Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 103 of 290
Found at i:31779255 original size:26 final size:25
Alignment explanation
Indices: 31779210--31779259 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 25
31779200 ACAAAATAGA
31779210 AAATTGAGAAAAGAAGAATTTGAGAG
1 AAATTGAGAAAAGAAGAA-TTGAGAG
31779236 AAATTGAATGAAAA-AA-AATTGAGA
1 AAATTG-A-GAAAAGAAGAATTGAGA
31779260 ATAAAAGATT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
25 6 0.27
26 8 0.36
27 3 0.14
28 5 0.23
ACGTcount: A:0.58, C:0.00, G:0.22, T:0.20
Consensus pattern (25 bp):
AAATTGAGAAAAGAAGAATTGAGAG
Found at i:31781453 original size:43 final size:43
Alignment explanation
Indices: 31781392--31781479 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
31781382 TTCTGGACAT
31781392 ATTGGTGGACATGGTCGAGGACATACTAGTAATTGTTATCATG
1 ATTGGTGGACATGGTCGAGGACATACTAGTAATTGTTATCATG
31781435 ATTGGTGGACATGGTCGAGGACATACTAGTAATTGTTATCATG
1 ATTGGTGGACATGGTCGAGGACATACTAGTAATTGTTATCATG
31781478 AT
1 AT
31781480 GTTCATAGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.28, C:0.11, G:0.27, T:0.33
Consensus pattern (43 bp):
ATTGGTGGACATGGTCGAGGACATACTAGTAATTGTTATCATG
Found at i:31781906 original size:65 final size:64
Alignment explanation
Indices: 31781802--31781922 Score: 181
Period size: 65 Copynumber: 1.9 Consensus size: 64
31781792 ATCATTAGAA
* * *
31781802 AAGTTGGTGTTATTTTAGCATTTTGTGTTATTTTTAAGTATGTTTCGTTTTCTTGCATAAATAAT
1 AAGTTGGTGTTATTTTAGCATTTTATGATATTTTTAAGTATGTTT-ATTTTCTTGCATAAATAAT
*
31781867 AAGTTGGTGTTATTTTGGCATTTTTATGATA-TTTTAAGTATGTTTATTTTCTTGCA
1 AAGTTGGTGTTATTTTAGCA-TTTTATGATATTTTTAAGTATGTTTATTTTCTTGCA
31781923 AATTATACAT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
64 10 0.20
65 33 0.65
66 8 0.16
ACGTcount: A:0.22, C:0.06, G:0.17, T:0.55
Consensus pattern (64 bp):
AAGTTGGTGTTATTTTAGCATTTTATGATATTTTTAAGTATGTTTATTTTCTTGCATAAATAAT
Found at i:31783688 original size:21 final size:21
Alignment explanation
Indices: 31783662--31783703 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
31783652 GCAAATACTC
31783662 AATGTGATTATATTAAGGGGA
1 AATGTGATTATATTAAGGGGA
31783683 AATGTGATTATATTAAGGGGA
1 AATGTGATTATATTAAGGGGA
31783704 CAAGTTCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (21 bp):
AATGTGATTATATTAAGGGGA
Found at i:31784323 original size:18 final size:18
Alignment explanation
Indices: 31784300--31784349 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
31784290 AATTTATATG
31784300 AAAATCCTAGAAGGGTTT
1 AAAATCCTAGAAGGGTTT
31784318 AAAATCCTAGAAGGGTTT
1 AAAATCCTAGAAGGGTTT
31784336 AAAATCCTAGAAGG
1 AAAATCCTAGAAGG
31784350 ATATAGAGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (18 bp):
AAAATCCTAGAAGGGTTT
Found at i:31788875 original size:123 final size:123
Alignment explanation
Indices: 31788384--31788867 Score: 923
Period size: 123 Copynumber: 3.9 Consensus size: 123
31788374 ATGAGGTGAA
31788384 AAGTGCAATTATGGAGGATTCTGTTGAATGTAAGAAATGCACACATAGTGATGATGATGTTGTGA
1 AAGTGCAATTATGGAGGATTCTGTTGAATGTAAGAAATGCACACATAGTGATGATGATGTTGTGA
31788449 AGTTGGATTCAAGTGACATTAAGGAAAAATTGTCTTCAAATAAGAGGAAGAGGGATTC
66 AGTTGGATTCAAGTGACATTAAGGAAAAATTGTCTTCAAATAAGAGGAAGAGGGATTC
31788507 AAGTGCAATTATGGAGGATTCTGTTGAATGTAAGAAATGCACACATAGTGATGATGATGTTGTGA
1 AAGTGCAATTATGGAGGATTCTGTTGAATGTAAGAAATGCACACATAGTGATGATGATGTTGTGA
31788572 AGTTGGATTCAAGTGACATTAAGGAAAAATTGTCTTCAAATAAGAGGAAGAGGGATTC
66 AGTTGGATTCAAGTGACATTAAGGAAAAATTGTCTTCAAATAAGAGGAAGAGGGATTC
*
31788630 AAGTGCAATTATGGAGGATTCTGTTGAATGTAAGAAATGCACACATAGTGATGATGATGTTATGA
1 AAGTGCAATTATGGAGGATTCTGTTGAATGTAAGAAATGCACACATAGTGATGATGATGTTGTGA
31788695 AGTTGGATTCAAGTGACATTAAGGAAAAATTGTCTTCAAATAAGAGGAAGAGGGATTC
66 AGTTGGATTCAAGTGACATTAAGGAAAAATTGTCTTCAAATAAGAGGAAGAGGGATTC
* *
31788753 AAGTGCAATTATGGACGATTCTGTTGAATGTAAGAAATACACACATAGTGATGATGATGTTGTGA
1 AAGTGCAATTATGGAGGATTCTGTTGAATGTAAGAAATGCACACATAGTGATGATGATGTTGTGA
* *
31788818 AGTTGGATTCAAGTGACATTAAGGAAAACTTTTCTTCAAATAAGAGGAAG
66 AGTTGGATTCAAGTGACATTAAGGAAAAATTGTCTTCAAATAAGAGGAAG
31788868 CTGGATTCTA
Statistics
Matches: 355, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
123 355 1.00
ACGTcount: A:0.37, C:0.08, G:0.26, T:0.29
Consensus pattern (123 bp):
AAGTGCAATTATGGAGGATTCTGTTGAATGTAAGAAATGCACACATAGTGATGATGATGTTGTGA
AGTTGGATTCAAGTGACATTAAGGAAAAATTGTCTTCAAATAAGAGGAAGAGGGATTC
Found at i:31797313 original size:18 final size:18
Alignment explanation
Indices: 31797290--31797325 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
31797280 GAGTATTTGT
31797290 TTCTTAGTCAAACAAGAA
1 TTCTTAGTCAAACAAGAA
* *
31797308 TTCTTAGTTAAATAAGAA
1 TTCTTAGTCAAACAAGAA
31797326 AGTTTATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.33
Consensus pattern (18 bp):
TTCTTAGTCAAACAAGAA
Found at i:31798037 original size:28 final size:27
Alignment explanation
Indices: 31798005--31798058 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
31797995 TTCGTCAGTT
* *
31798005 TATTTAGTGAGCTAGGGGTTCTCTAGTC
1 TATTTAGCGAGCTA-GGGTTCGCTAGTC
*
31798033 TATTTGGCGAGCTAGGGTTCGCTAGT
1 TATTTAGCGAGCTAGGGTTCGCTAGT
31798059 TTGTTTGGCG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.17, C:0.15, G:0.31, T:0.37
Consensus pattern (27 bp):
TATTTAGCGAGCTAGGGTTCGCTAGTC
Found at i:31798058 original size:27 final size:28
Alignment explanation
Indices: 31798013--31798082 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
31798003 TTTATTTAGT
*
31798013 GAGCTAGGGGTTCTCTAGTCTATTTGGC
1 GAGCTAGGGGTTCGCTAGTCTATTTGGC
* *
31798041 GAGCTA-GGGTTCGCTAGTTTGTTTGGC
1 GAGCTAGGGGTTCGCTAGTCTATTTGGC
*
31798068 GAACT-GGTGGTTCGC
1 GAGCTAGG-GGTTCGC
31798083 CATGTAAGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
27 23 0.64
28 13 0.36
ACGTcount: A:0.13, C:0.17, G:0.36, T:0.34
Consensus pattern (28 bp):
GAGCTAGGGGTTCGCTAGTCTATTTGGC
Found at i:31800883 original size:18 final size:18
Alignment explanation
Indices: 31800847--31800884 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
31800837 TCAAGTATGT
*
31800847 ATGATACCTATGTGGTAA
1 ATGATACCTATGTGATAA
31800865 ATGATA-CTATGTGAATAA
1 ATGATACCTATGTG-ATAA
31800883 AT
1 AT
31800885 CTTCATGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.34
Consensus pattern (18 bp):
ATGATACCTATGTGATAA
Found at i:31825228 original size:50 final size:49
Alignment explanation
Indices: 31825111--31825335 Score: 187
Period size: 49 Copynumber: 4.6 Consensus size: 49
31825101 CAAGATGTGC
* * * *
31825111 CAGTATAAGACCATGTCTGGGACATGGAATCGGTACCT--ATAGTG-GTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG--CCTAGATTGTGAGAGT
* *
31825159 CAATGTAAGACCATGTCTGGGAAATGGCATCGGCAC-AGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTAGAT-TGTGAGAGT
* * * *
31825208 CTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTTGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTGTGAGAGT
*** * *
31825258 CAGTGTAAGACCATGTCTGGGACATGGCATC-TATTTGA-TG-GATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTGTGA-GAGT
* *
31825305 CAGTGTAAAACCATGTTTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
31825336 AGCATTATAC
Statistics
Matches: 146, Mismatches: 22, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
46 3 0.02
47 33 0.23
48 34 0.23
49 40 0.27
50 36 0.25
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (49 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGATTGTGAGAGT
Found at i:31825280 original size:49 final size:50
Alignment explanation
Indices: 31825111--31825288 Score: 195
Period size: 49 Copynumber: 3.6 Consensus size: 50
31825101 CAAGATGTGC
* * * ** *
31825111 CAGTATAAGACCATGTCTGGGACATGGAATCGGTACCTATA-GTG-GTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAGT
* *
31825159 CAATGTAAGACCATGTCTGGGAAATGGCATCGGCACAGATATGTGAGAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAGT
* * * *
31825208 CTAGTGTAAGACCATGTCTGGGACATGGCGTCGGC-CTCGAT-TTTGATAGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-AGATATGTGAGAGT
31825258 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
31825289 TATTTGATGG
Statistics
Matches: 110, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
48 34 0.31
49 40 0.36
50 36 0.33
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (50 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATGTGAGAGT
Found at i:31839208 original size:46 final size:47
Alignment explanation
Indices: 31839013--31839282 Score: 205
Period size: 46 Copynumber: 5.7 Consensus size: 47
31839003 TTAAGTTGCT
* * *
31839013 GATGCCATGTCCTAGACATAGTCTTACACTAGCTATCCTCATCGAGGCC
1 GATGCCATGTCCTAGACATGGTCTTACACTGGCTA-CATC-TCGAGGCC
* * * * * *
31839062 GATGCCATGT-CTCAGACATGGTCTTACACTAGTTCTTGCATATCCATGTC
1 GATGCCATGTCCT-AGACATGGTCTTACACT-G-GC-TACATCTCGAGGCC
* ** * **
31839112 GATACCATGTCCCGGACATGGTCTTACACTGAC-ATGTCTCGTA-GCC
1 GATGCCATGTCCTAGACATGGTCTTACACTGGCTACATCTCG-AGGCC
31839158 GATG-CATGTCCTAGACAT-GTCTTACACTGGCTTACATCTCGAGGCC
1 GATGCCATGTCCTAGACATGGTCTTACACTGGC-TACATCTCGAGGCC
** * * * *
31839204 GATG-CATGTCCCGGACAT-GTCTTACACTGGC-ACTCGTCTCAATGTC
1 GATGCCATGTCCTAGACATGGTCTTACACTGGCTA--CATCTCGAGGCC
31839250 GATGCCATGTCCTAGACATGGTCTTACACTGGC
1 GATGCCATGTCCTAGACATGGTCTTACACTGGC
31839283 ACACAAATTA
Statistics
Matches: 175, Mismatches: 33, Indels: 27
0.74 0.14 0.11
Matches are distributed among these distances:
44 13 0.07
45 13 0.07
46 58 0.33
47 13 0.07
48 16 0.09
49 27 0.15
50 30 0.17
51 4 0.02
52 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (47 bp):
GATGCCATGTCCTAGACATGGTCTTACACTGGCTACATCTCGAGGCC
Found at i:31839272 original size:138 final size:145
Alignment explanation
Indices: 31839013--31839280 Score: 354
Period size: 138 Copynumber: 1.9 Consensus size: 145
31839003 TTAAGTTGCT
* *
31839013 GATGCCATGTCCTAGACATAGTCTTACACTAGCTATCCTCATCGAGGCCGATGCCATGTCTCAGA
1 GATGCCATGTCCTAGACATAGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGA
** * *
31839078 CATGGTCTTACACTAGTTCTTGCATATCCATGTCGATACCATGTCCCGGACATGGTCTTACACTG
66 CATGGTCTTACACTAGCACTTGCATATCAATGTCGATACCATGTCCCAGACATGGTCTTACACTG
31839143 ACATGTCTCGTAGCC
131 ACATGTCTCGTAGCC
* *
31839158 GATG-CATGTCCTAGACAT-GTCTTACACTGGCT-TACATC-TCGAGGCCGATG-CATGTCCCGG
1 GATGCCATGTCCTAGACATAGTCTTACACTAGCTAT-CATCATCGAGGCCGATGCCATGTCCCAG
* * * * *
31839218 ACAT-GTCTTACACTGGCAC-T-CGTCTCAATGTCGATGCCATGTCCTAGACATGGTCTTACACT
65 ACATGGTCTTACACTAGCACTTGCATATCAATGTCGATACCATGTCCCAGACATGGTCTTACACT
31839280 G
130 G
31839281 GCACACAAAT
Statistics
Matches: 109, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
138 37 0.34
139 1 0.01
140 12 0.11
141 12 0.11
142 13 0.12
143 16 0.15
144 14 0.13
145 4 0.04
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (145 bp):
