Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 101 of 290
Found at i:31164568 original size:34 final size:35
Alignment explanation
Indices: 31164488--31164574 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
31164478 TACAGTGTAC
* * *
31164488 TCTGGTGTGTTGGTTGATCTGGCTCTTACGAGCAT
1 TCTGGTGTGCTGGTTGGTCTGGCTCTTACAAGCAT
*
31164523 TCTGGTATGCTGGTTGGTCTGGCTCATT-CAAGCA-
1 TCTGGTGTGCTGGTTGGTCTGGCTC-TTACAAGCAT
*
31164557 TCTGGTGTGCTGGATGGT
1 TCTGGTGTGCTGGTTGGT
31164575 TAACCGTGTC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
34 16 0.36
35 27 0.60
36 2 0.04
ACGTcount: A:0.11, C:0.17, G:0.33, T:0.38
Consensus pattern (35 bp):
TCTGGTGTGCTGGTTGGTCTGGCTCTTACAAGCAT
Found at i:31174086 original size:11 final size:11
Alignment explanation
Indices: 31174052--31174091 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
31174042 ATACTTAAAA
31174052 TAAATAATAAT
1 TAAATAATAAT
*
31174063 T-AAT--TACT
1 TAAATAATAAT
31174071 TAAATAATAAT
1 TAAATAATAAT
31174082 TAAATAATAA
1 TAAATAATAA
31174092 ATTTTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
8 4 0.17
9 3 0.12
10 3 0.12
11 14 0.58
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (11 bp):
TAAATAATAAT
Found at i:31181491 original size:23 final size:24
Alignment explanation
Indices: 31181440--31181488 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
31181430 TTTGAACAAG
* *
31181440 TTTATCGTTAAAAATGTTACTAAA
1 TTTATCATTAAAAATATTACTAAA
31181464 TTTATCATTAAAAA-ATTA-TAAA
1 TTTATCATTAAAAATATTACTAAA
31181486 TTT
1 TTT
31181489 TATAAAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 7 0.30
23 3 0.13
24 13 0.57
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (24 bp):
TTTATCATTAAAAATATTACTAAA
Found at i:31185698 original size:18 final size:19
Alignment explanation
Indices: 31185663--31185704 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 19
31185653 TTTCTGCAGT
31185663 GAAAAATAAAAGAAAAG-A
1 GAAAAATAAAAGAAAAGAA
**
31185681 GAAAAATAAAAGGGAAGAA
1 GAAAAATAAAAGAAAAGAA
31185700 GAAAA
1 GAAAA
31185705 GAAAAATAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.05
Consensus pattern (19 bp):
GAAAAATAAAAGAAAAGAA
Found at i:31191088 original size:20 final size:21
Alignment explanation
Indices: 31191045--31191088 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
31191035 GACTAAATTG
31191045 AAATAAATTAGAAAATTTTGA
1 AAATAAATTAGAAAATTTTGA
*
31191066 AAATAAGTT-GAAAATTTTGA
1 AAATAAATTAGAAAATTTTGA
31191086 AAA
1 AAA
31191089 CAAGGGTCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (21 bp):
AAATAAATTAGAAAATTTTGA
Found at i:31193118 original size:17 final size:18
Alignment explanation
Indices: 31193087--31193120 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
31193077 AAAAAATCAC
31193087 TTAACAACACAAGTTTAT
1 TTAACAACACAAGTTTAT
31193105 TTAACAAC-CAAGTTTA
1 TTAACAACACAAGTTTA
31193121 ATAATCTATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.44, C:0.18, G:0.06, T:0.32
Consensus pattern (18 bp):
TTAACAACACAAGTTTAT
Found at i:31202478 original size:30 final size:30
Alignment explanation
Indices: 31202442--31202526 Score: 118
Period size: 30 Copynumber: 2.8 Consensus size: 30
31202432 TTGAAAGGTG
*
31202442 GCAACAATGCAGCAGCATGCAAGTGACCAA
1 GCAACAATGCAGCAGCATGCAAATGACCAA
31202472 GCAACAATGCAGCAGCATGCAAATGACCAA
1 GCAACAATGCAGCAGCATGCAAATGACCAA
* * *
31202502 GTAACACA-GCAACATCATGCAAATG
1 GCAACA-ATGCAGCAGCATGCAAATG
31202527 TCCATGGTGT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 49 0.98
31 1 0.02
ACGTcount: A:0.42, C:0.26, G:0.20, T:0.12
Consensus pattern (30 bp):
GCAACAATGCAGCAGCATGCAAATGACCAA
Found at i:31222333 original size:42 final size:43
Alignment explanation
Indices: 31222221--31222338 Score: 166
Period size: 44 Copynumber: 2.7 Consensus size: 43
31222211 GGATTCCTAG
* *
31222221 ATGTGATATCGTGTAAGACCATGTCTGAGACATTGGCATCGAT
1 ATGTGATTTCGTGTAAGACCATGTCTGAGACATTGGCACCGAT
* *
31222264 TTGAGATTTACGTGTAAGACCATGTCTGAGACATTGGCACCG-T
1 ATGTGATTT-CGTGTAAGACCATGTCTGAGACATTGGCACCGAT
* *
31222307 ATGTGATTTCGTGTAAGACCTTGTCTGGGACA
1 ATGTGATTTCGTGTAAGACCATGTCTGAGACA
31222339 GCGACATCGA
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 21 0.32
43 14 0.21
44 31 0.47
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
ATGTGATTTCGTGTAAGACCATGTCTGAGACATTGGCACCGAT
Found at i:31226839 original size:27 final size:26
Alignment explanation
Indices: 31226809--31226911 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 26
31226799 TTTACCAAAG
* *
31226809 TACCCCCGATTTACAGAATTATCATTC
1 TACCCTCGATTTACAGAATTA-CATTT
*
31226836 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTAC-ATTT
*
31226863 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTA-CATTT
*
31226890 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
31226912 TAAAATACCC
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
26 2 0.03
27 66 0.96
28 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (26 bp):
TACCCTCGATTTACAGAATTACATTT
Found at i:31226874 original size:54 final size:54
Alignment explanation
Indices: 31226809--31226913 Score: 156
Period size: 54 Copynumber: 1.9 Consensus size: 54
31226799 TTTACCAAAG
* * *
31226809 TACCCCCGATTTACAGAATTATCATTCTACCCTCGATTTATAGAATTACTATTT
1 TACCCCCGATTTACAGAATTACCATTCTACCCTCGATTTACAAAATTACTATTT
* * *
31226863 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTA
1 TACCCCCGATTTACAGAATTACCATTCTACCCTCGATTTACAAAATTACTA
31226914 AAATACCCCT
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (54 bp):
TACCCCCGATTTACAGAATTACCATTCTACCCTCGATTTACAAAATTACTATTT
Found at i:31226959 original size:28 final size:28
Alignment explanation
Indices: 31226904--31226976 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
31226894 CTCGATTTAC
*
31226904 AAAATTACTAAAATA-CCCCTGGTTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
31226931 AAAATTACTAAAATACCCCCTGATTTGT
1 AAAATTACTAAAATACCCCCTGATTTGT
*
31226959 AAAATTACTGAAATACCC
1 AAAATTACTAAAATACCC
31226977 TCGACTTATA
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
27 15 0.35
28 28 0.65
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (28 bp):
AAAATTACTAAAATACCCCCTGATTTGT
Found at i:31226989 original size:55 final size:55
Alignment explanation
Indices: 31226890--31227023 Score: 137
Period size: 55 Copynumber: 2.4 Consensus size: 55
31226880 ATTACCATTT
* * ** * *
31226890 TACCCTCGATTTACAAAATTACTAAAATACCCCTGGTTTGT-AAAATTACTAAAA
1 TACCCCCGATTTATAAAATTACTAAAATACCCCTGACTTATAAAAATTACCAAAA
* * *
31226944 TACCCCCTGATTTGTAAAATTACTGAAATA-CCCTCGACTTATAAAAATTACCAAAG
1 TACCCCC-GATTTATAAAATTACTAAAATACCCCT-GACTTATAAAAATTACCAAAA
* *
31227000 TACCCTCGATTTATAGAATTACTA
1 TACCCCCGATTTATAAAATTACTA
31227024 TTTTACCCGT
Statistics
Matches: 64, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
54 10 0.16
55 37 0.58
56 17 0.27
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (55 bp):
TACCCCCGATTTATAAAATTACTAAAATACCCCTGACTTATAAAAATTACCAAAA
Found at i:31226990 original size:28 final size:27
Alignment explanation
Indices: 31226836--31227049 Score: 171
Period size: 27 Copynumber: 7.9 Consensus size: 27
31226826 ATTATCATTC
* ***
31226836 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
* * ***
31226863 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
31226890 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACTAAAA
* *
31226917 TACCC-CTGGTTTGTAAAATTACTAAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
31226944 TACCCCCTGATTTGTAAAATTACTGAAA
1 TACCCTC-GATTTATAAAATTACTAAAA
* * *
31226972 TACCCTCGACTTATAAAAATTACCAAAG
1 TACCCTCGATTTAT-AAAATTACTAAAA
* ***
31227000 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTAAAA
*
31227027 TACCCGT-GATTTACAAAATTACT
1 TACCC-TCGATTTATAAAATTACT
31227050 GTTTTACTCT
Statistics
Matches: 157, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 1 0.01
27 106 0.68
28 50 0.32
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACTAAAA
Found at i:31227054 original size:27 final size:27
Alignment explanation
Indices: 31227007--31227085 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
31226997 AAGTACCCTC
* * *
31227007 GATTTATAGAATTACTATTTTACCCGT
1 GATTTACAAAATTACTGTTTTACCCGT
* *
31227034 GATTTACAAAATTACTGTTTTACTCTT
1 GATTTACAAAATTACTGTTTTACCCGT
* *
31227061 AATTTACAAAATTACCGTTTTACCC
1 GATTTACAAAATTACTGTTTTACCC
31227086 TCGATTGTGA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.43
Consensus pattern (27 bp):
GATTTACAAAATTACTGTTTTACCCGT
Found at i:31227085 original size:137 final size:135
Alignment explanation
Indices: 31226863--31227111 Score: 302
Period size: 137 Copynumber: 1.8 Consensus size: 135
31226853 ATTACTATTT
**
31226863 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCCTGGTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCCTAATT
** *
31226928 TGTAAAATTACTAAAATACCCCCTGATTTGTAAAATTACTGAAATACCCTCGACTTATAAAAATT
66 TACAAAATTACCAAAATACCCCC-GA-TTGTAAAATTACTGAAATACCCTCGACTTATAAAAATT
31226993 ACCAAAG
129 ACCAAAG
* **** * *
31227000 TACCCTCGATTTATAGAATTACTATTTTACCCGT-GATTTACAAAATTACTGTTTTACTCTTAAT
1 TACCCTCGATTTATAGAATTACCATTTTACCC-TCGATTTACAAAATTACTAAAATACCCCTAAT
**** * *
31227064 TTACAAAATTACCGTTTTACCCTCGATTGTGAAATTACTGAAATACCC
65 TTACAAAATTACCAAAATACCCCCGATTGTAAAATTACTGAAATACCC
31227112 CTATAGGATA
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
135 21 0.23
136 2 0.02
137 69 0.74
138 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.35
Consensus pattern (135 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTAAAATACCCCTAATT
TACAAAATTACCAAAATACCCCCGATTGTAAAATTACTGAAATACCCTCGACTTATAAAAATTAC
CAAAG
Found at i:31227153 original size:27 final size:27
Alignment explanation
Indices: 31227123--31227266 Score: 157
Period size: 27 Copynumber: 5.3 Consensus size: 27
31227113 TATAGGATAG
**
31227123 AATTACCAAAGCACCCCTAATTTGTAA
1 AATTACCAAAATACCCCTAATTTGTAA
* ** *
31227150 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAATTTGTAA
*
31227177 AATTATCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AATTTGTAA
*
31227204 AATTACCAAAATACCCCTAATTTATAA
1 AATTACCAAAATACCCCTAATTTGTAA
* *
31227231 AATTA-CAGAAATACCCTTAATTTGTAG
1 AATTACCA-AAATACCCCTAATTTGTAA
*
31227258 ATTTACCAA
1 AATTACCAA
31227267 CACACTATTG
Statistics
Matches: 96, Mismatches: 17, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
26 5 0.05
27 85 0.89
28 6 0.06
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAATTTGTAA
Found at i:31227162 original size:54 final size:53
Alignment explanation
Indices: 31227082--31227222 Score: 126
Period size: 54 Copynumber: 2.6 Consensus size: 53
31227072 TTACCGTTTT
* * ** *
31227082 ACCCTCGA-TTGTGAAATTACTGAAATACCCCTATAGGAT-AGAATTACCAAAGC
1 ACCCTCAATTTGTAAAATTACCAAAATACCCCTATAGG-TGA-AATTACCAAAAC
* * ** * *
31227135 ACCC-CTAATTTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTATCAAAAT
1 ACCCTC-AATTTGTAAAATTACCAAAATACCCCT-ATAGGTGAAATTACCAAAAC
31227189 ACCCTCAATTTGTAAAATTACCAAAATACCCCTA
1 ACCCTCAATTTGTAAAATTACCAAAATACCCCTA
31227223 ATTTATAAAA
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
52 1 0.01
53 5 0.07
54 60 0.86
55 4 0.06
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.28
Consensus pattern (53 bp):
ACCCTCAATTTGTAAAATTACCAAAATACCCCTATAGGTGAAATTACCAAAAC
Found at i:31227337 original size:27 final size:27
Alignment explanation
Indices: 31227294--31227367 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
31227284 AAATGACTAC
*
31227294 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
31227321 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
* *
31227348 AATACCCTTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
31227368 TGATGAATAC
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:31228101 original size:20 final size:20
Alignment explanation
Indices: 31228077--31228163 Score: 131
Period size: 20 Copynumber: 4.3 Consensus size: 20
31228067 GATATGATAT
* *
31228077 ACATGAT-TGATATGATATGT
1 ACATGATATG-TATGAAATGC
*
31228097 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
31228117 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
