Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold546
Parameters: 2 7 7 80 10 50 1000
Length:  102609

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13622--13660
20
2.0
19
85
5
51
48
5
0
46
1.24
15053--15077
5
5.0
5
100
0
50
80
0
0
20
0.72
21874--21953
13
6.1
13
75
8
63
41
1
18
38
1.59
32486--32536
10
5.2
10
76
4
50
23
1
9
64
1.34
38768--38793
7
3.7
7
100
0
52
26
0
0
73
0.84
40924--40956
17
1.9
17
93
0
57
69
0
3
27
1.03
43922--43962
5
8.0
5
83
5
55
60
0
36
2
1.10
48086--48261
46
3.8
45
79
12
187
21
20
28
29
1.98
48083--48253
93
1.8
93
92
0
288
21
21
28
28
1.98
50103--50196
32
2.8
33
73
4
91
36
7
25
30
1.84
50079--50249
68
2.6
66
80
5
166
37
10
26
25
1.88
51915--52033
42
2.8
42
80
9
152
31
25
13
29
1.94
53575--53745
87
2.0
87
87
2
245
38
16
21
23
1.93
53727--53767
21
2.0
21
90
0
64
36
2
26
34
1.70
53641--53857
108
2.0
108
85
1
292
37
13
23
26
1.91
53575--53944
195
1.9
195
81
4
451
38
13
22
25
1.91
53749--54093
87
4.0
86
81
6
322
37
12
22
27
1.90
57053--57098
21
2.2
21
84
7
58
34
6
0
58
1.24
57046--57094
24
2.1
23
84
3
62
32
6
0
61
1.21
68809--69162
10
37.3
9
66
22
90
59
3
1
35
1.24
68855--68917
21
3.3
19
75
14
58
63
1
0
34
1.04
68878--68916
9
4.3
9
84
12
53
58
2
0
38
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68972--69110
18
7.7
17
69
17
66
61
2
0
35
1.13
69043--69110
27
2.4
26
85
11
82
64
0
0
35
0.94
69043--69135
29
3.3
30
81
11
83
61
2
0
36
1.08
69470--69502
16
2.1
16
100
0
66
45
6
6
42
1.53
72016--72207
10
19.8
10
66
19
54
35
2
4
57
1.32
72010--72129
10
12.6
9
68
17
64
34
1
3
60
1.23
72067--72111
22
2.1
22
84
8
58
35
2
2
60
1.22
72096--72207
48
2.4
45
75
19
102
36
2
4
56
1.34
72778--72806
7
4.3
7
95
4
51
72
0
0
27
0.85
72764--72806
14
3.1
13
86
10
50
69
0
0
30
0.88
88551--88582
14
2.3
14
94
0
55
31
21
6
40
1.78
93151--93179
12
2.3
13
94
5
51
13
3
0
82
0.79
93186--93219
2
17.0
2
87
0
50
50
5
0
44
1.26
98058--98093
18
2.0
18
100
0
72
33
0
5
61
1.19
102144--102177
2
17.0
2
87
0
50
50
5
0
44
1.26

Tables:   1

The End!