GATGCCATGTCCTAGACATAGTCTTACACTAGCTATCATCATCGAGGCCGATGCCATGTCCCAGA
CATGGTCTTACACTAGCACTTGCATATCAATGTCGATACCATGTCCCAGACATGGTCTTACACTG
ACATGTCTCGTAGCC
Found at i:31855545 original size:12 final size:13
Alignment explanation
Indices: 31855528--31855565 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
31855518 ATCCTAGAAT
31855528 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
31855540 ATTAAGAACACATA
1 ATTAAGAACA-AGA
31855554 ATTAAGAACAAG
1 ATTAAGAACAAG
31855566 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:31856406 original size:44 final size:46
Alignment explanation
Indices: 31856339--31856502 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 46
31856329 TATTCATGTT
31856339 GATGCCATGTCCCAGA-ATGGTCTTACACTGACATGTCTCGTA-GCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACATGTCTCG-AGGCC
* * *
31856384 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACGTCTAGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC--ATGTCTCGAGGCC
* * * * * * *
31856430 GAT-ACAAGTCCCAGACAT-GTCTGACACTGGTACTTGTATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACATGTCTCGAGGCC
31856476 GATGCCATGTCCCAGACATGGTCTTAC
1 GATGCCATGTCCCAGACATGGTCTTAC
31856503 GCTGGCACAC
Statistics
Matches: 95, Mismatches: 15, Indels: 15
0.76 0.12 0.12
Matches are distributed among these distances:
44 23 0.24
45 7 0.07
46 44 0.46
47 14 0.15
48 7 0.07
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACATGTCTCGAGGCC
Found at i:31857242 original size:12 final size:12
Alignment explanation
Indices: 31857225--31857249 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
31857215 CAAAAATGTA
31857225 AAAATCATCAAG
1 AAAATCATCAAG
31857237 AAAATCATCAAG
1 AAAATCATCAAG
31857249 A
1 A
31857250 TCACTTACTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:31862558 original size:20 final size:19
Alignment explanation
Indices: 31862529--31862571 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
31862519 TGTGCCCCTT
31862529 GTTTGAGAAAAACTTTC-TAA
1 GTTTGAG-AAAA-TTTCTTAA
*
31862549 GTTTGTGAAAATTTCTTAA
1 GTTTGAGAAAATTTCTTAA
31862568 GTTT
1 GTTT
31862572 TCGATTTAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 4 0.19
19 11 0.52
20 6 0.29
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (19 bp):
GTTTGAGAAAATTTCTTAA
Found at i:31863319 original size:167 final size:167
Alignment explanation
Indices: 31863043--31863353 Score: 568
Period size: 167 Copynumber: 1.9 Consensus size: 167
31863033 AATAAAACAC
*
31863043 AAAGTAGGGGCGTTTTGGTCTACACAATTGAACGTGAAGCTCAAGAACGTTAGCTAACCTATAGT
1 AAAGTAGGGGCGTTTTGGTCTACACAATTGAACGTGAAGCTCAAGAACATTAGCTAACCTATAGT
*
31863108 TAAGGATGACAGCTACCTAAAAGCTATAAATAGGCTCCTTTGGCACAGATTATGGAAACATTTCA
66 TAAGGATGACAGCTACCTAAAAGCTATAAATAGGCTCCTTTGGCACACATTATGGAAACATTTCA
31863173 TTAGCTTAGATTCTATAAATAGCTGTAAATAAGCTAT
131 TTAGCTTAGATTCTATAAATAGCTGTAAATAAGCTAT
* ***
31863210 AAAGTAGGGGCGTTTTGGTCTACACAATTGAACTTGAAGCTTGGGAACATTAGCTAACCTATAGT
1 AAAGTAGGGGCGTTTTGGTCTACACAATTGAACGTGAAGCTCAAGAACATTAGCTAACCTATAGT
31863275 TAAGGATGACAGCTACCTAAAAGCTATAAATAGGCTCCTTTGGCACACATTATGGAAACATTTCA
66 TAAGGATGACAGCTACCTAAAAGCTATAAATAGGCTCCTTTGGCACACATTATGGAAACATTTCA
31863340 TTAGCTTAGATTCT
131 TTAGCTTAGATTCT
31863354 CTCATTAGGT
Statistics
Matches: 138, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
167 138 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (167 bp):
AAAGTAGGGGCGTTTTGGTCTACACAATTGAACGTGAAGCTCAAGAACATTAGCTAACCTATAGT
TAAGGATGACAGCTACCTAAAAGCTATAAATAGGCTCCTTTGGCACACATTATGGAAACATTTCA
TTAGCTTAGATTCTATAAATAGCTGTAAATAAGCTAT
Found at i:31869779 original size:13 final size:13
Alignment explanation
Indices: 31869761--31869790 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
31869751 GCCTGGACTT
*
31869761 TGTCACACGGGCG
1 TGTCACACGGCCG
31869774 TGTCACACGGCCG
1 TGTCACACGGCCG
31869787 TGTC
1 TGTC
31869791 CTTTTGGCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.20
Consensus pattern (13 bp):
TGTCACACGGCCG
Found at i:31872641 original size:30 final size:30
Alignment explanation
Indices: 31872607--31872667 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
31872597 TCCTTAACTC
31872607 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
31872637 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
31872667 A
1 A
31872668 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:31883570 original size:17 final size:17
Alignment explanation
Indices: 31883548--31883587 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
31883538 ATCACTTACC
*
31883548 GTGTGTCACGCAC-AGCT
1 GTGTGTCACACACGA-CT
31883565 GTGTGTCACACACGACT
1 GTGTGTCACACACGACT
31883582 GTGTGT
1 GTGTGT
31883588 TAGCCCGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 20 0.95
18 1 0.05
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.28
Consensus pattern (17 bp):
GTGTGTCACACACGACT
Found at i:31884511 original size:19 final size:20
Alignment explanation
Indices: 31884487--31884528 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
31884477 GTCCCAAAGC
*
31884487 CATTCAA-TTTATACAATGT
1 CATTCAACTTAATACAATGT
*
31884506 CATTCAACTTAATTCAATGT
1 CATTCAACTTAATACAATGT
31884526 CAT
1 CAT
31884529 CTAATCAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.40
Consensus pattern (20 bp):
CATTCAACTTAATACAATGT
Found at i:31887508 original size:41 final size:41
Alignment explanation
Indices: 31887463--31887545 Score: 157
Period size: 41 Copynumber: 2.0 Consensus size: 41
31887453 TACTTGAGTT
31887463 AGTGCGTGAAAAAGAAGAAAAAGTCTATGTTATCCATAGTC
1 AGTGCGTGAAAAAGAAGAAAAAGTCTATGTTATCCATAGTC
*
31887504 AGTGCGTGAAACAGAAGAAAAAGTCTATGTTATCCATAGTC
1 AGTGCGTGAAAAAGAAGAAAAAGTCTATGTTATCCATAGTC
31887545 A
1 A
31887546 TTTGAAAGAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.24
Consensus pattern (41 bp):
AGTGCGTGAAAAAGAAGAAAAAGTCTATGTTATCCATAGTC
Found at i:31891280 original size:15 final size:15
Alignment explanation
Indices: 31891245--31891273 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
31891235 TTGGATCGTA
31891245 CATACTAGCATGTTG
1 CATACTAGCATGTTG
31891260 CATACTAGCATGTT
1 CATACTAGCATGTT
31891274 CTGTACTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (15 bp):
CATACTAGCATGTTG
Found at i:31898844 original size:23 final size:23
Alignment explanation
Indices: 31898814--31898860 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
31898804 TGACGATTGT
*
31898814 TTAATGTTCAGAAATCGGATATG
1 TTAATGTTCAGAAATCAGATATG
31898837 TTAATGTTCAGAAATCAGATATG
1 TTAATGTTCAGAAATCAGATATG
31898860 T
1 T
31898861 GTACCAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (23 bp):
TTAATGTTCAGAAATCAGATATG
Found at i:31901540 original size:55 final size:54
Alignment explanation
Indices: 31901410--31901542 Score: 131
Period size: 55 Copynumber: 2.4 Consensus size: 54
31901400 AGGATACTAA
* * * * *
31901410 GTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCTAAAAGGCAAGGAAATCAT
1 GTAAGACCATGCCAAGGCATGGCATTGATAACTACTAAAAGGCAAAGAAACCAT
* * * ** * * **
31901464 GTAATATCGTGTTAAGACATGGCATTGATAAACTACTATAAGGCAAAGATCCCAT
1 GTAAGACCATGCCAAGGCATGGCATTGAT-AACTACTAAAAGGCAAAGAAACCAT
31901519 GTAAGACCATGCCAAGGCATGGCA
1 GTAAGACCATGCCAAGGCATGGCA
31901543 ATGGTGAATT
Statistics
Matches: 58, Mismatches: 20, Indels: 1
0.73 0.25 0.01
Matches are distributed among these distances:
54 22 0.38
55 36 0.62
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (54 bp):
GTAAGACCATGCCAAGGCATGGCATTGATAACTACTAAAAGGCAAAGAAACCAT
Found at i:31903930 original size:17 final size:18
Alignment explanation
Indices: 31903900--31903934 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
31903890 CCATATGCCT
*
31903900 GTATAGGCCCACACGCCC
1 GTATAGGCCAACACGCCC
31903918 GTAT-GGCCAACACGCCC
1 GTATAGGCCAACACGCCC
31903935 AGATTGGCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.23, C:0.43, G:0.23, T:0.11
Consensus pattern (18 bp):
GTATAGGCCAACACGCCC
Found at i:31910947 original size:38 final size:38
Alignment explanation
Indices: 31910886--31910986 Score: 132
Period size: 38 Copynumber: 2.6 Consensus size: 38
31910876 ATTTGATGTG
*
31910886 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAAATA
1 TATCCGGG-TTAAA-TCCCGCAGGCT-TCATGCTGGAAATA
* *
31910926 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAAATA
*
31910964 TATCCGGGTTAAATCCCGTAGGC
1 TATCCGGGTTAAATCCCGCAGGC
31910987 CTAGTACTGG
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
37 1 0.02
38 42 0.75
39 5 0.09
40 8 0.14
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAAATA
Found at i:31910997 original size:38 final size:38
Alignment explanation
Indices: 31910924--31911005 Score: 121
Period size: 38 Copynumber: 2.2 Consensus size: 38
31910914 ATGCTGGAAA
* *
31910924 TATATCCGGGTTAAATCCCGCAGGCTTCATGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTCATACTGGTAT
*
31910962 TATATCCGGGTTAAATCCCGTAGGCCT-AGTACTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCCTCA-TACTGGTAT
31911000 TATATC
1 TATATC
31911006 TGAGCTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 1 0.03
38 39 0.98
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCCTCATACTGGTAT
Found at i:31912905 original size:27 final size:26
Alignment explanation
Indices: 31912843--31912928 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
31912833 AGCATGGCTG
* **
31912843 CCAGAACAGATAATATGACAGAGTAA
1 CCAGAACAGATAATATGGCAGAGCCA
*
31912869 CCAGATACAGATAATCCTGGCAGAGCCA
1 CCAGA-ACAGATAAT-ATGGCAGAGCCA
*
31912897 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATATGGCAGAGCCA
31912924 CCAGA
1 CCAGA
31912929 TTAGATCATT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 5 0.10
27 32 0.62
28 15 0.29
ACGTcount: A:0.41, C:0.23, G:0.22, T:0.14
Consensus pattern (26 bp):
CCAGAACAGATAATATGGCAGAGCCA
Found at i:31912934 original size:27 final size:27
Alignment explanation
Indices: 31912868--31912954 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
31912858 TGACAGAGTA
* **
31912868 ACCAGATACAGATAATCCTGGCAGAGCC
1 ACCAGA-ACAGATCATTGTGGCAGAGCC
31912896 ACCAGAACAGAT-ATATGTGGCAGAGCC
1 ACCAGAACAGATCAT-TGTGGCAGAGCC
** *
31912923 ACCAGATTAGATCATTGTGGCATAGCC
1 ACCAGAACAGATCATTGTGGCAGAGCC
31912950 ACCAG
1 ACCAG
31912955 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
26 2 0.04
27 42 0.81
28 8 0.15
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.17
Consensus pattern (27 bp):
ACCAGAACAGATCATTGTGGCAGAGCC
Found at i:31920743 original size:27 final size:27
Alignment explanation
Indices: 31920712--31920813 Score: 93
Period size: 27 Copynumber: 3.7 Consensus size: 27
31920702 TTGCCAGAAT
