Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1251
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96910
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Found at i:3303 original size:40 final size:40
Alignment explanation
Indices: 3198--3414 Score: 200
Period size: 40 Copynumber: 5.5 Consensus size: 40
3188 TTGAATGCTG
* * * *
3198 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGTTATTAAT
** *
3237 ATCCGGACTAAGAT-CCGAAGG-ATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGTTATTAAT
*
3277 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATATCTAAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTAT-TAAT
* *
3318 TCCGGGTTAAGT-CCG-AGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTATTAAT
* * * *
3356 T-C-GGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTATT-AAT
3395 TCCGGGTTAAG-CCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
3415 ATTGAATGAG
Statistics
Matches: 151, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
36 8 0.05
37 4 0.03
38 21 0.14
39 42 0.28
40 52 0.34
41 24 0.16
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTATTAAT
Found at i:3333 original size:79 final size:80
Alignment explanation
Indices: 3198--3417 Score: 215
Period size: 77 Copynumber: 2.8 Consensus size: 80
3188 TTGAATGCTG
* * **
3198 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTA-AGTGA-CT-ATATCCGGACTAAGATCCGAAGG-
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGA-T-ATCTAAT-TCCGGGTTAAG-TCCGAAGGC
* *
3258 ATTTGTGCGAGTTATTAAT
62 ATTTGTGCGAGATACTAAT
*
3277 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATATCTAATTCCGGGTTAAGTCCG-AGGCCTTT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATATCTAATTCCGGGTTAAGTCCGAAGGCATTT
3341 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* * * * * *
3356 T-C-GGTTAAGTCCCGAAGGCATTCGTGCGAG-TTTTTAAAATCCGGGTTAAGCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATATCT-AATTCCGGGTTAAGTCCGAAGGCATT
3418 GAATGAGTTA
Statistics
Matches: 120, Mismatches: 14, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
76 3 0.03
77 42 0.35
78 10 0.08
79 41 0.34
80 21 0.17
81 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATATCTAATTCCGGGTTAAGTCCGAAGGCATTT
GTGCGAGATACTAAT
Found at i:7987 original size:17 final size:16
Alignment explanation
Indices: 7965--7998 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
7955 AGCAATGGGG
7965 AGTACGAAAATGTCACA
1 AGTACGAAAATGT-ACA
7982 AGTACGAAAATGTACA
1 AGTACGAAAATGTACA
7998 A
1 A
7999 CGATTTGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AGTACGAAAATGTACA
Found at i:10803 original size:40 final size:39
Alignment explanation
Indices: 10719--10860 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 39
10709 TTGAATGCTG
* *
10719 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACT-AT
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAAT
** * * *
10758 ATCCGGACTAAGATCCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCGAAGGCATTTGTGCGAGATACTAAT
*
10799 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGT-CCGAAGGCATTTGTGCGAGATACTAAT
10839 TCCGGGTTAAGTCCGAAGGCAT
1 TCCGGGTTAAGTCCGAAGGCAT
10861 ACTCGGGTTA
Statistics
Matches: 85, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
39 10 0.12
40 63 0.74
41 12 0.14
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:10906 original size:63 final size:64
Alignment explanation
Indices: 10801--10924 Score: 180
Period size: 63 Copynumber: 2.0 Consensus size: 64
10791 TTATTAATTC
* * *
10801 CGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATTCCGGGTTAAGT-CCGAAGGCATACT
1 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATACT
**
10864 CGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TTTTAAAATCCGGGTTAAGTCCCGAAGGCAT
1 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACT-AAATCCGGGTTAAGTCCCGAAGGCAT
10925 TGAATGAGTT
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
62 2 0.04
63 42 0.78
64 10 0.19
