Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3713
Parameters: 2 7 7 80 10 50 1000
Length:  61614

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2485--2542
10
5.7
10
76
11
64
29
27
13
29
1.94
2485--2545
20
3.0
20
83
9
79
27
26
13
32
1.93
12263--12293
16
1.9
16
100
0
62
25
0
22
51
1.48
13667--13710
22
2.0
22
95
0
79
25
36
4
34
1.76
14007--14052
12
3.7
12
86
11
65
73
0
6
19
1.04
14007--14053
13
3.6
13
91
0
76
74
0
6
19
1.03
16370--16408
13
3.2
13
85
10
55
74
7
7
10
1.22
18660--18713
23
2.2
25
78
15
60
62
3
22
11
1.43
25867--25912
20
2.4
19
81
3
56
23
10
34
30
1.89
27577--27682
48
2.2
48
85
9
137
14
24
1
59
1.45
28699--28745
23
2.0
24
87
4
69
4
14
2
78
0.99
32579--32622
22
2.0
22
95
0
79
25
36
4
34
1.76
32918--32962
12
3.7
12
88
11
65
73
0
8
17
1.08
32918--32963
13
3.6
13
91
2
76
73
0
8
17
1.07
33736--33769
15
2.3
15
89
0
50
35
29
32
2
1.73
37438--37481
22
2.0
22
95
0
79
25
36
4
34
1.76
39423--39464
18
2.2
20
80
16
54
47
11
11
28
1.76
39907--39931
13
1.9
13
100
0
50
60
8
0
32
1.26
47529--47581
15
3.6
15
92
5
90
20
13
5
60
1.53
47529--47578
14
3.5
14
97
2
91
20
12
6
62
1.50
47619--47675
11
5.2
11
91
8
98
22
0
8
68
1.17
47622--47671
21
2.3
22
96
3
93
18
0
8
74
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48664--48710
23
2.1
23
84
7
62
51
12
4
31
1.59
54427--54457
13
2.4
13
94
0
53
70
3
12
12
1.27
54472--54512
19
2.2
19
86
4
57
75
0
9
14
1.04
54472--54517
19
2.7
16
81
15
56
69
2
10
17
1.27
54890--54936
20
2.3
20
85
0
67
29
36
12
21
1.91
56436--56470
9
3.8
9
92
7
61
88
0
8
2
0.61
56436--56478
10
4.3
10
88
5
61
83
0
11
4
0.78
57478--57583
48
2.2
47
85
9
135
59
1
24
14
1.45
59255--59301
20
2.3
20
85
0
67
29
36
12
21
1.91

Tables:   1

The End!