genome.fa.s625.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2124
Parameters: 2 7 7 80 10 50 1000
Length:  73828

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1380--1533	40	3.9	40	79	12	122	27	25	20	26	1.99
1386--1552	79	2.1	79	81	6	187	26	27	19	25	1.99
1423--1604	40	4.6	39	80	9	183	28	27	20	24	1.99
1426--1604	78	2.3	78	83	11	206	27	27	20	24	1.99
8384--8564	80	2.3	80	83	9	219	27	27	20	23	1.99
8381--8564	40	4.6	40	81	7	196	28	27	20	23	1.99
13649--13751	44	2.3	46	84	3	129	31	19	12	36	1.89
21258--21453	40	4.9	40	90	4	297	25	27	22	23	2.00
21232--21449	80	2.7	79	89	3	305	24	27	23	24	2.00
29480--29617	40	3.5	39	86	4	172	23	26	24	25	2.00
34455--34551	25	3.9	25	80	0	113	28	18	24	27	1.98
34456--34551	50	1.9	50	86	0	138	29	18	23	28	1.98
34475--34565	25	3.6	25	78	3	74	29	19	24	26	1.98
35893--35929	19	1.9	19	89	10	58	29	18	16	35	1.93
35894--35936	20	2.2	19	84	12	52	37	16	13	32	1.88
42052--42089	20	1.9	20	88	0	58	39	7	10	42	1.69
42448--42504	23	2.5	22	76	15	71	28	24	15	31	1.96
42680--42770	40	2.3	40	83	7	105	41	7	12	38	1.71
42680--42770	20	4.6	20	80	10	89	41	7	12	38	1.71
42679--42822	20	7.2	20	78	6	82	39	8	15	36	1.77
42677--42809	60	2.2	60	75	15	132	39	8	15	36	1.77
46397--46573	46	3.8	45	80	12	207	20	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46394--46565	93	1.8	93	94	0	308	20	20	29	28	1.98
49146--49251	42	2.5	42	90	0	158	16	21	33	28	1.96
52868--53039	79	2.2	78	83	7	213	25	22	28	24	1.99
52815--53037	40	5.6	39	79	7	207	25	21	27	24	1.99
52895--53072	79	2.2	80	82	3	200	25	22	28	23	1.99
60375--60598	40	5.7	39	81	8	222	25	21	28	25	1.99
60455--60631	78	2.3	79	83	3	205	25	22	28	23	1.99
65800--65853	27	2.0	27	96	3	99	42	7	22	27	1.80
72856--72915	25	2.4	25	81	13	70	10	21	6	61	1.50

Tables:   1

The End!