Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 104 of 290
Found at i:32230818 original size:19 final size:20
Alignment explanation
Indices: 32230786--32230828 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
32230776 GATTCAGTTT
*
32230786 CAGATTTAGATTTAAATA-G
1 CAGATTCAGATTTAAATATG
* *
32230805 CAGATTCAGTTTTAGATATG
1 CAGATTCAGATTTAAATATG
32230825 CAGA
1 CAGA
32230829 ATCCTACCCC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (20 bp):
CAGATTCAGATTTAAATATG
Found at i:32231329 original size:21 final size:21
Alignment explanation
Indices: 32231305--32231345 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
32231295 GGCCCACATG
*
32231305 GCCTGGCCTAGAATCCACACA
1 GCCTGGCCCAGAATCCACACA
32231326 GCCTGGCCCAGAATCCACAC
1 GCCTGGCCCAGAATCCACAC
32231346 GCCCGTGTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.41, G:0.20, T:0.12
Consensus pattern (21 bp):
GCCTGGCCCAGAATCCACACA
Found at i:32231388 original size:17 final size:17
Alignment explanation
Indices: 32231366--32231405 Score: 80
Period size: 17 Copynumber: 2.4 Consensus size: 17
32231356 CATGCTTCTG
32231366 TGGGCCCACACGCTCAT
1 TGGGCCCACACGCTCAT
32231383 TGGGCCCACACGCTCAT
1 TGGGCCCACACGCTCAT
32231400 TGGGCC
1 TGGGCC
32231406 TAAGCCTGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.15, C:0.40, G:0.28, T:0.17
Consensus pattern (17 bp):
TGGGCCCACACGCTCAT
Found at i:32246221 original size:16 final size:18
Alignment explanation
Indices: 32246194--32246226 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
32246184 TATAATTGAG
32246194 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
32246211 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
32246227 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:32248406 original size:17 final size:17
Alignment explanation
Indices: 32248358--32248406 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
32248348 AATTTAATTC
*
32248358 ATTTGTTTATTTCTTGTT
1 ATTTATTTATTT-TTGTT
**
32248376 ATTTATTTCCTTTTGTT
1 ATTTATTTATTTTTGTT
32248393 ATTTATTTATTTTT
1 ATTTATTTATTTTT
32248407 ATTCCTTTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 17 0.65
18 9 0.35
ACGTcount: A:0.14, C:0.06, G:0.06, T:0.73
Consensus pattern (17 bp):
ATTTATTTATTTTTGTT
Found at i:32248777 original size:14 final size:14
Alignment explanation
Indices: 32248758--32248790 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
32248748 CTAGAGATAC
32248758 GATTTTTAATTTTT
1 GATTTTTAATTTTT
32248772 GATTTTTAATTTTT
1 GATTTTTAATTTTT
32248786 -ATTTT
1 GATTTT
32248791 CTTTCATGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.73
Consensus pattern (14 bp):
GATTTTTAATTTTT
Found at i:32251010 original size:24 final size:24
Alignment explanation
Indices: 32250982--32251033 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
32250972 TTTTTATGCA
32250982 TATAGCCTAA-TGGCTATTATGAAG
1 TATAG-CTAAGTGGCTATTATGAAG
*
32251006 TATAGGTAAGTGGCTATTATGAAG
1 TATAGCTAAGTGGCTATTATGAAG
32251030 TATA
1 TATA
32251034 TGTTGCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
23 3 0.12
24 23 0.88
ACGTcount: A:0.35, C:0.08, G:0.23, T:0.35
Consensus pattern (24 bp):
TATAGCTAAGTGGCTATTATGAAG
Found at i:32251848 original size:49 final size:49
Alignment explanation
Indices: 32251788--32252521 Score: 1248
Period size: 49 Copynumber: 15.3 Consensus size: 49
32251778 CAAGACAGTG
32251788 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32251837 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32251886 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32251933 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32251982 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32252029 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32252076 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32252125 TATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32252172 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32252221 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32252270 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32252317 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32252366 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32252413 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * *
32252460 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32252509 TA-A-ATGTGATAAG
1 TATATATGTGATAAG
32252522 TCCCGAAGGG
Statistics
Matches: 656, Mismatches: 19, Indels: 22
0.94 0.03 0.03
Matches are distributed among these distances:
47 327 0.50
48 1 0.00
49 328 0.50
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:32251955 original size:47 final size:47
Alignment explanation
Indices: 32251784--32252521 Score: 1233
Period size: 47 Copynumber: 15.4 Consensus size: 47
32251774 CAGCCAAGAC
32251784 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32251831 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32251880 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32251929 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32251976 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32252025 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32252072 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32252119 AGTGTATATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32252168 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32252215 AGTGTATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32252264 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32252313 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32252360 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
32252409 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
32252456 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
32252503 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
32252522 TCCCGAAGGG
Statistics
Matches: 661, Mismatches: 20, Indels: 20
0.94 0.03 0.03
Matches are distributed among these distances:
47 335 0.51
49 326 0.49
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:32251960 original size:96 final size:96
Alignment explanation
Indices: 32251788--32252521 Score: 1255
Period size: 96 Copynumber: 7.6 Consensus size: 96
32251778 CAAGACAGTG
32251788 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
*
32251853 CCTAATAGCCGATGTGATGAATGTGAAAGTGTA
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32251886 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
32251951 TAATGGCCGATGTGATGAATGTGAAAGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32251982 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
32252047 TAATGGCCGATGTGATGAATGTGAAAGTG--
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
*
32252076 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
*
32252141 CCTAATGGCTGATGTGATGAATGTGAAAGTG--
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32252172 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGG
*
32252237 CCTAATAGCCGATGTGATGAATGTGAAAGTGTA
64 CCTAATGGCCGATGTGATGAATGTGAAAGTGTA
32252270 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
32252335 TAATGGCCGATGTGATGAATGTGAAAGTGTA
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
32252366 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
32252431 TAATGGCCGATGTGATGAATGTGAAAGTG--
66 TAATGGCCGATGTGATGAATGTGAAAGTGTA
* * * * * * * *
32252460 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32252522 TCCCGAAGGG
Statistics
Matches: 617, Mismatches: 15, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
94 101 0.16
96 422 0.68
98 94 0.15
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
TAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:32256276 original size:75 final size:75
Alignment explanation
Indices: 32256135--32256301 Score: 212
Period size: 75 Copynumber: 2.2 Consensus size: 75
