Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2116
Parameters: 2 7 7 80 10 50 1000
Length:  76946

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4820--5045
40
5.7
40
88
4
289
26
26
21
25
1.99
8112--8172
30
2.0
30
87
0
86
29
22
6
40
1.79
11892--12046
42
3.7
41
80
3
175
31
14
24
29
1.95
14118--14425
29
10.6
29
75
2
152
37
19
16
26
1.93
14142--14461
29
11.0
29
72
7
148
37
17
17
27
1.93
24612--24646
17
2.1
17
94
5
63
25
0
14
60
1.35
25041--25078
19
2.0
19
100
0
76
21
5
26
47
1.71
27441--27657
39
5.6
39
87
1
294
28
26
22
22
1.99
30462--30514
23
2.4
22
76
20
56
9
18
1
69
1.25
32867--32897
6
5.3
6
92
7
55
83
0
0
16
0.64
32863--32897
12
3.2
11
88
11
54
82
0
0
17
0.66
40055--40142
39
2.3
39
91
0
140
31
25
18
25
1.97
40120--40164
22
2.0
22
95
0
81
35
24
13
26
1.92
40142--40224
39
2.1
39
90
0
130
32
24
19
24
1.97
43611--43687
26
3.0
26
76
0
91
28
20
18
32
1.96
43679--43927
29
8.6
29
83
4
225
24
16
21
37
1.93
43683--43927
87
2.8
87
83
1
267
24
16
21
37
1.93
44097--44142
22
2.1
21
84
15
58
63
2
15
19
1.41
44556--44675
50
2.3
50
82
4
141
33
16
13
36
1.88
51682--51884
38
5.4
38
89
2
302
22
20
24
32
1.98
51682--51884
75
2.7
76
89
3
293
22
20
24
32
1.98
51861--52035
43
4.1
43
88
1
246
13
23
32
30
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54061--54115
27
2.0
27
100
0
110
25
38
7
29
1.83
59158--59216
10
5.7
10
78
7
55
47
15
23
13
1.81
59161--59216
21
2.7
21
88
0
85
46
16
23
14
1.83
64432--64607
46
3.8
46
79
12
216
20
21
29
28
1.98
64429--64600
93
1.8
93
96
0
317
20
21
29
27
1.98
71988--72114
46
2.8
46
93
1
211
19
22
29
29
1.98

Tables:   1

The End!