* *
31920712 AGATAATGTGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
* * *
31920739 AGATAATCGGGGTAGAGCCACTAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
31920766 AAATATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
31920793 AGATAATTGTGGC-GTAGCCAC
1 AGATAA-TGTGGCAG-AGCCAC
31920814 TAGGACGCTT
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
26 2 0.03
27 44 0.73
28 14 0.23
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.19
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:31940723 original size:26 final size:26
Alignment explanation
Indices: 31940639--31940774 Score: 172
Period size: 26 Copynumber: 5.3 Consensus size: 26
31940629 CTGGAGGCCT
31940639 AGCCTCTTTT-AAT-AACTGGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
31940663 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
*
31940688 AGCCATTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** * *
31940714 AGCCCTTTTCGGTAAACTGAGGAATA
1 AGCCCTTTTCAATAAACTGGGGCATA
31940740 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
31940766 AGCCCTTTT
1 AGCCCTTTT
31940775 GCACTTCCTC
Statistics
Matches: 95, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 32 0.34
26 53 0.56
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:31940759 original size:52 final size:51
Alignment explanation
Indices: 31940639--31940774 Score: 206
Period size: 52 Copynumber: 2.7 Consensus size: 51
31940629 CTGGAGGCCT
* *
31940639 AGCCTCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGAAA
*
31940688 AGCCATTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGAATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGAA-A
31940740 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
31940775 GCACTTCCTC
Statistics
Matches: 79, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
48 4 0.05
49 7 0.09
50 10 0.13
51 23 0.29
52 35 0.44
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGAGGAAA
Found at i:31940855 original size:11 final size:11
Alignment explanation
Indices: 31940824--31940879 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
31940814 TTATGAATTC
31940824 ATCATGTGCAT
1 ATCATGTGCAT
* *
31940835 TTCA--TACAT
1 ATCATGTGCAT
31940844 ATCATGTGCAT
1 ATCATGTGCAT
*
31940855 ATCA--TACAT
1 ATCATGTGCAT
31940864 ATCATGTGCAT
1 ATCATGTGCAT
31940875 ATCAT
1 ATCAT
31940880 ATCAGTCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:31940889 original size:40 final size:38
Alignment explanation
Indices: 31940824--31940898 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 38
31940814 TTATGAATTC
*
31940824 ATCATGTGCATTTCATACATATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACATATCATGT--ATATCATACAT
*
31940864 ATCATGTGCATATCATATCA-GTCATGTATATCATA
1 ATCATGTGCATATCATA-CATATCATGTATATCATA
31940899 TCCCACGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
38 8 0.25
40 22 0.69
41 2 0.06
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (38 bp):
ATCATGTGCATATCATACATATCATGTATATCATACAT
Found at i:31940890 original size:20 final size:20
Alignment explanation
Indices: 31940824--31940880 Score: 105
Period size: 20 Copynumber: 2.9 Consensus size: 20
31940814 TTATGAATTC
*
31940824 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
31940844 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
31940864 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
31940881 TCAGTCATGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:31943168 original size:48 final size:48
Alignment explanation
Indices: 31943113--31943439 Score: 211
Period size: 48 Copynumber: 6.8 Consensus size: 48
31943103 GTGAATTACC
* * * * *
31943113 GATGCCATATTCCAAACATGGTCTTACACTGGCTCACATGTTGAGGCT
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATGTTAATGCT
* * * * * *
31943161 GATGCCATG-TCCTAGACATGGTTTTACGCTAGCTCTCGTCTTAATGTT
1 GATGCCATGTTCC-AGACATGGTCTTACACTAGCTCACATGTTAATGCT
* * * **
31943209 GATGTCATGTTCCAGAGATGGTCTTACACTGGCTCTCACAATG-TGGT-C-
1 GATGCCATGTTCCAGACATGGTCTTACACTAG--CTCAC-ATGTTAATGCT
* * * * *
31943257 GATGCCATGTCCCAGACATGGTCTTACACTAG-TGCACATATCAATACC
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCT-CACATGTTAATGCT
* * *
31943305 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-TATATTG-T
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATGT-TAATGCT
* * * * * * * *
31943352 CGATGCCATTTTCCAAACATAGTCTTACACTGGCTCTCAT-ATCATGGCC
1 -GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATGTTAAT-GCT
* * *
31943401 GAAGCCATGTCCCAGACATGGTCTTACACTAGCGCACAT
1 GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACAT
31943440 ATCACTCAAA
Statistics
Matches: 213, Mismatches: 52, Indels: 28
0.73 0.18 0.10
Matches are distributed among these distances:
45 3 0.01
46 4 0.02
47 7 0.03
48 188 0.88
49 4 0.02
50 6 0.03
51 1 0.00
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (48 bp):
GATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATGTTAATGCT
Found at i:31943314 original size:96 final size:95
Alignment explanation
Indices: 31943109--31943430 Score: 301
Period size: 96 Copynumber: 3.4 Consensus size: 95
31943099 AAGGGTGAAT
* * * *
31943109 TACCGATGCCATATTCCAAACATGGTCTTACACTGG--CTCACATGTTGAGGCTGATGCCATGTC
1 TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATG-TG-GTC-GATGCCATGTC
* * * * * *
31943172 CTAGACATGGTTTTACGCTAGCTCTCGTCTTAA
63 CCAGACATGGTCTTACACTAGCTCTCATATCAA
*** * * *
31943205 TGTTGATGTCATGTTCCAGAGATGGTCTTACACTGGCTCTCACAATGTGGTCGATGCCATGTCCC
1 TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAC-ATGTGGTCGATGCCATGTCCC
*
31943270 AGACATGGTCTTACACTAG-TGCACATATCAA
65 AGACATGGTCTTACACTAGCT-CTCATATCAA
* * * * * *
31943301 TACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATTATATTGTCGATGCCATTTTCC
1 TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA-CATGTGGTCGATGCCATGTCCC
* * *
31943366 AAACATAGTCTTACACTGGCTCTCATATC-A
65 AGACATGGTCTTACACTAGCTCTCATATCAA
* *
31943396 TGGCCGAAGCCATGTCCCAGACATGGTCTTACACT
1 T-ACCGATGCCATGTCCCAGACATGGTCTTACACT
31943431 AGCGCACATA
Statistics
Matches: 186, Mismatches: 33, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
95 3 0.02
96 170 0.91
97 3 0.02
98 7 0.04
99 3 0.02
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (95 bp):
TACCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATGTGGTCGATGCCATGTCCCA
GACATGGTCTTACACTAGCTCTCATATCAA
Found at i:31943377 original size:144 final size:144
Alignment explanation
Indices: 31943161--31943443 Score: 390
Period size: 144 Copynumber: 2.0 Consensus size: 144
31943151 TGTTGAGGCT
* * * * * * * *
31943161 GATGCCATGTCCTAGACATGGTTTTACGCTAGCTCTCGTCTTAATGTTGATGTCATGTTCCAGAG
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAATGTCGATGCCATGTTCCAAAC
* * * * *
31943226 ATGGTCTTACACTGGCTCTCACAAT-GTGGTCGATGCCATGTCCCAGACATGGTCTTACACTAGT
66 ATAGTCTTACACTGGCTCTCA-AATCATGGCCGAAGCCATGTCCCAGACATGGTCTTACACTAGC
31943290 GCACATATCAATACC
130 GCACATATCAATACC
* *
31943305 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-TATATTGTCGATGCCATTTTCCAAA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCT-TAATGTCGATGCCATGTTCCAAA
*
31943369 CATAGTCTTACACTGGCTCTCATATCATGGCCGAAGCCATGTCCCAGACATGGTCTTACACTAGC
65 CATAGTCTTACACTGGCTCTCAAATCATGGCCGAAGCCATGTCCCAGACATGGTCTTACACTAGC
31943434 GCACATATCA
130 GCACATATCA
31943444 CTCAAATGCC
Statistics
Matches: 121, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
143 3 0.02
144 118 0.98
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.30
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTTAATGTCGATGCCATGTTCCAAAC
ATAGTCTTACACTGGCTCTCAAATCATGGCCGAAGCCATGTCCCAGACATGGTCTTACACTAGCG
CACATATCAATACC
Found at i:31943441 original size:48 final size:47
Alignment explanation
Indices: 31943256--31943443 Score: 216
Period size: 48 Copynumber: 3.9 Consensus size: 47
31943246 ACAATGTGGT
* *
31943256 CGATGCCATGTCCCAGACATGGTCTTACACTAGTGCACATATCAATAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATC-ATGC
* * *
31943304 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATTAT-ATTGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACA-TATCA-TGC
* * * * * * *
31943352 CGATGCCATTTTCCAAACATAGTCTTACACTGGCTCTCATATCATGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAT-GC
*
31943400 CGAAGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCA
31943444 CTCAAATGCC
Statistics
Matches: 117, Mismatches: 19, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
47 5 0.04
48 109 0.93
49 3 0.03
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.28
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCATGC
Found at i:31949043 original size:40 final size:40
Alignment explanation
Indices: 31948981--31949204 Score: 204
Period size: 40 Copynumber: 5.6 Consensus size: 40
31948971 AACCCAAGTA
* * *
31948981 CCTTCGGGATTTA-ACCGGATATAGCAAATCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAAATCGCACAAATG
* *
31949020 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAAATCGCACAAATG
* * * * *
31949060 CCTTCGGGACTTAGCCCGAATATGGTC-ACTAGCATAAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAAATCGCA-CAAATG
* * * * *
31949101 CCTTCGGGTCTTAGCCCGGATATCGTC-ACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAAATCGCACAAATG
* * *
31949141 CCTTCGGGACTTAACCCGGATATAGGC-ACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATA-GCAAATCGCACAAA-TG
*
31949182 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
31949205 CATCCGAATA
Statistics
Matches: 159, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
39 12 0.08
40 88 0.55
41 59 0.37
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAAATCGCACAAATG
Found at i:31949114 original size:41 final size:40
Alignment explanation
Indices: 31949015--31949204 Score: 238
Period size: 40 Copynumber: 4.7 Consensus size: 40
31949005 CAAATCGTAC
* * * *
31949015 AAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATGGTCACTAGCAA
*
31949055 AAATGCCTTCGGGACTTAGCCCGAATATGGTCACTAGCATA
1 AAATGCCTTCGGGACTTAGCCCGGATATGGTCACTAGCA-A
* * **
31949096 AAATGCCTTCGGGTCTTAGCCCGGATATCGTCACTAGCGC
1 AAATGCCTTCGGGACTTAGCCCGGATATGGTCACTAGCAA
*
31949136 AAATGCCTTCGGGACTTAACCCGGATATAGG-CACTAGCACA
1 AAATGCCTTCGGGACTTAGCCCGGATAT-GGTCACTAGCA-A
* *
31949177 AAGTGCCTTCGGGTCTTAGCCCGGATAT
1 AAATGCCTTCGGGACTTAGCCCGGATAT
31949205 CATCCGAATA
Statistics
Matches: 129, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
40 68 0.53
41 61 0.47
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATATGGTCACTAGCAA
Found at i:31949205 original size:81 final size:80
Alignment explanation
Indices: 31948981--31949205 Score: 285