32256125 GGCTTTCCAA
* * *
32256135 ATAACTCACCACAAAGGCTTCCCAAACAATATACCACATAGGCTCTTCAGATAATTCACTAAAAA
1 ATAACTCACCACAAAGGCTTCCAAAACAATACACCACATAGGCTCTTCAGATAATTCACCAAAAA
32256200 GGTATTACAG
66 GGTATTACAG
* * * *
32256210 ATAATTCACCACAAAGGCTTCCAAAACAATACGCCACATATGCTCCTT-AGATAATTCACCACAA
1 ATAACTCACCACAAAGGCTTCCAAAACAATACACCACATAGGCT-CTTCAGATAATTCACCAAAA
*
32256274 AGGCT-TCACAG
65 AGG-TATTACAG
* *
32256285 ATAACTCGCCATAAAGG
1 ATAACTCACCACAAAGG
32256302 TTTGGTTTGG
Statistics
Matches: 79, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
75 75 0.95
76 4 0.05
ACGTcount: A:0.40, C:0.27, G:0.11, T:0.22
Consensus pattern (75 bp):
ATAACTCACCACAAAGGCTTCCAAAACAATACACCACATAGGCTCTTCAGATAATTCACCAAAAA
GGTATTACAG
Found at i:32256286 original size:25 final size:25
Alignment explanation
Indices: 32256135--32256288 Score: 82
Period size: 25 Copynumber: 6.2 Consensus size: 25
32256125 GGCTTTCCAA
* * *
32256135 ATAACTCACCACAAAGGCTTCCCAA
1 ATAATTCACCACAAAGGCTTCACAG
* * *
32256160 ACAATAT-ACCACATAGGC-TCTTCAG
1 ATAAT-TCACCACAAAGGCTTC-ACAG
* * *
32256185 ATAATTCACTAAAAAGG-TATTACAG
1 ATAATTCACCACAAAGGCT-TCACAG
*
32256210 ATAATTCACCACAAAGGCTTC-CAAA
1 ATAATTCACCACAAAGGCTTCAC-AG
* * * * * * **
32256235 ACAATACGCCACATATGCTCCTTAG
1 ATAATTCACCACAAAGGCTTCACAG
32256260 ATAATTCACCACAAAGGCTTCACAG
1 ATAATTCACCACAAAGGCTTCACAG
32256285 ATAA
1 ATAA
32256289 CTCGCCATAA
Statistics
Matches: 90, Mismatches: 31, Indels: 16
0.66 0.23 0.12
Matches are distributed among these distances:
24 4 0.04
25 83 0.92
26 3 0.03
ACGTcount: A:0.41, C:0.27, G:0.10, T:0.22
Consensus pattern (25 bp):
ATAATTCACCACAAAGGCTTCACAG
Found at i:32268236 original size:35 final size:35
Alignment explanation
Indices: 32268185--32268255 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
32268175 ATCTTGATTA
* *
32268185 AAACCATCTTTTTGAAATCGGGCTTTGAAATTTTT
1 AAACCATCTGTCTGAAATCGGGCTTTGAAATTTTT
* *
32268220 AAACCATCTGTCTGAAATCGTGCTTTGGAATTTTT
1 AAACCATCTGTCTGAAATCGGGCTTTGAAATTTTT
32268255 A
1 A
32268256 CTTTTATTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (35 bp):
AAACCATCTGTCTGAAATCGGGCTTTGAAATTTTT
Found at i:32276080 original size:137 final size:136
Alignment explanation
Indices: 32275780--32276050 Score: 413
Period size: 137 Copynumber: 2.0 Consensus size: 136
32275770 TGCCTATATT
* * * * *
32275780 TTAATTCAAGATATATCAATAAATATTATAGACTAATTGGAATTCATTCTAATAATGATATGATA
1 TTAACTCAAGATACA-CAATAAATATTATAGACTAATTAGAATTCATTCTAACAATGATATGAGA
* *
32275845 AGATCGCATGAGAATAAAACAAAATTTAGGGATTTTTTCTGATATAAAAGACCCCCCACACTTGA
65 AGATCGCATGAGAATAAAACAAAATTCAGGGATTTTTTCTGATATAAAAGACCCCCCACACTTAA
*
32275910 GTATGTT
130 GTATGTA
* *
32275917 TTAATTCAAGATATATCAATAAATATTATAGACTAATTAGAATTCATTCTAACAATGATATGAGA
1 TTAACTCAAGATACA-CAATAAATATTATAGACTAATTAGAATTCATTCTAACAATGATATGAGA
32275982 AGATCGCATGAGAATAAAACAAAATTCAGGGA-TTTTTCTGATATAAAAGA-CCCCCACACTTAA
65 AGATCGCATGAGAATAAAACAAAATTCAGGGATTTTTTCTGATATAAAAGACCCCCCACACTTAA
32276045 G-ATGTA
130 GTATGTA
32276051 CATTACCCTC
Statistics
Matches: 128, Mismatches: 6, Indels: 3
0.93 0.04 0.02
Matches are distributed among these distances:
134 4 0.03
135 13 0.10
136 18 0.14
137 93 0.73
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (136 bp):
TTAACTCAAGATACACAATAAATATTATAGACTAATTAGAATTCATTCTAACAATGATATGAGAA
GATCGCATGAGAATAAAACAAAATTCAGGGATTTTTTCTGATATAAAAGACCCCCCACACTTAAG
TATGTA
Found at i:32282671 original size:36 final size:36
Alignment explanation
Indices: 32282624--32282698 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
32282614 TGTGGCACAG
* *
32282624 TCTTGAACATGCCTTTGAGTTTGTCTTGAAATAGTT
1 TCTTGAACATGCCCTTGAGTATGTCTTGAAATAGTT
32282660 TCTTGAACATGCCCTTGAGTATGTCTTGAAATAGTT
1 TCTTGAACATGCCCTTGAGTATGTCTTGAAATAGTT
32282696 TCT
1 TCT
32282699 AACTTGTAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.43
Consensus pattern (36 bp):
TCTTGAACATGCCCTTGAGTATGTCTTGAAATAGTT
