Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1173
Parameters: 2 7 7 80 10 50 1000
Length:  58854

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
711--762
11
4.8
12
75
20
51
17
23
40
19
1.91
22085--22163
37
2.1
37
90
0
122
25
31
18
24
1.98
22286--22587
47
6.9
45
84
12
310
29
30
7
31
1.86
22334--22587
38
6.0
39
87
11
251
31
29
7
31
1.85
22287--22587
85
3.5
83
82
12
354
29
30
7
31
1.86
22565--22603
17
2.4
17
95
4
71
28
35
10
25
1.89
22582--22892
47
6.6
47
93
3
527
29
31
9
30
1.88
22371--22895
239
2.2
237
89
6
794
29
30
8
31
1.87
22375--22895
192
2.7
187
86
8
748
29
29
8
31
1.87
27270--27322
25
2.1
25
100
0
106
41
24
3
30
1.72
36517--36541
12
2.1
12
100
0
50
16
16
24
44
1.86
40673--40697
11
2.3
11
100
0
50
28
0
0
72
0.86
42814--42850
4
9.8
4
88
11
51
54
2
0
43
1.14
46116--46238
55
2.2
56
88
2
176
26
12
28
33
1.92
46116--46238
28
4.4
28
90
2
176
26
12
28
33
1.92
46141--46251
28
4.0
27
90
3
116
28
11
26
33
1.91
54318--54407
29
3.1
30
87
9
134
24
8
30
36
1.86
54319--54409
27
3.2
28
90
6
132
24
9
30
35
1.88
54348--54422
27
2.7
27
85
6
80
28
10
26
34
1.90

Tables:   1

The End!