31228137 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
31228157 ACATGAT
1 ACATGAT
31228164 GTATTCATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:31228104 original size:11 final size:11
Alignment explanation
Indices: 31228076--31228148 Score: 50
Period size: 11 Copynumber: 7.2 Consensus size: 11
31228066 GGATATGATA
31228076 TACATGAT-TG
1 TACATGATATG
*
31228086 -ATATGATATG
1 TACATGATATG
31228096 TACATGATATG
1 TACATGATATG
* *
31228107 T--ATAAAATG
1 TACATGATATG
*
31228116 CACATGATATG
1 TACATGATATG
*
31228127 T--ATGAAATG
1 TACATGATATG
*
31228136 CACATGATATG
1 TACATGATATG
31228147 TA
1 TA
31228149 TGAAATGCAC
Statistics
Matches: 45, Mismatches: 12, Indels: 11
0.66 0.18 0.16
Matches are distributed among these distances:
9 19 0.42
10 2 0.04
11 24 0.53
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.34
Consensus pattern (11 bp):
TACATGATATG
Found at i:31228310 original size:25 final size:26
Alignment explanation
Indices: 31228213--31228348 Score: 208
Period size: 26 Copynumber: 5.3 Consensus size: 26
31228203 GAGGAAGTGC
31228213 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
31228239 AAAAGGGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
31228265 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
31228291 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
31228316 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
31228339 AAAAGAGGCT
1 AAAAG-GGCT
31228349 AGGCCTCTAG
Statistics
Matches: 103, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 31 0.30
26 60 0.58
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:31228540 original size:42 final size:42
Alignment explanation
Indices: 31228481--31228574 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 42
31228471 TAGTCTCCCC
* ** *
31228481 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
*
31228523 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
31228565 AAATGGGCTT
1 AAATGGGCTT
31228575 ATGGGCCATA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:31228631 original size:31 final size:31
Alignment explanation
Indices: 31228596--31228705 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
31228586 CGTTTACAGT
*
31228596 AAAGGCTTCAGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
31228627 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
31228658 AAAGGCTTCAGCCCAGTGATATGATTTATAA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
*
31228689 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCAGCCCAGT
31228706 AACTGTTAAA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:31231041 original size:54 final size:53
Alignment explanation
Indices: 31230965--31231231 Score: 239
Period size: 54 Copynumber: 4.9 Consensus size: 53
31230955 TTAGTTTATC
* * *
31230965 GAATTACCAAAGTACCCCCAATTTACAGAATTACTGTTCTACCCTCGATTTATA
1 GAATTACCAAAGTA-CCCCAATTTATAGAATTACTGTTTTACCCTCGATTTACA
*** * *
31231019 GAATTACCATTTTACCCTCAATTTATAGAATTACCGTTTTACCTTCGATTTACA
1 GAATTACCAAAGTACCC-CAATTTATAGAATTACTGTTTTACCCTCGATTTACA
* * * * * ***
31231073 AAATTACTAAAATACCCCTAATTTGTAAAATTACTGAAATACCCTCGACTTGTA-A
1 GAATTACCAAAGTACCCC-AATTTATAGAATTACTGTTTTACCCTCGA-TT-TACA
*
31231128 AAATTACCAAAGTACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACA
1 GAATTACCAAAGTACCC-CAATTTATAGAATTACTGTTTTACCCTCGATTTACA
* *** * * * *
31231182 GAATTACTATTTTACCCCTGATTTACAAAATTACCGTTTTACCCTCGATT
1 GAATTACCAAAGTACCCC-AATTTATAGAATTACTGTTTTACCCTCGATT
31231232 GTGAAATTAC
Statistics
Matches: 170, Mismatches: 36, Indels: 14
0.77 0.16 0.06
Matches are distributed among these distances:
53 7 0.04
54 118 0.69
55 42 0.25
56 3 0.02
ACGTcount: A:0.34, C:0.23, G:0.08, T:0.36
Consensus pattern (53 bp):
GAATTACCAAAGTACCCCAATTTATAGAATTACTGTTTTACCCTCGATTTACA
Found at i:31231225 original size:109 final size:108
Alignment explanation
Indices: 31230966--31231241 Score: 313
Period size: 109 Copynumber: 2.6 Consensus size: 108
31230956 TAGTTTATCG
* * * * * * **
31230966 AATTACCAAAGTACCCCCAATTTACAGAATTACTGTTCTACCCTCGATT-TATAGAATTACCATT
1 AATTACTAAAATACCCCTAATTTACAAAATTACTGTTATACCCTCGATTGTA-AAAATTACCAAA
* *
31231030 TTACCCTCAATTTATAGAATTACCGTTTTACCTTCGATTTACAA
65 GTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAA
** **
31231074 AATTACTAAAATACCCCTAATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAAATTACCAAA
1 AATTACTAAAATACCCCTAATTTACAAAATTACTGTTATACCCTCGA-TTGTAAAAATTACCAAA
* *
31231139 GTACCCTCAATTTATAGAATTACTGTTTTACCCTCGATTTACAG
65 GTACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAA
*** * * * *
31231183 AATTACTATTTTACCCCTGATTTACAAAATTACCGTTTTACCCTCGATTGT-GAAATTAC
1 AATTACTAAAATACCCCTAATTTACAAAATTACTGTTATACCCTCGATTGTAAAAATTAC
31231242 TGAAATATCT
Statistics
Matches: 139, Mismatches: 27, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
107 7 0.05
108 42 0.30
109 88 0.63
110 2 0.01
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (108 bp):
AATTACTAAAATACCCCTAATTTACAAAATTACTGTTATACCCTCGATTGTAAAAATTACCAAAG
TACCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTACAA
Found at i:31231231 original size:27 final size:27
Alignment explanation
Indices: 31230985--31231231 Score: 158
Period size: 27 Copynumber: 9.1 Consensus size: 27
31230975 AGTACCCCCA
*
31230985 ATTTACAGAATTACTGTTCTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
* ** *
31231012 ATTTATAGAATTACCATTTTACCCTCA
1 ATTTACAGAATTACTGTTTTACCCTCG
* * *
31231039 ATTTATAGAATTACCGTTTTACCTTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
* **** *
31231066 ATTTACAAAATTACTAAAATACCC-CTA
1 ATTTACAGAATTACTGTTTTACCCTC-G
** * ***
31231093 ATTTGTAAAATTACTGAAATACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
* ***** *
31231120 ACTTGTA-AAAATTACCAAAGTACCCTCA
1 A-TT-TACAGAATTACTGTTTTACCCTCG
*
31231148 ATTTATAGAATTACTGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
*
31231175 ATTTACAGAATTACTATTTTACCC-CTG
1 ATTTACAGAATTACTGTTTTACCCTC-G
* *
31231202 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTACAGAATTACTGTTTTACCCTCG
31231229 ATT
1 ATT
31231232 GTGAAATTAC
Statistics
Matches: 175, Mismatches: 38, Indels: 14
0.77 0.17 0.06
Matches are distributed among these distances:
26 4 0.02
27 148 0.85
28 22 0.13
29 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (27 bp):
ATTTACAGAATTACTGTTTTACCCTCG
Found at i:31231293 original size:27 final size:27
Alignment explanation
Indices: 31231263--31231386 Score: 119
Period size: 27 Copynumber: 4.6 Consensus size: 27
31231253 TATAGGGTAG
*
31231263 AATTACCAAAACACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
31231290 AATTACTAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
31231317 AATTATCAAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
**
31231344 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCCTAG-TTTGTAA
31231371 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
31231387 TTGATTTGTA
Statistics
Matches: 78, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
26 5 0.06
27 69 0.88
28 4 0.05
ACGTcount: A:0.43, C:0.22, G:0.07, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:31231374 original size:54 final size:54
Alignment explanation
Indices: 31231283--31231396 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
31231273 ACACCCCTAG
* * ***
31231283 TTTGTAAAATTACTAAAATACCACTGGTTTGTGAAATTATCA-AAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTA-CAGAAATACCCTCAA
* **
31231337 TTTGTAAAATTACCAAAATACCCCTGATTTACAAAATTACAGAAATACCCTTGA
1 TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
31231391 TTTGTA
1 TTTGTA
31231397 GATTTTCCAA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTACAAAATTACAGAAATACCCTCAA
Found at i:31231395 original size:81 final size:81
Alignment explanation
Indices: 31231194--31231395 Score: 182
Period size: 81 Copynumber: 2.5 Consensus size: 81
31231184 ATTACTATTT
* *** * * * *
31231194 TACCCCTGATTTACAAAATTACCGTTTTACCCTCGA-TTGTGAAATTACTGAAATATCTCTATAG
1 TACCCCTGATTTACAAAATTACAGAAATACCCTTGATTTGTGAAATTACTAAAATACCTCAATAG
*
31231258 GGTAGAATTACCAAAA
66 GGTAAAATTACCAAAA
* ** *
31231274 CACCCCT-AGTTTGTAAAATTACTA-AAATACCAC-TGGTTTGTGAAATTA-TCAAAATACCCTC
1 TACCCCTGA-TTTACAAAATTAC-AGAAATACC-CTTGATTTGTGAAATTACT-AAAATA-CCTC
**
31231335 AAT-TTGTAAAATTACCAAAA
61 AATAGGGTAAAATTACCAAAA
31231355 TACCCCTGATTTACAAAATTACAGAAATACCCTTGATTTGT
1 TACCCCTGATTTACAAAATTACAGAAATACCCTTGATTTGT
31231396 AGATTTTCCA
Statistics
Matches: 94, Mismatches: 19, Indels: 17
0.72 0.15 0.13
Matches are distributed among these distances:
79 1 0.01
80 25 0.27
81 62 0.66
82 6 0.06
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.32
Consensus pattern (81 bp):
TACCCCTGATTTACAAAATTACAGAAATACCCTTGATTTGTGAAATTACTAAAATACCTCAATAG
GGTAAAATTACCAAAA
Found at i:31231408 original size:81 final size:81
Alignment explanation
Indices: 31231263--31231414 Score: 177
Period size: 81 Copynumber: 1.9 Consensus size: 81
31231253 TATAGGGTAG
** *
31231263 AATTACCAAAACACCCCTAGTTTGTAAAATTACTAAAATACCACTGGTTTGTGAAATTATCAAAA
1 AATTACCAAAACACCCCTAGTTTACAAAATTACTAAAATACCACTGATTTGTGAAATTATCAAAA
*
31231328 TACCCTCAATTTGTAA
66 CACCCTCAATTTGTAA
* * *
31231344 AATTACCAAAATACCCCT-GATTTACAAAATTAC-AGAAATACC-CTTGATTTGT-AGATTTTCC
1 AATTACCAAAACACCCCTAG-TTTACAAAATTACTA-AAATACCAC-TGATTTGTGAAATTAT-C
31231405 AAAACACCCT
62 AAAACACCCT
31231415 TGTAGGATGA
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
80 8 0.13
81 52 0.87
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (81 bp):
AATTACCAAAACACCCCTAGTTTACAAAATTACTAAAATACCACTGATTTGTGAAATTATCAAAA
CACCCTCAATTTGTAA
Found at i:31232243 original size:20 final size:20
Alignment explanation
Indices: 31232218--31232304 Score: 122
Period size: 20 Copynumber: 4.3 Consensus size: 20
31232208 GATATGATAT
*
31232218 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGAAATGC
*
31232238 ACATGATATGTATAAAATGC
1 ACATGATATGTATGAAATGC
31232258 ACATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
31232278 GCATGATATGTATGAAATGC
1 ACATGATATGTATGAAATGC
*
31232298 GCATGAT
1 ACATGAT
31232305 GTATTCATAA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 60 0.97
21 2 0.03
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (20 bp):
ACATGATATGTATGAAATGC
Found at i:31232451 original size:25 final size:26
Alignment explanation
Indices: 31232354--31232489 Score: 190
Period size: 26 Copynumber: 5.3 Consensus size: 26
31232344 GAGGAAGTGC
31232354 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
31232380 AAAAGCGCTTATGCCCCAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
31232406 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
31232432 AAAAGGGCTT-TGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
31232457 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
31232480 AAAAGAGGCT
1 AAAAG-GGCT
31232490 AGGCCTCTAG
Statistics
Matches: 99, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
23 5 0.05
24 7 0.07
25 29 0.29
26 58 0.59
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:31232681 original size:42 final size:42
Alignment explanation
Indices: 31232622--31232715 Score: 134
Period size: 42 Copynumber: 2.2 Consensus size: 42
31232612 TAGTCTCCCC
* ** *
31232622 AAATGGGCTTGCATACATTCATTGGTATTTCATATGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
* *
31232664 AAATGGGCTTGTATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
31232706 AAATGGGCTT
1 AAATGGGCTT
31232716 ATGGGCCATA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATATGATATTG
Found at i:31232772 original size:31 final size:31
Alignment explanation
Indices: 31232737--31232846 Score: 202
Period size: 31 Copynumber: 3.5 Consensus size: 31
31232727 CGTTTATAGT
*
31232737 AAAGGCTTCGGCCCAGTGAAATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
31232768 AAAGGCTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
31232799 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
31232830 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
31232847 AACCGTTAAA
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 76 1.00