Found at i:32285497 original size:19 final size:20
Alignment explanation
Indices: 32285473--32285519 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
32285463 TATTAATTTA
*
32285473 TTTTCCTTTTCCTTTTC-C-T
1 TTTTCCTTTT-ATTTTCTCTT
32285492 TTTTCCTTTTATTTTCTCTT
1 TTTTCCTTTTATTTTCTCTT
32285512 TTTTCCTT
1 TTTTCCTT
32285520 CTTTTTTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 5 0.20
19 11 0.44
20 9 0.36
ACGTcount: A:0.02, C:0.26, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTTCCTTTTATTTTCTCTT
Found at i:32288983 original size:36 final size:36
Alignment explanation
Indices: 32288936--32289010 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
32288926 TTAACACATT
* *
32288936 AGAAACTATTTCAAGATAGACTCAAAGGCATGTTCA
1 AGAAACTATTTCAAGACAAACTCAAAGGCATGTTCA
32288972 AGAAACTATTTCAAGACAAACTCAAAGGCATGTTCA
1 AGAAACTATTTCAAGACAAACTCAAAGGCATGTTCA
32289008 AGA
1 AGA
32289011 CTGTGCCACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.44, C:0.17, G:0.16, T:0.23
Consensus pattern (36 bp):
AGAAACTATTTCAAGACAAACTCAAAGGCATGTTCA
Found at i:32294337 original size:46 final size:45
Alignment explanation
Indices: 32294284--32294459 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
32294274 TGGTTGAGCA
32294284 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
32294330 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
32294377 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*
32294423 CCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
32294460 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.62
47 31 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:32294440 original size:93 final size:93
Alignment explanation
Indices: 32294281--32294451 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
32294271 GGATGGTTGA
* * *
32294281 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32294346 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
*
32294374 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
32294439 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
32294452 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:32303365 original size:7 final size:7
Alignment explanation
Indices: 32303349--32303382 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
32303339 AACTTTAAAA
32303349 TTTTATT
1 TTTTATT
32303356 TTTT-TAT
1 TTTTAT-T
32303363 TTTTATT
1 TTTTATT
32303370 TTTTATT
1 TTTTATT
32303377 TTTTAT
1 TTTTAT
32303383 AAATTCAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 1 0.04
7 23 0.92
8 1 0.04
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTATT
Found at i:32303382 original size:14 final size:14
Alignment explanation
Indices: 32303349--32303379 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
32303339 AACTTTAAAA
32303349 TTTTATTTTTTTAT
1 TTTTATTTTTTTAT
32303363 TTTTA-TTTTTTAT
1 TTTTATTTTTTTAT
32303376 TTTT
1 TTTT
32303380 TATAAATTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTATTTTTTTAT
Found at i:32304968 original size:33 final size:33
Alignment explanation
Indices: 32304922--32305012 Score: 105
Period size: 34 Copynumber: 2.7 Consensus size: 33
32304912 AATAGAAATT
32304922 AATACGGTAGCAATAAGATGCTTATAACGAG-TC
1 AATACGGTAGCAATAAGATGCTTATAA-GAGATC
* * *
32304955 AATTCGGTAGCAATTATCG-TGCTTATAATAGATC
1 AATACGGTAGCAA-TA-AGATGCTTATAAGAGATC
*
32304989 AATACGGTAGCAATAAAATGCTTA
1 AATACGGTAGCAATAAGATGCTTA
32305013 AAACAAATCG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
33 22 0.46
34 25 0.52
35 1 0.02
ACGTcount: A:0.38, C:0.14, G:0.19, T:0.29
Consensus pattern (33 bp):
AATACGGTAGCAATAAGATGCTTATAAGAGATC
Found at i:32305032 original size:67 final size:67
Alignment explanation
Indices: 32304922--32305145 Score: 281
Period size: 67 Copynumber: 3.4 Consensus size: 67
32304912 AATAGAAATT
* * * * * * *
32304922 AATACGGTAGCAATAAGATGCTTATAACGAGTCAATTCGGTAGCAATTATCGTGCTTATAATAGA
1 AATACGGTAGCAATAAAATGCTTATAACAAGTCGATACAGTAGCATTTATCATGCTTATAATAGA
