Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1504
Parameters: 2 7 7 80 10 50 1000
Length:  102737

Tables:   1   

This is table  1  of  1  ( 76 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2730--2997
72
3.8
73
91
2
395
30
14
18
36
1.90
3001--3554
72
7.7
72
94
2
927
31
16
18
34
1.93
3436--4108
144
5.0
121
87
9
433
31
16
17
34
1.92
3558--4177
72
8.7
72
94
2
1049
31
16
18
34
1.93
4059--4446
122
3.0
124
80
13
406
30
15
18
35
1.92
4177--4553
73
5.2
73
91
4
606
29
17
17
35
1.93
4177--4549
145
2.6
143
91
3
615
30
17
17
34
1.93
4472--4636
87
1.9
87
83
7
219
26
20
18
34
1.96
4632--4664
14
2.4
14
95
5
59
12
9
9
69
1.36
4752--5060
52
5.9
54
90
6
483
28
15
18
36
1.92
5302--5337
15
2.4
16
90
9
58
72
2
0
25
0.98
5333--5434
30
3.4
30
86
2
134
29
21
3
45
1.70
6019--6060
11
3.8
11
81
12
59
80
0
19
0
0.70
6057--6083
11
2.5
11
100
0
54
70
0
7
22
1.12
6674--6786
36
3.1
36
74
5
104
36
11
7
45
1.68
6739--6785
18
2.6
17
78
12
58
42
12
4
40
1.63
6683--7050
17
20.7
17
68
16
115
33
11
11
43
1.77
6820--6913
18
5.3
17
80
11
100
32
11
11
43
1.77
6664--7051
35
10.9
34
70
15
182
33
11
11
43
1.77
7029--7082
21
2.6
20
77
8
63
42
9
7
40
1.65
7667--7714
21
2.3
20
82
10
60
58
2
0
39
1.10
7688--7785
39
2.5
39
78
8
101
62
6
1
30
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8315--8428
18
6.3
18
71
18
69
27
1
2
68
1.13
8315--8384
28
2.4
29
77
13
74
28
1
1
68
1.06
8324--8410
11
8.3
10
74
13
59
28
1
1
68
1.03
8362--8409
25
1.9
25
87
8
71
31
2
0
66
1.03
9573--9610
19
2.0
19
100
0
76
21
15
10
52
1.72
24611--24672
27
2.2
29
80
8
74
20
6
3
69
1.25
31696--31756
15
4.1
15
71
10
54
57
1
0
40
1.08
31691--31752
30
2.1
30
87
6
90
54
3
0
41
1.16
33413--33441
6
4.8
6
100
0
58
34
51
0
13
1.42
34596--34677
14
5.9
14
76
20
59
32
3
1
62
1.21
34582--34720
3
48.3
3
67
21
75
30
5
0
64
1.20
34603--34712
38
3.0
39
76
18
110
30
3
0
64
1.17
34603--34677
26
3.0
23
81
11
71
33
2
1
62
1.17
34801--34847
15
3.0
15
84
12
51
14
4
6
74
1.17
34810--34847
17
2.2
17
90
4
58
10
5
7
76
1.15
35074--35193
50
2.5
48
78
16
124
32
8
0
58
1.34
35231--35261
11
2.7
11
95
5
53
38
0
6
54
1.26
35249--35303
22
2.5
23
75
19
62
34
7
5
52
1.52
47404--47430
14
1.9
14
100
0
54
22
14
11
51
1.73
47337--47535
102
1.9
103
86
1
283
24
18
17
39
1.92
47504--47538
14
2.5
14
95
0
61
17
17
5
60
1.55
47449--47862
83
4.7
91
75
12
323
27
17
20
35
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47854--47961
54
2.0
53
91
5
173
30
13
17
37
1.89
47783--48032
128
2.0
124
84
7
326
28
14
20
36
1.92
47907--48075
74
2.3
74
85
3
214
28
17
16
37
1.91
47982--48208
84
2.6
85
82
7
260
27
16
18
37
1.92
49337--49363
11
2.5
11
100
0
54
0
7
7
85
0.75
50154--50273
14
8.2
14
69
21
59
32
3
1
62
1.21
50135--50270
3
47.3
3
68
19
76
30
5
1
62
1.26
50154--50273
17
7.0
16
70
18
82
32
3
1
62
1.21
50154--50262
60
1.9
59
83
9
145
32
3
1
62
1.23
50775--50805
11
2.7
11
95
5
53
38
0
6
54
1.26
52413--52452
21
1.9
21
85
10
55
60
0
2
37
1.11
55979--56189
105
2.0
105
96
0
386
40
10
19
29
1.85
56221--56258
3
12.7
3
94
0
67
68
2
0
28
1.03
58757--58891
43
3.1
43
72
14
123
35
12
22
29
1.91
58723--58920
87
2.3
89
77
9
219
34
15
21
28
1.94
59064--59095
16
2.0
16
100
0
64
31
12
18
37
1.88
61225--61273
24
2.0
24
84
0
62
42
44
4
8
1.53
62627--62732
3
37.0
3
72
7
60
28
7
0
63
1.28
62627--62736
29
3.8
27
77
12
94
28
8
0
62
1.29
62649--62718
20
3.6
20
74
14
67
27
7
0
65
1.18
66073--66102
15
1.9
16
93
6
53
50
6
10
33
1.62
69404--69468
32
2.0
32
96
0
121
36
24
7
30
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75717--75917
106
1.9
106
96
0
375
29
20
19
30
1.97
80426--80490
32
2.0
32
100
0
130
38
24
6
30
1.80
88208--88456
50
4.8
50
85
4
284
20
29
24
26
1.99
88207--88456
100
2.4
104
88
6
357
20
29
24
26
1.99
88551--88582
13
2.5
13
94
0
55
56
12
0
31
1.37
88794--88851
30
1.9
30
85
0
80
32
24
1
41
1.65
90527--90557
15
2.1
15
93
0
53
48
0
9
41
1.36
91775--91801
10
2.7
10
100
0
54
14
7
0
77
0.97
96076--96182
26
4.2
26
91
2
180
36
24
6
32
1.81
96076--96182
51
2.1
52
94
1
189
36
24
6
32
1.81

Tables:   1

The End!