Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold214
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52060
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Found at i:8160 original size:29 final size:30
Alignment explanation
Indices: 8121--8199 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
8111 CTTAATAATC
8121 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
8151 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
8180 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
8200 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:12448 original size:23 final size:23
Alignment explanation
Indices: 12422--12586 Score: 124
Period size: 23 Copynumber: 7.3 Consensus size: 23
12412 TAATGAATAA
* * *
12422 TAAGCTCTATTAAGCTAAAATGG
1 TAAGCTCTATCAAGCTGAAACGG
* **
12445 TAAGCTCTATCAAGC-AAAACAA
1 TAAGCTCTATCAAGCTGAAACGG
* * *
12467 TAAGCTCAAACGAGCTGAAACGG
1 TAAGCTCTATCAAGCTGAAACGG
* *
12490 TAAGCTCTACCAAGCT--AACAG
1 TAAGCTCTATCAAGCTGAAACGG
*
12511 TAAGCTC-ATACGAGCTGAAACGG
1 TAAGCTCTAT-CAAGCTGAAACGG
* *
12534 TAAGCTCTATCAAGTTGAAATGG
1 TAAGCTCTATCAAGCTGAAACGG
* * *
12557 TAAGCTAATAT-GAGCTGAAATGG
1 TAAGCT-CTATCAAGCTGAAACGG
12580 TAAGCTC
1 TAAGCTC
12587 CAATGAGATA
Statistics
Matches: 112, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
20 1 0.01
21 16 0.14
22 16 0.14
23 74 0.66
24 5 0.04
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (23 bp):
TAAGCTCTATCAAGCTGAAACGG
Found at i:12527 original size:44 final size:44
Alignment explanation
Indices: 12434--12586 Score: 173
Period size: 44 Copynumber: 3.4 Consensus size: 44
12424 AGCTCTATTA
* * * * *
12434 AGCTAAAATGGTAAGCTCTATCAAGCAAAACAATAAGCTCAAACG
1 AGCTGAAACGGTAAGCTCTATCAAGC-TAACAGTAAGCTCATACG
*
12479 AGCTGAAACGGTAAGCTCTACCAAGCTAACAGTAAGCTCATACG
1 AGCTGAAACGGTAAGCTCTATCAAGCTAACAGTAAGCTCATACG
* * *
12523 AGCTGAAACGGTAAGCTCTATCAAGTTGAA-ATGGTAAGCTAATATG
1 AGCTGAAACGGTAAGCTCTATCAAGCT-AACA--GTAAGCTCATACG
*
12569 AGCTGAAATGGTAAGCTC
1 AGCTGAAACGGTAAGCTC
12587 CAATGAGATA
Statistics
Matches: 94, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
44 41 0.44
45 25 0.27
46 28 0.30
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (44 bp):
AGCTGAAACGGTAAGCTCTATCAAGCTAACAGTAAGCTCATACG
Found at i:13007 original size:38 final size:38
Alignment explanation
Indices: 12956--13034 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
12946 ATATCAAATT
12956 AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
1 AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
12994 AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
1 AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
13032 AAC
1 AAC
13035 ATTCATTTTG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.35
Consensus pattern (38 bp):
AACTCATTCAAAATTTCATTCAATTCAATTTAGCCTAA
Found at i:17209 original size:29 final size:29
Alignment explanation
Indices: 17138--17262 Score: 146
Period size: 29 Copynumber: 4.3 Consensus size: 29
17128 AAGTCTACAT
*
17138 ACATGCATATGGCCCA-CTAGGCCC-AATC
1 ACATTCATATGGCCCATC-AGGCCCAAATC
* *
17166 TCATTCATATAGCCCATCAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * *
17195 ATATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
* * *
17224 ACATTCATACGACCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATCAGGCCCAAATC
17253 ACATTCATAT
1 ACATTCATAT
17263 ACATGCTTTC
Statistics
Matches: 82, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 19 0.23
29 63 0.77
ACGTcount: A:0.31, C:0.32, G:0.13, T:0.24
Consensus pattern (29 bp):
ACATTCATATGGCCCATCAGGCCCAAATC
Found at i:17342 original size:17 final size:18
Alignment explanation
Indices: 17320--17354 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
17310 TTCCTATTAT
*
17320 GGGCCCAA-CAGCCCATC
1 GGGCCCAATAAGCCCATC
17337 GGGCCCAATAAGCCCATC
1 GGGCCCAATAAGCCCATC
17355 CTGGCCCGGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.26, C:0.43, G:0.23, T:0.09
Consensus pattern (18 bp):
GGGCCCAATAAGCCCATC
Found at i:20374 original size:17 final size:18
Alignment explanation
Indices: 20352--20385 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
20342 CACATTGAAG
20352 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
20369 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
20386 CTTCCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:21568 original size:29 final size:29
Alignment explanation
Indices: 21502--21621 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
21492 TACATACATG
21502 CATATGGCCCA-CTAGGCCC-AATCTCATT
1 CATATGGCCCATC-AGGCCCAAATCTCATT
* *
