Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2839
Parameters: 2 7 7 80 10 50 1000
Length:  75960

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--349
175
2.0
174
97
1
664
38
8
12
40
1.73
19993--20032
19
2.1
19
95
0
71
20
10
25
45
1.81
23852--23907
24
2.2
26
84
12
73
48
1
3
46
1.30
23928--24014
26
3.2
26
74
14
77
51
3
2
42
1.31
31812--31855
16
2.7
16
82
3
52
68
9
4
18
1.34
32535--32591
29
2.0
29
86
6
80
21
5
7
66
1.36
34770--34807
12
3.0
13
76
7
51
23
0
5
71
1.07
37279--37832
183
3.0
183
94
1
925
35
14
25
24
1.93
40759--40824
32
2.1
32
97
0
123
34
18
6
40
1.75
41015--41059
22
2.0
22
100
0
90
53
4
4
37
1.41
41585--41619
11
3.1
11
95
4
61
31
0
0
68
0.90
44229--44253
3
8.3
3
100
0
50
32
0
0
68
0.90
44895--45127
118
1.9
119
82
2
288
46
10
15
27
1.78
45513--45557
22
2.1
22
87
4
65
57
0
4
37
1.19
47205--47352
44
3.3
44
67
10
118
23
20
20
35
1.96
47216--47393
92
1.9
93
86
3
252
24
20
19
35
1.96
55663--55709
19
2.4
20
85
3
60
46
6
19
27
1.74
57650--57707
15
3.8
15
88
2
89
34
0
13
51
1.42
58090--58164
21
3.5
22
81
9
91
13
20
28
38
1.90
62460--62694
120
1.9
121
83
4
303
47
10
15
26
1.78
62798--62852
20
2.7
21
77
11
69
58
3
9
29
1.46
62927--62968
22
1.9
22
85
9
59
64
7
0
28
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63316--63358
16
2.6
17
82
14
54
55
0
11
32
1.36
73539--73746
87
2.4
88
88
3
316
24
21
29
25
1.99
73539--73746
43
4.8
43
91
2
319
24
21
29
25
1.99

Tables:   1

The End!