Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2016
Parameters: 2 7 7 80 10 50 1000
Length:  30654

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1693--1739
21
2.2
22
92
7
80
12
4
8
74
1.19
2377--2424
14
3.4
14
85
0
60
43
6
31
18
1.75
7089--7185
30
3.2
30
71
8
81
28
15
27
27
1.96
9724--9821
30
3.3
30
76
0
106
30
16
25
27
1.96
12031--12113
30
2.7
30
81
9
89
13
21
1
63
1.35
12064--12119
18
3.1
18
76
5
51
7
19
3
69
1.27
12089--12113
12
2.1
12
100
0
50
8
16
0
76
1.02
12116--12146
12
2.6
12
94
0
53
29
16
9
45
1.79
12194--12250
5
11.0
5
76
14
53
1
15
3
78
0.96
12198--12246
26
1.9
25
84
12
64
2
14
4
79
0.97
12207--12261
20
2.7
20
78
18
60
0
16
5
78
0.93
13161--13192
13
2.5
13
95
5
57
12
6
6
75
1.19
14842--14929
30
2.9
30
75
0
95
28
17
27
27
1.97
15939--16003
27
2.4
27
80
12
71
10
24
1
63
1.36
15941--15992
27
1.9
28
84
7
72
13
25
1
59
1.44
16075--16131
15
3.8
14
78
15
60
1
17
3
77
1.00
16075--16124
5
9.8
5
76
20
50
2
18
2
78
0.95
16086--16134
20
2.3
20
80
16
55
0
18
4
77
0.92
17916--17978
29
2.1
30
85
8
85
22
20
19
38
1.94
22058--22090
17
1.9
17
88
11
50
45
30
12
12
1.78
25341--25504
12
13.7
12
68
15
54
67
3
18
9
1.34
25351--25416
22
3.0
21
82
8
80
74
4
15
6
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25363--25402
11
3.6
11
86
6
55
80
5
15
0
0.88
25363--25420
6
10.2
6
72
9
50
75
5
15
3
1.11
25363--25428
17
3.9
17
73
15
64
74
6
15
4
1.18
27312--27365
20
2.7
20
82
0
63
24
20
18
37
1.94
27312--27385
30
2.5
30
86
8
98
21
20
18
39
1.93
27312--27376
20
3.2
20
71
16
53
23
21
16
38
1.93

Tables:   1

The End!