Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3481
Parameters: 2 7 7 80 10 50 1000
Length:  51441

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5266--5290
13
1.9
13
100
0
50
64
24
0
12
1.27
15578--15611
17
2.0
17
88
0
50
76
8
2
11
1.12
16064--16097
14
2.4
14
90
9
52
64
0
2
32
1.08
19010--19054
22
2.0
22
100
0
90
53
0
17
28
1.44
19339--19405
33
2.0
33
97
0
125
23
14
28
32
1.95
20040--20095
22
2.4
24
85
8
80
39
0
0
60
0.97
20060--20102
18
2.4
18
84
3
52
32
0
2
65
1.06
22282--22341
22
2.7
23
73
19
63
66
6
0
26
1.16
22291--22324
4
8.0
4
90
9
50
73
2
0
23
0.97
23676--23727
23
2.3
22
75
21
54
9
23
1
65
1.32
26097--26156
22
2.7
23
73
19
63
66
6
0
26
1.16
26106--26139
4
8.0
4
90
9
50
73
2
0
23
0.97
29919--29961
13
3.5
13
78
12
54
0
6
30
62
1.21
29920--29965
24
1.9
24
95
0
83
0
6
30
63
1.20
32778--32962
100
1.9
100
87
4
275
52
9
4
33
1.53
40083--40165
27
3.1
27
82
0
94
20
24
27
27
1.99
44434--44476
10
4.2
10
81
3
50
11
2
4
81
0.93
44428--44481
19
2.8
20
82
2
65
18
1
3
75
1.03
45584--45835
73
3.5
72
91
2
389
31
17
17
32
1.94
45768--46014
88
2.8
87
83
5
273
34
19
17
28
1.94
46236--46573
76
4.5
74
84
5
403
32
20
15
32
1.93
46591--46765
70
2.5
70
85
4
212
33
22
14
28
1.94

Tables:   1

The End!