Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1172
Parameters: 2 7 7 80 10 50 1000
Length:  46899

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9941--9989
19
2.4
21
86
13
75
4
22
6
67
1.30
10031--10077
17
2.6
17
78
18
51
4
25
4
65
1.29
12667--12705
18
2.1
19
85
4
53
7
23
2
66
1.30
12698--12777
24
3.4
22
74
10
70
12
25
0
62
1.30
14223--14340
55
2.1
55
83
6
150
25
21
13
39
1.90
14964--15018
20
2.8
20
88
0
83
29
16
29
25
1.97
17186--17233
20
2.4
20
71
0
51
33
18
27
20
1.96
18983--19079
30
3.2
30
72
8
99
28
16
26
27
1.97
27509--27561
23
2.4
22
76
20
56
9
18
1
69
1.25
31409--31506
30
3.3
30
71
4
81
28
26
15
29
1.96
33213--33309
30
3.2
30
72
8
99
28
16
26
27
1.97
35022--35049
4
7.0
4
100
0
56
25
0
0
75
0.81
38798--38826
12
2.3
13
94
5
51
24
0
0
75
0.80
40257--40287
12
2.6
12
100
0
62
25
16
12
45
1.83
40335--40397
5
12.0
5
76
18
58
3
19
1
76
1.01
40335--40397
16
4.0
16
75
15
60
3
19
1
76
1.01
41320--41366
10
4.7
10
82
10
51
8
10
4
76
1.13
41349--41386
14
2.5
15
83
8
51
10
7
5
76
1.15
46673--46716
22
2.1
20
87
8
61
13
13
22
50
1.77

Tables:   1

The End!