Period size: 81 Copynumber: 2.8 Consensus size: 80
31948971 AACCCAAGTA
* * * * * *
31948981 CCTTCGGGATTTAA-CCGGATATA-GCAAATCGTACAAATGCCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGACTTAACCCGGATATAGGC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATC
*
31949044 GTAACTCGCACAAATG
65 GTAACTAGCACAAATG
* * *
31949060 CCTTCGGGACTTAGCCCGAATAT-GGTCACTAGCATAAAATGCCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAACCCGGATATAGG-CACTAGCA-CAAATGCCTTCGGGTCTTAGCCCGGATAT
* *
31949124 CGTCACTAGCGCAAATG
64 CGTAACTAGCACAAATG
31949141 CCTTCGGGACTTAACCCGGATATAGGCACTAGCACAAAGTGCCTTCGGGTCTTAGCCCGGATATC
1 CCTTCGGGACTTAACCCGGATATAGGCACTAGCACAAA-TGCCTTCGGGTCTTAGCCCGGATATC
31949206 ATCCGAATAA
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
79 12 0.10
80 15 0.12
81 96 0.77
82 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGGCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCG
TAACTAGCACAAATG
Found at i:31952056 original size:19 final size:18
Alignment explanation
Indices: 31952025--31952060 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
31952015 TTAAAATATT
*
31952025 TTTTAAACAAATTTAAAG
1 TTTTAAAAAAATTTAAAG
31952043 TTTTAAAAATAATTTAAA
1 TTTTAAAAA-AATTTAAA
31952061 ATCATTTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (18 bp):
TTTTAAAAAAATTTAAAG
Found at i:31959715 original size:31 final size:31
Alignment explanation
Indices: 31959680--31959789 Score: 184
Period size: 31 Copynumber: 3.5 Consensus size: 31
31959670 CAGCATATAG
31959680 TGGGCCGAAGCCTTTACATTATTCATATCAC
1 TGGGCCGAAGCCTTTACATTATTCATATCAC
* *
31959711 TGGGCAGAAGCCTTTTCATTATTCATATCAC
1 TGGGCCGAAGCCTTTACATTATTCATATCAC
*
31959742 TGGGCCGAAGCCTTTTCATTATTCATATCAC
1 TGGGCCGAAGCCTTTACATTATTCATATCAC
*
31959773 TGGGCCAAAGCCTTTAC
1 TGGGCCGAAGCCTTTAC
31959790 TGTAACAATA
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 74 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (31 bp):
TGGGCCGAAGCCTTTACATTATTCATATCAC
Found at i:31960022 original size:25 final size:25
Alignment explanation
Indices: 31959994--31960076 Score: 89
Period size: 26 Copynumber: 3.3 Consensus size: 25
31959984 CTGGAGGCCT
31959994 AGCCTCTTTTAAT-AACTGGGGCAAA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
31960019 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCC-TTTTAATAAACTGGGGCAAA
** *
31960045 AGCCCTTTTCGGTAAACTAGGGC-AA
1 AGCCCTTTT-AATAAACTGGGGCAAA
31960070 AGCCCTT
1 AGCCCTT
31960077 AGCCCTTTTG
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
24 1 0.02
25 23 0.44
26 28 0.54
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.27
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:31960043 original size:26 final size:26
Alignment explanation
Indices: 31960007--31960076 Score: 106
Period size: 26 Copynumber: 2.7 Consensus size: 26
31959997 CTCTTTTAAT
*
31960007 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
31960033 AACTGGGGCAAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
31960059 AACTAGGGC-AAAGCCCTT
1 AACTGGGGCAAAAGCCCTT
31960077 AGCCCTTTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
25 9 0.22
26 32 0.78
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGATA
Found at i:31971966 original size:31 final size:31
Alignment explanation
Indices: 31971931--31972031 Score: 132
Period size: 31 Copynumber: 3.3 Consensus size: 31
31971921 TATTGGGCCA
* *
31971931 AAGCCTTTACATTATTCATATCTCTGGGCAG
1 AAGCCTTTTCATTATTCATATCACTGGGCAG
*
31971962 AAGCCTTTTCATTATTCATATCACTGGGCCG
1 AAGCCTTTTCATTATTCATATCACTGGGCAG
* * *
31971993 AGGCCTTTTCATTATTCATATAATTGGGCCA-
1 AAGCCTTTTCATTATTCATATCACTGGG-CAG
31972024 AAGCCTTT
1 AAGCCTTT
31972032 ACTGTAACAA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
31 60 0.98
32 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.37
Consensus pattern (31 bp):
AAGCCTTTTCATTATTCATATCACTGGGCAG
Found at i:31972320 original size:24 final size:25
Alignment explanation
Indices: 31972250--31972345 Score: 115
Period size: 24 Copynumber: 3.9 Consensus size: 25
31972240 CCTCTTTTAA
* *
31972250 TAACTGGGGCAAAATCCCTTTTTGA
1 TAACTGGGGCAAAAGCCCTTTTTGG
*
31972275 TAAACTGCGGCAAAAGCCCTTTTTGG
1 T-AACTGGGGCAAAAGCCCTTTTTGG
* *
31972301 TAACTGGGGC-GAAGCCCTTTTCGG
1 TAACTGGGGCAAAAGCCCTTTTTGG
*
31972325 TAACTGGGGC-ATAGCCCTTTT
1 TAACTGGGGCAAAAGCCCTTTT
31972346 GCACTTCCTC
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
24 31 0.50
25 9 0.15
26 22 0.35
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (25 bp):
TAACTGGGGCAAAAGCCCTTTTTGG
Found at i:31972408 original size:11 final size:11
Alignment explanation
Indices: 31972392--31972425 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
31972382 AAATGAAAAC
31972392 ATCATGTGCAT
1 ATCATGTGCAT
31972403 ATCA--TGCAT
1 ATCATGTGCAT
31972412 ATCATGTGCAT
1 ATCATGTGCAT
31972423 ATC
1 ATC
31972426 GTATCAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 9 0.43
11 12 0.57
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.35
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:31975876 original size:14 final size:14
Alignment explanation
Indices: 31975857--31975883 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
31975847 TAACTCAAGC
31975857 ATTAAGAACAAATA
1 ATTAAGAACAAATA
31975871 ATTAAGAACAAAT
1 ATTAAGAACAAAT
31975884 CAAGTATTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (14 bp):
ATTAAGAACAAATA
Found at i:31978375 original size:6 final size:6
Alignment explanation
Indices: 31978353--31978392 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
31978343 AAGAAAATAA
* *
31978353 TAAAAT TGAAA- TGAAAT TAAAAT TAAAAT TAAAAT TAAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAA
31978393 AGATAAGAGG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (6 bp):
TAAAAT
Found at i:31978375 original size:17 final size:18
Alignment explanation
Indices: 31978353--31978392 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
31978343 AAGAAAATAA
* *
31978353 TAAAATTGAAA-TGAAAT
1 TAAAATTAAAATTAAAAT
31978370 TAAAATTAAAATTAAAAT
1 TAAAATTAAAATTAAAAT
31978388 TAAAA
1 TAAAA
31978393 AGATAAGAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (18 bp):
TAAAATTAAAATTAAAAT
Found at i:31982780 original size:28 final size:28
Alignment explanation
Indices: 31982748--31982801 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
31982738 AACCCATGGA
31982748 GAGGGCACCTTCTTAGTAAGTCCTTGGT
1 GAGGGCACCTTCTTAGTAAGTCCTTGGT
31982776 GAGGGCACCTTCTTAGTAAGTCCTTG
1 GAGGGCACCTTCTTAGTAAGTCCTTG
31982802 TATCTCTCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (28 bp):
GAGGGCACCTTCTTAGTAAGTCCTTGGT
Found at i:31988614 original size:28 final size:27
Alignment explanation
Indices: 31988566--31988670 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
31988556 CTGCCAGAAT
* * *
31988566 AGATAATATGACAGAGTCACCAGATAC
1 AGATAATGTGGCAGAGCCACCAGATAC
31988593 AGATAATCGTGGCAGAGCCACCAGA-AC
1 AGATAAT-GTGGCAGAGCCACCAGATAC
*
31988620 AGATATATGTGGCAGAGCCACTAGAT-C
1 AGATA-ATGTGGCAGAGCCACCAGATAC
31988647 AGATAATTGTGGC-GTAGCCACCAG
1 AGATAA-TGTGGCAG-AGCCACCAG
31988671 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
26 2 0.03
27 50 0.74
28 16 0.24
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (27 bp):
AGATAATGTGGCAGAGCCACCAGATAC
Found at i:31988624 original size:54 final size:54
Alignment explanation
Indices: 31988559--31988670 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
31988549 AGTATGGCTG
* *
31988559 CCAGAATAGATA-ATATGACAGAGTCACCAGATACAGATAATCGTGGCAG-AGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGAT-CAGATAATCGTGGC-GTAGCCA
* * * *
31988613 CCAGAACAGATATATGTGGCAGAGCCACTAGATCAGATAATTGTGGCGTAGCCA
1 CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCGTAGCCA
31988667 CCAG
1 CCAG
31988671 GACGCTTCCT
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.66
55 16 0.32
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (54 bp):
CCAGAACAGATATATATGACAGAGCCACCAGATCAGATAATCGTGGCGTAGCCA
Found at i:31991136 original size:20 final size:19
Alignment explanation
Indices: 31991111--31991150 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
31991101 GTAGAAATTA
31991111 TTATTCCCAGAAAATAGAAT
1 TTATTCCCAGAAAATA-AAT
**
31991131 TTATTCTTAGAAAATAAAT
1 TTATTCCCAGAAAATAAAT
31991150 T
1 T
31991151 CTCACTTCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.38
Consensus pattern (19 bp):
TTATTCCCAGAAAATAAAT
Found at i:31996129 original size:14 final size:15
Alignment explanation
Indices: 31996110--31996142 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
31996100 AAATAGTAAT
31996110 AAAAT-AAAAATAAA
1 AAAATAAAAAATAAA
31996124 AAAATAAAAAATAAA
1 AAAATAAAAAATAAA
31996139 AAAA
1 AAAA
31996143 ACAGATTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (15 bp):
AAAATAAAAAATAAA
Found at i:32010700 original size:22 final size:22
Alignment explanation
Indices: 32010643--32010690 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
32010633 ATATCCAAAT
**
32010643 AATAACAACAAAATAGTAGCAA
1 AATAACAGTAAAATAGTAGCAA
* *
32010665 CATAACAGTAAAATGGTAGCAA
1 AATAACAGTAAAATAGTAGCAA
32010687 AATA
1 AATA
32010691 GAGAGAAAAT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.17
Consensus pattern (22 bp):
AATAACAGTAAAATAGTAGCAA
Found at i:32011527 original size:3 final size:3
Alignment explanation
Indices: 32011519--32011546 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
32011509 AGTAGGTGAA
32011519 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A
32011547 GTTGAACTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:32017118 original size:24 final size:26
Alignment explanation
Indices: 32017053--32017133 Score: 103
Period size: 25 Copynumber: 3.2 Consensus size: 26
32017043 TCTCATTCTT
* * * **
32017053 ATTTTACCCCCAATAAAATTTTAACA
1 ATTTTACCCCTAGTAAAATTTTGATG
32017079 ATTTTACCCCTAGTAAAA-TTTGATG
1 ATTTTACCCCTAGTAAAATTTTGATG
32017104 ATTTTA-CCCTAGTAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGATG
32017129 ATTTT
1 ATTTT
32017134 GCCATTGGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
24 11 0.22
25 22 0.45
26 16 0.33
ACGTcount: A:0.35, C:0.16, G:0.07, T:0.42
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGATG
Found at i:32022594 original size:29 final size:29
Alignment explanation
Indices: 32022552--32022610 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
32022542 CTTGATTGAA
* *
32022552 TCTTAGATTCCATGAGTGGGACTCTTGCT
1 TCTTAGATTCCATGAATGGGACACTTGCT
32022581 TCTTAGATTCCATGAATGGGACACTTGCT
1 TCTTAGATTCCATGAATGGGACACTTGCT
32022610 T
1 T
32022611 AACTCCATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (29 bp):
