genome.fa.s690.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2061
Parameters: 2 7 7 80 10 50 1000
Length:  55618

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1673--1736	27	2.4	27	86	2	85	28	15	17	39	1.90
1778--2142	79	4.6	77	72	14	212	32	8	19	39	1.83
1715--2142	27	16.2	27	73	13	241	32	7	19	39	1.81
2044--2116	26	2.8	25	81	6	65	35	10	15	38	1.82
1805--2155	78	4.4	78	74	9	270	32	8	19	39	1.82
1715--2154	53	8.3	52	70	14	233	32	7	19	40	1.80
6609--6686	26	3.0	26	77	9	77	39	16	11	32	1.85
6638--6946	87	3.7	86	73	12	196	38	20	9	32	1.84
6798--7009	82	2.6	83	76	15	203	41	17	7	33	1.78
6612--7052	28	15.9	27	73	12	193	39	19	9	32	1.83
13073--13185	27	4.2	26	82	7	127	37	22	23	16	1.94
13076--13182	54	2.0	54	85	3	144	37	20	24	17	1.94
14604--14674	24	3.0	24	95	0	124	25	38	1	35	1.65
19542--19623	25	3.3	25	84	1	94	26	19	20	32	1.97
20417--20473	27	2.1	28	81	12	66	29	19	15	35	1.93
20431--20508	27	2.9	26	76	14	77	23	17	19	39	1.92
20549--20605	27	2.1	27	83	6	71	36	10	12	40	1.77
20614--20765	27	5.6	27	80	8	114	29	9	21	40	1.84
20642--20807	54	3.1	53	80	6	165	29	11	21	37	1.89
20642--20768	27	4.7	27	82	5	132	29	9	21	39	1.85
20615--20798	81	2.3	81	79	7	196	29	11	20	39	1.87
20797--20972	54	3.3	54	90	1	273	41	7	22	28	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20797--20982	27	6.9	27	85	2	230	40	8	22	29	1.82
23305--23418	31	3.7	31	92	2	196	28	25	16	28	1.97
23638--23707	25	2.8	25	88	0	95	25	24	22	27	2.00
24515--24579	27	2.4	27	80	10	71	20	24	20	35	1.96
24633--24743	27	3.9	27	69	19	73	32	8	15	44	1.76
24697--24849	27	5.7	26	84	6	155	31	7	20	41	1.79
24725--24849	54	2.3	53	85	6	171	31	7	20	40	1.80
24699--24918	81	2.7	81	78	8	216	30	9	21	38	1.84
24727--24882	54	2.9	54	80	5	147	30	10	19	39	1.85
24881--25078	27	7.3	27	87	2	263	38	7	24	28	1.83
24881--25078	81	2.4	81	90	1	308	38	7	24	28	1.83
26039--26068	15	2.1	14	93	6	51	33	26	13	26	1.93
27256--27291	9	4.0	9	89	10	56	44	0	0	55	0.99
28166--28278	44	2.6	43	90	2	172	28	23	18	29	1.98
30955--31267	47	6.7	47	94	0	502	31	9	30	28	1.88
31387--31524	37	3.7	37	96	0	240	24	18	31	26	1.97
32806--33031	40	5.7	40	93	0	326	24	20	28	26	1.99
36802--37169	47	7.3	49	78	15	358	33	8	29	29	1.86
36884--37028	68	2.1	68	98	1	283	34	5	26	33	1.80
36933--36979	19	2.5	19	96	3	87	38	0	23	38	1.55
36837--37075	117	2.1	113	95	3	426	33	6	27	31	1.83
36802--37114	164	1.9	164	96	2	576	33	7	27	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37288--37425	37	3.7	37	96	0	240	23	18	31	25	1.98
39076--39113	19	2.1	18	85	9	51	52	0	7	39	1.31
47137--47269	48	2.8	48	87	0	185	25	18	25	30	1.98
47888--48421	292	1.8	292	97	0	1023	30	6	23	39	1.81
48643--48706	29	2.2	29	97	0	119	15	28	35	20	1.93

Tables:   1

The End!