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:31234470 original size:23 final size:24
Alignment explanation
Indices: 31234404--31234494 Score: 77
Period size: 23 Copynumber: 4.0 Consensus size: 24
31234394 TACCGATATA
* *
31234404 TCAGATCGTA-AGAGCTTACTATTT
1 TCAGCTCGTATAGAGCTTACT-GTT
* *
31234428 TCAGCTCAT-TGGAG-TATACTGTT
1 TCAGCTCGTATAGAGCT-TACTGTT
31234451 TCAGCTCGTAT-GAGCTTACTG-T
1 TCAGCTCGTATAGAGCTTACTGTT
*
31234473 TCAGCT-GGATAGAGCTTACTGT
1 TCAGCTCGTATAGAGCTTACTGT
31234495 GCATCAGTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
21 3 0.05
22 17 0.31
23 19 0.35
24 16 0.29
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (24 bp):
TCAGCTCGTATAGAGCTTACTGTT
Found at i:31234478 original size:22 final size:22
Alignment explanation
Indices: 31234444--31234494 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
31234434 CATTGGAGTA
*
31234444 TACTGTTTCAGCTCG-TATGAGCT
1 TACTG-TTCAGCTGGATA-GAGCT
31234467 TACTGTTCAGCTGGATAGAGCT
1 TACTGTTCAGCTGGATAGAGCT
31234489 TACTGT
1 TACTGT
31234495 GCATCAGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 19 0.73
23 7 0.27
ACGTcount: A:0.20, C:0.20, G:0.24, T:0.37
Consensus pattern (22 bp):
TACTGTTCAGCTGGATAGAGCT
Found at i:31236514 original size:18 final size:17
Alignment explanation
Indices: 31236482--31236515 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
31236472 CCCATTCATA
*
31236482 TGTCTGTATGAATTTAG
1 TGTCTGTAGGAATTTAG
31236499 TGTCTAGTAGGAATTTA
1 TGTCT-GTAGGAATTTA
31236516 CCTATTAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.26, C:0.06, G:0.24, T:0.44
Consensus pattern (17 bp):
TGTCTGTAGGAATTTAG
Found at i:31242923 original size:27 final size:27
Alignment explanation
Indices: 31242870--31242924 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
31242860 ATTTTATCAA
* **
31242870 GATAGTAAATACGGGATAGTCTGCTGG
1 GATAGTAAACACGGGATAGTCAACTGG
*
31242897 GATAGTAAACACGGGGTAGTCAACTGG
1 GATAGTAAACACGGGATAGTCAACTGG
31242924 G
1 G
31242925 TCAATAAACA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.13, G:0.35, T:0.22
Consensus pattern (27 bp):
GATAGTAAACACGGGATAGTCAACTGG
Found at i:31263209 original size:989 final size:989
Alignment explanation
Indices: 31257886--31274117 Score: 32177
Period size: 988 Copynumber: 16.4 Consensus size: 989
31257876 ATCCGAGGAC
31257886 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
*
31257951 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGAGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31258016 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31258081 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31258146 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31258211 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31258276 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31258341 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
*
31258406 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAGATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31258471 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
*
31258536 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTATTGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
* *
31258601 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTTTTCCTTCTACGTTTATTGCTTTACATTTTCT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31258666 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31258731 TTCTCAAGC-TTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31258795 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31258860 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31258874 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31258939 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31259004 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31259069 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31259134 TGGACACAAATG-TTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31259198 ACGTGTCCAATTAGG-CCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31259262 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31259327 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31259392 TTTTCTTCCTCTTCTTCTAGGGTTCCTTA-TTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31259456 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
*
31259521 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATATATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31259586 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31259651 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31259716 TTCTCAAGC-TTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31259780 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31259845 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31259859 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31259924 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGT-GGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31259988 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31260053 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31260118 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31260183 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31260248 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31260313 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31260378 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31260443 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31260508 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31260573 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTT-TTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31260637 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31260702 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31260767 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31260832 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31260846 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31260911 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31260976 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31261041 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31261106 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31261171 ACGTGTCCAATTAGG-CCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31261235 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31261300 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31261365 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31261430 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31261495 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31261560 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31261625 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31261690 TTCTCAAGC-TTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31261754 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31261819 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31261833 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31261898 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31261963 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31262028 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31262093 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31262158 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31262223 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31262288 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31262353 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31262418 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31262483 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31262548 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31262613 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31262678 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
*
31262743 ATAAGTAGCTAAACTTTTAAGATGGTTAGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31262808 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31262822 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
*
31262887 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCTCTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31262952 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31263017 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31263082 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31263147 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31263212 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31263277 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31263342 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31263407 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31263472 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31263537 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31263602 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31263667 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31263732 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31263797 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31263811 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31263876 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31263941 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31264006 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31264071 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31264136 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31264201 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31264266 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31264331 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31264396 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31264461 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31264526 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31264591 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31264656 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31264721 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31264786 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31264800 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31264865 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31264930 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31264995 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31265060 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31265125 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31265190 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31265255 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31265320 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31265385 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31265450 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31265515 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31265580 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31265645 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31265710 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31265775 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31265789 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31265854 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31265919 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31265984 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31266049 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31266114 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31266179 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31266244 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31266309 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31266374 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31266439 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31266504 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31266569 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31266634 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31266699 