Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2239
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 64733
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Found at i:3637 original size:20 final size:22
Alignment explanation
Indices: 3597--3637 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
3587 AATACGTAAA
3597 AAGGATTGAATTATAAAACTAC
1 AAGGATTGAATTATAAAACTAC
*
3619 AAGG-TTGAA-TATTAAACTA
1 AAGGATTGAATTATAAAACTA
3638 GAGGGACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.49, C:0.07, G:0.15, T:0.29
Consensus pattern (22 bp):
AAGGATTGAATTATAAAACTAC
Found at i:10450 original size:56 final size:56
Alignment explanation
Indices: 10390--10529 Score: 199
Period size: 56 Copynumber: 2.5 Consensus size: 56
10380 CCAGACAGGG
* * * *
10390 TCTTACTCACACACATATATTAGAGTCACATATCGATGCCAACGTATTAAACGTGA
1 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATATTAAACGTGA
* *
10446 TCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACATATTAAACGTGG
1 TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATATTAAACGTGA
* *
10502 TCTTACTCGCACATCACATATCGGAATC
1 TCTTACTCGCACA-CATATATCAGAATC
10530 CTATGTCATG
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
56 63 0.83
57 13 0.17
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.28
Consensus pattern (56 bp):
TCTTACTCGCACACATATATCAGAATCACATATCGATGCCAACATATTAAACGTGA
Found at i:10948 original size:12 final size:12
Alignment explanation
Indices: 10925--10960 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
10915 TTTAATTATG
10925 TTATA-ATA-TA
1 TTATATATATTA
10935 TTATATATATTA
1 TTATATATATTA
10947 TTATATATATTA
1 TTATATATATTA
10959 TT
1 TT
10961 TACTATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 5 0.21
11 3 0.12
12 16 0.67
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATATATATTA
Found at i:10967 original size:19 final size:22
Alignment explanation
Indices: 10925--10967 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
10915 TTTAATTATG
*
10925 TTATAATATATTATATATATTA
1 TTATAATATATTATATATACTA
10947 TTAT-ATATATTAT-T-TACTA
1 TTATAATATATTATATATACTA
10966 TT
1 TT
10968 TTACATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 6 0.30
20 1 0.05
21 9 0.45
22 4 0.20
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (22 bp):
TTATAATATATTATATATACTA
Found at i:10975 original size:21 final size:21
Alignment explanation
Indices: 10930--10975 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
10920 TTATGTTATA
*
10930 ATATATTATATATATTATTAT
1 ATATATTATATATATTATTAC
*
10951 ATATATTATTTACTATT-TTAC
1 ATATATTATATA-TATTATTAC
10972 ATAT
1 ATAT
10976 TTAACCTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (21 bp):
ATATATTATATATATTATTAC
Found at i:12095 original size:30 final size:30
Alignment explanation
Indices: 12061--12121 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
12051 TTCCCGAGCC
12061 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
* * * * *
12091 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
12121 T
1 T
12122 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.43, C:0.03, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGAAAAAGTT
Found at i:12707 original size:68 final size:64
Alignment explanation
Indices: 12619--12899 Score: 235
Period size: 64 Copynumber: 4.3 Consensus size: 64
12609 CGGGATGCAT
12619 ACCATGT-GTACAAGAGAGCTACAAGACATTACGAGGTAGCTAGGTCGCATGGGTGATACTAAGT
1 ACCATGTAG-ACAAGAGAGCTAC--GACA-TA-GAGGTAGCTAGGTCGCATGGGTGATACTAAGT
12683 GTAC
61 GTAC
* ** * * *
12687 ACTATGTAGACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGGGTGATACTATGTGTAC
1 ACCATGTAGACAAGAGAGCTACGACATAGAGGTAGCTAGGTCGCATGGGTGATACTAAGTGTAC
* * * * * * * * * *
12751 ACCATGTAGACAAGAGAGCTACGAGATAAATGTAGCTAGGTTGCATGTGTGGTTCCAGGTGAAGG
1 ACCATGTAGACAAGAGAGCTACGACATAGAGGTAGCTAGGTCGCATGGGTGATACTAAGT---GT
12816 AC
63 AC
* * * * * * * * *
12818 ACCATGTAAACAAAAGAGCTACAAGATA-AAGTGGCTAGGTCACATGGGTGGTACTAAGTGTTC
1 ACCATGTAGACAAGAGAGCTACGACATAGAGGTAGCTAGGTCGCATGGGTGATACTAAGTGTAC
12881 ACCATGT-GTACAAGAGAGC
1 ACCATGTAG-ACAAGAGAGC
12900 CAAAATTATG
Statistics
Matches: 177, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
63 18 0.10
64 84 0.47
65 2 0.01
66 25 0.14
67 28 0.16
68 19 0.11
69 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.28, T:0.23
Consensus pattern (64 bp):
ACCATGTAGACAAGAGAGCTACGACATAGAGGTAGCTAGGTCGCATGGGTGATACTAAGTGTAC
Found at i:12733 original size:64 final size:63
Alignment explanation
Indices: 12654--12899 Score: 269
Period size: 64 Copynumber: 3.8 Consensus size: 63
12644 ACATTACGAG
* *
12654 GTAGCTAGGTCGCATGGGTGATACTAAGTGTACACTATGTAGACAAGAGAGCTACGGGATATAT
