Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1389
Parameters: 2 7 7 80 10 50 1000
Length:  56919

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4656--4690
16
2.3
15
90
5
52
74
0
2
22
0.95
6034--6086
23
2.4
22
76
20
56
9
18
1
69
1.25
15843--15876
6
5.7
6
96
0
50
44
23
0
32
1.54
15884--15928
20
2.2
20
84
4
54
8
26
0
64
1.23
16814--16896
34
2.5
33
83
13
107
10
12
3
73
1.22
16868--16893
13
2.0
13
100
0
52
0
15
0
84
0.62
16934--16998
15
4.6
14
85
9
71
13
3
3
80
0.96
16934--16986
15
3.5
15
87
5
79
13
3
3
79
1.01
20674--20725
21
2.4
22
75
18
56
65
1
23
9
1.32
26483--26520
17
2.2
18
85
4
51
63
2
23
10
1.39
26502--26556
12
4.6
12
73
15
51
63
0
23
12
1.29
32986--33012
13
2.1
13
100
0
54
62
7
0
29
1.22
33237--33285
10
4.8
10
80
14
55
40
22
22
14
1.90
33237--33285
21
2.4
21
89
3
73
40
22
22
14
1.90
39287--39330
22
2.0
22
95
0
79
34
4
36
25
1.76
43911--43957
20
2.3
20
81
0
58
29
34
12
23
1.92
46525--46570
17
2.6
17
86
3
56
8
13
0
78
0.97
48477--48515
12
3.2
12
82
17
53
82
2
10
5
0.93
48469--48515
24
2.0
24
86
0
67
82
2
10
4
0.88
49529--49632
18
5.6
18
75
5
82
71
3
18
6
1.24
49525--49632
6
17.7
6
70
6
74
71
3
18
6
1.23
49593--49630
13
2.8
13
82
17
51
73
0
18
7
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49594--49644
21
2.4
21
74
6
50
74
1
17
5
1.11
49647--49709
33
1.9
33
84
12
85
53
6
26
12
1.62
53011--53048
17
2.2
17
85
0
58
71
5
7
15
1.28
53056--53095
10
3.6
11
86
10
55
82
2
10
5
0.91
54107--54209
11
8.7
12
73
14
63
70
3
18
6
1.25
54127--54182
23
2.5
22
77
11
60
67
3
21
7
1.30
54110--54166
17
3.4
17
78
9
62
70
7
17
5
1.29
54172--54209
13
2.8
13
82
17
51
73
0
18
7
1.06
54075--54209
12
11.5
12
71
17
70
68
2
20
8
1.28
54227--54289
33
1.9
33
84
12
85
53
6
26
12
1.62

Tables:   1

The End!