ATAAGTAGCTAAACTTTTAAGATGGTT-GTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31266763 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31266777 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31266842 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31266907 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31266972 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31267037 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31267102 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31267167 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31267232 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31267297 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31267362 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31267427 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31267492 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31267557 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31267622 TTCTCAAGC-TTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31267686 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31267751 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31267765 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31267830 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31267895 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31267960 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31268025 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31268090 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31268155 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31268220 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31268285 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31268350 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31268415 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31268480 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31268545 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31268610 TTCTCAAGC-TTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31268674 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31268739 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31268753 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31268818 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31268883 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31268948 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31269013 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31269078 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31269143 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31269208 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31269273 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31269338 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31269403 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31269468 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31269533 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31269598 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31269663 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31269728 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31269742 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31269807 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31269872 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31269937 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31270002 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31270067 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31270132 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31270197 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAG-TTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31270261 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31270326 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31270391 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31270456 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31270521 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31270586 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31270651 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31270716 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31270730 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31270795 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31270860 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31270925 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31270990 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31271055 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31271120 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31271185 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31271250 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31271315 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
*
31271380 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATATATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31271445 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31271510 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31271575 TTCTCAAGC-TTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31271639 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31271704 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31271718 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31271783 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACT-GGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31271847 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31271912 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31271977 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31272042 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31272107 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31272172 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31272237 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31272302 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31272367 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31272432 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31272497 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31272562 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31272627 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31272692 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31272706 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
31272771 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31272836 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
31272901 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
196 TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
31272966 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
261 TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
31273031 ACGTGTCCAATTAGG-CCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
326 ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
31273095 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
391 TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
31273160 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
456 TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
31273225 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
521 TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
31273290 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
586 ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
31273355 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
651 TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
31273420 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
716 TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
31273485 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
781 TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
31273550 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTG-TTTCACGGTTAGTTTTATTTCCAGC
846 TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
31273614 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATG-GGTCAGTTGA-TTTTGGATGAAA
911 ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
31273677 GACCAAATTGTAAT
976 GACCAAATTGTAAT
31273691 AAACCCTAGGGA-TTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTC-AAAAACATATAGAA
1 AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
*
31273754 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCTCTGGGGCAAGTGGGAGACTGATGGATCTG
66 GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
31273819 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTTGATTAATAAA
131 ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGA-TTGATTAATAAA
31273884 ATTATTCATGAATTACAACTAATACTTTGTAATACTATCCTCACACGGTTTTTGCATGCAAAGAA
195 ATTATTCATGAATTAC-ACTAATACTTTGT-ATACTATCCTCACACGGTTTTTGCATGCAAAG-A
31273949 AAAATGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAA
257 AAAATGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAA
31274014 TATGACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGC-ATTTATATGAT
322 TATGACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGAT
31274078 TTTATGCTACTTTTGGGACCC-AAATGGCCAAATGCATTAT
387 TTTATGCTACTTTTGGGACCCAAAATGGCCAAATGCATTAT
31274118 ATTTGTTAAA
Statistics
Matches: 15212, Mismatches: 14, Indels: 38
1.00 0.00 0.00
Matches are distributed among these distances:
983 130 0.01
984 224 0.01
985 663 0.04
986 582 0.04
987 2405 0.16
988 5952 0.39
989 5256 0.35
ACGTcount: A:0.27, C:0.15, G:0.16, T:0.42
Consensus pattern (989 bp):
AAACCCTAGGGATTTGTTTTGCCAAGACTCTACTAGTTAAAGAGCTATTCAAAAAACATATAGAA
GGGTATAGAAATGTGAAACATGACTTATTTGCTTCACTGGGGCAAGTGGGAGACTGATGGATCTG
ATGCCTTAATGTAGTATTCTTGTTTAAGTACACTTGTAACTCTTCAAACAGATTGATTAATAAAA
TTATTCATGAATTACACTAATACTTTGTATACTATCCTCACACGGTTTTTGCATGCAAAGAAAAA
TGGACACAAATGTTTCTCACTAGTTATCTAATGTTTAACTAATATTAATGATCTTTCATAATATG
ACGTGTCCAATTAGGCCCCTTATTACACTTAACGAGACTATTTCTGAGCAATTTATATGATTTTA
TGCTACTTTTGGGACCCAAAATGGCCAAATGCATTATCGAGAACTTAATGGCTAATTGAGTGTTG
TAGGGAATCATCGGAGGCCACATTACCTTAGTTTTGACTTAGTTTTCTCTAGGTTTTCTCTTAGC
TTTTCTTCCTCTTCTTCTAGGGTTCCTTATTTTCACTTTCTTTGTTATAAATTTTACATTTCTCA
ACAACTTTTCTTCTTGTTTTAGTTGTTCTTAGAGTTAGTTAAGTTAGTTGTCACTGTAGCTTAGG
TTTATTTGCACATTTAGTCCTTATACCTTGGTTGTAAGACATTTTCAAATTTAGTTTAATGTATT
TTAGTTTATTTTACTTTGTATTTGTTAAAGTTTGTTCCTTCTACGTTTATTGCTTTACATTTTAT
TGTTTAATGCTTCTCTTTACATGCCTTTTAAGTTTTCTTGCATAAAAATCTCAACTTTTATCTTT
TTCTCAAGCTTTTTTTTAATGGCTTCTTTGCCTTTTTTGTTTTCACGGTTAGTTTTATTTCCAGC
ATAAGTAGCTAAACTTTTAAGATGGTTGGTTGATGGAGATGTGGTCAGTTGATTTTTGGATGAAA
GACCAAATTGTAAT
Found at i:31280355 original size:55 final size:55
Alignment explanation
Indices: 31280238--31280357 Score: 150
Period size: 55 Copynumber: 2.2 Consensus size: 55
31280228 TGTGATATGG
* * * *
31280238 CCGTGGTCGAGCTTGCCAAAACAACACAGGTGTGCGACACGCCCGTGTGGAAGAA
1 CCGTGGTCGAGCCTGCCAAAACAACACAGGCGTGCGACACGCCCGTGTCGAACAA
* * * * * *
31280293 CCATGGTCGAGCCTGCTAAAACAGCACCGGCGTGCGACACGCCCGTGTCTAACAC
1 CCGTGGTCGAGCCTGCCAAAACAACACAGGCGTGCGACACGCCCGTGTCGAACAA
31280348 CCGTGGTCGA
1 CCGTGGTCGA
31280358 ACCTACCCAA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.24, C:0.32, G:0.29, T:0.15
Consensus pattern (55 bp):
CCGTGGTCGAGCCTGCCAAAACAACACAGGCGTGCGACACGCCCGTGTCGAACAA
Found at i:31286733 original size:26 final size:24
Alignment explanation
Indices: 31286718--31286775 Score: 82
Period size: 24 Copynumber: 2.4 Consensus size: 24
31286708 TATTTAAGTA
31286718 AATATATTAATATTATTATATTAT
1 AATATATTAATATTATTATATTAT
*
31286742 AATATATTATTA-TATTATATTATT
1 AATATATTAATATTATTATATTA-T
*
31286766 ATTATATTAA
1 AATATATTAA
31286776 AATATAAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
23 10 0.33
24 20 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (24 bp):
AATATATTAATATTATTATATTAT
Found at i:31286736 original size:3 final size:3
Alignment explanation
Indices: 31286722--31286774 Score: 51
Period size: 3 Copynumber: 18.7 Consensus size: 3
31286712 TAAGTAAATA