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (64 bp):
CGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATACT
Found at i:10946 original size:39 final size:39
Alignment explanation
Indices: 10864--10972 Score: 121
Period size: 40 Copynumber: 2.7 Consensus size: 39
10854 AAGGCATACT
** *
10864 CGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAATC
1 CGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAATC
* *
10904 CGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA-C
1 CGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAATC
* *
10943 CGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CGGGTTAAGTCCCGAAGGCA-TTGAACGAG
10973 GAGCTAAATC
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 25 0.42
40 34 0.58
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (39 bp):
CGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAATC
Found at i:10958 original size:103 final size:103
Alignment explanation
Indices: 10772--10962 Score: 235
Period size: 103 Copynumber: 1.9 Consensus size: 103
10762 GGACTAAGAT
* * * * **
10772 CCGAAGGTATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTA
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACTA
* *
10837 ATTCCGGGTTAAGTCCGAAGGCATACTCGGGTTAAGTC
66 ATACCGGGCTAAGTCCGAAGGCATACTCGGGTTAAGTC
* *
10875 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGAAGG-CATTGAATGAGTTACT
1 CCGAAGGCATTCGTGCGAGTTATT-AAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACT
*
10938 -ATAACCGGGCTATGTCCCGAAGGCA
65 AAT-ACCGGGCTAAGT-CCGAAGGCA
10963 CTTGAACGAG
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
101 2 0.03
102 22 0.30
103 50 0.68
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (103 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACTA
ATACCGGGCTAAGTCCGAAGGCATACTCGGGTTAAGTC
Found at i:25029 original size:94 final size:94
Alignment explanation
Indices: 24853--25039 Score: 261
Period size: 94 Copynumber: 2.0 Consensus size: 94
24843 GATTTTATGA
* *
24853 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACATGCA
1 GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGACCAATGTGATGAACGTGAACATGCA
*
24918 TATATGTGATAAGGCCGAATGGCCAATGT
66 TATATGTGAGAAGGCCGAATGGCCAATGT
* * * *
24947 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGTGATGAACGTGGAA-GTGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGACCAATGTGATGAACGT-GAACATGC
* *
25011 ATATATGTGGCGAA-GCCGAATGGCTAATG
65 ATATATGT-GAGAAGGCCGAATGGCCAATG
25040 CGAAATGTGT
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
94 76 0.93
95 6 0.07
ACGTcount: A:0.34, C:0.11, G:0.29, T:0.26
Consensus pattern (94 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCAGAATGACCAATGTGATGAACGTGAACATGCA
TATATGTGAGAAGGCCGAATGGCCAATGT
Found at i:25034 original size:47 final size:47
Alignment explanation
Indices: 24853--24999 Score: 267
Period size: 47 Copynumber: 3.1 Consensus size: 47
24843 GATTTTATGA
*
24853 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGACCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
24900 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
**
24947 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
24994 GATGAA
1 GATGAA
25000 CGTGGAAGTG
Statistics
Matches: 97, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 97 1.00
ACGTcount: A:0.36, C:0.11, G:0.27, T:0.26
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
Found at i:25077 original size:46 final size:46
Alignment explanation
Indices: 25023--25149 Score: 191
Period size: 46 Copynumber: 2.8 Consensus size: 46
25013 ATATGTGGCG
25023 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
* * *
25069 AAGGCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTA
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
* * * *
25115 AAGCCAAATGGCTAATGTGAGATATGTATGAGATG
1 AAGCCGAATGGCTAATGCGAAATGTGTATGAGATG
25150 TGTATATATA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.35, C:0.09, G:0.32, T:0.24
Consensus pattern (46 bp):
AAGCCGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTA
Found at i:26692 original size:40 final size:40
Alignment explanation
Indices: 26637--26997 Score: 519
Period size: 40 Copynumber: 8.9 Consensus size: 40
26627 TGAGAGTTAT
*
26637 ATATATCCGGGCTAAGTCCCGAAAAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
26677 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
*
26717 ATATATTCGGGCTAAGTCCCGAAGAGCAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCC-----G-AAGAGCATTCGTGCTAGTG
26763 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
26803 ATATATTCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
26843 ATATATTCAGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
26883 ATATATCCGGGCTAAGTCCCGAAGAGTATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* * *
26923 ATATATTCGGGCTATGTCCCGAAGAGCATTCGTGCTGGTG
1 ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
* *
26963 GTATATCCGGGCTAA-ACCTCGAAG-GCATTCGTGCT
1 ATATATCCGGGCTAAGTCC-CGAAGAGCATTCGTGCT
26998 GGAATTATAA
Statistics
Matches: 294, Mismatches: 20, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
39 13 0.04
40 242 0.82
41 1 0.00
45 1 0.00
46 37 0.13
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTG
Found at i:27220 original size:16 final size:16
Alignment explanation
Indices: 27199--27235 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
27189 TAGGTAAGAC
27199 TTAAAGAGAAAATTCG
1 TTAAAGAGAAAATTCG
27215 TTAAAGAGAAAATTCG
1 TTAAAGAGAAAATTCG
27231 TTAAA
1 TTAAA
27236 TGGACCAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.51, C:0.05, G:0.16, T:0.27
Consensus pattern (16 bp):
TTAAAGAGAAAATTCG
Found at i:33382 original size:44 final size:44
Alignment explanation
Indices: 33319--33405 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
33309 CCAAAGCTAT
33319 ATATATATAGCTGAAGCTAT-TTCGATCTT-GCACACTAAGTGCAA
1 ATATATATAGCTGAAGCTATCTT-GAT-TTCGCACACTAAGTGCAA
*
33363 ATATATATAGTTGAAGCTATCTTGATTTCGCACACTAAGTGCA
1 ATATATATAGCTGAAGCTATCTTGATTTCGCACACTAAGTGCA
33406 CATAATTAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
43 2 0.05
44 36 0.90
45 2 0.05
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.33
Consensus pattern (44 bp):
ATATATATAGCTGAAGCTATCTTGATTTCGCACACTAAGTGCAA
Found at i:40354 original size:32 final size:32
Alignment explanation
Indices: 40313--40381 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
40303 TAGTCTCAAA
40313 GTTGGGTTTCAAAGGATAAAAATTTCATCATG
1 GTTGGGTTTCAAAGGATAAAAATTTCATCATG
40345 GTTGGGTTTCAAAGGATAAAAATTTCATCATG
1 GTTGGGTTTCAAAGGATAAAAATTTCATCATG
40377 GTTGG
1 GTTGG
40382 CTTCAAAAGC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.32, C:0.09, G:0.25, T:0.35
Consensus pattern (32 bp):
GTTGGGTTTCAAAGGATAAAAATTTCATCATG
Found at i:42943 original size:17 final size:18
Alignment explanation
Indices: 42916--42949 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
42906 AATTAAATAT
42916 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
42934 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
42950 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:45842 original size:67 final size:67
Alignment explanation
Indices: 45729--45862 Score: 250
Period size: 67 Copynumber: 2.0 Consensus size: 67
45719 TATCATAGAG
*
45729 GTATATCAGTCATTTACCTCGTAGGGCTACAACAATCATTTTATTAAATTGGGGACTAGGTATAC
1 GTATATCAGTCATTTACCTCGTAGGGCTACAACAATCATTTCATTAAATTGGGGACTAGGTATAC
45794 TT
66 TT
*
45796 GTATATCAGTCATTTACCTCGTAGGGCTATAACAATCATTTCATTAAATTGGGGACTAGGTATAC
1 GTATATCAGTCATTTACCTCGTAGGGCTACAACAATCATTTCATTAAATTGGGGACTAGGTATAC
45861 TT
66 TT
45863 ACCGACCCAA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (67 bp):
GTATATCAGTCATTTACCTCGTAGGGCTACAACAATCATTTCATTAAATTGGGGACTAGGTATAC
TT
Found at i:47341 original size:27 final size:26
Alignment explanation
Indices: 47293--47352 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
47283 GCGTGGCTGC
*
47293 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