TCTTAGATTCCATGAATGGGACACTTGCT
Found at i:32025423 original size:4 final size:4
Alignment explanation
Indices: 32025410--32025449 Score: 50
Period size: 4 Copynumber: 10.5 Consensus size: 4
32025400 GTCACCTTAT
32025410 TTTC -TTC TTTC TTT- TTTC TTT- TTTC TTTC TTTTC TTTC TT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTTC TTTC TT
32025450 AGTTTTGTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
3 9 0.28
4 19 0.59
5 4 0.12
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (4 bp):
TTTC
Found at i:32025428 original size:14 final size:14
Alignment explanation
Indices: 32025409--32025449 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
32025399 CGTCACCTTA
32025409 TTTTCTTCTTTCTT
1 TTTTCTTCTTTCTT
*
32025423 TTTTCTTTTTTCTT
1 TTTTCTTCTTTCTT
*
32025437 TCTT-TTCTTTCTT
1 TTTTCTTCTTTCTT
32025450 AGTTTTGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 8 0.33
14 16 0.67
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTCTTCTTTCTT
Found at i:32025455 original size:22 final size:19
Alignment explanation
Indices: 32025409--32025449 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 19
32025399 CGTCACCTTA
32025409 TTTTCTTCTTTC-TTTTTTC
1 TTTT-TTCTTTCTTTTTTTC
32025428 TTTTTTCTTTCTTTTCTTTC
1 TTTTTTCTTTCTTTT-TTTC
32025448 TT
1 TT
32025450 AGTTTTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 7 0.35
19 7 0.35
20 6 0.30
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTCTTTCTTTTTTTC
Found at i:32028870 original size:21 final size:21
Alignment explanation
Indices: 32028838--32028887 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
32028828 ATATAAATGA
*
32028838 ATTTAACA-TCAATTTAATAC
1 ATTTCACACTCAATTTAATAC
*
32028858 ATTTCACACTCAATTTAATTC
1 ATTTCACACTCAATTTAATAC
*
32028879 AATTCACAC
1 ATTTCACAC
32028888 CCTAAGAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 7 0.27
21 19 0.73
ACGTcount: A:0.40, C:0.22, G:0.00, T:0.38
Consensus pattern (21 bp):
ATTTCACACTCAATTTAATAC
Found at i:32031767 original size:20 final size:20
Alignment explanation
Indices: 32031730--32031767 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
32031720 CATTTTCGAA
*
32031730 TTATAAAAAACATGAAAAAC
1 TTATAAAAAACATAAAAAAC
32031750 TTAT-AAAAACTATAAAAA
1 TTATAAAAAAC-ATAAAAA
32031768 TTATTAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.66, C:0.08, G:0.03, T:0.24
Consensus pattern (20 bp):
TTATAAAAAACATAAAAAAC
Found at i:32031775 original size:19 final size:19
Alignment explanation
Indices: 32031728--32031792 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
32031718 TTCATTTTCG
*
32031728 AATTATAAAAAAC-ATGAAA
1 AATTATTAAAAACTAT-AAA
32031747 AACTTA-TAAAAACTATAAA
1 AA-TTATTAAAAACTATAAA
32031766 AATTATT--AAACTATATAA
1 AATTATTAAAAACTATA-AA
32031784 TAATTATTA
1 -AATTATTA
32031793 TAAATTAACT
Statistics
Matches: 39, Mismatches: 1, Indels: 11
0.76 0.02 0.22
Matches are distributed among these distances:
17 8 0.21
18 5 0.13
19 21 0.54
20 5 0.13
ACGTcount: A:0.60, C:0.06, G:0.02, T:0.32
Consensus pattern (19 bp):
AATTATTAAAAACTATAAA
Found at i:32031925 original size:9 final size:10
Alignment explanation
Indices: 32031909--32031934 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
32031899 AAAAACTATA
32031909 ATTTTTTTTC
1 ATTTTTTTTC
32031919 ATTTTTTTTC
1 ATTTTTTTTC
32031929 ATTTTT
1 ATTTTT
32031935 ATTAAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.81
Consensus pattern (10 bp):
ATTTTTTTTC
Found at i:32032281 original size:19 final size:20
Alignment explanation
Indices: 32032257--32032301 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
32032247 TGGTTTTAAT
32032257 TAATTTCTAATAAT-TCTTA
1 TAATTTCTAATAATCTCTTA
* *
32032276 TAATTTTTAATAATCTTTTA
1 TAATTTCTAATAATCTCTTA
32032296 TAATTT
1 TAATTT
32032302 TATAATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.57
20 10 0.43
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (20 bp):
TAATTTCTAATAATCTCTTA
Found at i:32032286 original size:30 final size:29
Alignment explanation
Indices: 32032250--32032312 Score: 76
Period size: 29 Copynumber: 2.1 Consensus size: 29
32032240 AATATTATGG
32032250 TTTTAATTAAT-TTCTAATAATTCTTATAAT-
1 TTTTAA-TAATCTT-TAATAATT-TTATAATA
*
32032280 TTTTAATAATCTTTTATAATTTTATAATA
1 TTTTAATAATCTTTAATAATTTTATAATA
32032309 TTTT
1 TTTT
32032313 TATGTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
28 7 0.23
29 15 0.50
30 8 0.27
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (29 bp):
TTTTAATAATCTTTAATAATTTTATAATA
Found at i:32032288 original size:10 final size:10
Alignment explanation
Indices: 32032250--32032331 Score: 68
Period size: 10 Copynumber: 8.5 Consensus size: 10
32032240 AATATTATGG
32032250 TTTTAATTAAT
1 TTTTAA-TAAT
*
32032261 TTCTAATAAT
1 TTTTAATAAT
*
32032271 TCTT-ATAAT
1 TTTTAATAAT
32032280 TTTTAATAAT
1 TTTTAATAAT
32032290 CTTTT-ATAAT
1 -TTTTAATAAT
32032300 TTTATAAT-AT
1 TTT-TAATAAT
*
32032310 TTTT-AT-GT
1 TTTTAATAAT
32032318 TTTT-ATAAT
1 TTTTAATAAT
32032327 TTTTA
1 TTTTA
32032332 GAATGTATCT
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
8 9 0.15
9 17 0.29
10 22 0.37
11 11 0.19
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (10 bp):
TTTTAATAAT
Found at i:32032302 original size:19 final size:18
Alignment explanation
Indices: 32032257--32032331 Score: 64
Period size: 19 Copynumber: 4.0 Consensus size: 18
32032247 TGGTTTTAAT
*
32032257 TAATTTCTAATAATTCTTA
1 TAATTT-TAATAATTTTTA
32032276 TAATTTTTAATAATCTTTTA
1 TAA-TTTTAATAAT-TTTTA
32032296 TAATTTT-ATAATATTTT-
1 TAATTTTAATAAT-TTTTA
* *
32032313 TATGTTTTTATAATTTTTA
1 TA-ATTTTAATAATTTTTA
32032332 GAATGTATCT
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
17 2 0.04
18 17 0.35
19 19 0.40
20 10 0.21
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (18 bp):
TAATTTTAATAATTTTTA
Found at i:32032360 original size:16 final size:17
Alignment explanation
Indices: 32032339--32032371 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
32032329 TTAGAATGTA
32032339 TCTAGA-CAAATGAATG
1 TCTAGATCAAATGAATG
32032355 TCTAGATTCAAATGAAT
1 TCTAGA-TCAAATGAAT
32032372 CTAAACATCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (17 bp):
TCTAGATCAAATGAATG
Found at i:32032517 original size:32 final size:32
Alignment explanation
Indices: 32032476--32032541 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 32
32032466 GACGATAACG
* * **
32032476 TGGAGCTATCACGTCAGCCTTCGATGATGACA
1 TGGAACTATCACGTCAACAGTCGATGATGACA
*
32032508 TGGAACTATCACGTCAACAGTCGGTGATGACA
1 TGGAACTATCACGTCAACAGTCGATGATGACA
32032540 TG
1 TG
32032542 ATATTGCCAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (32 bp):
TGGAACTATCACGTCAACAGTCGATGATGACA
Found at i:32033044 original size:20 final size:20
Alignment explanation
Indices: 32032959--32033035 Score: 73
Period size: 20 Copynumber: 3.6 Consensus size: 20
32032949 ATTGTACTAG
* *
32032959 AATTTTTAACAACATACCAA
1 AATTTGTAACAAAATACCAA
* * *
32032979 TATTTCTAACATGAAACATATCAA
1 AATTTGTAAC---AAA-ATACCAA
32033003 AATTTGTAACAAAATACCAA
1 AATTTGTAACAAAATACCAA
32033023 AATTTGTAACAAA
1 AATTTGTAACAAA
32033036 TATTGAAAAA
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
20 27 0.59
21 3 0.07
23 2 0.04
24 14 0.30
ACGTcount: A:0.51, C:0.16, G:0.04, T:0.30
Consensus pattern (20 bp):
AATTTGTAACAAAATACCAA
Found at i:32033140 original size:20 final size:20
Alignment explanation
Indices: 32033115--32033162 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
32033105 ATAAACTTTT
*
32033115 CAAAATTTCTAATAAAATAC
1 CAAAATTTCTAACAAAATAC
*
32033135 CAAAATTTGTAACAAAATAC
1 CAAAATTTCTAACAAAATAC
*
32033155 TAAAATTT
1 CAAAATTT
32033163 TTGACGGAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.54, C:0.12, G:0.02, T:0.31
Consensus pattern (20 bp):
CAAAATTTCTAACAAAATAC
Found at i:32034281 original size:22 final size:24
Alignment explanation
Indices: 32034247--32034316 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 24
32034237 TATGAATAGA
32034247 ATTAAA-TTAAATAAAATAAAT-T
1 ATTAAATTTAAATAAAATAAATAT
32034269 -TTAAATTTAAATAAATATAAAATAT
1 ATTAAATTTAAATAAA-AT-AAATAT
*
32034294 ATTAATATTATACATAAAATAAA
1 ATTAA-ATT-TAAATAAAATAAA
32034317 CACCTGTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
21 5 0.12
22 9 0.22
23 2 0.05
24 4 0.10
25 1 0.03
26 7 0.17
27 5 0.12
28 7 0.17
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (24 bp):
ATTAAATTTAAATAAAATAAATAT
Found at i:32046109 original size:16 final size:16
Alignment explanation
Indices: 32046090--32046120 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32046080 AATATTATTA
32046090 TATTATTAGATTAGTT
1 TATTATTAGATTAGTT
*
32046106 TATTATTTGATTAGT
1 TATTATTAGATTAGT
32046121 AGTTTTAATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (16 bp):
TATTATTAGATTAGTT
Found at i:32055596 original size:33 final size:33
Alignment explanation
Indices: 32055534--32055597 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
32055524 CATTTCTAAG
** *
32055534 TGGTACACACAAAGTATACCTTTCCTTTTCATA
1 TGGTACACACAAAGTATACCTAACATTTTCATA
*
32055567 TGGTATACACAAAGTATACCTAACATTTTCA
1 TGGTACACACAAAGTATACCTAACATTTTCA
32055598 AGTGTACACA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (33 bp):
TGGTACACACAAAGTATACCTAACATTTTCATA
Found at i:32060818 original size:3 final size:3
Alignment explanation
Indices: 32060810--32060836 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
32060800 TTTGGACCTT
32060810 CTA CTA CTA CTA CTA CTA CTA CTA CTA
1 CTA CTA CTA CTA CTA CTA CTA CTA CTA
32060837 TTTGTAGTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CTA
Found at i:32061403 original size:30 final size:30
Alignment explanation
Indices: 32061367--32061445 Score: 122
Period size: 30 Copynumber: 2.6 Consensus size: 30
32061357 ATTCCACATC
* * *
32061367 GGCTGGCCACACTGTCATGGGATCCCCATG
1 GGCTGGCCACACGGCCATGGGATCCCCATA
32061397 GGCTGGCCACACGGCCATGGGATCCCCATA
1 GGCTGGCCACACGGCCATGGGATCCCCATA
*
32061427 GGCTGGCCACATGGCCATG
1 GGCTGGCCACACGGCCATG
32061446 TCCCAAGCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.18, C:0.34, G:0.32, T:0.16
Consensus pattern (30 bp):
GGCTGGCCACACGGCCATGGGATCCCCATA
Found at i:32087461 original size:13 final size:13
Alignment explanation
Indices: 32087443--32087472 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
32087433 TGTTCTAAGT
32087443 AATGTGTTTTATA
1 AATGTGTTTTATA
32087456 AATGTGTTTTATA
1 AATGTGTTTTATA
32087469 AATG
1 AATG
32087473 GTTGTAATCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (13 bp):
AATGTGTTTTATA
Found at i:32093812 original size:46 final size:47
Alignment explanation
Indices: 32093665--32093931 Score: 221