1 GTAGCTAGGTCGCATGGGTGATACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATA-AT
*
12718 GTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAAAT
1 GTAGCTAGGTCGCATGGGTGATACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGAT-AAT
* * * * * * * * * *
12782 GTAGCTAGGTTGCATGTGTGGTTCCAGGTGAAGGACACCATGTAAACAAAAGAGCTACAAGATAA
1 GTAGCTAGGTCGCATGGGTGATACTAAGT---GTACACCATGTAGACAAGAGAGCTACGAGATAA
*
12847 A
63 T
* * * *
12848 GTGGCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 GTAGCTAGGTCGCATGGGTGATACTAAGTGTACACCATGTAG-ACAAGAGAGC
12900 CAAAATTATG
Statistics
Matches: 152, Mismatches: 25, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
63 18 0.12
64 82 0.54
65 1 0.01
66 24 0.16
67 27 0.18
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.24
Consensus pattern (63 bp):
GTAGCTAGGTCGCATGGGTGATACTAAGTGTACACCATGTAGACAAGAGAGCTACGAGATAAT
Found at i:16919 original size:131 final size:131
Alignment explanation
Indices: 16682--17075 Score: 592
Period size: 131 Copynumber: 3.0 Consensus size: 131
16672 TAATTATTCA
* * * ** * *
16682 TTTAAAAATTCTTAAAAACGAAGGAAATGTTCGATGTTTGGCAATTCAGGAAATCGTCGTTCCCT
1 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGT-G--CCCT
* * *
16747 ATCGTGCTGGGTTGCGATTTCCCGTTCGTTCAAAACAATCAAATATTCCTTTGGAATATCACTCA
63 ATCGTGCTGGGTTGCGATTTCCTGTTTGTTCAAAACAATCAAATATTCCTTTGGAATTTCACTCA
16812 TGTC
128 TGTC
*
16816 TTTAAAAACTCTTCAAAATGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
*
16881 GTGCTAGGTTGCGATTTCCTGTTTGTTCAAAACAATCAAATATTCCTTTGGAATTTCACTCATGT
66 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAACAATCAAATATTCCTTTGGAATTTCACTCATGT
16946 C
131 C
16947 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
1 TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
* * * * * *
17012 -TGCTGGGTTGCGATCTCCTGTTTGTTCGAAATAACCGAATATTCCTTTAGAATTTCACTCATGT
66 GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAACAATCAAATATTCCTTTGGAATTTCACTCATGT
17076 TCTCTAAATT
Statistics
Matches: 240, Mismatches: 20, Indels: 4
0.91 0.08 0.02
Matches are distributed among these distances:
130 57 0.24
131 133 0.55
133 1 0.00
134 49 0.20
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.34
Consensus pattern (131 bp):
TTTAAAAACTCTTCAAAACGAAGGTAATACTCGATGTTTGGCAATTCGGGGAATCGTGCCCTATC
GTGCTGGGTTGCGATTTCCTGTTTGTTCAAAACAATCAAATATTCCTTTGGAATTTCACTCATGT
C
Found at i:17609 original size:30 final size:30
Alignment explanation
Indices: 17575--17693 Score: 211
Period size: 30 Copynumber: 4.0 Consensus size: 30
17565 TAAATCTTAG
17575 CCTTTTCCACCACCAACTCCACTAGCCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACT
17605 CCTTTTCCACCACCAACTCCACTAGCCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACT
* *
17635 CCTTTTCCACCAACAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACT
*
17665 CCTTTTCCACCACCAAATCCACTAGCCAC
1 CCTTTTCCACCACCAACTCCACTAGCCAC
17694 ACTTGCTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 85 1.00
ACGTcount: A:0.26, C:0.49, G:0.03, T:0.22
Consensus pattern (30 bp):
CCTTTTCCACCACCAACTCCACTAGCCACT
Found at i:17694 original size:30 final size:30
Alignment explanation
Indices: 17575--17739 Score: 208
Period size: 30 Copynumber: 5.5 Consensus size: 30
17565 TAAATCTTAG
*
17575 CCTTTTCCACCACCAACTCCACTAGCCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACA
*
17605 CCTTTTCCACCACCAACTCCACTAGCCACT
1 CCTTTTCCACCACCAACTCCACTAGCCACA
*
17635 CCTTTTCCACCAACAACTCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
*
17665 CCTTTTCCACCACCAAATCCACTAGCCACA
1 CCTTTTCCACCACCAACTCCACTAGCCACA
* ** * *
17695 -CTTGCTCCATTACCTACTCCACTAACCACA
1 CCTT-TTCCACCACCAACTCCACTAGCCACA
*
17725 -CTTGCTCCACCACCA
1 CCTT-TTCCACCACCA
17740 CTTGTACCTA
Statistics
Matches: 121, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 3 0.02
30 118 0.98
ACGTcount: A:0.26, C:0.48, G:0.04, T:0.22
Consensus pattern (30 bp):
CCTTTTCCACCACCAACTCCACTAGCCACA
Found at i:18255 original size:23 final size:23
Alignment explanation
Indices: 18228--18356 Score: 79
Period size: 23 Copynumber: 5.6 Consensus size: 23
18218 CTTTTTTTGT
18228 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATATTA
* *
18251 TATTA-TATATATTCTT-TTAATA
1 TATTATTATAT-TTCTTAATATTA
* *
18273 TATTAGGTATATTT-TAAAT-TCTA
1 TATTA-TTATATTTCTTAATAT-TA
* * * *
18296 TATTACGTATATATATT-ATACTA
1 TATTA-TTATATTTCTTAATATTA
* *
18319 TTTTATGTATATATCTTTAATATTA
1 TATTAT-TATATTTC-TTAATATTA
18344 TATTATTATATTT
1 TATTATTATATTT
18357 TTTTTCTACA
Statistics
Matches: 81, Mismatches: 15, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
22 15 0.19
23 42 0.52
24 14 0.17
25 10 0.12