47320 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
47346 CAGATAT
1 CAGATAT
47353 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:47365 original size:33 final size:32
Alignment explanation
Indices: 47314--47377 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
47304 ACGAAGTCAC
* *
47314 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCGAAGCCACCAGAA
* *
47346 CAGATATATATATATGTGGCGAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCGAAGCCACCAGA
47378 TTGCAGTGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCGAAGCCACCAGAA
Found at i:48072 original size:26 final size:27
Alignment explanation
Indices: 48043--48096 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
48033 TCACACAAGT
*
48043 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
48069 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
48096 T
1 T
48097 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:48129 original size:27 final size:27
Alignment explanation
Indices: 48099--48161 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
48089 GGCAAAATGG
*
48099 TAATTTTACCCCACAAGGGTATCTCAA
1 TAATTCTACCCCACAAGGGTATCTCAA
* * * *
48126 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCCACAAGGGTATCTCAA
48153 TAATTCTAC
1 TAATTCTAC
48162 AACTTATCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (27 bp):
TAATTCTACCCCACAAGGGTATCTCAA
Found at i:55969 original size:23 final size:23
Alignment explanation
Indices: 55939--55987 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
55929 TAAAATTAAC
*
55939 TAAATTTCAACATGTTCGTATTT
1 TAAATTTCAACATGTTCATATTT
55962 TAAATTTCAACATGTTCATATTT
1 TAAATTTCAACATGTTCATATTT
55985 TAA
1 TAA
55988 GTGCACTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (23 bp):
TAAATTTCAACATGTTCATATTT
Found at i:60099 original size:48 final size:45
Alignment explanation
Indices: 59998--60118 Score: 138
Period size: 47 Copynumber: 2.6 Consensus size: 45
59988 TTATTTGTGT
*
59998 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGGCATCGG-C-CATTACGAGA
* *
60044 GCCAGTGTAAGACCATGTCTGGGACATGGTATCGG-CATTGAGACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCCATT---ACGAGA
*
60092 GCTAGTGTAAGACATGTCTAGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
60119 CATTGCCTCG
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
45 4 0.06
46 11 0.17
47 28 0.43
48 22 0.34
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGGCATCGGCCATTACGAGA
Found at i:60259 original size:50 final size:49
Alignment explanation
Indices: 60197--60363 Score: 166
Period size: 49 Copynumber: 3.4 Consensus size: 49
60187 AGATGTGTCG
* *
60197 GTGTAAGACCATGTCTAGGACATGGCATCGACAC-GGATATGTGAGAG-CTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGAT-TGTGAGAGTC-A
* * * *
60247 GTGTAAGACCATGTCTGGGACATGGCATTGGCCTCGATTTTGATAGTCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTGTGAGAGTCA
* *
60296 ATGTAAGACCATGTCTGGGACATGGCATCGA-CTTGA-TG-GATGAG-CTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTGTGA-GAGTC-A
*
60343 GTGTAAAACCATGTCTGGGAC
1 GTGTAAGACCATGTCTGGGAC
60364 CTAGCATTGG
Statistics
Matches: 99, Mismatches: 14, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
46 3 0.03
47 23 0.23
48 4 0.04
49 36 0.36
50 33 0.33
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (49 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTGTGAGAGTCA
Found at i:60371 original size:96 final size:98
Alignment explanation
Indices: 60198--60374 Score: 261
Period size: 96 Copynumber: 1.8 Consensus size: 98
60188 GATGTGTCGG
*
60198 TGTAAGACCATGTCTAGGACATGGCATCGACACGGATATGTGAGAGCTAGTGTAAGACCATGTCT
1 TGTAAGACCATGTCTAGGACATGGCATCGACACGGA-ATGTGAGAGCTAGTGTAAAACCATGTCT
*
60263 GGGACATGGCATTGGCCTCGATTTTGATAGTCAA
65 GGGACATAGCATTGGCCTCGATTTTGATAGTCAA
* **
60297 TGTAAGACCATGTCTGGGACATGGCATCGAC-TTG-ATG-GATGAGCTAGTGTAAAACCATGTCT
1 TGTAAGACCATGTCTAGGACATGGCATCGACACGGAATGTGA-GAGCTAGTGTAAAACCATGTCT
*
