genome.fa.s661.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1220
Parameters: 2 7 7 80 10 50 1000
Length:  111372

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3277--3415	42	3.3	42	87	0	179	25	28	24	22	2.00
3832--3871	10	3.8	10	84	12	53	52	25	2	20	1.59
4576--4699	43	2.9	43	73	13	112	33	26	15	25	1.95
9580--9619	15	2.6	15	84	4	53	77	0	7	15	0.98
22134--22292	43	3.7	42	70	12	119	24	18	25	31	1.98
24608--24639	2	16.0	2	100	0	64	50	50	0	0	1.00
26120--26150	15	2.1	15	93	0	53	54	25	0	19	1.44
30206--30238	6	5.5	6	96	0	57	81	0	3	15	0.80
36309--36375	32	2.1	32	97	0	125	46	13	14	25	1.82
36803--36900	28	3.5	28	94	0	160	32	10	26	30	1.89
38885--39038	28	5.5	28	82	4	175	18	18	32	30	1.95
38883--39047	56	2.9	57	83	3	208	19	18	32	29	1.95
38883--39068	28	6.5	29	79	3	128	19	17	33	30	1.95
38883--39068	57	3.2	57	84	4	232	19	17	33	30	1.95
44004--44105	28	3.6	28	93	0	159	36	10	23	29	1.89
47259--47514	47	5.5	47	76	8	172	36	16	23	23	1.94
49289--49492	40	5.1	40	89	4	290	21	23	29	25	1.99
50856--50975	55	2.2	55	85	4	154	35	19	23	22	1.96
53540--53620	33	2.4	35	77	10	96	29	23	18	28	1.98
53930--53982	26	2.0	26	85	7	72	20	16	22	39	1.92
61418--61498	33	2.4	35	77	10	96	29	23	18	28	1.98
61809--61861	26	2.0	26	82	7	63	20	13	22	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62977--63010	17	1.9	18	88	5	52	58	0	35	5	1.22
63109--63214	24	4.4	23	84	7	131	19	40	3	35	1.70
70102--70278	46	3.8	46	78	12	200	21	20	28	29	1.98
70100--70271	93	1.8	93	93	0	299	21	20	29	28	1.98
80062--80162	42	2.4	43	80	6	107	28	22	19	28	1.98
87069--87203	39	3.4	39	88	6	193	24	22	28	24	1.99
105505--105640	39	3.5	40	92	4	208	24	22	29	23	1.99

Tables:   1

The End!