Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold340
Parameters: 2 7 7 80 10 50 1000
Length:  87735

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2470--2609
41
3.6
39
80
14
155
25
27
21
25
1.99
20182--20254
29
2.5
29
86
4
94
26
30
16
27
1.97
23902--24093
24
8.0
24
89
1
278
28
20
21
28
1.98
24144--24209
20
3.3
20
93
0
114
31
21
12
34
1.90
24144--24198
11
5.4
11
70
16
55
30
20
12
36
1.90
33255--33438
39
4.6
41
82
11
206
24
22
27
25
2.00
33255--33438
79
2.3
80
83
8
225
24
22
27
25
2.00
33308--33471
78
2.1
79
83
7
201
26
21
27
25
1.99
41208--41284
39
1.9
39
86
2
109
27
22
27
23
1.99
41169--41312
40
3.6
39
78
7
132
25
23
27
23
2.00
41168--41318
79
1.9
80
81
6
182
25
23
27
23
2.00
43003--43145
24
6.0
24
88
4
209
28
20
21
28
1.98
43196--43261
20
3.3
20
93
0
114
31
21
12
34
1.90
43196--43250
11
5.4
11
70
16
55
30
20
12
36
1.90
43298--43345
25
1.9
25
86
0
69
25
16
25
33
1.96
46588--46627
20
2.0
20
100
0
80
30
25
5
40
1.77
50790--51015
40
5.7
40
86
4
253
26
25
21
26
1.99
50790--51015
80
2.8
80
83
6
280
26
25
21
26
1.99
50790--51008
120
1.8
120
82
7
284
26
25
20
27
1.99
55695--55797
38
2.7
38
87
3
136
23
22
25
29
1.99
55795--55875
42
1.9
43
87
2
119
12
25
32
29
1.92
64941--64983
20
2.2
20
83
4
52
23
0
9
67
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66764--66817
19
2.9
19
72
22
51
66
1
12
18
1.33
66801--66839
19
2.0
20
85
5
53
56
12
10
20
1.65
77597--77781
79
2.3
81
84
7
236
25
27
22
24
2.00
77597--77781
40
4.7
40
83
7
234
25
27
22
24
2.00
85368--85514
40
3.7
40
82
7
183
25
27
22
24
2.00
85368--85514
79
1.9
80
84
7
201
25
27
22
24
2.00

Tables:   1

The End!