60359 GGGACCTAGCATTGGC
65 GGGACATAGCATTGGC
60375 ATTATACCCT
Statistics
Matches: 71, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
95 2 0.03
96 38 0.54
98 1 0.01
99 30 0.42
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (98 bp):
TGTAAGACCATGTCTAGGACATGGCATCGACACGGAATGTGAGAGCTAGTGTAAAACCATGTCTG
GGACATAGCATTGGCCTCGATTTTGATAGTCAA
Found at i:62908 original size:50 final size:49
Alignment explanation
Indices: 62754--62970 Score: 290
Period size: 49 Copynumber: 4.4 Consensus size: 49
62744 ATACTCAATT
* * * *
62754 GCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTA
1 GCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACGTAGTA
*
62803 GCCTACACTTAGTACTACACACGTGACCAATTATCTGGTACACGTAGTA
1 GCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACGTAGTA
** *
62852 GCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTA
1 GCCTGCACTTAGTACTACACACGTGACC-AATTATCTGGTACACGTAGTA
* * * * *
62902 GCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTA
1 GCCTGCACTTAGTACTACACACGTGA-C-CAATTATCTGGTACACGTAGTA
62953 GCCTGCACTTAGTACTAC
1 GCCTGCACTTAGTACTAC
62971 GCATGCGACC
Statistics
Matches: 148, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 71 0.48
50 44 0.30
51 32 0.22
52 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
GCCTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACGTAGTA
Found at i:62924 original size:99 final size:100
Alignment explanation
Indices: 62754--62980 Score: 296
Period size: 99 Copynumber: 2.3 Consensus size: 100
62744 ATACTCAATT
* * ** *
62754 GCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTACACTTAGTACT
1 GCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTACACTTAGTACT
* *
62819 ACACACGTGA-C-CAATTATCTGGTACACGTAGTA
66 ACACACGTGATCACAATTATCGGGTACACATAGTA
* * *
62852 GCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGTAGCCTGCACTTAGTAC
1 GCCTGCACTTAGTACTACACACGCGACC-AACCATCCGATACACGTAGTAGCCTACACTTAGTAC
* * *
62917 TACACACGTGATCACAGTTTTCGGGTACGCATAGTA
65 TACACACGTGATCACAATTATCGGGTACACATAGTA
* *
62953 GCCTGCACTTAGTACTACGCATGCGACC
1 GCCTGCACTTAGTACTACACACGCGACC
62981 TCACAATAGA
Statistics
Matches: 110, Mismatches: 16, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
98 25 0.23
99 42 0.38
100 1 0.01
101 42 0.38
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.25
Consensus pattern (100 bp):
GCCTGCACTTAGTACTACACACGCGACCAACCATCCGATACACGTAGTAGCCTACACTTAGTACT
ACACACGTGATCACAATTATCGGGTACACATAGTA
Found at i:66832 original size:46 final size:46
Alignment explanation
Indices: 66772--67111 Score: 330
Period size: 46 Copynumber: 7.6 Consensus size: 46
66762 TTCGACACGA
* * * *
66772 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGT
* * * *
66818 TGCCATGGTATCTTTCAACCATGGACTTATTCATTTCCCCGTTATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTT-TCTGTCATGT
* * ** *
66865 TGCCATGGTATCTTTCAACCATAGTCTTATTTATGTCCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCAT-TTTCTGTCATGT
66912 TGCCATGGTATCTTTCAACCATGGTC---TT-A-----TG-CA--T
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGT
* *
66946 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTCTC-GTTATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGT
* * * *
66991 TTCCATGGTATCTTTCAACCATGGTTTTATTC-TTTTCATGTTACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTC-TGTCATGT
* *** * *
67037 GGCCATGGTATCTTTCAACCATGGTCTTGCACATTTTGTATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGT
67083 TGCCATGGTATCTTTCAACCATGGTCTTA
1 TGCCATGGTATCTTTCAACCATGGTCTTA
67112 CACATTTCAT
Statistics
Matches: 245, Mismatches: 32, Indels: 34
0.79 0.10 0.11
Matches are distributed among these distances:
34 27 0.11
36 2 0.01
37 3 0.01
38 1 0.00
42 1 0.00
43 2 0.01
44 6 0.02
45 31 0.13
46 95 0.39
47 76 0.31
48 1 0.00
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGT
Found at i:66875 original size:47 final size:47
Alignment explanation
Indices: 66772--66946 Score: 235
Period size: 47 Copynumber: 3.7 Consensus size: 47