* *
31286722 TAT TAA TAT TAT TA- TAT TAT AAT ATAT TAT TA- TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
31286765 TAT TA- TAT TA
1 TAT TAT TAT TA
31286775 AAATATAAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
2 8 0.20
3 31 0.76
4 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:31286738 original size:8 final size:8
Alignment explanation
Indices: 31286722--31286774 Score: 63
Period size: 8 Copynumber: 6.2 Consensus size: 8
31286712 TAAGTAAATA
31286722 TATTAATAT
1 TATT-ATAT
31286731 TATTATAT
1 TATTATAT
31286739 TATAATATAT
1 TAT--TATAT
31286749 TATTATAT
1 TATTATAT
31286757 TA-TATTAT
1 TATTA-TAT
31286765 TATTATAT
1 TATTATAT
31286773 TA
1 TA
31286775 AAATATAAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
7 2 0.05
8 24 0.60
9 6 0.15
10 8 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (8 bp):
TATTATAT
Found at i:31286741 original size:5 final size:5
Alignment explanation
Indices: 31286731--31286774 Score: 56
Period size: 5 Copynumber: 9.0 Consensus size: 5
31286721 ATATTAATAT
*
31286731 TATTA TATTA TAATA TA-T- TATTA TATTA TATTA TTATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA -TATTA TATTA
31286775 AAATATAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 26 0.74
6 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:31286754 original size:13 final size:13
Alignment explanation
Indices: 31286718--31286772 Score: 60
Period size: 13 Copynumber: 4.4 Consensus size: 13
31286708 TATTTAAGTA
*
31286718 AATATATTAATAT
1 AATATATTATTAT
*
31286731 TAT-TA-TATTAT
1 AATATATTATTAT
31286742 AATATATTATTAT
1 AATATATTATTAT
*
31286755 ATTATATTATTAT
1 AATATATTATTAT
*
31286768 TATAT
1 AATAT
31286773 TAAAATATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
11 7 0.21
12 4 0.12
13 23 0.68
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATATATTATTAT
Found at i:31288542 original size:19 final size:20
Alignment explanation
Indices: 31288505--31288542 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
31288495 AGAGGGATAA
*
31288505 TATGATTAAATTATGATGTC
1 TATGATTAAATAATGATGTC
*
31288525 TATG-TTAAATAATTATGT
1 TATGATTAAATAATGATGT
31288543 AAATGTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (20 bp):
TATGATTAAATAATGATGTC
Found at i:31292871 original size:24 final size:24
Alignment explanation
Indices: 31292844--31292892 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
31292834 CGAGGTCTCC
31292844 CATGGAATATTCTGTCTCTCAACG
1 CATGGAATATTCTGTCTCTCAACG
*
31292868 CATGGAATATTCTGTCTCTCGACG
1 CATGGAATATTCTGTCTCTCAACG
31292892 C
1 C
31292893 TTCAAGTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (24 bp):
CATGGAATATTCTGTCTCTCAACG
Found at i:31296154 original size:40 final size:39
Alignment explanation
Indices: 31296110--31296334 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
31296100 GCCACTAGCT
*
31296110 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
31296150 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
31296189 CAAATGCCTTCGAGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
31296229 CAAACGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
31296269 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
31296309 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
31296335 TATCATCCGA
Statistics
Matches: 163, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 39 0.24
40 124 0.76
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:31296208 original size:79 final size:78
Alignment explanation
Indices: 31296110--31296334 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
31296100 GCCACTAGCT
*
31296110 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
*
31296175 TATAATAACTCGCA
65 TATAATAACTCACA
* * * * *
31296189 CAAATGCCTTCGAGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
* *
31296254 ATATAGTAGCTCACA
65 -TATAATAACTCACA
* * ** *
31296269 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCTCAAATG-CTCTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTAGCACAAATGCCT-TCGGGACTTAGCCCG
31296333 GT
64 GT
31296335 TATCATCCGA
Statistics
Matches: 124, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
79 63 0.51
80 61 0.49
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (78 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGT
ATAATAACTCACA
Found at i:31304209 original size:40 final size:39
Alignment explanation
Indices: 31304165--31304389 Score: 272
Period size: 40 Copynumber: 5.7 Consensus size: 39
31304155 GCCACTAGCT
*
31304165 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
31304205 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
31304244 CAAATGCCTTCGGGACTTAGCCCGGATATAATAGCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
31304284 CAAACGCCTTCGGGACTTAGGCCGGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
31304324 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
31304364 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
31304390 TTTCATCCGA
Statistics
Matches: 162, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 40 0.25
40 122 0.75
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:31313949 original size:16 final size:16
Alignment explanation
Indices: 31313928--31313963 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
31313918 AATGAAAGAG
*
31313928 AGAAATGAATTCATTT
1 AGAAATGAAATCATTT
31313944 AGAAATGAAATCATTT
1 AGAAATGAAATCATTT
31313960 AGAA
1 AGAA
31313964 TTCAACAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.50, C:0.06, G:0.14, T:0.31
Consensus pattern (16 bp):
AGAAATGAAATCATTT
Found at i:31321088 original size:21 final size:19
Alignment explanation
Indices: 31321053--31321149 Score: 59
Period size: 21 Copynumber: 4.8 Consensus size: 19
31321043 ATGTGCAAGT
* *
31321053 AGAGGCACCGTAGTGTGAATC
1 AGAGACACCGAAGTGT-AA-C
*
31321074 AGAGACACTGAAGTGTAAC
1 AGAGACACCGAAGTGTAAC
* *
31321093 AGAGGCACCGAAGTGCATAAG
1 AGAGACACCGAAGTG--TAAC
* *
31321114 AGAGGCACCAAAGTGCATAAC
1 AGAGACACCGAAGTG--TAAC
* *
31321135 AGAGGCACTGAAGTG
1 AGAGACACCGAAGTG
31321150 CAAATCCCGT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
19 14 0.22
20 2 0.03
21 48 0.75
ACGTcount: A:0.37, C:0.19, G:0.31, T:0.13
Consensus pattern (19 bp):
AGAGACACCGAAGTGTAAC
Found at i:31321150 original size:21 final size:21
Alignment explanation
Indices: 31321073--31321151 Score: 99
Period size: 21 Copynumber: 3.9 Consensus size: 21
31321063 TAGTGTGAAT
* *
31321073 CAGAGACACTGAAGTG--TAA
1 CAGAGGCACCGAAGTGCATAA
31321092 CAGAGGCACCGAAGTGCATAA
1 CAGAGGCACCGAAGTGCATAA
* *
31321113 GAGAGGCACCAAAGTGCATAA
1 CAGAGGCACCGAAGTGCATAA
*
31321134 CAGAGGCACTGAAGTGCA
1 CAGAGGCACCGAAGTGCA
31321152 AATCCCGTAC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
19 14 0.27
21 37 0.73
ACGTcount: A:0.39, C:0.20, G:0.29, T:0.11
Consensus pattern (21 bp):
CAGAGGCACCGAAGTGCATAA
Found at i:31321887 original size:26 final size:26
Alignment explanation
Indices: 31321850--31321907 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
31321840 TTATACAAAT
31321850 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
31321876 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
31321902 TGATAA
1 TGATAA
31321908 GAATTTCATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:31328338 original size:39 final size:39
Alignment explanation
Indices: 31328295--31328422 Score: 188
Period size: 39 Copynumber: 3.3 Consensus size: 39
31328285 CGGACTTAGG
*
31328295 GTCCGCAGGCTATGTGCTGGAATTAT-TTCCGGGCTTAAT
1 GTCCGCAGGCTATGTGCTGGAAATATGTT-CGGGCTTAAT
31328334 GTCCGCAGGCTATGTGCTGGAAATATGTTCGGGCTTAAT
1 GTCCGCAGGCTATGTGCTGGAAATATGTTCGGGCTTAAT
** *
31328373 GTCCGCAGGCTACATGCTGGAAATATGTTCGGGC-TAAA
1 GTCCGCAGGCTATGTGCTGGAAATATGTTCGGGCTTAAT
31328411 GTCCCGCAGGCT
1 GT-CCGCAGGCT
31328423 TCGAGCTGGT
Statistics
Matches: 83, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
38 5 0.06
39 76 0.92
40 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.30, T:0.28
Consensus pattern (39 bp):
GTCCGCAGGCTATGTGCTGGAAATATGTTCGGGCTTAAT
Found at i:31330313 original size:20 final size:20
Alignment explanation
Indices: 31330278--31330320 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
31330268 AATATTTTAA
*
31330278 TAAAATATTAAGAGTATTACT
1 TAAAATATTAAAAGTATTA-T
31330299 TAAAAT-TTAAAAGTATTAT
1 TAAAATATTAAAAGTATTAT
31330318 TAA
1 TAA
31330321 TGTTAAACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 11 0.52
21 6 0.29
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (20 bp):
TAAAATATTAAAAGTATTAT
Found at i:31332523 original size:815 final size:815
Alignment explanation
Indices: 31330954--31332588 Score: 3236
Period size: 815 Copynumber: 2.0 Consensus size: 815
31330944 AATTTCCTTA
31330954 CGTGTAAATTTATTACGAGAGTAGCTCGACCAAAACCCGCCAATCAAATGGTCTTATAATGACAC
1 CGTGTAAATTTATTACGAGAGTAGCTCGACCAAAACCCGCCAATCAAATGGTCTTATAATGACAC
31331019 TTCTAGAATTTAACTTCTTGATAATTTTACCATCTTGAAAATTTTGACTCTAACCTGAACACTAA
66 TTCTAGAATTTAACTTCTTGATAATTTTACCATCTTGAAAATTTTGACTCTAACCTGAACACTAA
31331084 ATTATATAGTTGTTTAAGTTAGATTATTCACCCACTTAACATAACCCATCTGCCATTTCACTCAA
131 ATTATATAGTTGTTTAAGTTAGATTATTCACCCACTTAACATAACCCATCTGCCATTTCACTCAA
31331149 CCTATGATCAAAATATCCTAATTAACTATGAATTACTAGTATCTTGATATAACAAAATATAATTT
196 CCTATGATCAAAATATCCTAATTAACTATGAATTACTAGTATCTTGATATAACAAAATATAATTT
*
31331214 TAAAATTTTCATTAATCAAATTTGCAAGAATTACTTTGATCACATTCAAATATATTTTCAAATGT
261 TAAAATTTTCATTAATCAAATTTACAAGAATTACTTTGATCACATTCAAATATATTTTCAAATGT
31331279 TACAAATTTAAAAATAATGTTTCTAAATGCCTCATGAAATTTACAAAAAAAAATGAATACCCTCA
326 TACAAATTTAAAAATAATGTTTCTAAATGCCTCATGAAATTTACAAAAAAAAATGAATACCCTCA
31331344 CGCCCTTTAAAAATGTTTCTAAGTCAAAATACTACAATTTTCCTACAGTCTCAAGACATAAGATC
391 CGCCCTTTAAAAATGTTTCTAAGTCAAAATACTACAATTTTCCTACAGTCTCAAGACATAAGATC
31331409 ATATGTCTCGTGATATAAAACTTCAAAGGCAAACTTTGCTTTAGGGGAGTAGTGTAACACCTCTA
456 ATATGTCTCGTGATATAAAACTTCAAAGGCAAACTTTGCTTTAGGGGAGTAGTGTAACACCTCTA
31331474 AATCATATCCGTTGTCAGAATAGGGTTATGAGGTATTATCGATCAAAACATAACACGTATATCAT
521 AATCATATCCGTTGTCAGAATAGGGTTATGAGGTATTATCGATCAAAACATAACACGTATATCAT
31331539 ACATTTATCATCATAAAGCATTCATTCTCATACATCATTTAATACAACCACATTGTCCCTTGTAA
586 ACATTTATCATCATAAAGCATTCATTCTCATACATCATTTAATACAACCACATTGTCCCTTGTAA
31331604 AGGCCTACGAGGCCTTAAACAAGCTTTAGAAGTGATTCAGGACTAAACCGATATAATACGAAAAT
651 AGGCCTACGAGGCCTTAAACAAGCTTTAGAAGTGATTCAGGACTAAACCGATATAATACGAAAAT
*
31331669 TTTGGGAACTTTAGAAATTTTTCATCTATTCAAGGGTCATACGCCCGTGTGAGCAAGCCGTGTGC
716 TTTGGGAACTTTAGAAATTTTTCATCTATTCAAGGGTCATACGCCCGTGTGAGCAAGCCGTATGC
31331734 CTCACATGGCTAGTAGACACGCCCGTGTCTTAGGC
781 CTCACATGGCTAGTAGACACGCCCGTGTCTTAGGC
31331769 CGTGTAAATTTATTACGAGAGTAGCTCGACCAAAACCCGCCAATCAAATGGTCTTATAATGACAC
1 CGTGTAAATTTATTACGAGAGTAGCTCGACCAAAACCCGCCAATCAAATGGTCTTATAATGACAC
31331834 TTCTAGAATTTAACTTCTTGATAATTTTACCATCTTGAAAATTTTGACTCTAACCTGAACACTAA
66 TTCTAGAATTTAACTTCTTGATAATTTTACCATCTTGAAAATTTTGACTCTAACCTGAACACTAA
31331899 ATTATATAGTTGTTTAAGTTAGATTATTCACCCACTTAACATAACCCATCTGCCATTTCACTCAA
131 ATTATATAGTTGTTTAAGTTAGATTATTCACCCACTTAACATAACCCATCTGCCATTTCACTCAA
31331964 CCTATGATCAAAATATCCTAATTAACTATGAATTACTAGTATCTTGATATAACAAAATATAATTT
196 CCTATGATCAAAATATCCTAATTAACTATGAATTACTAGTATCTTGATATAACAAAATATAATTT
31332029 TAAAATTTTCATTAATCAAATTTACAAGAATTACTTTGATCACATTCAAATATATTTTCAAATGT
261 TAAAATTTTCATTAATCAAATTTACAAGAATTACTTTGATCACATTCAAATATATTTTCAAATGT
31332094 TACAAATTTAAAAATAATGTTTCTAAATGCCTCATGAAATTTACAAAAAAAAAATGAATACCCTC
326 TACAAATTTAAAAATAATGTTTCTAAATGCCTCATGAAATTTAC-AAAAAAAAATGAATACCCTC
31332159 ACGCCCTTTAAAAATGTTTCTAAGTCAAAATACTACAATTTTCCTACAGTCTCAAGACATAAGAT
390 ACGCCCTTTAAAAATGTTTCTAAGTCAAAATACTACAATTTTCCTACAGTCTCAAGACATAAGAT
31332224 CATATGTCTCGTGATATAAAACTTCAAAGGCAAACTTTGCTTTAGGGGAGTAGTGTAACACCTCT
455 CATATGTCTCGTGATATAAAACTTCAAAGGCAAACTTTGCTTTAGGGGAGTAGTGTAACACCTCT
31332289 AAATCATATCCGTTGTCAGAATAGGGTTATGAGGTATTATCGATCAAAACATAACACGTATATCA
520 AAATCATATCCGTTGTCAGAATAGGGTTATGAGGTATTATCGATCAAAACATAACACGTATATCA
31332354 TACATTTATCATCATAAAGCATTCATTCTCATACATCATTTAATACAACCACATTGTCCCTTGTA
585 TACATTTATCATCATAAAGCATTCATTCTCATACATCATTTAATACAACCACATTGTCCCTTGTA