Period size: 46 Copynumber: 5.7 Consensus size: 47
32093655 TTATTTGTGT
* * *
32093665 GCCAGTGTAAGA-CATGTCCGGGATATGCATTGGCCACATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCACATTATGAGA
32093711 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGA-GACGA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCACATT-ATGA-GA
*
32093757 GTGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTATGAGA
1 --GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCACATTATGAGA
* * * * * *
32093805 GCCAGTGTAAGA-CATGTCTAGGACATGCATTGGCTA-A-GA-GTTGT
1 GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCACATTATG-AGA
* * * * ** *
32093849 GCTAGTATAAGACCATGTCTGGGACATGGCATCGACCTCTATGGTGATA
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCAC-ATTATGAGA
*
32093898 GCCAGTGTAAGACCATGTCTAGGACATGACATCG
1 GCCAGTGTAAGACCATGTCTGGGACATG-CATCG
32093932 ACAACTTATC
Statistics
Matches: 178, Mismatches: 25, Indels: 33
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.01
44 12 0.07
45 20 0.11
46 60 0.34
47 26 0.15
48 22 0.12
49 36 0.20
50 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCATCGGCCACATTATGAGA
Found at i:32095687 original size:130 final size:132
Alignment explanation
Indices: 32095450--32095715 Score: 455
Period size: 130 Copynumber: 2.0 Consensus size: 132
32095440 CTAGTAGAGA
* *
32095450 GCGAGCCCGTGAGTATGGGCCAAGGTGGAGGGGCTAGCGAAGCCTACCTCCAGATGATGGATGCT
1 GCGAGCCCGTGAGTATGGGCCAAGGCGGAGGGGCTAGCGAA--CTACCTCCAAATGATGGATGCT
*
32095515 TGGTATTCGGAGTTTGTACGTGCGAACCCAAATAGTCCACCTCCCCCACCTCCTCCGATTCCTCA
64 TGGTATTCGGAGTTTGTACGTGCGAACCCAAACAGTCCACCTCCCCCACCTCCTCCGATTCCTCA
32095580 GTAT
129 GTAT
* *
32095584 GCGAGCCCGTGAGTATGGGCTAAGGCGGAGGGGTTAGCG-A-TACCTCCAAATGATGGATGCTTG
1 GCGAGCCCGTGAGTATGGGCCAAGGCGGAGGGGCTAGCGAACTACCTCCAAATGATGGATGCTTG
32095647 GTATTCGGAGTTTGTACGTGCGAACCCAAACAGTCCACCTCCCCCACCTCCTCCGATTCCTCAGT
66 GTATTCGGAGTTTGTACGTGCGAACCCAAACAGTCCACCTCCCCCACCTCCTCCGATTCCTCAGT
32095712 AT
131 AT
32095714 GC
1 GC
32095716 CCCGGTAGCT
Statistics
Matches: 127, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
130 90 0.71
133 1 0.01
134 36 0.28
ACGTcount: A:0.21, C:0.29, G:0.27, T:0.23
Consensus pattern (132 bp):
GCGAGCCCGTGAGTATGGGCCAAGGCGGAGGGGCTAGCGAACTACCTCCAAATGATGGATGCTTG
GTATTCGGAGTTTGTACGTGCGAACCCAAACAGTCCACCTCCCCCACCTCCTCCGATTCCTCAGT
AT
Found at i:32101261 original size:15 final size:15
Alignment explanation
Indices: 32101241--32101274 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32101231 GAATTTTCAT
32101241 TGAATTGATATAGTG
1 TGAATTGATATAGTG
* *
32101256 TGAATTGCTATATTG
1 TGAATTGATATAGTG
32101271 TGAA
1 TGAA
32101275 CTAAGAATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.03, G:0.24, T:0.41
Consensus pattern (15 bp):
TGAATTGATATAGTG
Found at i:32101533 original size:46 final size:47
Alignment explanation
Indices: 32101371--32101691 Score: 205
Period size: 46 Copynumber: 6.7 Consensus size: 47
32101361 TTATTTGTGT
* * * *
32101371 GCCAGTGTAAGACACGTCTTGGACAT-GCATCGGCCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGACCACATTATGAGA
* * * *
32101417 GCCAGTGCAAGAACATGTCTGGGACATGGCAAT--A--GCATTGATACAAGT
1 GCCAGTGTAAG-ACATGTCTGGGACATGGC-ATCGACCACATT-AT--GAGA
* *
32101465 GCTAGTGTAAGACATGTTTGGGACAT-GCATCGACCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGACCACATTATGAGA
* * * *
32101511 GCCAGTGTAAGACATGTCTGGGACAT-GCATC-AGCTA-A-GA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCGA-CCACATTATG-AGA
* * * * *
32101555 GCTAGTATAAGACCATGTCTGGGACATGGCATCAACACGCATATATACTAGA
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGAC-CACAT-TAT--GAGA
* * * *
32101607 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATGATGATA
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGACCAC-ATTATGAGA
* *
32101656 GCCAGTGTAAGACCATGTCTAGGACATAGCATCGAC
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCGAC
32101692 AACTTATCCC
Statistics
Matches: 215, Mismatches: 37, Indels: 43
0.73 0.13 0.15
Matches are distributed among these distances:
43 1 0.00
44 12 0.06
45 21 0.10
46 53 0.25
47 29 0.13
48 16 0.07
49 41 0.19
50 1 0.00
51 4 0.02
52 37 0.17
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCATCGACCACATTATGAGA
Found at i:32101681 original size:101 final size:96
Alignment explanation
Indices: 32101508--32101688 Score: 229
Period size: 101 Copynumber: 1.8 Consensus size: 96
32101498 CCACATTATG
* * *
32101508 AGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCTAAGAGTTGTGCTAGTATAAGACCATGT
1 AGAGCCAGTGTAAGACATGTCTGGGACATGCATCACCTAAGAGATGTGCCAGTATAAGACCATGT
* *
32101573 CTGGGACATGGCATCAACACGCATATATACT
66 CTAGGACATAGCATCAACACGCATATATACT
* * *
32101604 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-CGATGATGATAGCCAGTGTAAGA
1 AGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATC-ACCTAAGA-GATG-T-GCCAGTATAAGA
32101668 CCATGTCTAGGACATAGCATC
60 CCATGTCTAGGACATAGCATC
32101689 GACAACTTAT
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
96 14 0.20
97 14 0.20
98 7 0.10
99 6 0.08
100 1 0.01
101 29 0.41
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (96 bp):
AGAGCCAGTGTAAGACATGTCTGGGACATGCATCACCTAAGAGATGTGCCAGTATAAGACCATGT
CTAGGACATAGCATCAACACGCATATATACT
Found at i:32110785 original size:38 final size:38
Alignment explanation
Indices: 32110730--32111039 Score: 485
Period size: 38 Copynumber: 8.1 Consensus size: 38
32110720 GATGTTTATT
* *
32110730 CGGGTTAAATCCTGCAGGCTTCATGCTGGTATTATATC
1 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
*
32110768 CGGGTTAAATCCCGCAGGCTTCATGCTGGTATTATATC
1 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
* **
32110806 CGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAATATC
1 CGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTATATC
32110846 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
* *
32110884 CGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATATATC
1 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
32110922 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
*
32110960 CGGGTTAAATCCCGCAGGCTTCGTGTTGGTATTATATC
1 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
* * * *
32110998 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
32111036 CGGG
1 CGGG
32111040 CCTTCGTGCC
Statistics
Matches: 252, Mismatches: 18, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
38 213 0.85
39 10 0.04
40 29 0.12
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
Found at i:32111109 original size:43 final size:43
Alignment explanation
Indices: 32111032--32111113 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
32111022 GCTGGTATTA
* **
32111032 TATTCGGGCCTTCGTGCCTAGTAGGCTTTGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGTAGGCGTAATGCCGGTGATGTG
32111075 TATTCGGGCCTTCGTGCCTAGTAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGTAGGCGTAATGCCGGTGA
32111114 AATGATATGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.12, C:0.22, G:0.34, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGTAGGCGTAATGCCGGTGATGTG
Found at i:32115423 original size:20 final size:19
Alignment explanation
Indices: 32115398--32115438 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
32115388 CATGTGATTC
32115398 TGTAT-CTGTTATCTATTATT
1 TGTATCCTG-TATCTA-TATT
32115418 TGTATCCTGTATCTATATT
1 TGTATCCTGTATCTATATT
32115437 TG
1 TG
32115439 GTGTGAGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 11 0.55
21 3 0.15
ACGTcount: A:0.20, C:0.12, G:0.12, T:0.56
Consensus pattern (19 bp):
TGTATCCTGTATCTATATT
Found at i:32138737 original size:20 final size:21
Alignment explanation
Indices: 32138714--32138766 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 21
32138704 TTGAATTTTA
32138714 TGAAAAAGAAAACTTT-GAG-T
1 TGAAAAAGAAAA-TTTAGAGCT
*
32138734 TGAAAATG-AAATTTGAGAGCT
1 TGAAAAAGAAAATTT-AGAGCT
32138755 TGAAAAAGAAAA
1 TGAAAAAGAAAA
32138767 ATGAAATCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 3 0.11
19 3 0.11
20 10 0.37
21 8 0.30
22 3 0.11
ACGTcount: A:0.53, C:0.04, G:0.21, T:0.23
Consensus pattern (21 bp):
TGAAAAAGAAAATTTAGAGCT
Found at i:32140153 original size:20 final size:20
Alignment explanation
Indices: 32140128--32140168 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
32140118 CAGAATAAAG
32140128 TCCTATGCCACAGTCCATAC
1 TCCTATGCCACAGTCCATAC
32140148 TCCTATGCCACAGTCCATAC
1 TCCTATGCCACAGTCCATAC
32140168 T
1 T
32140169 TACACTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.39, G:0.10, T:0.27
Consensus pattern (20 bp):
TCCTATGCCACAGTCCATAC
Found at i:32140410 original size:49 final size:49
Alignment explanation
Indices: 32140355--32140453 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
32140345 TATAAACATA
*
32140355 TACATTATACAATCATAACAATCATATCAATTTCATATAACTCAATATT
1 TACATTATACAATCATAACAATCATATCAATTGCATATAACTCAATATT
32140404 TACATTATACAATCATAACAATCATATCAATTGCATATAACTCAATATT
1 TACATTATACAATCATAACAATCATATCAATTGCATATAACTCAATATT
32140453 T
1 T
32140454 CACTTTTATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.44, C:0.18, G:0.01, T:0.36
Consensus pattern (49 bp):
TACATTATACAATCATAACAATCATATCAATTGCATATAACTCAATATT
Found at i:32144047 original size:27 final size:27
Alignment explanation
Indices: 32144016--32144069 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
32144006 AAAATTTGGT
32144016 TATGAACTATCAAATTTAATTTAAATA
1 TATGAACTATCAAATTTAATTTAAATA
32144043 TATGAACTATCAAATTTAATTTAAATA
1 TATGAACTATCAAATTTAATTTAAATA
32144070 CCTTCTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (27 bp):
TATGAACTATCAAATTTAATTTAAATA
Found at i:32152546 original size:59 final size:59
Alignment explanation
Indices: 32152479--32152599 Score: 233
Period size: 59 Copynumber: 2.1 Consensus size: 59
32152469 TAACTGCTAT
*
32152479 ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACGGAAATGACCAATAGAG
1 ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACAGAAATGACCAATAGAG
32152538 ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACAGAAATGACCAATAGAG
1 ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACAGAAATGACCAATAGAG
32152597 ATT
1 ATT
32152600 CGGTACAGTG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (59 bp):
ATTATTGAAATGAAATGTGAATATTATTGAGTATGGTGCTACAGAAATGACCAATAGAG
Found at i:32154220 original size:28 final size:28
Alignment explanation
Indices: 32154184--32154239 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
32154174 CATGGGGAGA
32154184 CACACGGGCGTGTG-TCTAGGCCGTGTGT
1 CACACGGGCGTGTGATCT-GGCCGTGTGT
*
32154212 CACATGGGCGTGTGATCTGGCCGTGTGT
1 CACACGGGCGTGTGATCTGGCCGTGTGT
32154240 TCCCTGCACC