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (23 bp):
TATTATTATATTTCTTAATATTA
Found at i:18349 original size:25 final size:25
Alignment explanation
Indices: 18234--18440 Score: 105
Period size: 25 Copynumber: 8.5 Consensus size: 25
18224 TTGTTATTAT
*
18234 TATATTTCTTAATATTATATTA--TA
1 TATATTT-TTAATACTATATTATGTA
* *
18258 TATATTCTTT--TAATATATTA-G-G
1 TATATT-TTTAATACTATATTATGTA
* * *
18280 TATATTTTAAATTCTATATTACGTA
1 TATATTTTTAATACTATATTATGTA
* *
18305 TATA-TATT-ATACTATTTTATGTA
1 TATATTTTTAATACTATATTATGTA
* *
18328 TATATCTTTAATATTATATTAT-TA
1 TATATTTTTAATACTATATTATGTA
* ** * *
18352 TATTTTTTTTCTACATGTTATCTTATGTG
1 TA--TATTTT-TA-ATACTATATTATGTA
*
18381 TATA-TCTT-A-ACTATATTATGTA
1 TATATTTTTAATACTATATTATGTA
* *
18403 TGTATTTTTAACACTATATTATGTA
1 TATATTTTTAATACTATATTATGTA
*
18428 CATATTTTTAATA
1 TATATTTTTAATA
18441 TTATCACGTA
Statistics
Matches: 136, Mismatches: 31, Indels: 31
0.69 0.16 0.16
Matches are distributed among these distances:
21 2 0.01
22 27 0.20
23 28 0.21
24 18 0.13
25 39 0.29
26 6 0.04
27 3 0.02
28 10 0.07
29 3 0.02
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.56
Consensus pattern (25 bp):
TATATTTTTAATACTATATTATGTA
Found at i:18623 original size:7 final size:8
Alignment explanation
Indices: 18588--18630 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
18578 TATTAATTAT
*
18588 TATTCTAA
1 TATTTTAA
*
18596 TATTTTGA
1 TATTTTAA
18604 TATTTTAA
1 TATTTTAA
18612 TATTTT-A
1 TATTTTAA
*
18619 TATTTTAT
1 TATTTTAA
18627 TATT
1 TATT
18631 CACATCATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
7 7 0.23
8 23 0.77
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:18623 original size:15 final size:16
Alignment explanation
Indices: 18588--18630 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
18578 TATTAATTAT
*
18588 TATTCTAATATTTTGA
1 TATTTTAATATTTTGA
18604 TATTTTAATATTTT-A
1 TATTTTAATATTTTGA
*
18619 TATTTTATTATT
1 TATTTTAATATT
18631 CACATCATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TATTTTAATATTTTGA
Found at i:31828 original size:47 final size:47
Alignment explanation
Indices: 31777--32140 Score: 586
Period size: 47 Copynumber: 7.7 Consensus size: 47
31767 TTAGGATTCT
* * *
31777 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
31824 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
31871 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTTATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
31918 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
31965 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
32012 ATGTAATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
32059 ATGTGATGAATGTGAAAGTGTATATATGTGACAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
32106 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32141 TCCCGAAGGG
Statistics
Matches: 297, Mismatches: 19, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
46 1 0.00
47 296 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:31852 original size:25 final size:25
Alignment explanation
Indices: 31824--31902 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
31814 CTAATGGCCG
31824 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
31849 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
31871 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
31896 ATGTGAT
1 ATGTGAT
31903 AAGGCCTTAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:32309 original size:37 final size:37
Alignment explanation
Indices: 32259--32411 Score: 236
Period size: 37 Copynumber: 4.1 Consensus size: 37
32249 CCGAGCTCTA
32259 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
32296 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* *
32333 AAGACCCGATGACTATGTGTGGGGATTTTGTCTGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* ** *
32370 AAGACCCGATAACTTTGTG-GGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGG-GATTTTGTCCGGGT
32407 AAGAC
1 AAGAC
32412 TTCGTAATAA
Statistics
Matches: 109, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
36 3 0.03
37 106 0.97
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:34951 original size:14 final size:14
Alignment explanation
Indices: 34932--34958 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
34922 CGCTGAGGTA
34932 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
34946 TTTTCAATTTCTG
1 TTTTCAATTTCTG
34959 GTCTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:34954 original size:89 final size:89
Alignment explanation
Indices: 34793--35301 Score: 903
Period size: 89 Copynumber: 5.7 Consensus size: 89
34783 TGTTCCAAAG
* *