66762 TTCGACACGA
* * * * * *
66772 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTT-TCTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCGTCATGT
* *
66818 TGCCATGGTATCTTTCAACCATGGACTTATTCATTTCCCCGTTATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCGTCATGT
* * *
66865 TGCCATGGTATCTTTCAACCATAGTCTTATTTATGTCCCCGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCGTCATGT
*
66912 TGCCATGGTATCTTTCAACCATGGTCTTATGCATT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATT
66947 GCCATGGTAT
Statistics
Matches: 111, Mismatches: 17, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 31 0.28
47 80 0.72
ACGTcount: A:0.19, C:0.24, G:0.15, T:0.42
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCCCCGTCATGT
Found at i:66935 original size:16 final size:16
Alignment explanation
Indices: 66914--66970 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 16
66904 CGTCATGTTG
66914 CCATGGTATCTTTCAA
1 CCATGGTATCTTTCAA
*
66930 CCATGG--TCTTATGCATTG
1 CCATGGTATCTT-T-CA--A
66948 CCATGGTATCTTTCAA
1 CCATGGTATCTTTCAA
66964 CCATGGT
1 CCATGGT
66971 CTTATTCATT
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
14 4 0.12
15 1 0.03
16 15 0.45
18 8 0.24
19 1 0.03
20 4 0.12
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (16 bp):
CCATGGTATCTTTCAA
Found at i:66954 original size:34 final size:34
Alignment explanation
Indices: 66911--66980 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
66901 CCCCGTCATG
66911 TTGCCATGGTATCTTTCAACCATGGTCTTATGCA
1 TTGCCATGGTATCTTTCAACCATGGTCTTATGCA
*
66945 TTGCCATGGTATCTTTCAACCATGGTCTTATTCA
1 TTGCCATGGTATCTTTCAACCATGGTCTTATGCA
66979 TT
1 TT
66981 CTCGTTATGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.20, C:0.23, G:0.16, T:0.41
Consensus pattern (34 bp):
TTGCCATGGTATCTTTCAACCATGGTCTTATGCA
Found at i:67010 original size:79 final size:81
Alignment explanation
Indices: 66864--67020 Score: 246
Period size: 79 Copynumber: 2.0 Consensus size: 81
66854 CCCCGTTATG
*
66864 TTGCCATGGTATCTTTCAACCATAGTCTTATTTATGTCCCCGTCATGTTGCCATGGTATCTTTCA
1 TTGCCATGGTATCTTTCAACCATAGTCTTATTCATGTCCCCGTCATGTTGCCATGGTATCTTTCA
66929 ACCATGGTCTTATGCA
66 ACCATGGTCTTATGCA
* * * *
66945 TTGCCATGGTATCTTTCAACCATGGTCTTATTCAT-T-CTCGTTATGTTTCCATGGTATCTTTCA
1 TTGCCATGGTATCTTTCAACCATAGTCTTATTCATGTCCCCGTCATGTTGCCATGGTATCTTTCA
*
67008 ACCATGGTTTTAT
66 ACCATGGTCTTAT
67021 TCTTTTCATG
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
79 36 0.51
80 1 0.01
81 33 0.47
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.43
Consensus pattern (81 bp):
TTGCCATGGTATCTTTCAACCATAGTCTTATTCATGTCCCCGTCATGTTGCCATGGTATCTTTCA
ACCATGGTCTTATGCA
Found at i:69244 original size:11 final size:11
Alignment explanation
Indices: 69228--69275 Score: 60
Period size: 11 Copynumber: 4.2 Consensus size: 11
69218 CTTTATATAC
69228 TAATAAAATAA
1 TAATAAAATAA
69239 TAATAAAATATA
1 TAATAAAATA-A
* *
69251 TTATTAAAATAT
1 -TAATAAAATAA
69263 TAATAAAATAA
1 TAATAAAATAA
69274 TA
1 TA
69276 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 21 0.68
12 1 0.03
13 9 0.29
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:69258 original size:24 final size:24
Alignment explanation
Indices: 69222--69277 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
69212 TTCTTTCTTT
*
69222 ATATACTAATAAAATAATAATAAA
1 ATATATTAATAAAATAATAATAAA
* *
69246 ATATATTATTAAAATATTAATAAA
1 ATATATTAATAAAATAATAATAAA
69270 ATAATATT
1 AT-ATATT
69278 TATCTAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 23 0.82
25 5 0.18
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
ATATATTAATAAAATAATAATAAA
Found at i:74241 original size:16 final size:17
Alignment explanation
Indices: 74220--74254 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
74210 TCCTTAAGCG
*
74220 CCCAACCTACAATC-GT
1 CCCAACATACAATCAGT
74236 CCCAACATACAATCAGT
1 CCCAACATACAATCAGT
74253 CC
1 CC
74255 ATCATTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.34, C:0.43, G:0.06, T:0.17