31332419 AAGGCCTACGAGGCCTTAAACAAGCTTTAGAAGTGATTCAGGACTAAACCGATATAATACGAAAA
650 AAGGCCTACGAGGCCTTAAACAAGCTTTAGAAGTGATTCAGGACTAAACCGATATAATACGAAAA
31332484 TTTTGGGAACTTTAGAAA-TTTTCATCTATTCAAGGGTCATACGCCCGTGTGAGCAAGCCGTATG
715 TTTTGGGAACTTTAGAAATTTTTCATCTATTCAAGGGTCATACGCCCGTGTGAGCAAGCCGTATG
31332548 CCTCACATGGCTAGTAGACACGCCCGTGTCTTAGGC
780 CCTCACATGGCTAGTAGACACGCCCGTGTCTTAGGC
31332584 CGTGT
1 CGTGT
31332589 GGGAATAGGG
Statistics
Matches: 817, Mismatches: 2, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
815 454 0.56
816 363 0.44
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (815 bp):
CGTGTAAATTTATTACGAGAGTAGCTCGACCAAAACCCGCCAATCAAATGGTCTTATAATGACAC
TTCTAGAATTTAACTTCTTGATAATTTTACCATCTTGAAAATTTTGACTCTAACCTGAACACTAA
ATTATATAGTTGTTTAAGTTAGATTATTCACCCACTTAACATAACCCATCTGCCATTTCACTCAA
CCTATGATCAAAATATCCTAATTAACTATGAATTACTAGTATCTTGATATAACAAAATATAATTT
TAAAATTTTCATTAATCAAATTTACAAGAATTACTTTGATCACATTCAAATATATTTTCAAATGT
TACAAATTTAAAAATAATGTTTCTAAATGCCTCATGAAATTTACAAAAAAAAATGAATACCCTCA
CGCCCTTTAAAAATGTTTCTAAGTCAAAATACTACAATTTTCCTACAGTCTCAAGACATAAGATC
ATATGTCTCGTGATATAAAACTTCAAAGGCAAACTTTGCTTTAGGGGAGTAGTGTAACACCTCTA
AATCATATCCGTTGTCAGAATAGGGTTATGAGGTATTATCGATCAAAACATAACACGTATATCAT
ACATTTATCATCATAAAGCATTCATTCTCATACATCATTTAATACAACCACATTGTCCCTTGTAA
AGGCCTACGAGGCCTTAAACAAGCTTTAGAAGTGATTCAGGACTAAACCGATATAATACGAAAAT
TTTGGGAACTTTAGAAATTTTTCATCTATTCAAGGGTCATACGCCCGTGTGAGCAAGCCGTATGC
CTCACATGGCTAGTAGACACGCCCGTGTCTTAGGC
Found at i:31340659 original size:25 final size:27
Alignment explanation
Indices: 31340608--31340668 Score: 90
Period size: 25 Copynumber: 2.3 Consensus size: 27
31340598 TGGAAATCAG
* *
31340608 ATTCATAATTATATGTATTTATGACAC
1 ATTCATAATAATATGTATTTATAACAC
31340635 ATTCATAA-AATAT-TATTTATAACAC
1 ATTCATAATAATATGTATTTATAACAC
31340660 ATTCATAAT
1 ATTCATAAT
31340669 GCTTAACTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
25 19 0.61
26 4 0.13
27 8 0.26
ACGTcount: A:0.43, C:0.11, G:0.03, T:0.43
Consensus pattern (27 bp):
ATTCATAATAATATGTATTTATAACAC
Found at i:31345985 original size:10 final size:12
Alignment explanation
Indices: 31345962--31346013 Score: 54
Period size: 12 Copynumber: 4.4 Consensus size: 12
31345952 TGAATCCACC
31345962 AAAAAATTATAT
1 AAAAAATTATAT
*
31345974 AAAAAATAATA-
1 AAAAAATTATAT
31345985 AACAAAATT-TAT
1 AA-AAAATTATAT
**
31345997 AAGGAATTATAT
1 AAAAAATTATAT
31346009 AAAAA
1 AAAAA
31346014 TAATAATATA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
11 8 0.26
12 23 0.74
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (12 bp):
AAAAAATTATAT
Found at i:31357175 original size:60 final size:61
Alignment explanation
Indices: 31357077--31357209 Score: 196
Period size: 60 Copynumber: 2.2 Consensus size: 61
31357067 ATTAGAATTA
* * *
31357077 ATCACATTAATATTAAATTAATAAAATATTATCTAGATAAATATT-TATTAAATTTAATAT
1 ATCATATTAATATTAAATTAATAAAATACTATCTAGATAAATATTAAATTAAATTTAATAT
* *
31357137 ATCATATTAATATTAAATTAATAAAATACTATCTAGATAAATATTAAATTTAATTTAATGT
1 ATCATATTAATATTAAATTAATAAAATACTATCTAGATAAATATTAAATTAAATTTAATAT
* *
31357198 CTTATATTAATA
1 ATCATATTAATA
31357210 ACTAGAAAAA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
60 43 0.66
61 22 0.34
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (61 bp):
ATCATATTAATATTAAATTAATAAAATACTATCTAGATAAATATTAAATTAAATTTAATAT
Found at i:31358079 original size:31 final size:31
Alignment explanation
Indices: 31358044--31358103 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
31358034 TTTACGAAAG
31358044 TAATTCAACCAACTACTTTGTCCAATGACTT
1 TAATTCAACCAACTACTTTGTCCAATGACTT
* *
31358075 TAATTCAATCAACTGCTTTGTCCAATGAC
1 TAATTCAACCAACTACTTTGTCCAATGAC
31358104 CTCGCCATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.08, T:0.35
Consensus pattern (31 bp):
TAATTCAACCAACTACTTTGTCCAATGACTT
Found at i:31370569 original size:12 final size:12
Alignment explanation
Indices: 31370552--31370585 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
31370542 AGAATATTTC
31370552 ATTTTTTAATTA
1 ATTTTTTAATTA
31370564 ATTTTTTTAATTA
1 A-TTTTTTAATTA
*
31370577 ATTCTTTAA
1 ATTTTTTAA
31370586 AAATATTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 8 0.40
13 12 0.60
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (12 bp):
ATTTTTTAATTA
Found at i:31370571 original size:13 final size:13
Alignment explanation
Indices: 31370553--31370579 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
31370543 GAATATTTCA
31370553 TTTTTTAATTAAT
1 TTTTTTAATTAAT
31370566 TTTTTTAATTAAT
1 TTTTTTAATTAAT
31370579 T
1 T
31370580 CTTTAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTTTAATTAAT
Found at i:31372924 original size:69 final size:69
Alignment explanation
Indices: 31372844--31372978 Score: 225
Period size: 69 Copynumber: 2.0 Consensus size: 69
31372834 TACATCAATC
*
31372844 GAAACTATTCAAGAATAACAGGAGCTTCTTCTCAAAATATGAATTTAACTGTTCAAGCTCAATTA
1 GAAACTATTCAAGAATAACACGAGCTTCTTCTCAAAATATGAATTTAACTGTTCAAGCTCAATTA
31372909 AATT
66 AATT
* * * *
31372913 GAAACTATTCAAGAATAACACGAGCTTTTTCTCAAAATATGATTTTAATTGTTCAAGCTTAATTA
1 GAAACTATTCAAGAATAACACGAGCTTCTTCTCAAAATATGAATTTAACTGTTCAAGCTCAATTA
31372978 A
66 A
31372979 CAAATAACTA
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.40, C:0.15, G:0.11, T:0.34
Consensus pattern (69 bp):
GAAACTATTCAAGAATAACACGAGCTTCTTCTCAAAATATGAATTTAACTGTTCAAGCTCAATTA
AATT
Found at i:31374008 original size:6 final size:6
Alignment explanation
Indices: 31373997--31374021 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
31373987 GAAGTCTAAG
31373997 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
31374022 CACAAATGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:31375659 original size:47 final size:47
Alignment explanation
Indices: 31375587--31375717 Score: 181
Period size: 47 Copynumber: 2.8 Consensus size: 47
31375577 TACAATCGAT
* * *
31375587 AAGTACCTATACCATGGCCCATAGCCAAATCAATGTAACTTATCCCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
* * * *
31375634 GAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCCTCTCT
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
* *
31375681 AAATACCTATACCATGGCCCGTAACCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTA
31375718 TTTTTTGCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 74 1.00
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.22
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCCCG
Found at i:31383070 original size:69 final size:68
Alignment explanation
Indices: 31382954--31383084 Score: 199
Period size: 69 Copynumber: 1.9 Consensus size: 68
31382944 ATATAAAATG
* *
31382954 ACTAGAGAATACTCTCATAGCTCACTTCTTCACTATTCTCATAAAAAAATTAATTTTTATCCCAC
1 ACTAGAAAATACTCTCATAGCTCACTTCTTCACTATTCTCAT-AAAAAATTAATTTTAATCCCAC
31383019 ATTA
65 ATTA
* * * *
31383023 ACTAGAAAATACTCTCATAGTTCACTTCTTCATTATTTTCATGAAAAATTAATTTTAATCCC
1 ACTAGAAAATACTCTCATAGCTCACTTCTTCACTATTCTCATAAAAAATTAATTTTAATCCC
31383085 TTATCGTTAA
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
68 18 0.32
69 38 0.68
ACGTcount: A:0.36, C:0.21, G:0.05, T:0.38
Consensus pattern (68 bp):
ACTAGAAAATACTCTCATAGCTCACTTCTTCACTATTCTCATAAAAAATTAATTTTAATCCCACA
TTA
Found at i:31383189 original size:6 final size:6
Alignment explanation
Indices: 31383178--31383228 Score: 93
Period size: 6 Copynumber: 8.5 Consensus size: 6
31383168 ATTTTTATAA
*
31383178 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAAGTT
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT
31383226 AAA
1 AAA
31383229 CAAATATTAG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (6 bp):
AAATTT
Found at i:31383617 original size:19 final size:18
Alignment explanation
Indices: 31383583--31383633 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
31383573 GTTTTGAGTT
31383583 TTTA-TTTATTTATATT-
1 TTTAGTTTATTTATATTC
31383599 TTTAAGTTTATTATATATTC
1 TTT-AGTTTATT-TATATTC
*
31383619 TTTAGTTTTTTTATA
1 TTTAGTTTATTTATA
31383634 ACTTTTTGAG
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
16 3 0.10
17 1 0.03
18 10 0.33
19 13 0.43
20 3 0.10
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (18 bp):
TTTAGTTTATTTATATTC
Found at i:31385934 original size:15 final size:15
Alignment explanation
Indices: 31385914--31385988 Score: 111
Period size: 15 Copynumber: 5.2 Consensus size: 15
31385904 ATACTTAAGC
31385914 AGGGTTTGCACATAT
1 AGGGTTTGCACATAT
*
31385929 AGGGTTTGCTCATAT
1 AGGGTTTGCACATAT
*
31385944 -GGGTTTGCACATAC
1 AGGGTTTGCACATAT
31385958 AGGGTTTGCACATAT
1 AGGGTTTGCACATAT
31385973 --GGTTTGCACATAT
1 AGGGTTTGCACATAT
31385986 AGG
1 AGG
31385989 TTCACACCTA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
13 13 0.25
14 12 0.23
15 28 0.53
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (15 bp):
AGGGTTTGCACATAT
Found at i:31385961 original size:29 final size:29
Alignment explanation
Indices: 31385915--31385984 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
31385905 TACTTAAGCA
* *
31385915 GGGTTTGCACATATAGGGTTTGCTCATAT
1 GGGTTTGCACATACAGGGTTTGCACATAT
31385944 GGGTTTGCACATACAGGGTTTGCACATAT
1 GGGTTTGCACATACAGGGTTTGCACATAT
31385973 -GGTTTGCACATA
1 GGGTTTGCACATA
31385985 TAGGTTCACA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 12 0.31
29 27 0.69
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (29 bp):
GGGTTTGCACATACAGGGTTTGCACATAT
Found at i:31386080 original size:22 final size:22
Alignment explanation
Indices: 31386045--31386171 Score: 80
Period size: 22 Copynumber: 5.7 Consensus size: 22
31386035 TAATCAACAA
* *
31386045 ATAGGGTTCACATATACCATAT
1 ATAGGGTTCGCATATACAATAT
* * *
31386067 ATAGGGTTTGCATAAACAACAT
1 ATAGGGTTCGCATATACAATAT
* *
31386089 ATAAGGTTTGCATTATTTA-AAT-T
1 ATAGGGTTCGCA-TA--TACAATAT
* *
31386112 GTTAGGGCTT-GCATATACCATAT
1 -ATAGGG-TTCGCATATACAATAT
* * *
31386135 GTAAGGTTCGCATAAACAATAT
1 ATAGGGTTCGCATATACAATAT
31386157 ATAGGGTTCGCATAT
1 ATAGGGTTCGCATAT
31386172 TTAAGCATAT
Statistics
Matches: 79, Mismatches: 18, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
21 4 0.05
22 57 0.72
23 6 0.08
24 9 0.11
25 3 0.04
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (22 bp):
ATAGGGTTCGCATATACAATAT
Found at i:31386447 original size:31 final size:27
Alignment explanation
Indices: 31386366--31386426 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
31386356 TCATTATAGA
31386366 GGCTCGCCTATA-AGGGTTCGCATAAAG
1 GGCTCGCCTATATA-GGTTCGCATAAAG
*
31386393 GGCTCGCCTATATAGGTTCGCATAAGG
1 GGCTCGCCTATATAGGTTCGCATAAAG
31386420 GGCTCGC
1 GGCTCGC
31386427 ACATGCATGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.21, C:0.25, G:0.31, T:0.23
Consensus pattern (27 bp):
GGCTCGCCTATATAGGTTCGCATAAAG
Found at i:31386472 original size:18 final size:18
Alignment explanation
Indices: 31386439--31386473 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31386429 ATGCATGAGA
*
31386439 GTTCGCATATTATAGGGG
1 GTTCGCATACTATAGGGG
*
31386457 GTTCGCATACTCTAGGG
1 GTTCGCATACTATAGGG
31386474 TTGTCATGCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.17, G:0.31, T:0.31
Consensus pattern (18 bp):
GTTCGCATACTATAGGGG
Found at i:31388355 original size:16 final size:16
Alignment explanation
Indices: 31388334--31388364 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31388324 TGAAATTCTA
*
31388334 ATTTTATTATGTGATG
1 ATTTTATTAAGTGATG
31388350 ATTTTATTAAGTGAT
1 ATTTTATTAAGTGAT
31388365 TTCAATAGAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (16 bp):
ATTTTATTAAGTGATG
Found at i:31389109 original size:103 final size:103
Alignment explanation
Indices: 31388912--31389109 Score: 315
Period size: 103 Copynumber: 1.9 Consensus size: 103
31388902 GAGTCGACGG
* *
31388912 ATAAGACCATGGTTGAACCATGGCAGTAAATATTCGTGAAAGACAATAGCTGGGCTATGGCATCC
1 ATAAGACCATGGTTGAACCATGGCAGTAAATATTCGTGAAAGACAATAGCTGGGCAATGGCATCA
* * * *
31388977 TGATGATAAGACCATAATTGGGTTGTGACATCATGAAC
66 TGATGACAAGACCATAACTAGGTTATGACATCATGAAC
* * *
31389015 ATAAGACCATGGTTGGACTATGGCAGTAAATATTCGTGAAAGACCATAGCTGGGCAATGGCATCA
1 ATAAGACCATGGTTGAACCATGGCAGTAAATATTCGTGAAAGACAATAGCTGGGCAATGGCATCA
31389080 TGATGACAAGACCATAACTAGGTTATGACA