34793 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGTTGAGGTATTTTCAATTTCTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
34858 TTCCAATTTCTGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
*
34882 ATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
34947 TTTCAATTTCTGGTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
*
34971 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
35036 TTTCAATTTCAT-CTCTTCAAAAAA
66 TTTCAATTTC-TGCTCTTCAAAAAA
* *
35060 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
35125 TTCCAATTTCTGCTCTTCAAAAAAA
66 TTTCAATTTCTGCTCTTC-AAAAAA
35150 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
35215 TTTCAATTTCTGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
*
35239 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTG
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
35302 CTCTTCAAAA
Statistics
Matches: 401, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
88 1 0.00
89 313 0.78
90 87 0.22
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (89 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
TTTCAATTTCTGCTCTTCAAAAAA
Found at i:35092 original size:178 final size:178
Alignment explanation
Indices: 34793--35538 Score: 999
Period size: 178 Copynumber: 4.2 Consensus size: 178
34783 TGTTCCAAAG
* *
34793 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGTTGAGGTATTTTCAATTTCTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
* *
34858 TTCCAATTTCTGCTCTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
66 TTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
*
34923 GCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGGTCTTCAAAAAA
131 GCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTCAAAAAA
*
34971 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
35036 TTTCAATTTCAT-CTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
66 TTTCAATTTC-TGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
* * *
35100 CGCTGAGGTATTTTCGATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAA
130 CGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTC-AAAAAA
35150 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
35215 TTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
66 TTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
35280 GCTGAGGTA---T---TTTC-G-------ATTTCTGCTCTTCAAAAAA
131 GCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTCAAAAAA
*
35314 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG-T
* * *
35379 TTTTCAATTTATGCTTTTCAAATTCTGCTTTTTAAAAAATCAACTCATATTGCTAGAGGTGAGTT
65 TTTTCAATTTCTGC---TC----T-T-C----AAAAAAATCAACTCATATTGCGAGAGGTGAGTT
** * **
35444 GAGCCTC-GGGTCACATG-TCGAGGTATTTTCAAAATCTGTTTTTCAAATTAAG-T-TTCAAAAA
117 GAGCCTCAGGG-CAC--GCT-GAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTCAAAAA
35505 A
178 A
* *
35506 ACCAACTCATATGGCGAGAGGTGAGTTGAGCCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
35539 TAGCTCACGT
Statistics
Matches: 512, Mismatches: 21, Indels: 56
0.87 0.04 0.10
Matches are distributed among these distances:
164 68 0.13
165 27 0.05
168 2 0.00
172 2 0.00
173 5 0.01
174 1 0.00
176 1 0.00
177 3 0.01
178 203 0.40
179 144 0.28
180 7 0.01
183 1 0.00
186 2 0.00
187 1 0.00
192 40 0.08
193 1 0.00
194 4 0.01
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (178 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
TTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
GCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTCAAAAAA
Found at i:35219 original size:14 final size:14
Alignment explanation
Indices: 35200--35226 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
35190 CGCTGAGGTA
35200 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
35214 TTTTCAATTTCTG
1 TTTTCAATTTCTG
35227 CTCTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:35337 original size:75 final size:75
Alignment explanation
Indices: 35214--35373 Score: 311
Period size: 75 Copynumber: 2.1 Consensus size: 75
35204 CAATTTCTGT
35214 TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
1 TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
35279 CGCTGAGGTA
66 CGCTGAGGTA
*
35289 TTTTCGATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
1 TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
35354 CGCTGAGGTA
66 CGCTGAGGTA
35364 TTTTCAATTT
1 TTTTCAATTT
35374 TTGTTTTTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 83 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (75 bp):
TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
CGCTGAGGTA
Found at i:35396 original size:15 final size:15
Alignment explanation