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 23 0.88
29 3 0.12
ACGTcount: A:0.11, C:0.23, G:0.39, T:0.27
Consensus pattern (28 bp):
CACACGGGCGTGTGATCTGGCCGTGTGT
Found at i:32172136 original size:328 final size:328
Alignment explanation
Indices: 32171539--32172834 Score: 2571
Period size: 328 Copynumber: 4.0 Consensus size: 328
32171529 TCATACGTAT
32171539 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
1 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
32171604 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
66 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
32171669 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
131 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
32171734 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
196 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
32171799 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
261 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
32171864 TTG
326 TTG
32171867 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
1 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
32171932 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
66 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
32171997 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
131 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
32172062 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
196 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
32172127 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
261 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
32172192 TTG
326 TTG
32172195 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
1 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
32172260 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGC-T-TATATATATATAT
66 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
32172323 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
131 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
32172388 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTC-TTTTTTGAACCTTTGATGGCCATTTT
196 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
32172452 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
261 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
32172517 TTG
326 TTG
32172520 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
1 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
32172585 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
66 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
32172650 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
131 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
32172715 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
196 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
32172780 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTA
261 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTA
32172835 AGTTATGTAT
Statistics
Matches: 965, Mismatches: 0, Indels: 6
0.99 0.00 0.01
Matches are distributed among these distances:
325 208 0.22
326 117 0.12
327 117 0.12
328 523 0.54
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (328 bp):
GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
TTG
Found at i:32172787 original size:653 final size:656
Alignment explanation
Indices: 32171539--32172834 Score: 2571
Period size: 653 Copynumber: 2.0 Consensus size: 656
32171529 TCATACGTAT
32171539 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
1 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
32171604 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
66 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
32171669 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
131 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
32171734 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
196 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
32171799 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
261 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
32171864 TTGGCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTAC
326 TTGGCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTAC
32171929 CTCATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATA
391 CTCATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATA
32171994 TATTAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTT
456 TATTAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTT
32172059 GTTGAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCAT
521 GTTGAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCAT
32172124 TTTACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAA
586 TTTACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAA
32172189 TTTTTG
651 TTTTTG
32172195 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
1 GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
32172260 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGC-T-TATATATATATAT
66 ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
32172323 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
131 TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
32172388 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTC-TTTTTTGAACCTTTGATGGCCATTTT
196 GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
32172452 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
261 ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
32172517 TTGGCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTAC
326 TTGGCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTAC
32172582 CTCATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATA
391 CTCATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATA
32172647 TATTAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTT
456 TATTAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTT
32172712 GTTGAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCAT
521 GTTGAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCAT
32172777 TTTACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTA
586 TTTACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTA
32172835 AGTTATGTAT
Statistics
Matches: 640, Mismatches: 0, Indels: 3
1.00 0.00 0.00
Matches are distributed among these distances:
653 409 0.64
654 116 0.18
655 1 0.00
656 114 0.18
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (656 bp):
GCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTACCTC
ATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATATAT
TAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTTGTT
GAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCATTTT
ACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAATTT
TTGGCATATACTTTGGGATAGTCTCTTAGCTTGAATTTTTCAATAAAGATAAAAATATTTTGTAC
CTCATTAATCTTTATTGAAAATAATTAGATTTTTTTCAAGAAAATGTGAGGCTTATATATATATA
TATTAATTTCTTGAAATTAAGGCCATAAGATCATTTGAACAACTTAGCTTTATCTCTTAAACTTT
GTTGAAAATGTTCAAGATGATATAAAGAAAATGCTCTTTTCTTTTTTTGAACCTTTGATGGCCAT
TTTACAAATATAAAGTTATTAAACTCTTCACTCAAGCTCCAATTATCCCATTATCTTAGCTTGAA
TTTTTG
Found at i:32173064 original size:20 final size:20
Alignment explanation
Indices: 32173039--32173079 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32173029 TTGATGCTCA
*
32173039 AAGTAAGCTACTAGTGAATT
1 AAGTAAGCCACTAGTGAATT
*
32173059 AAGTAAGCCACTTGTGAATT
1 AAGTAAGCCACTAGTGAATT
32173079 A
1 A
32173080 TGTTGAGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.12, G:0.20, T:0.29
Consensus pattern (20 bp):
AAGTAAGCCACTAGTGAATT
Found at i:32180693 original size:50 final size:50
Alignment explanation
Indices: 32180618--32180717 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
32180608 AAGGCTTTGT
*
32180618 ATGTAACCAATCCCAACTTGAATAGCTGTATTAATCACTTTGTAACAGCC
1 ATGTAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACAGCC
32180668 ATGTAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACAGCC
1 ATGTAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACAGCC
32180718 CTTGTACATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.34, C:0.25, G:0.12, T:0.29
Consensus pattern (50 bp):
ATGTAACCAATCCCAACTTGAATAGCTGCATTAATCACTTTGTAACAGCC
Found at i:32181918 original size:27 final size:27
Alignment explanation
Indices: 32181887--32181962 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
32181877 AATCTCATAT
* *
32181887 CTGTAGGCTAGTATTACTGAATTGCCC
1 CTGTAGGCTAGAATTACTGAAATGCCC
*
32181914 CTGTAGGGTAGAATTACTGAAATGCCC
1 CTGTAGGCTAGAATTACTGAAATGCCC
*
32181941 TTGTAGAG-TAGAATTACT-AAAT
1 CTGTAG-GCTAGAATTACTGAAAT
32181963 ACCCTTAGTT
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
26 4 0.09
27 39 0.89
28 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGTAGGCTAGAATTACTGAAATGCCC
Found at i:32181962 original size:26 final size:27
Alignment explanation
Indices: 32181899--32181968 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
32181889 GTAGGCTAGT
* * *
32181899 ATTACTGAATTGCCCCTGTAGGGTAGA
1 ATTACTGAAATGCCCTTGTAGAGTAGA
32181926 ATTACTGAAATGCCCTTGTAGAGTAGA
1 ATTACTGAAATGCCCTTGTAGAGTAGA
*
32181953 ATTACT-AAATACCCTT
1 ATTACTGAAATGCCCTT
32181969 AGTTTACAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 9 0.23
27 30 0.77
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (27 bp):
ATTACTGAAATGCCCTTGTAGAGTAGA
Found at i:32182035 original size:54 final size:54
Alignment explanation
Indices: 32181959--32182210 Score: 227
Period size: 54 Copynumber: 4.7 Consensus size: 54
32181949 TAGAATTACT
* ** * **
32181959 AAATACCCTTAGTTTACAAAATTACCAAAATACCC-CTGGTTTGTAAAATTACCA
1 AAATACCCTTAATTTGTAAAATTACCGAAATACCCTC-AATTTGTAAAATTACCA
** * * ** * **
32182013 AAATACCCTTGGTTTGTGAAATTATCGAAATACCCTCAACCTATAAAATTACTG
1 AAATACCCTTAATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
** *
32182067 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTTTAAAATTACCA
1 AAATACCCTTAATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
* * * * * *
32182121 AAATACCCCTAATTTGGAAAATTACCGAAATACCCTTAAATTGGAAAATTACAA
1 AAATACCCTTAATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
* ** **
32182175 AAATACCCCTAATTTACAAAATTATAGAAATACCCT
1 AAATACCCTTAATTTGTAAAATTACCGAAATACCCT
32182211 TGACTTTCAA
Statistics
Matches: 162, Mismatches: 35, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
54 161 0.99
55 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (54 bp):
AAATACCCTTAATTTGTAAAATTACCGAAATACCCTCAATTTGTAAAATTACCA
Found at i:32182116 original size:81 final size:82
Alignment explanation
Indices: 32181976--32182210 Score: 217
Period size: 81 Copynumber: 2.9 Consensus size: 82
