genome.fa.s693.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2678
Parameters: 2 7 7 80 10 50 1000
Length:  53795

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13368--13590	27	8.2	27	79	2	232	41	21	17	19	1.90
13368--13601	54	4.3	54	84	4	274	40	22	16	20	1.91
13420--13616	27	7.3	26	75	14	103	40	20	17	21	1.92
13580--13742	27	6.0	27	78	2	139	27	14	20	37	1.92
14007--14063	23	2.5	23	91	0	96	26	3	47	22	1.67
14219--14269	25	2.0	25	100	0	102	11	7	29	50	1.67
18279--18403	6	20.3	6	69	16	69	49	12	17	20	1.79
18300--18369	25	2.8	25	88	0	104	48	11	20	20	1.79
18302--18403	31	3.3	31	71	15	93	49	12	17	20	1.79
18626--18677	27	2.0	26	84	3	68	34	17	26	21	1.95
18913--19231	27	11.8	27	85	2	390	41	7	21	30	1.80
18913--19231	81	3.9	82	85	2	430	41	7	21	30	1.80
19252--19387	54	2.5	52	75	8	119	27	8	24	39	1.84
19265--19387	27	4.6	26	73	8	86	26	8	25	39	1.85
21431--21503	31	2.4	31	90	0	110	47	10	19	21	1.79
21408--21475	25	2.7	25	90	0	109	47	13	20	19	1.82
21621--21680	27	2.3	26	82	2	66	36	20	21	21	1.95
21729--21780	27	2.0	26	84	3	68	34	21	26	17	1.95
22017--22371	27	13.1	27	85	2	408	40	6	21	30	1.79
22017--22371	81	4.4	81	85	2	453	40	6	21	30	1.79
22348--22525	54	3.3	53	75	5	169	28	10	21	39	1.86
22364--22517	27	5.8	26	73	10	96	27	10	22	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24782--24937	43	3.7	43	80	6	192	24	18	27	29	1.98
24783--24937	84	1.8	84	86	5	224	24	18	27	29	1.98
33139--33414	27	10.2	27	83	0	300	30	21	5	41	1.77
33139--33414	54	5.1	54	84	0	345	30	21	5	41	1.77
33125--33414	81	3.6	81	81	1	339	32	21	5	40	1.77
33716--33779	33	2.0	32	84	3	83	20	23	20	35	1.96
33741--33800	27	2.3	26	85	2	75	21	23	20	35	1.96
33947--34024	6	12.8	6	71	12	61	20	19	11	48	1.79
39750--39820	34	2.1	33	82	12	83	25	22	25	26	2.00
45428--45501	29	2.6	29	86	4	96	25	31	16	27	1.96
48361--48432	26	2.8	26	87	10	96	23	22	22	31	1.98
48386--48445	26	2.4	26	79	20	74	28	18	21	31	1.97
48652--48735	31	2.7	31	83	5	109	33	15	26	25	1.95
52508--52538	13	2.4	13	94	0	53	0	87	0	12	0.55

Tables:   1

The End!