66 TGATGACAAGACCATAACTAGGTTATGACA
31389110 CTACAAGTGT
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
103 86 1.00
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (103 bp):
ATAAGACCATGGTTGAACCATGGCAGTAAATATTCGTGAAAGACAATAGCTGGGCAATGGCATCA
TGATGACAAGACCATAACTAGGTTATGACATCATGAAC
Found at i:31389141 original size:103 final size:102
Alignment explanation
Indices: 31388928--31389162 Score: 264
Period size: 103 Copynumber: 2.3 Consensus size: 102
31388918 CCATGGTTGA
* * * *
31388928 ACCATGGCAGTAAATATTCGTGAAAGACAATAGCTGGGCTATGGCATCCTGATGATAAGACCATA
1 ACCATGGCAGTAAATATTCGTGAAAGACCATAGCTGGGCAATGGCATCATGATGACAAGACCATA
* * * ***
31388993 ATTGGGTTGTGACATCATGAACATAAGACCATGGTTGG
66 ACTAGGTTATGACATCA-GAACATAAGACCATGACAGG
*
31389031 ACTATGGCAGTAAATATTCGTGAAAGACCATAGCTGGGCAATGGCATCATGATGACAAGACCATA
1 ACCATGGCAGTAAATATTCGTGAAAGACCATAGCTGGGCAATGGCATCATGATGACAAGACCATA
***
31389096 ACTAGGTTATGACACTACA-AGTGTAAGACCATGACAGG
66 ACTAGGTTATGACA-T-CAGAACATAAGACCATGACAGG
* *
31389134 GCCATGGC----AATATTCGTGTAAGACCATAG
1 ACCATGGCAGTAAATATTCGTGAAAGACCATAG
31389163 TTGGACTATG
Statistics
Matches: 113, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
99 20 0.18
103 90 0.80
104 1 0.01
105 2 0.02
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.23
Consensus pattern (102 bp):
ACCATGGCAGTAAATATTCGTGAAAGACCATAGCTGGGCAATGGCATCATGATGACAAGACCATA
ACTAGGTTATGACATCAGAACATAAGACCATGACAGG
Found at i:31390293 original size:29 final size:29
Alignment explanation
Indices: 31390260--31390324 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
31390250 CTAAGTTCTC
* * *
31390260 AATTTAGTCTCGACTTACATATAAACCTT
1 AATTTAGTCCCAAATTACATATAAACCTT
* *
31390289 AATTTAGTCCCAAATTACATCTAAAGCTT
1 AATTTAGTCCCAAATTACATATAAACCTT
*
31390318 AAATTAG
1 AATTTAG
31390325 GCCTCGAGGG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.35
Consensus pattern (29 bp):
AATTTAGTCCCAAATTACATATAAACCTT
Found at i:31392041 original size:9 final size:9
Alignment explanation
Indices: 31392029--31392070 Score: 57
Period size: 9 Copynumber: 4.6 Consensus size: 9
31392019 ATTTTTGATA
31392029 AATTTGAGT
1 AATTTGAGT
*
31392038 AATTTGGGCT
1 AATTTGAG-T
*
31392048 AAATTGAGT
1 AATTTGAGT
31392057 AATTTGAGT
1 AATTTGAGT
31392066 AATTT
1 AATTT
31392071 TTGAATTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
9 21 0.75
10 7 0.25
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.43
Consensus pattern (9 bp):
AATTTGAGT
Found at i:31395409 original size:41 final size:41
Alignment explanation
Indices: 31395352--31395437 Score: 163
Period size: 41 Copynumber: 2.1 Consensus size: 41
31395342 GATCTGTAGG
31395352 TAACCCTGACAACTCTTCGGGAAACACGTCAGGAAATTCAC
1 TAACCCTGACAACTCTTCGGGAAACACGTCAGGAAATTCAC
*
31395393 TAACCCTGACAACTCTTTGGGAAACACGTCAGGAAATTCAC
1 TAACCCTGACAACTCTTCGGGAAACACGTCAGGAAATTCAC
31395434 TAAC
1 TAAC
31395438 GGTTTGAATG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (41 bp):
TAACCCTGACAACTCTTCGGGAAACACGTCAGGAAATTCAC
Found at i:31405986 original size:15 final size:17
Alignment explanation
Indices: 31405957--31405990 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
31405947 TTCTTTAGAC
31405957 TTTTTTTAGATTTCTTA
1 TTTTTTTAGATTTCTTA
31405974 TTTTTTTA-A-TTCTTA
1 TTTTTTTAGATTTCTTA
31405989 TT
1 TT
31405991 AAAAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 1 0.06
17 8 0.47
ACGTcount: A:0.18, C:0.06, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTTTTTAGATTTCTTA
Found at i:31412751 original size:37 final size:37
Alignment explanation
Indices: 31412701--31412775 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
31412691 AAATAAAATG
*
31412701 TGATAAATTAATTAATTAACAAAATATCATCAATTTA
1 TGATAAATTAATTAAATAACAAAATATCATCAATTTA
*
31412738 TGATAAATTAATTAAATAATAAAATATCATCAATTTA
1 TGATAAATTAATTAAATAACAAAATATCATCAATTTA
31412775 T
1 T
31412776 CTCATCTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.52, C:0.07, G:0.03, T:0.39
Consensus pattern (37 bp):
TGATAAATTAATTAAATAACAAAATATCATCAATTTA
Found at i:31412970 original size:23 final size:23
Alignment explanation
Indices: 31412942--31412991 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
31412932 GTTATCAAAT
31412942 TATGAAAATTTGCCATGGATGAA
1 TATGAAAATTTGCCATGGATGAA
31412965 TATGAAAATTTGCCATGGATGAA
1 TATGAAAATTTGCCATGGATGAA
31412988 TATG
1 TATG
31412992 CTGAAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (23 bp):
TATGAAAATTTGCCATGGATGAA
Found at i:31413588 original size:7 final size:7
Alignment explanation
Indices: 31413578--31413611 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
31413568 GATAATGCTC
31413578 GATAAAT
1 GATAAAT
31413585 GATAAAT
1 GATAAAT
31413592 GATAAAT
1 GATAAAT
31413599 GATAAAT
1 GATAAAT
31413606 GATAAA
1 GATAAA
31413612 AAAATGTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.15, T:0.26
Consensus pattern (7 bp):
GATAAAT
Found at i:31414358 original size:15 final size:15
Alignment explanation
Indices: 31414338--31414379 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
31414328 ATGATGATAC
31414338 ATGATATATGGAAAT
1 ATGATATATGGAAAT
31414353 ATGATATGAT-GAAAT
1 ATGATAT-ATGGAAAT
*
31414368 ATG-TACATGGAA
1 ATGATATATGGAA
31414380 TTTACTTGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 2 0.08
14 5 0.21
15 15 0.62
16 2 0.08
ACGTcount: A:0.45, C:0.02, G:0.21, T:0.31
Consensus pattern (15 bp):
ATGATATATGGAAAT
Found at i:31427033 original size:16 final size:16
Alignment explanation
Indices: 31427011--31427079 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
31427001 TTTGGTTCGC
31427011 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
*
31427027 CGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
31427043 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
31427060 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
31427076 TGTA
1 TGTA
31427080 ATAGCTAATC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:31427057 original size:33 final size:32
Alignment explanation
Indices: 31427011--31427079 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
31427001 TTTGGTTCGC
31427011 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGCGTATTGGATTAGAGG
*
31427043 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGCGTATTGGATTAGAGG
31427076 TGTA
1 TGTA
31427080 ATAGCTAATC
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 6 0.17
33 29 0.83
ACGTcount: A:0.25, C:0.01, G:0.38, T:0.36
Consensus pattern (32 bp):
TGTATTGGATTAGAGGCGTATTGGATTAGAGG
Found at i:31427144 original size:44 final size:45
Alignment explanation
Indices: 31427060--31427150 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
31427050 GGATTAGAGG
* * *
31427060 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
31427105 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
31427149 TG
1 TG
31427151 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:31427336 original size:18 final size:17
Alignment explanation
Indices: 31427315--31427349 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
31427305 TTATTATTAA
*
31427315 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
31427333 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
31427350 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:31427456 original size:18 final size:17
Alignment explanation
Indices: 31427435--31427469 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
31427425 TTATTATTAA
*
31427435 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
31427453 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
31427470 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:31427511 original size:120 final size:120
Alignment explanation
Indices: 31427298--31427519 Score: 435
Period size: 120 Copynumber: 1.9 Consensus size: 120
31427288 ATCATATTTA
31427298 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
31427363 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTGACTCAAATCATAATATATGATACTGTAAAATATAAATT
31427418 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
31427483 TATTCTTATATTAATTGACTCAAATCATAATATATGA
66 TATTCTTATATTAATTGACTCAAATCATAATATATGA
31427520 ATTGGACCAA
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 101 1.00
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATTAATTGACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:31430852 original size:11 final size:11
Alignment explanation
Indices: 31430836--31430863 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
31430826 AATCGAGAGG
31430836 CGAAGGTAGAA
1 CGAAGGTAGAA
31430847 CGAAGGTAGAA
1 CGAAGGTAGAA
31430858 CGAAGG
1 CGAAGG
31430864 AAGAGGCGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.11, G:0.39, T:0.07
Consensus pattern (11 bp):
CGAAGGTAGAA
Found at i:31431401 original size:22 final size:23
Alignment explanation
Indices: 31431376--31431421 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
31431366 CAACCAAACC
31431376 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
31431398 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
31431421 A
1 A
31431422 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:31431427 original size:23 final size:23
Alignment explanation
Indices: 31431383--31431427 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
31431373 ACCAATTCAA
*
31431383 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
31431406 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
31431428 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:31444029 original size:25 final size:25
Alignment explanation
Indices: 31444001--31444058 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 25
31443991 CGGGTGCATT
31444001 ATATC-GATTTGGCTTCGGGCCATG
1 ATATCTGATTTGGCTTCGGGCCATG
31444025 AATATCGGCTGATTTGGCTTCGGGCCATG
1 -ATAT---CTGATTTGGCTTCGGGCCATG
31444054 ATATC
1 ATATC
31444059 AGTCTTTTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
25 5 0.17
28 5 0.17
29 19 0.66
ACGTcount: A:0.19, C:0.21, G:0.28, T:0.33
Consensus pattern (25 bp):
ATATCTGATTTGGCTTCGGGCCATG
Found at i:31446747 original size:20 final size:20
Alignment explanation
Indices: 31446724--31446762 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
31446714 AATGGAATAC
31446724 AATGGGATAAT-ATGGGATGT
1 AATGGGAT-ATGATGGGATGT
*
31446744 AATGTGATATGATGGGATG
1 AATGGGATATGATGGGATG
31446763 ATTACAAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.31
Consensus pattern (20 bp):
AATGGGATATGATGGGATGT
Found at i:31451534 original size:15 final size:15
Alignment explanation
Indices: 31451514--31451551 Score: 76
Period size: 15 Copynumber: 2.5 Consensus size: 15
31451504 TGCTGTTGTG
31451514 CAGGTGGATACTGCC
1 CAGGTGGATACTGCC
31451529 CAGGTGGATACTGCC
1 CAGGTGGATACTGCC
31451544 CAGGTGGA
1 CAGGTGGA
31451552 AGTAGTGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.21, C:0.24, G:0.37, T:0.18
Consensus pattern (15 bp):
CAGGTGGATACTGCC
Found at i:31451915 original size:11 final size:11
Alignment explanation
Indices: 31451888--31451922 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
31451878 AGACTCTGAA
31451888 AATCAAAACA-
1 AATCAAAACAC
*
31451898 AAACAAAACAC
1 AATCAAAACAC
31451909 AATCAAAACAC
1 AATCAAAACAC
31451920 AAT
1 AAT
31451923 TGATTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.69, C:0.23, G:0.00, T:0.09
Consensus pattern (11 bp):
AATCAAAACAC
Found at i:31454082 original size:39 final size:39
Alignment explanation
Indices: 31454028--31454105 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
31454018 GTAAATACAA
* *
31454028 ATTTTTCTCTAGGTTGCCCTGCGTCTAACACCTGCCATT
1 ATTTTTCTCTAGGTTGCCCCGCGTCTAACACCTACCATT
31454067 ATTTTTCTCTAGGTTGCCCCGCGTCTAACACCTACCATT
1 ATTTTTCTCTAGGTTGCCCCGCGTCTAACACCTACCATT
31454106 TCTTCTCTTC
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.17, C:0.32, G:0.14, T:0.37
Consensus pattern (39 bp):
ATTTTTCTCTAGGTTGCCCCGCGTCTAACACCTACCATT
Found at i:31458111 original size:24 final size:24
Alignment explanation
Indices: 31458079--31458178 Score: 130
Period size: 24 Copynumber: 4.0 Consensus size: 24