32181966 CTTAGTTTAC
* * *** * *
32181976 AAAATTACCAAAATACCC-CTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTGAAATTATCG
1 AAAATTACCGAAATACCCTC-GATTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTATCG
*
32182040 AAATACCCTC-AACCTAT
65 AAATACCCTCTAACCTAG
* * * * *
32182057 AAAATTACTGAAATACCCTCGATTTGTAAAATTACCGAAATACCCTCAATTTTTAAAATTACCAA
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTATCGA
** *
32182122 AATACCC-CTAATTTGG
66 AATACCCTCTAACCTAG
** * * * * *
32182138 AAAATTACCGAAATACCCTTAAATTGGAAAATTACAAAAATACCC-CTAATTTACAAAATTATAG
1 AAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTC-AATTTATAAAATTATCG
32182202 AAATACCCT
65 AAATACCCT
32182211 TGACTTTCAA
Statistics
Matches: 123, Mismatches: 27, Indels: 7
0.78 0.17 0.04
Matches are distributed among these distances:
80 2 0.02
81 120 0.98
82 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.29
Consensus pattern (82 bp):
AAAATTACCGAAATACCCTCGATTTGTAAAATTACCAAAATACCCTCAATTTATAAAATTATCGA
AATACCCTCTAACCTAG
Found at i:32182273 original size:27 final size:27
Alignment explanation
Indices: 32181952--32182267 Score: 160
Period size: 27 Copynumber: 11.7 Consensus size: 27
32181942 TGTAGAGTAG
*
32181952 AATTACT-AAATACCCTTAGTTT-ACAA
1 AATTACTGAAATACCCTTAATTTGA-AA
** * ** *
32181978 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACTGAAATACCCTTAATTTGAAA
** ** **
32182005 AATTACCAAAATACCCTTGGTTTGTGA
1 AATTACTGAAATACCCTTAATTTGAAA
* **
32182032 AATTA-TCGAAATACCCTCAACCT-ATAA
1 AATTACT-GAAATACCCTTAATTTGA-AA
** *
32182059 AATTACTGAAATACCCTCGATTTGTAA
1 AATTACTGAAATACCCTTAATTTGAAA
* * **
32182086 AATTACCGAAATACCCTCAATTTTTAA
1 AATTACTGAAATACCCTTAATTTGAAA
** * *
32182113 AATTACCAAAATACCCCTAATTTGGAA
1 AATTACTGAAATACCCTTAATTTGAAA
* * *
32182140 AATTACCGAAATACCCTTAAATTGGAA
1 AATTACTGAAATACCCTTAATTTGAAA
** *
32182167 AATTACAAAAATACCCCTAATTT-ACAA
1 AATTACTGAAATACCCTTAATTTGA-AA
* *
32182194 AATTA-TAGAAATACCCTTGACTTTCAAAA
1 AATTACT-GAAATACCCTT-AATTT-GAAA
* * **
32182223 AATTA-TAGATATACCATTGGTTTGAAA
1 AATTACT-GAAATACCCTTAATTTGAAA
32182250 AATTACTGAAATACCCTT
1 AATTACTGAAATACCCTT
32182268 GGTTTGTAGA
Statistics
Matches: 232, Mismatches: 46, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
26 6 0.03
27 198 0.85
28 9 0.04
29 18 0.08
30 1 0.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AATTACTGAAATACCCTTAATTTGAAA
Found at i:32182348 original size:27 final size:28
Alignment explanation
Indices: 32182318--32182374 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 28
32182308 ACTAAAATAT
32182318 CCCTAGCA-GGTAAAAAGACCGTAA-TGC
1 CCCT-GCAGGGTAAAAAGACCGTAATTGC
* **
32182345 CCCTGTAGGGTAAAGTGACCGTAATTGC
1 CCCTGCAGGGTAAAAAGACCGTAATTGC
32182373 CC
1 CC
32182375 TATATGGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
26 2 0.08
27 18 0.72
28 5 0.20
ACGTcount: A:0.30, C:0.26, G:0.25, T:0.19
Consensus pattern (28 bp):
CCCTGCAGGGTAAAAAGACCGTAATTGC
Found at i:32182375 original size:27 final size:26
Alignment explanation
Indices: 32182334--32182389 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
32182324 CAGGTAAAAA
*
32182334 GACCGTAATGCCCCTGTAGGGTAAAGT
1 GACCGTAATGCCCCTATAGGGTAAA-T
*
32182361 GACCGTAATTG-CCCTATATGGTAAAT
1 GACCGTAA-TGCCCCTATAGGGTAAAT
32182387 GAC
1 GAC
32182390 GATTATGCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 4 0.15
27 20 0.77
28 2 0.08
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
GACCGTAATGCCCCTATAGGGTAAAT
Found at i:32182823 original size:27 final size:26
Alignment explanation
Indices: 32182764--32182824 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
32182754 TGCATTACAT
*
32182764 TGTACTGCATTGGGCTAGGCCTGCAC
1 TGTACTGCATAGGGCTAGGCCTGCAC
*
32182790 TGCTACTGTATAGGGCTTAGGCCTAG-AC
1 TG-TACTGCATAGGGC-TAGGCCT-GCAC
32182818 TGTACTG
1 TGTACTG
32182825 ATACTGAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
26 2 0.07
27 16 0.53
28 11 0.37
29 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.30, T:0.30
Consensus pattern (26 bp):
TGTACTGCATAGGGCTAGGCCTGCAC
Found at i:32182836 original size:33 final size:33
Alignment explanation
Indices: 32182788--32182863 Score: 107
Period size: 33 Copynumber: 2.3 Consensus size: 33
32182778 CTAGGCCTGC
* * *
32182788 ACTGCTACTGTATAGGGCTTAGGCCTAGACTGT
1 ACTGATACTGAATAGGGCTTAGGCCCAGACTGT
* *
32182821 ACTGATACTGAATAGGGCTTTGGCCCAGAGTGT
1 ACTGATACTGAATAGGGCTTAGGCCCAGACTGT
32182854 ACTGATACTG
1 ACTGATACTG
32182864 TGTTATTCAC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTTAGGCCCAGACTGT
Found at i:32183162 original size:17 final size:18
Alignment explanation
Indices: 32183122--32183171 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
32183112 AGTCTAGGAA
*
32183122 AACACGAGTTTTCAAAAT
1 AACACGAGTTTTCAAAAG
* *
32183140 AGCACGA-TTTTCTAAAG
1 AACACGAGTTTTCAAAAG
*
32183157 AACACGAGCTTTCAA
1 AACACGAGTTTTCAA
32183172 CAACAAAGTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.26
Consensus pattern (18 bp):
AACACGAGTTTTCAAAAG
Found at i:32185422 original size:35 final size:35
Alignment explanation
Indices: 32185356--32185441 Score: 86
Period size: 36 Copynumber: 2.4 Consensus size: 35
32185346 CTCACTCTCC
*
32185356 TTTTCAATTTTC-TTTTCTTTCTTACAATCTTTCACT
1 TTTTC-ATTTTCATTTTCTTTCATAC-ATCTTTCACT
**
32185392 TTTTCATTTTCATTTTCTTTCATATC-TCTTTTTCT
1 TTTTCATTTTCATTTTCTTTCATA-CATCTTTCACT
*
32185427 TCTTTCAATTTCATT
1 T-TTTCATTTTCATT
32185442 ATTAGATGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
35 14 0.33
36 28 0.65
37 1 0.02
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.64
Consensus pattern (35 bp):
TTTTCATTTTCATTTTCTTTCATACATCTTTCACT
Found at i:32189982 original size:19 final size:19
Alignment explanation
Indices: 32189958--32189996 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32189948 TTATTCCAGC
32189958 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
32189977 AACTTAATTAACTAAGATG
1 AACTTAATTAACTAAGATG
32189996 A
1 A
32189997 GTAATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.49, C:0.10, G:0.10, T:0.31
Consensus pattern (19 bp):
AACTTAATTAACTAAGATG
Found at i:32198285 original size:16 final size:15
Alignment explanation
Indices: 32198246--32198287 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
32198236 AGATGAGAAT
32198246 TATTAATATATAATTA
1 TATTAAT-TATAATTA
*
32198262 TATCAATTATAATATA
1 TATTAATTATAAT-TA
32198278 TATTAATTAT
1 TATTAATTAT
32198288 TATCAACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:32209339 original size:26 final size:25
Alignment explanation
Indices: 32209293--32209342 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
32209283 ATAATATTAA
*
32209293 AGAGAATATTTTTCATAATTAATTT
1 AGAGAATAATTTTCATAATTAATTT
* *
32209318 AGAGAATAAATTTTGATTATTAATT
1 AGAGAAT-AATTTTCATAATTAATT
32209343 AATTAAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.42, C:0.02, G:0.10, T:0.46
Consensus pattern (25 bp):
AGAGAATAATTTTCATAATTAATTT
Found at i:32210378 original size:15 final size:15
Alignment explanation
Indices: 32210358--32210387 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
32210348 ATCAAATTAA
32210358 ATTTATCAATATAAT
1 ATTTATCAATATAAT
32210373 ATTTATCAATATAAT
1 ATTTATCAATATAAT
32210388 TGTAATTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
ATTTATCAATATAAT
Found at i:32213042 original size:422 final size:422
Alignment explanation
Indices: 32212258--32213105 Score: 1615
Period size: 422 Copynumber: 2.0 Consensus size: 422
32212248 TGGAACTAAA
*
32212258 TATATATTTTTTACACCTGCAACATGATACTACTGTTAACAAATAGATAATTTTAAGCTTATTTT
1 TATATATATTTTACACCTGCAACATGATACTACTGTTAACAAATAGATAATTTTAAGCTTATTTT
32212323 TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTAAGGCACAAAATACAGTTCCAG
66 TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTAAGGCACAAAATACAGTTCCAG
* * *
32212388 GATGGGGGACAATTAACTTTGAGGTATGTACAAGGAATGCTGCAAACATAATAACCAAATAACAG
131 GATGGGGGACAATTAACTTTGAGATATGTACAAGGAATGCAGCAAACACAATAACCAAATAACAG
32212453 AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTACAACACGGAT
196 AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTACAACACGGAT
32212518 ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
261 ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
32212583 TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
326 TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
32212648 TATAGCCACAGTGGTATGACACAGATTACCTT
391 TATAGCCACAGTGGTATGACACAGATTACCTT
*
32212680 TATATATATTTTACACGTGCAACATGATACTACTGTTAACAAATAGATAATTTTAAGCTTATTTT
1 TATATATATTTTACACCTGCAACATGATACTACTGTTAACAAATAGATAATTTTAAGCTTATTTT
*
32212745 TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTGAGGCACAAAATACAGTTCCAG
66 TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTAAGGCACAAAATACAGTTCCAG
32212810 GATGGGGGACAATTAACTTTGAGATATGTACAAGGAATGCAGCAAACACAATAACCAAATAACAG
131 GATGGGGGACAATTAACTTTGAGATATGTACAAGGAATGCAGCAAACACAATAACCAAATAACAG
**
32212875 AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTATGACACGGAT
196 AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTACAACACGGAT
32212940 ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
261 ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
32213005 TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
326 TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
*
32213070 TATAGCCACAGTGGTATGACGCAGATTACCTT
391 TATAGCCACAGTGGTATGACACAGATTACCTT
32213102 TATA
1 TATA
32213106 AATACTCCCA
Statistics
Matches: 417, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
422 417 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (422 bp):
TATATATATTTTACACCTGCAACATGATACTACTGTTAACAAATAGATAATTTTAAGCTTATTTT
TGAGGATGCAGAATTGCTAGAGAGGGAAGAACATAGACAGTCTAAGGCACAAAATACAGTTCCAG
GATGGGGGACAATTAACTTTGAGATATGTACAAGGAATGCAGCAAACACAATAACCAAATAACAG
AATCTATAATTAACTCCTTGGGCTTTTTCTGGATATATCATAGGCTCTGAATTTACAACACGGAT
ACCACTAATAATATGTTCAACTCAATGTAACATGAAGTCCATCCAAACAATAAATAAAACAATAC
TTAGGGGACTATACCTCTTGTTGAAATTCCGATGGACCTTGCAAGCTATTAGAATGCAACATCTT
TATAGCCACAGTGGTATGACACAGATTACCTT
Found at i:32230139 original size:45 final size:45
Alignment explanation
Indices: 32230088--32230177 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
32230078 TGTTAGCGGA
32230088 ATATGATGGAATATTCCACTTAAAATGCTTAATGATGGATTAGGT
1 ATATGATGGAATATTCCACTTAAAATGCTTAATGATGGATTAGGT
32230133 ATATGATGGAATATTCCACTTAAAATGCTTAATGATGGATTAGGT
1 ATATGATGGAATATTCCACTTAAAATGCTTAATGATGGATTAGGT
32230178 TAATTAATTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.36
Consensus pattern (45 bp):
ATATGATGGAATATTCCACTTAAAATGCTTAATGATGGATTAGGT
Done.