genome.fa.s698.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold619
Parameters: 2 7 7 80 10 50 1000
Length:  50914

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493--1085	44	13.9	44	79	8	606	29	26	16	27	1.97
519--1090	218	2.7	215	90	5	866	30	25	16	27	1.96
13307--13374	3	23.3	3	71	11	52	60	5	2	30	1.35
19192--19239	3	16.0	3	95	0	87	64	2	0	33	1.05
22230--22337	26	4.2	26	93	0	189	36	24	7	32	1.83
26337--26488	3	50.3	3	70	11	87	29	8	1	60	1.34
26384--26459	36	2.0	36	87	7	107	28	9	1	60	1.36
30402--30430	11	2.6	11	100	0	58	72	13	0	13	1.13
32388--32573	44	4.2	44	81	0	210	32	18	23	25	1.97
32504--32647	77	1.9	77	86	2	209	29	22	24	23	1.99
32695--33286	88	6.7	88	88	1	866	28	23	20	28	1.99
33237--33343	53	2.0	53	98	0	205	23	23	20	32	1.98
33149--33431	141	2.0	141	92	0	467	26	21	20	30	1.98
33061--33517	229	2.0	229	86	1	648	27	21	20	30	1.98
32973--33599	317	2.0	317	89	1	970	27	21	20	29	1.98
32885--33690	405	2.0	405	88	1	1204	27	21	20	29	1.98
32809--33778	493	2.0	493	89	0	1474	27	21	20	29	1.98
33290--33801	88	5.8	88	88	0	722	27	21	21	29	1.98
33860--34711	136	6.3	136	75	11	454	32	15	22	29	1.95
33865--34707	45	18.7	46	69	15	392	31	15	22	30	1.95
33963--34724	180	4.3	179	82	6	909	31	16	22	29	1.96
34100--34704	87	6.9	84	75	10	322	31	16	22	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34324--34577	42	5.9	42	80	5	274	27	16	26	29	1.97
34332--34620	87	3.3	87	87	1	409	28	14	26	29	1.96
33964--34724	353	2.1	355	84	5	966	31	16	22	29	1.96
36342--36374	13	2.6	13	90	4	50	39	0	12	48	1.40
41769--41845	6	14.4	5	73	18	50	20	5	0	74	1.01
44758--44790	13	2.6	13	90	4	50	39	0	12	48	1.40
45113--45284	86	2.0	86	98	0	335	52	13	8	25	1.67
45319--45347	15	2.0	15	93	6	51	10	6	0	82	0.83
46021--46277	3	86.3	3	77	7	238	31	6	1	60	1.31
47289--47326	20	1.9	20	84	10	51	63	5	10	21	1.46

Tables:   1

The End!