21530 CATATGGCCCATCAGGCCCAAATTTTATT
1 CATATGGCCCATCAGGCCCAAATCTCATT
* * *
21559 CGTATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATCAGGCCCAAATCTCATT
* * * *
21588 CATACGGCCCATTAGGCCTAAATCACATT
1 CATATGGCCCATCAGGCCCAAATCTCATT
21617 CATAT
1 CATAT
21622 ACATGCTTTC
Statistics
Matches: 79, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
28 17 0.22
29 62 0.78
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATCAGGCCCAAATCTCATT
Found at i:29367 original size:25 final size:25
Alignment explanation
Indices: 29324--29394 Score: 124
Period size: 25 Copynumber: 2.8 Consensus size: 25
29314 GAGGAAGTGC
*
29324 AAAAGGGCTTTTGCCCCAGTTTATCG
1 AAAAGGGC-TTTGCCCCAGTTTATCA
29350 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
29375 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
29395 ATTAAAAGAG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 36 0.82
26 8 0.18
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:29407 original size:24 final size:24
Alignment explanation
Indices: 29323--29407 Score: 118
Period size: 25 Copynumber: 3.4 Consensus size: 24
29313 GGAGGAAGTG
29323 CAAAAGGGCTTTTGCCCCAGTTTAT
1 CAAAAGGGC-TTTGCCCCAGTTTAT
29348 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
29373 CAAAAAGGGCTTTGCCCCAG-TTAT
1 C-AAAAGGGCTTTGCCCCAGTTTAT
*
29397 TAAAAGAGGCT
1 CAAAAG-GGCT
29408 AGGCCTCCAG
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
23 5 0.09
24 8 0.14
25 35 0.62
26 8 0.14
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCCAGTTTAT
Found at i:29418 original size:50 final size:51
Alignment explanation
Indices: 29324--29419 Score: 126
Period size: 50 Copynumber: 1.9 Consensus size: 51
29314 GAGGAAGTGC
**
29324 AAAAGGGCTTTTGCCCCAGTTTATCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTATCGAAAAGGGCTAGGCCCCAGTTTATCA
*
29375 AAAAGGGC-TTTGCCCCAG-TTAT-TAAAAGAGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTTGCCCCAGTTTATCGAAAAG-GGCTAGGCC-CCAGTT
29420 ATATGATAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
48 5 0.12
49 11 0.28
50 16 0.40
51 8 0.20
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTTTGCCCCAGTTTATCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:29649 original size:30 final size:31
Alignment explanation
Indices: 29615--29758 Score: 213
Period size: 30 Copynumber: 4.7 Consensus size: 31
29605 CGTTTACAGT
29615 AAAGGCTTCGGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* *
29645 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
29676 AAAGGCTTCAGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * *
29706 AAAGGCTTCAGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
29737 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
29759 TTGAGATTAA
Statistics
Matches: 103, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
30 54 0.52
31 49 0.48
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:29710 original size:61 final size:61
Alignment explanation
Indices: 29615--29758 Score: 263
Period size: 61 Copynumber: 2.4 Consensus size: 61
29605 CGTTTACAGT
*
29615 AAAGGCTTCGGCCCAGTGATATGATAATGAAAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGATAATGAAAAGGCTTCAGCCCAGTGACATGAATAATGC
*
29676 AAAGGCTTCAGCCCAGTGATATGATAATGAAAAGGCTTCAGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAGTGATATGATAATGAAAAGGCTTCAGCCCAGTGACATGAATAATGC
29737 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
29759 TTGAGATTAA
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
60 5 0.06
61 75 0.94
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (61 bp):
AAAGGCTTCGGCCCAGTGATATGATAATGAAAAGGCTTCAGCCCAGTGACATGAATAATGC
Found at i:37340 original size:25 final size:25
Alignment explanation
Indices: 37274--37343 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
37264 GAGGAAGTGC
* *
37274 AAAAGGGCCTTTGCCCAAGTTTACCG
1 AAAAGGG-CTTTGCCCCAGTTTACCA
*
37300 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
37325 AAAAGGGCTTTACCCCAGT
1 AAAAGGGCTTTGCCCCAGT
37344 CATTAAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 33 0.82
26 7 0.17
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:37357 original size:24 final size:25
Alignment explanation
Indices: 37300--37357 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 25
37290 AAGTTTACCG
* *
37300 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTACCCCAGTTCATCA
*
37325 AAAAGGGCTTTACCCCAG-TCATTA
1 AAAAGGGCTTTACCCCAGTTCATCA
*
37349 AAAAAGGCT
1 AAAAGGGCT
37358 AGGCCTCCAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 12 0.41
25 17 0.59
