genome.fa.s68.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold690
Parameters: 2 7 7 80 10 50 1000
Length:  46114

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3347--3705	1	359.0	1	98	0	700	99	0	0	0	0.05
4359--4790	48	9.1	49	82	12	496	31	9	30	28	1.88
4359--4677	46	6.9	47	89	8	487	31	9	29	29	1.88
4910--4988	37	2.1	37	86	4	106	24	18	30	26	1.98
6684--6784	41	2.3	43	91	6	161	23	15	32	27	1.95
6768--6839	28	2.5	28	82	10	92	26	16	29	27	1.97
7192--7288	40	2.4	39	83	6	115	27	23	25	22	2.00
7199--7288	39	2.3	40	86	5	121	26	24	26	22	2.00
7264--7404	40	3.6	40	89	2	198	22	23	29	24	1.99
20238--20294	30	1.9	30	88	0	87	29	24	8	36	1.86
22676--22771	26	3.6	26	73	13	63	40	22	10	26	1.86
22697--23004	27	11.4	27	77	6	230	38	17	10	32	1.84
22697--22936	54	4.5	53	82	3	257	39	18	10	32	1.84
22700--22936	81	2.9	80	82	5	262	39	18	9	31	1.84
22987--23182	27	7.3	27	84	6	211	28	25	7	39	1.82
22988--23148	80	2.0	79	89	1	241	28	26	6	39	1.80
22987--23177	53	3.6	54	85	6	219	28	26	6	38	1.82
23194--23470	27	10.2	27	84	3	279	35	20	17	26	1.95
23541--23587	22	2.1	22	84	7	60	46	6	10	36	1.64
23953--24312	27	13.4	27	90	0	524	31	19	23	24	1.98
24736--24800	22	3.0	22	77	8	69	21	21	21	35	1.96
24941--25042	27	3.8	27	83	5	107	19	22	20	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24941--25042	54	1.9	53	81	2	123	19	22	20	37	1.95
25202--25267	6	10.8	6	76	15	55	21	19	13	45	1.85
25192--25258	31	2.2	31	88	0	98	20	20	11	46	1.82
27215--27311	26	3.7	25	70	10	70	41	20	10	27	1.85
27240--27462	27	8.3	27	76	3	198	39	19	8	32	1.82
27215--27445	54	4.3	53	80	4	178	39	19	9	31	1.83
27293--27544	54	4.6	54	76	6	159	39	18	8	33	1.80
27240--27518	27	10.3	26	74	10	134	40	18	8	32	1.81
27526--27723	27	7.3	27	87	2	254	28	24	8	38	1.84
27688--28094	81	5.0	82	83	4	208	35	21	16	26	1.95
27735--28312	27	21.3	27	87	3	689	35	20	19	24	1.96
28980--29081	27	3.8	27	80	7	100	19	23	21	35	1.96
29218--29331	6	18.3	6	68	20	65	20	17	14	48	1.81
29229--29285	25	2.3	25	100	0	114	19	19	15	45	1.85
29241--29347	31	3.5	31	78	3	110	20	17	14	47	1.82
30226--30250	10	2.5	10	100	0	50	40	28	0	32	1.57
35788--35970	79	2.3	81	84	7	232	25	27	22	24	2.00
35767--35970	40	5.1	40	82	8	238	25	27	22	24	2.00
43839--44020	39	4.6	39	81	8	208	25	28	21	24	1.99

Tables:   1

The End!