Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3199
Parameters: 2 7 7 80 10 50 1000
Length:  91379

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9142--9211
9
7.3
9
76
12
68
30
0
0
70
0.88
9114--9217
39
2.6
39
82
14
131
37
0
0
60
1.10
9346--9374
13
2.1
14
93
6
51
79
0
3
17
0.87
12229--12257
5
5.8
5
100
0
58
62
0
0
37
0.96
12608--12682
31
2.4
31
82
8
98
16
25
32
26
1.96
12997--13040
21
2.1
21
83
8
54
38
6
6
47
1.57
17065--17143
25
3.2
25
65
13
72
34
12
5
48
1.63
17040--17146
50
2.1
50
96
0
205
33
16
5
43
1.72
19886--19915
15
2.0
15
100
0
60
26
6
13
53
1.64
21134--21245
48
2.3
48
84
3
145
36
28
14
20
1.92
21134--21257
24
5.2
23
77
14
108
36
29
13
20
1.91
21703--21732
15
2.0
15
93
0
51
53
23
0
23
1.46
25873--26193
46
7.0
47
89
2
413
20
24
16
38
1.92
28329--28380
11
4.7
11
76
9
52
63
3
0
32
1.12
32422--32533
24
4.7
24
87
0
152
37
28
13
20
1.90
35504--35649
37
4.0
37
91
1
233
24
22
15
36
1.93
35613--35881
46
5.6
46
90
6
358
28
22
14
34
1.93
35656--35875
52
4.3
52
87
8
326
27
22
14
35
1.93
35613--35881
98
2.7
97
84
11
350
28
22
14
34
1.93
39325--39452
42
3.1
43
74
17
110
41
15
20
22
1.90
39385--39463
20
3.9
20
77
8
70
37
16
20
25
1.93
49321--49360
21
1.9
21
85
10
55
27
0
2
70
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49613--49648
10
3.5
10
85
7
54
33
8
2
55
1.44
50623--50692
35
2.0
35
94
0
122
44
12
17
25
1.84
62113--62265
76
2.0
76
94
2
272
45
16
12
26
1.82
63316--63341
3
8.7
3
100
0
52
30
0
0
69
0.89
65763--65801
20
2.0
20
89
0
60
53
2
0
43
1.14
71770--71799
14
2.1
14
93
0
51
46
36
0
16
1.47

Tables:   1

The End!