Indices: 35364--35411 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
35354 CGCTGAGGTA
* *
35364 TTTTCAATTTTTGTT
1 TTTTCAATTTATGCT
35379 TTTTCAATTTATGC-
1 TTTTCAATTTATGCT
* *
35393 TTTTCAAATTCTGCT
1 TTTTCAATTTATGCT
35408 TTTT
1 TTTT
35412 AAAAAATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.17, C:0.12, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTCAATTTATGCT
Found at i:35448 original size:357 final size:345
Alignment explanation
Indices: 34793--35538 Score: 1011
Period size: 357 Copynumber: 2.1 Consensus size: 345
34783 TGTTCCAAAG
*
34793 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGTTGAGGTATTTTCAATTTCTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCT
*
34858 TTCCAATTTCTGCTCTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
66 TTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
*
34923 GCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGGTCTTCAAAAAAATCAACTCATATTGCGA
131 GCTGAGGTA--TT--ATTTCTG----T--ATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGA
34988 GAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTTTTTCAATTTCATCTCTT
186 GAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTTTTTCAATTTCATCTCTT
35053 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CAC-G-CTGAGGTATTTTC
251 CAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGTCACAGTC-GAGGTATTTTC
* ** * **
35115 GATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAA
314 AAAATCTGCTTTCCAAATTAAG-T-TTC-AAAAAA
*
35150 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCT
*
35215 TTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
66 TTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
35280 GCTGAGGTA-T-TTTC-G-ATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
131 GCTGAGGTATTATTTCTGTATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
35341 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTTTTTTCAATTTATGCTTTTCAAATTCTG
196 GAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTG-TTTTTC-A---A----TTTC--A-TCT-
** *
35406 CTTTTTAAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATT
248 C-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA-GTCGAGGTATT
* *
35471 TTCAAAATCTGTTTTTCAAATTAAGTTTCAAAAAA
311 TTCAAAATCTGCTTTCCAAATTAAGTTTCAAAAAA
* *
35506 ACCAACTCATATGGCGAGAGGTGAGTTGAGCCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
35539 TAGCTCACGT
Statistics
Matches: 353, Mismatches: 18, Indels: 37
0.87 0.04 0.09
Matches are distributed among these distances:
343 81 0.23
344 6 0.02
345 1 0.00
348 1 0.00
350 1 0.00
351 4 0.01
352 4 0.01
354 2 0.01
355 3 0.01
356 41 0.12
357 181 0.51
358 1 0.00
359 26 0.07
360 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (345 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGCT
TTCCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCAC
GCTGAGGTATTATTTCTGTATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTTTTTCAATTTCATCTCTTCAAAAAAATC
AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAGTCGAGGTATTTTCAAAATCTGCTTT
CCAAATTAAGTTTCAAAAAA
Found at i:41148 original size:47 final size:48
Alignment explanation
Indices: 41086--41181 Score: 185
Period size: 47 Copynumber: 2.0 Consensus size: 48
41076 CATCGAAGAA
41086 AAACGTCTAAAGGCAATTTGTCATGGACAGATGT-CCAGAAAAGAATG
1 AAACGTCTAAAGGCAATTTGTCATGGACAGATGTACCAGAAAAGAATG
41133 AAACGTCTAAAGGCAATTTGTCATGGACAGATGTACCAGAAAAGAATG
1 AAACGTCTAAAGGCAATTTGTCATGGACAGATGTACCAGAAAAGAATG
41181 A
1 A
41182 TCGCGGCTCA
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 34 0.71
48 14 0.29
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (48 bp):
AAACGTCTAAAGGCAATTTGTCATGGACAGATGTACCAGAAAAGAATG
Found at i:43809 original size:47 final size:47
Alignment explanation
Indices: 43738--44053 Score: 510
Period size: 47 Copynumber: 6.7 Consensus size: 47
43728 TTAGGATTCT
* *
43738 ATGTGATG-ATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
43784 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
43831 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
43878 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
43925 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
43972 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
44019 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
44054 TCCCGAAGGG
Statistics
Matches: 254, Mismatches: 14, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
46 9 0.04
47 245 0.96
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:43812 original size:25 final size:25
Alignment explanation
Indices: 43784--43862 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
43774 CTAATGGCCG
