515	25	20	17	36	1.94
56911--57347	81	5.4	81	86	1	572	25	20	17	36	1.94
57331--57561	27	8.7	27	75	6	175	29	10	21	38	1.87
57344--57540	80	2.5	80	85	5	247	29	11	20	38	1.87
57331--57561	53	4.3	53	75	6	198	29	10	21	38	1.87
59518--59676	6	25.8	6	74	14	128	47	15	16	19	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59518--59676	31	5.2	31	90	2	223	47	15	16	19	1.82
59609--59666	19	3.4	19	65	30	58	46	17	17	18	1.84
59796--59903	27	4.0	26	82	5	117	37	20	22	20	1.95
59917--59992	32	2.4	31	80	6	80	36	23	18	21	1.95
62144--62335	6	31.3	6	74	14	151	48	15	16	19	1.80
62194--62335	31	4.6	31	92	0	221	47	15	17	19	1.83
62269--62325	19	3.4	19	64	31	56	47	15	17	19	1.83
62455--62562	27	4.0	26	80	5	108	37	20	21	21	1.95
63145--63537	27	14.6	27	84	3	443	23	19	19	37	1.94
63145--63537	81	4.9	81	86	2	513	23	19	19	37	1.94
63333--63590	54	4.8	54	81	6	204	26	17	18	37	1.93
63523--63730	27	7.8	27	76	7	183	29	10	20	39	1.86
63496--63730	80	2.9	80	80	7	269	29	12	19	38	1.88
63532--63727	107	1.8	107	87	2	295	29	10	20	39	1.85
63523--63751	107	2.2	106	82	6	284	29	10	20	40	1.85
63522--63751	53	4.3	52	74	12	189	29	10	20	40	1.86
65748--65849	31	3.3	31	87	5	143	49	15	15	19	1.80
65701--65849	6	24.3	6	73	14	90	51	15	13	19	1.76
66234--66292	22	2.7	22	78	0	64	35	22	22	20	1.96
66642--67070	27	15.9	27	84	2	477	26	19	16	37	1.92
66982--67150	54	3.2	53	79	5	137	31	13	15	39	1.87
67037--67292	80	3.2	80	79	6	241	30	10	19	39	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67075--67268	107	1.8	107	85	4	275	31	9	19	39	1.84
67064--67292	27	8.6	26	72	11	144	30	9	20	39	1.84
67198--67299	53	1.9	53	80	7	118	30	10	19	39	1.86
69280--69411	40	3.3	40	90	0	192	23	16	25	34	1.95
76823--76917	40	2.4	40	85	0	127	25	17	22	34	1.96
76820--76936	40	2.9	40	72	9	105	25	17	22	35	1.95
77009--77063	16	3.4	16	84	0	74	32	5	29	32	1.80
77311--77343	17	1.9	17	100	0	66	63	0	0	36	0.95
83570--83645	23	3.2	23	63	26	59	32	19	9	38	1.84
83556--83651	48	2.0	48	97	0	183	31	21	10	36	1.87
88657--88825	93	1.8	93	84	7	236	23	27	20	28	1.99
88980--89009	14	2.1	14	100	0	60	43	6	0	50	1.28

Tables:   1

The End!