genome.fa.s675.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2400
Parameters: 2 7 7 80 10 50 1000
Length:  71838

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5273--5455	79	2.3	81	83	7	223	24	27	22	24	2.00
5252--5455	40	5.1	40	81	8	229	24	27	22	25	2.00
8074--8113	21	1.9	20	90	10	62	47	20	5	27	1.70
13105--13203	49	2.0	51	96	4	184	16	25	14	44	1.85
21498--21556	6	10.2	6	79	17	54	49	15	3	32	1.61
21553--21580	14	2.0	14	100	0	56	71	0	14	14	1.15
22082--22106	5	5.0	5	100	0	50	80	0	0	20	0.72
31485--31545	31	2.0	30	96	3	113	19	19	19	40	1.91
32132--32168	18	2.1	18	100	0	74	21	40	16	21	1.91
32656--32707	26	2.0	26	100	0	104	34	15	26	23	1.94
33661--33722	30	2.1	30	100	0	124	17	19	24	38	1.93
35839--35896	29	2.0	29	89	0	89	32	18	6	41	1.78
38270--38298	14	2.1	14	100	0	58	27	13	6	51	1.66
42456--42524	21	3.3	21	87	2	95	11	24	8	55	1.64
44884--44977	18	5.4	18	92	3	131	28	9	25	36	1.87
53233--53260	14	2.0	14	100	0	56	14	14	0	71	1.15
53257--53330	6	13.2	6	78	18	72	33	1	17	47	1.56
53258--53334	11	7.5	11	79	15	94	33	1	18	46	1.57
53252--53330	30	2.6	30	83	13	99	32	2	16	48	1.60
53272--53333	5	12.0	5	76	17	56	33	1	17	46	1.58
53258--53334	20	3.8	21	83	16	108	33	1	18	46	1.57
61502--61563	32	1.9	32	96	0	115	38	22	9	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68841--68868	13	2.2	13	100	0	56	28	7	14	50	1.69

Tables:   1

The End!