43784 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
43809 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
43831 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
43856 ATGTGAT
1 ATGTGAT
43863 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:44288 original size:36 final size:37
Alignment explanation
Indices: 44172--44322 Score: 252
Period size: 37 Copynumber: 4.1 Consensus size: 37
44162 CCGAGCTCTA
44172 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
44209 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
44246 AAGACCCGATGACTACGTGTGGGGATTTTGT-CGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
44282 AAGACCCGATAACT-TGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
44318 AAGAC
1 AAGAC
44323 TTCGTAATAA
Statistics
Matches: 109, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
35 13 0.12
36 28 0.26
37 68 0.62
ACGTcount: A:0.22, C:0.18, G:0.34, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:46233 original size:43 final size:43
Alignment explanation
Indices: 46185--46287 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
46175 GTTGGTTTTA
46185 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46228 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
46271 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
46288 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:46304 original size:29 final size:29
Alignment explanation
Indices: 46269--46342 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
46259 GTTGTGAGAT
* *
46269 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
46298 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
46327 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
46343 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:46847 original size:40 final size:40
Alignment explanation
Indices: 46653--46835 Score: 201
Period size: 40 Copynumber: 4.6 Consensus size: 40
46643 TTGAATGATG
* * *
46653 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* *
46693 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
46733 TCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
** * *
46773 TCCGTG-CTAAACCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCG-GACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
46813 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGACTAAGTCCCGAAGAGCA
46836 ATCATGCTGG
Statistics
Matches: 123, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 107 0.87
41 8 0.07
42 7 0.06
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:50244 original size:47 final size:47
Alignment explanation
Indices: 50193--50509 Score: 492
Period size: 47 Copynumber: 6.7 Consensus size: 47
50183 TTAGGATTCT
* * *
50193 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
50240 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
50287 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
50334 ATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAATGGCAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
50381 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
50428 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
50475 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
50510 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 1 0.00
47 249 1.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:50268 original size:25 final size:25
Alignment explanation
Indices: 50240--50318 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
50230 CTAATGGCCG
50240 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
50265 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
50287 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
50312 ATGTGAT
1 ATGTGAT
50319 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:50409 original size:25 final size:25
Alignment explanation
Indices: 50334--50412 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
50324 CTAATAGCCG
50334 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * *** ** *
50359 ATATGAT-AAGGCCTAA-TG-GCAG
1 ATGTGATGAATGTGAAAGTGTATAT
50381 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
50406 ATGTGAT
1 ATGTGAT
50413 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.35, C:0.04, G:0.28, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:50678 original size:37 final size:37
Alignment explanation
Indices: 50628--50741 Score: 178
Period size: 37 Copynumber: 3.1 Consensus size: 37
50618 CCGAGCTCTA
50628 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
50665 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
* * * *
50702 AAGACCCGATAACT-TGTGTGGAGATTATGT-CGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