31458069 TGGCATTGTA
*
31458079 CTAAGTGAAATAAGAT-CATAGCAT
1 CTAAGTGAAATAAG-TCCATGGCAT
31458103 CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
31458130 GCTAAGTGAAATAAGTCCATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
31458155 CTAAGCGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
31458179 GGTGCAAAGT
Statistics
Matches: 69, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
23 1 0.01
24 42 0.61
25 2 0.03
27 2 0.03
28 22 0.32
ACGTcount: A:0.39, C:0.16, G:0.21, T:0.24
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:31458138 original size:52 final size:52
Alignment explanation
Indices: 31458068--31458190 Score: 169
Period size: 52 Copynumber: 2.4 Consensus size: 52
31458058 TATCTAGGAT
* * *
31458068 ATGGCATTGTACTAAGTGAAATAAGAT-CATAGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAG-TCCATAGCATCTAAGCGAAATAAGTCC
*
31458120 ATGGCAATGTGCTAAGTGAAATAAGTCCATGGCATCTAAGCGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGTCCATAGCATCTAAGCGAAATAAGTCC
*
31458172 ATGGC-ATGGTGCAAAGTGA
1 ATGGCAAT-GTGCTAAGTGA
31458191 GAAATTTCCC
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
51 3 0.05
52 61 0.95
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (52 bp):
ATGGCAATGTGCTAAGTGAAATAAGTCCATAGCATCTAAGCGAAATAAGTCC
Found at i:31458143 original size:28 final size:27
Alignment explanation
Indices: 31458068--31458190 Score: 125
Period size: 24 Copynumber: 4.7 Consensus size: 27
31458058 TATCTAGGAT
*
31458068 ATGGCATTGTACTAAGTGAAATAAGAT-C
1 ATGGCA-TGTGCTAAGTGAAATAAG-TCC
*
31458096 ATAGCA--T-CTAAGTGAAATAAGTCC
1 ATGGCATGTGCTAAGTGAAATAAGTCC
31458120 ATGGCAATGTGCTAAGTGAAATAAGTCC
1 ATGGC-ATGTGCTAAGTGAAATAAGTCC
*
31458148 ATGGCA--T-CTAAGCGAAATAAGTCC
1 ATGGCATGTGCTAAGTGAAATAAGTCC
*
31458172 ATGGCATGGTGCAAAGTGA
1 ATGGCAT-GTGCTAAGTGA
31458191 GAAATTTCCC
Statistics
Matches: 81, Mismatches: 5, Indels: 18
0.78 0.05 0.17
Matches are distributed among these distances:
23 1 0.01
24 41 0.51
25 3 0.04
27 3 0.04
28 33 0.41
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (27 bp):
ATGGCATGTGCTAAGTGAAATAAGTCC
Found at i:31466561 original size:12 final size:13
Alignment explanation
Indices: 31466525--31466562 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
31466515 AAATATTTAA
31466525 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
31466538 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
31466552 CTTG-TCTTAAT
1 CTTGTTCTTAAT
31466563 ATTCCAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:31477090 original size:24 final size:24
Alignment explanation
Indices: 31477058--31477209 Score: 187
Period size: 24 Copynumber: 6.0 Consensus size: 24
31477048 TGGCATTGTG
*
31477058 CTAAGTGAAATAAGACCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
31477082 CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
*
31477109 GCTAAGTGAAATAAGACCATGGCAT
1 -CTAAGTGAAATAAGTCCATGGCAT
31477134 CTAAGTGAAATAAGTCCATGGCAATGT
1 CTAAGTGAAATAAGTCCATGGC-A--T
* *
31477161 GCTAAGTGAAATAAGTCCACGACAT
1 -CTAAGTGAAATAAGTCCATGGCAT
*
31477186 CTAAGCGAAATAAGTCCATGGCAT
1 CTAAGTGAAATAAGTCCATGGCAT
31477210 GGTGCTAAGT
Statistics
Matches: 112, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
24 63 0.56
25 4 0.04
27 4 0.04
28 41 0.37
ACGTcount: A:0.39, C:0.17, G:0.22, T:0.22
Consensus pattern (24 bp):
CTAAGTGAAATAAGTCCATGGCAT
Found at i:31477117 original size:52 final size:52
Alignment explanation
Indices: 31477047--31477221 Score: 289
Period size: 52 Copynumber: 3.4 Consensus size: 52
31477037 TATCTAGTAT
*
31477047 ATGGCATTGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
31477099 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
* * * *
31477151 ATGGCAATGTGCTAAGTGAAATAAGTCCACGACATCTAAGCGAAATAAGTCC
1 ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
31477203 ATGGC-ATGGTGCTAAGTGA
1 ATGGCAAT-GTGCTAAGTGA
31477222 GAAATTTCCC
Statistics
Matches: 117, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
51 2 0.02
52 115 0.98
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (52 bp):
ATGGCAATGTGCTAAGTGAAATAAGACCATGGCATCTAAGTGAAATAAGTCC
Found at i:31477323 original size:51 final size:51
Alignment explanation
Indices: 31477245--31477494 Score: 394
Period size: 51 Copynumber: 4.9 Consensus size: 51
31477235 TGAACCTTAG
* *
31477245 GAATAAAATAGCTTTAGACACAGGTGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* * *
31477296 GAATATAATAGCTTTGGACACAAGTGTGGTACTAAGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* * *
31477347 GAATATAATAGCTTTGGACACAAGTGTGGTACTAAGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
31477398 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
* *
31477449 GAATAAAATAGCTTTGG-CTACAAGGGTGGTATTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
31477495 CGTGTATCCG
Statistics
Matches: 188, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
50 1 0.01
51 187 0.99
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTAT
Found at i:31481107 original size:42 final size:42
Alignment explanation
Indices: 31481056--31481137 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 42
31481046 TGATATCTCG
* * * *
31481056 TATCGATGCCATGTCCTAGACATGGTCTTACACGAAATCAAA
1 TATCAATGCCATATCCCAAACATGGTCTTACACGAAATCAAA
* *
31481098 TATCAATGCCATATCCCAAATATGGTCTTACATGAAATCA
1 TATCAATGCCATATCCCAAACATGGTCTTACACGAAATCA
31481138 CACATATTGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.28
Consensus pattern (42 bp):
TATCAATGCCATATCCCAAACATGGTCTTACACGAAATCAAA
Found at i:31489294 original size:23 final size:23
Alignment explanation
Indices: 31489268--31489312 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
31489258 TGGGTAAGTG
* * *
31489268 ATGACGTTATTTTATAAATATGC
1 ATGAAGTTATCTTAAAAATATGC
*
31489291 ATGAATTTATCTTAAAAATATG
1 ATGAAGTTATCTTAAAAATATG
31489313 TTGAATTGGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (23 bp):
ATGAAGTTATCTTAAAAATATGC
Found at i:31489335 original size:14 final size:14
Alignment explanation
Indices: 31489312--31489341 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
31489302 TTAAAAATAT
31489312 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
31489326 GTTGATTTGGATTG
1 GTTGAATTGGATTG
31489340 GT
1 GT
31489342 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:31499219 original size:21 final size:21
Alignment explanation
Indices: 31499190--31499229 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
31499180 AGACAAGTGT
*
31499190 TTTTATTAAGTTTTAATTATG
1 TTTTATTAAGTTTCAATTATG
*
31499211 TTTTCTTAAGTTTCAATTA
1 TTTTATTAAGTTTCAATTA
31499230 ATTTAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (21 bp):
TTTTATTAAGTTTCAATTATG
Found at i:31505351 original size:28 final size:29
Alignment explanation
Indices: 31505275--31505343 Score: 104
Period size: 29 Copynumber: 2.4 Consensus size: 29
31505265 AAGGCAGTCA
*
31505275 TTGTGGCTATCTCTATTAAATGAATGTCT
1 TTGTGGCTATCTCTATTAAATGAATGCCT
* *
31505304 TTATGGTTATCTCTATTAAATG-ATGCCT
1 TTGTGGCTATCTCTATTAAATGAATGCCT
31505332 TTGTGGCTATCT
1 TTGTGGCTATCT
31505344 TTGTTAAAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 15 0.43
29 20 0.57
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.46
Consensus pattern (29 bp):
TTGTGGCTATCTCTATTAAATGAATGCCT
Found at i:31505727 original size:21 final size:21
Alignment explanation
Indices: 31505701--31505742 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
31505691 ATGTCTCAAG
*
31505701 TAAAAGAAGCATCAGGGGGGA
1 TAAAAGAACCATCAGGGGGGA
31505722 TAAAAGAACCATCAGGGGGGA
1 TAAAAGAACCATCAGGGGGGA
31505743 CGACGACAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.36, T:0.10
Consensus pattern (21 bp):
TAAAAGAACCATCAGGGGGGA
Found at i:31509495 original size:24 final size:24
Alignment explanation
Indices: 31509467--31509513 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
31509457 ATATAGATAC
31509467 AATTCAATCA-ATA-TAAATTCAATA
1 AATTC-ATCACATACTAAA-TCAATA
31509491 AATTCATCACATACTAAATCAAT
1 AATTCATCACATACTAAATCAAT
31509514 CCATTTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCATCACATACTAAATCAATA
Found at i:31519759 original size:33 final size:33
Alignment explanation
Indices: 31519722--31519798 Score: 145
Period size: 33 Copynumber: 2.3 Consensus size: 33
31519712 AGTAGGGATT
31519722 TAAATAGCGGTCTGATATTGGTATAGTAGTCGC
1 TAAATAGCGGTCTGATATTGGTATAGTAGTCGC
31519755 TAAATAGCGGTCTGATATTGGTATAGTAGTCGC
1 TAAATAGCGGTCTGATATTGGTATAGTAGTCGC
*
31519788 TATATAGCGGT
1 TAAATAGCGGT
31519799 AGCGGCATCG
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (33 bp):
TAAATAGCGGTCTGATATTGGTATAGTAGTCGC
Found at i:31527289 original size:24 final size:24
Alignment explanation
Indices: 31527254--31527307 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
31527244 TATTTTAATA
*
31527254 TATAAA-ATATAAATTTTAAATATT
1 TATAAACA-ATAAATATTAAATATT
* *
31527278 TTTAAACAATAAATATTAATTATT
1 TATAAACAATAAATATTAAATATT
31527302 TATAAA
1 TATAAA
31527308 ATTTAATTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (24 bp):
TATAAACAATAAATATTAAATATT
Found at i:31535207 original size:9 final size:9
Alignment explanation
Indices: 31535195--31535245 Score: 66
Period size: 9 Copynumber: 5.7 Consensus size: 9
31535185 AATAATTTGT
31535195 TTAATTCGG
1 TTAATTCGG
**
31535204 TTAATTAAG
1 TTAATTCGG
31535213 TTAATTCGG
1 TTAATTCGG
*
31535222 GTAATTCGG
1 TTAATTCGG
*
31535231 GTAATTCGG
1 TTAATTCGG
31535240 TTAATT
1 TTAATT
31535246 TTATACTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.43
Consensus pattern (9 bp):
TTAATTCGG
Found at i:31540170 original size:34 final size:33
Alignment explanation
Indices: 31540132--31540198 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 33
31540122 ACAGTCAAAT
31540132 GCAGTTTGGGCC-TAAGCCCATTTCAGTCTCAGTA
1 GCAGTTTGGGCCTTAAGCCC-TTTCAGT-TCAGTA
31540166 GCAGTTTGGGCCTTAAGCCCTTTCAGTTCAGTA
1 GCAGTTTGGGCCTTAAGCCCTTTCAGTTCAGTA
31540199 TCAGATATGC
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
33 6 0.19
34 19 0.59
35 7 0.22
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.31
Consensus pattern (33 bp):
GCAGTTTGGGCCTTAAGCCCTTTCAGTTCAGTA
Found at i:31546547 original size:23 final size:24
Alignment explanation
Indices: 31546495--31546548 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
31546485 TAGAAACTAG
*
31546495 GAAATAAGAAAAATTTTAGTTATAA
1 GAAA-AAGAAAAATTTTAGTTAGAA
*
31546520 TAAAAAGAAAAGA-TTTA-TTAGAA
1 GAAAAAGAAAA-ATTTTAGTTAGAA
31546543 GAAAAA
1 GAAAAA
31546549 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 10 0.40
24 11 0.44
25 4 0.16
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (24 bp):
GAAAAAGAAAAATTTTAGTTAGAA
Found at i:31548108 original size:21 final size:21
Alignment explanation
Indices: 31548066--31548112 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
31548056 TTTTATAAAT
*
31548066 AAATATTTGAAAAAGTCCTTA
1 AAATATTTGAAAAAGTCATTA
*
31548087 AAAT-TTTGAAAAAGTTGATTA
1 AAATATTTGAAAAAG-TCATTA
31548108 AAATA
1 AAATA
31548113 ATTCGAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.51, C:0.04, G:0.11, T:0.34
Consensus pattern (21 bp):
AAATATTTGAAAAAGTCATTA
Found at i:31552930 original size:41 final size:41
Alignment explanation
Indices: 31552875--31553113 Score: 299
Period size: 41 Copynumber: 5.8 Consensus size: 41
31552865 GAATGTAATA
* *
31552875 CAGACGTTACGTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG-A-TACATTT
31552916 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
31552957 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* *
31552998 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
* * *
31553039 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAAT
1 CAGACTTTAAGTCTAGCAGGCTTAA-TGCCGGTGATACAT--TT
* * **
31553080 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
31553114 ATCTGTTTAA
Statistics
Matches: 181, Mismatches: 10, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 3 0.02
40 8 0.04
41 168 0.93
42 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.28
Consensus pattern (41 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
Done.