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTACCCCAGTTCATCA
Found at i:37601 original size:30 final size:31
Alignment explanation
Indices: 37565--37647 Score: 116
Period size: 30 Copynumber: 2.7 Consensus size: 31
37555 CGTTTACAGT
37565 AAAGGCTTCAGCCCAGTGATATG-ATAATGA
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
* * *
37595 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
*
37626 AAAGGCTTCAGCCTAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
37648 TTGAGATTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
30 25 0.54
31 21 0.46
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGAATAATGA
Found at i:39027 original size:35 final size:35
Alignment explanation
Indices: 38987--39056 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
38977 TTATGTAATG
* *
38987 ATATTTCATCCTGTGTGCAGATGGAATTAGAAACA
1 ATATTTCATCATGTGTACAGATGGAATTAGAAACA
* *
39022 ATATTTCATCATTTGTACAGATGGATTTAGAAACA
1 ATATTTCATCATGTGTACAGATGGAATTAGAAACA
39057 CTCTACGATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (35 bp):
ATATTTCATCATGTGTACAGATGGAATTAGAAACA
Found at i:42739 original size:39 final size:40
Alignment explanation
Indices: 42696--43035 Score: 291
Period size: 39 Copynumber: 8.6 Consensus size: 40
42686 TCCTCGTTCA
* * *
42696 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
* * *
42735 AATGCCTTCGGGACTTAACCCGGATTTAATGACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
* * *** *
42775 AATGCCTTCGGGACTTAACCCGGATATAGCT-CCTCGTTCA
1 AATGCCTTCGGGACTTAACCCGGATTTAG-TAACTCACACG
* * *
42815 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
* *
42854 AATGCCTTCGGGACTTAACCCGGATTTA-TGACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
* * *
42893 AATGCCTTCGGGACTTAACCCGGATTTAATATCTCACACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
* * * * *
42933 AAGGCCTTCGGG-CTTAACCCGGAACTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCACACG
** * * * *
42972 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACG
* *
43012 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
43036 CAGCATTCAA
Statistics
Matches: 245, Mismatches: 45, Indels: 21
0.79 0.14 0.07
Matches are distributed among these distances:
38 10 0.04
39 117 0.48
40 111 0.45
41 7 0.03
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
Found at i:42995 original size:79 final size:79
Alignment explanation
Indices: 42694--43035 Score: 306
Period size: 79 Copynumber: 4.3 Consensus size: 79
42684 GCTCCTCGTT
* * ** * *
42694 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAACCCGGAATT-GTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
42758 ATTTAATGACTCGCA
65 ATTTAATCACTCACA
* * * ** * *
42773 CGAATGCCTTCGGGACTTAACCCGGATATAGCT-CCTCGTTCAAATGCCTTCGGGACATAGCCCG
1 CAAATGCCTTCGGGACTTAACCCGGA-ATTG-TATCTCGCACAAATGCCTTCGGGACTTAACCCG
* * *
42837 GTTTTAGTAACTCACA
64 GATTTAATCACTCACA
*
42853 C-AATGCCTTCGGGACTTAACCCGG-ATT-TATGACTCGCACGAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGAATTGTAT--CTCGCACAAATGCCTTCGGGACTTAACCCG
42915 GATTTAAT-ATCTCACA
64 GATTTAATCA-CTCACA
* **
42931 CAAAGGCCTTCGGG-CTTAACCCGGAACTTGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAACCCGGAA-TTGTATCTCGCACAAATGCCTTCGGGA-CTTAACCCG
* * *
42994 GATATATTCACTTAGCA
64 GATTTAATCACTCA-CA
*
43011 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
43036 CAGCATTCAA
Statistics
Matches: 215, Mismatches: 33, Indels: 29
0.78 0.12 0.10
Matches are distributed among these distances:
75 1 0.00
77 3 0.01
78 51 0.24
79 103 0.48
80 54 0.25
81 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAATCACTCACA
Found at i:43044 original size:41 final size:41
Alignment explanation
Indices: 42967--43044 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
42957 CTTGTATCTC
* * *
42967 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
43008 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
43045 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:50373 original size:39 final size:39
Alignment explanation
Indices: 50330--50435 Score: 119
Period size: 39 Copynumber: 2.7 Consensus size: 39
50320 TCCTCGTTCA
* * *
50330 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAAT-ACTCACACG
* *
50369 AATGCCTTCGGGACTTAACCCGGATTTAATACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATACTCACACG
*
50408 AATGCCTTC-GG-CTTAACCCGGACTTTAA
1 AATGCCTTCGGGACATAACCCGGA-TTTAA
50436 ATGCCTTCGG
Statistics
Matches: 60, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
37 11 0.18
38 14 0.23
39 35 0.58
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACATAACCCGGATTTAATACTCACACG
Done.