genome.fa.s67.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1118
Parameters: 2 7 7 80 10 50 1000
Length:  48467

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3351--3575	40	5.7	40	86	5	278	25	28	22	24	2.00
3353--3575	119	1.9	120	84	6	301	25	27	22	24	2.00
4702--4821	56	2.1	56	98	0	231	22	23	9	45	1.81
11288--11511	40	5.7	40	85	6	287	25	28	21	24	1.99
11288--11511	79	2.8	79	85	5	292	25	28	21	24	1.99
12645--12754	56	2.0	56	98	0	211	21	20	10	47	1.79
15233--15365	37	3.6	37	83	0	158	21	12	24	42	1.87
17049--17200	67	2.2	69	80	10	179	32	16	28	21	1.95
20747--20777	16	1.9	16	93	0	53	87	0	12	0	0.55
20917--20945	15	1.9	15	100	0	58	41	0	3	55	1.17
21431--21637	43	4.8	43	94	0	351	24	19	31	24	1.98
21417--21660	43	5.6	42	88	4	319	25	19	29	25	1.98
21711--21791	31	2.5	31	82	4	90	62	18	2	16	1.43
27713--27936	9	24.6	9	75	11	143	38	0	12	47	1.48
27713--27936	18	12.3	18	76	11	161	38	0	12	47	1.48
27689--27908	114	1.9	112	86	3	307	38	0	12	47	1.48
27784--27967	43	4.3	43	68	19	121	38	1	13	47	1.50
28040--28095	15	3.8	15	80	20	73	55	0	0	44	0.99
28272--28339	24	2.8	24	86	8	102	45	7	19	27	1.76
28427--29340	373	2.5	372	98	0	1783	38	10	14	36	1.81
32406--32658	134	1.9	133	97	0	479	51	18	10	19	1.74
33226--33286	19	3.2	19	88	0	95	14	29	31	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34428--34573	35	4.2	35	91	1	222	18	9	30	41	1.82
34406--34556	70	2.2	70	87	0	221	19	9	28	42	1.82
38799--39023	40	5.7	40	86	5	278	25	28	22	24	2.00
38801--39023	119	1.9	120	84	6	301	25	27	22	24	2.00
40151--40270	56	2.1	56	98	0	231	22	23	9	45	1.81
46697--46943	115	2.1	117	81	10	283	25	26	21	26	1.99
46711--46950	40	6.1	40	81	10	273	25	27	22	25	2.00
48078--48197	56	2.1	56	98	0	231	22	23	9	45	1.81

Tables:   1

The End!