Consensus pattern (17 bp):
CCCAACATACAATCAGT
Found at i:82903 original size:29 final size:28
Alignment explanation
Indices: 82848--82962 Score: 113
Period size: 29 Copynumber: 4.0 Consensus size: 28
82838 GTGAGCATGA
* * * *
82848 ATATGAATGTGATTGGTCCTAACGGGCT
1 ATATAAATGTGATTGGGCCTAATGGGCC
82876 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
*** *
82905 ATATACCGGTGATTTGGGCCTAATAGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
82934 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
82962 A
1 A
82963 AATACAGGTA
Statistics
Matches: 71, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
28 26 0.37
29 45 0.63
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:86606 original size:20 final size:19
Alignment explanation
Indices: 86560--86606 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
86550 TTTTGTTTTT
* *
86560 TTTCTTTTCTTCCTACCGA
1 TTTCTATTCTTCCTACCAA
86579 TTTCTATTCTTCTCTACACAA
1 TTTCTATTCTTC-CTAC-CAA
86600 TTT-TATT
1 TTTCTATT
86607 TGTTTTACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 11 0.46
20 8 0.33
21 5 0.21
ACGTcount: A:0.17, C:0.26, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTCTATTCTTCCTACCAA
Found at i:88191 original size:14 final size:14
Alignment explanation
Indices: 88172--88198 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
88162 AATGATGATG
88172 AAGAAAGAAAAAGA
1 AAGAAAGAAAAAGA
88186 AAGAAAGAAAAAG
1 AAGAAAGAAAAAG
88199 CTCTCATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (14 bp):
AAGAAAGAAAAAGA
Found at i:88277 original size:58 final size:57
Alignment explanation
Indices: 88172--88304 Score: 205
Period size: 58 Copynumber: 2.3 Consensus size: 57
88162 AATGATGATG
* *
88172 AAGAAAGAA-AAAGAAAGAAAGAAAAAGCTCTCATGTTGTTCTTGGCCGAATAAAAGA
1 AAGAAA-AAGAAAGAAAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAAAAGA
*
88229 AAGAAAAAGAAAGAAAAAAAAAAGAAAGCTCTCATGTTGTTCTTGGCCGAATAGAAGA
1 AAGAAAAAGAAAGAAAAAAAAAA-AAAGCTCTCATGTTGTTCTTGGCCGAATAAAAGA
*
88287 AAGAAAAAGAAGGAAAAA
1 AAGAAAAAGAAAGAAAAA
88305 GAGCTTTGAG
Statistics
Matches: 70, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
56 2 0.03
57 18 0.26
58 50 0.71
ACGTcount: A:0.55, C:0.09, G:0.21, T:0.15
Consensus pattern (57 bp):
AAGAAAAAGAAAGAAAAAAAAAAAAAGCTCTCATGTTGTTCTTGGCCGAATAAAAGA
Found at i:89544 original size:40 final size:41
Alignment explanation
Indices: 89441--89617 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 41
89431 GGATTGATAA
* ** * *
89441 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
89481 CCGGGCTAAG-CCC-AAGGCATTTGTGCGAGTTACCATA-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
* *
89519 CTGGGCTAAGTCCCGAAGGCATTTGTTCGAGTTA-C-TAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
*
89558 CCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
* *
89599 CCGGGCTATGTCCCAAAGG
1 CCGGGCTAAGTCCCGAAGG
89618 TATTCGAGTG
Statistics
Matches: 119, Mismatches: 11, Indels: 14
0.83 0.08 0.10
Matches are distributed among these distances:
38 30 0.25
39 9 0.08
40 77 0.65
41 1 0.01
42 2 0.02
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.26
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACCATAGT
Found at i:96198 original size:52 final size:51
Alignment explanation
Indices: 96129--96261 Score: 155
Period size: 53 Copynumber: 2.5 Consensus size: 51
96119 GAAGGTAAAT
96129 GATATGAAGAATGAAAAAGAAAGAAAAAAAA-AAG-ATCTCATGTTGTTCTT-GCC
1 GATA-GAAGAA-GAAAAAGAAAGAAAAAAAAGAAGCATCTCA---TGTTCTTGGCC
*
96182 GAATAGAAGAAGAAAAAGAAAGAAAAAAAAAGAAGCTTCTCATGTTCTTGGCC
1 G-ATAGAAGAAGAAAAAGAAAG-AAAAAAAAGAAGCATCTCATGTTCTTGGCC
*
96235 GATAGAAGAAAGAAAAAGAAGGAAAAA
1 GATAGAAG-AAGAAAAAGAAAGAAAAA
96262 GAGCTTTGAG
Statistics
Matches: 72, Mismatches: 2, Indels: 13
0.83 0.02 0.15
Matches are distributed among these distances:
52 30 0.42
53 31 0.43
54 6 0.08
55 5 0.07
ACGTcount: A:0.54, C:0.08, G:0.21, T:0.17
Consensus pattern (51 bp):
GATAGAAGAAGAAAAAGAAAGAAAAAAAAGAAGCATCTCATGTTCTTGGCC
Done.