50737 AAGAC
1 AAGAC
50742 TTCGTAATAA
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
35 10 0.14
36 13 0.18
37 50 0.68
ACGTcount: A:0.23, C:0.18, G:0.33, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Found at i:53336 original size:14 final size:14
Alignment explanation
Indices: 53317--53343 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
53307 CGCTGAGGTA
53317 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
53331 TTTTCAATTTCTG
1 TTTTCAATTTCTG
53344 GTCTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:53339 original size:89 final size:89
Alignment explanation
Indices: 53178--53686 Score: 903
Period size: 89 Copynumber: 5.7 Consensus size: 89
53168 TGTTCCAAAG
* *
53178 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGTTGAGGTATTTTCAATTTCTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
53243 TTCCAATTTCTGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
*
53267 ATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
53332 TTTCAATTTCTGGTCTTCAAAAAAA
66 TTTCAATTTCTGCTCTTC-AAAAAA
*
53357 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
53422 TTTCAATTTCAT-CTCTTCAAAAAA
66 TTTCAATTTC-TGCTCTTCAAAAAA
* *
53446 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTGCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
*
53511 TTCCAATTTCTGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
53535 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
53600 TTTCAATTTCTGCTCTTCAAAAAA
66 TTTCAATTTCTGCTCTTCAAAAAA
*
53624 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCGATTTCTG
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTG
53687 CTCTTCAAAA
Statistics
Matches: 401, Mismatches: 16, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
88 1 0.00
89 315 0.79
90 84 0.21
91 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.34
Consensus pattern (89 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTT
TTTCAATTTCTGCTCTTCAAAAAA
Found at i:53604 original size:14 final size:14
Alignment explanation
Indices: 53585--53611 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
53575 CGCTGAGGTA
53585 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
53599 TTTTCAATTTCTG
1 TTTTCAATTTCTG
53612 CTCTTCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:53722 original size:75 final size:75
Alignment explanation
Indices: 53599--53758 Score: 311
Period size: 75 Copynumber: 2.1 Consensus size: 75
53589 CAATTTCTGT
53599 TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
1 TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
53664 CGCTGAGGTA
66 CGCTGAGGTA
*
53674 TTTTCGATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
1 TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
53739 CGCTGAGGTA
66 CGCTGAGGTA
53749 TTTTCAATTT
1 TTTTCAATTT
53759 TTGTTTTTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 83 1.00
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.32
Consensus pattern (75 bp):
TTTTCAATTTCTGCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCA
CGCTGAGGTA
Found at i:53781 original size:15 final size:15
Alignment explanation
Indices: 53749--53796 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
53739 CGCTGAGGTA
* *
53749 TTTTCAATTTTTGTT
1 TTTTCAATTTATGCT
53764 TTTTCAATTTATGC-
1 TTTTCAATTTATGCT
* *
53778 TTTTCAAATTCTGCT
1 TTTTCAATTTATGCT
53793 TTTT
1 TTTT
53797 AAAAAATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.17, C:0.12, G:0.06, T:0.65
Consensus pattern (15 bp):
TTTTCAATTTATGCT
Found at i:53826 original size:267 final size:265
Alignment explanation
Indices: 53228--53923 Score: 895
Period size: 267 Copynumber: 2.6 Consensus size: 265
53218 CGTTGAGGTA
* *
53228 TTTTCAATTTCTGCTTTCCAATTTCTGCTCTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGT
1 TTTTCAATTTCTGCTTTTCAA-TTCTGCT-TT-AAAAAAATCAACTCATATTGCGAGAGGTGAGT
53293 TGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGGTCTTCAAAAAAAA
63 TGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCT-GTCTTC-AAAAAAA
53358 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGTTT
126 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC------TG---
53423 TTCAATTTCATCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
182 -T--ATTTCATCTCTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACG
*
53488 CTGAGGTATTTTCGATTTCTGC
244 CTGAGGTATTTTCAATTTCTGC
*
53510 TTTCCAATTTCTGC---TC---T-T-C---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGCTTTTCAATTCTGCTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
53564 GCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGCTCTTCAAAAAAATCAA
66 GCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTG-TCTTCAAAAAAATCAA
53629 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTC-G-ATTTC-TGCTCT
130 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCTGTATTTCAT-CTCT
53691 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
194 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
* *
53756 TTTTTGTT
259 TTTCTG-C
* * *
53764 TTTTCAATTTATGCTTTTCAAATTCTGCTTTTTAAAAAATCAACTCATATTGCTAGAGGTGAGTT
1 TTTTCAATTTCTGCTTTTC-AATTCTGC-TTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
** * **
53829 GAGCCTC-GGGTCACATG-TCGAGGTATTTTCAAAATCTGTTTTTCAAATTAAGT-TTCAAAAAA
64 GAGCCTCAGGG-CAC--GCT-GAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTCAAAAAA
* *
53891 ACCAACTCATATGGCGAGAGGTGAGTTGAGCCT
125 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
53924 TAGCTCACGT
Statistics
Matches: 377, Mismatches: 17, Indels: 55
0.84 0.04 0.12
Matches are distributed among these distances:
252 1 0.00
253 78 0.21
254 12 0.03
257 2 0.01
260 1 0.00
261 1 0.00
262 1 0.00
263 1 0.00
266 3 0.01
267 143 0.38
268 88 0.23
269 29 0.08
273 1 0.00
274 1 0.00
275 1 0.00
279 1 0.00
282 13 0.03
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (265 bp):
TTTTCAATTTCTGCTTTTCAATTCTGCTTTAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTTCAATTTCTGTCTTCAAAAAAATCAAC
TCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCTGTATTTCATCTCTTC
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATT
TCTGC
Found at i:62687 original size:47 final size:47
Alignment explanation
Indices: 62633--62947 Score: 510
Period size: 47 Copynumber: 6.7 Consensus size: 47
62623 TTAGGATTCT
* * *
62633 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
62680 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62727 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62773 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
62820 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
62867 ATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
62913 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62948 TCCCGAAGGG
Statistics
Matches: 254, Mismatches: 11, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 86 0.34
47 168 0.66
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:62786 original size:140 final size:140
Alignment explanation
Indices: 62633--62947 Score: 490
Period size: 140 Copynumber: 2.2 Consensus size: 140
62623 TTAGGATTCT
*
62633 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
62697 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65 GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62762 GCCTAATGCCG
130 GCCTAATGCCG
* *
62773 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
62838 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGG
66 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
* * *
62902 CCGAGTGGCCA
131 CCTAAT-GCCG
* * * * *
62913 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGCATATATGAGATAAG
62948 TCCCGAAGGG
Statistics
Matches: 163, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
139 8 0.05
140 155 0.95
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (140 bp):
ATGTGATGAATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
CCTAATGCCG
Found at i:62804 original size:93 final size:94
Alignment explanation
Indices: 62633--62947 Score: 510
Period size: 93 Copynumber: 3.4 Consensus size: 94
62623 TTAGGATTCT
* * *
62633 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
62697 GTGTATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
62727 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
62791 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
62820 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * *
62885 TGTATATATGTGA-CAGGCCGAGTGGCCA
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * *
62913 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
62948 TCCCGAAGGG
Statistics
Matches: 209, Mismatches: 10, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
93 137 0.66
94 72 0.34
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:63116 original size:37 final size:37
Alignment explanation
Indices: 63066--63154 Score: 171
Period size: 37 Copynumber: 2.4 Consensus size: 37
63056 CCGAGCTCTA
63066 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
63103 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
63140 AAGA-CCGATGACTAC
1 AAGACCCGATGACTAC
63155 TCGGTAAGAC
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 11 0.21
37 41 0.79
ACGTcount: A:0.22, C:0.20, G:0.33, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
Done.