32304987 TC
66 TC
* * *
32304989 AATACGGTAGCAATAAAATGCTTAAAACAAATCGATACAGTAGCATTTGTCATGCTTATAATAGA
1 AATACGGTAGCAATAAAATGCTTATAACAAGTCGATACAGTAGCATTTATCATGCTTATAATAGA
*
32305054 TT
66 TC
* * * *
32305056 AGTACGGT-G-AATAACATGCTTATAACAAGTCGATACAGTAGCGTTTATCATGTTTATAATAGA
1 AATACGGTAGCAATAAAATGCTTATAACAAGTCGATACAGTAGCATTTATCATGCTTATAATAGA
32305119 TC
66 TC
*
32305121 AATACAGTAGCAATAAACATGCTTA
1 AATACGGTAGCAATAAA-ATGCTTA
32305146 GCATGTATTT
Statistics
Matches: 132, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
65 55 0.42
66 2 0.02
67 68 0.52
68 7 0.05
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (67 bp):
AATACGGTAGCAATAAAATGCTTATAACAAGTCGATACAGTAGCATTTATCATGCTTATAATAGA
TC
Found at i:32311268 original size:21 final size:21
Alignment explanation
Indices: 32311242--32311287 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
32311232 AATTGATAAC
32311242 GCATGTGATTATTTTGTAGAT
1 GCATGTGATTATTTTGTAGAT
32311263 GCATGTGATTATTTTGTAGAT
1 GCATGTGATTATTTTGTAGAT
32311284 GCAT
1 GCAT
32311288 CTACCAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.07, G:0.24, T:0.46
Consensus pattern (21 bp):
GCATGTGATTATTTTGTAGAT
Found at i:32315873 original size:17 final size:17
Alignment explanation
Indices: 32315851--32315887 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
32315841 TATTCAATTC
32315851 AATGATAGTAAATCAAG
1 AATGATAGTAAATCAAG
32315868 AATGATAGTAAATCAAG
1 AATGATAGTAAATCAAG
32315885 AAT
1 AAT
32315888 AAACAACATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.54, C:0.05, G:0.16, T:0.24
Consensus pattern (17 bp):
AATGATAGTAAATCAAG
Found at i:32317499 original size:30 final size:30
Alignment explanation
Indices: 32317463--32317525 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
32317453 CATAAAAGTG
32317463 TATAAATGATACTAAACATAACTTATACCT
1 TATAAATGATACTAAACATAACTTATACCT
*
32317493 TATAAATGATACTAAACATAATTTATACCT
1 TATAAATGATACTAAACATAACTTATACCT
32317523 TAT
1 TAT
32317526 GAAAGAGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.46, C:0.14, G:0.03, T:0.37
Consensus pattern (30 bp):
TATAAATGATACTAAACATAACTTATACCT
Found at i:32318190 original size:21 final size:19
Alignment explanation
Indices: 32318157--32318195 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 19
32318147 TGAAAAATAT
32318157 TAAATATTTTTTAAATAAA
1 TAAATATTTTTTAAATAAA
32318176 TAAATATCATTTTTAAATAA
1 TAAATAT--TTTTTAAATAA
32318196 TATTGTAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (19 bp):
TAAATATTTTTTAAATAAA
Found at i:32325723 original size:50 final size:50
Alignment explanation
Indices: 32325648--32325816 Score: 250
Period size: 50 Copynumber: 3.4 Consensus size: 50
32325638 CCATGGCAAT
*
32325648 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
*
32325698 AAGTGATAAGT-AGTAGCTTCAGCTACACTTATCTGATCAAGGACAAGTGA
1 AAGTGATAAGTGA-TAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
* * *
32325748 AAGTGATAAGTGATAGCTTCTGCTACACCTATCTGATCAGGGACAAATGA
1 AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
* *
32325798 CAAGTGAAAAGTGGTAGCT
1 -AAGTGATAAGTGATAGCT
32325817 CCGGCTACCT
Statistics
Matches: 108, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
49 1 0.01
50 90 0.83
51 17 0.16
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.25
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGGACAAATGA
Found at i:32325838 original size:31 final size:31
Alignment explanation
Indices: 32325800--32326072 Score: 438
Period size: 31 Copynumber: 8.8 Consensus size: 31
32325790 ACAAATGACA
32325800 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
32325831 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
32325862 AATGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
32325893 AATGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* * *
32325924 ACTAAAAATTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
32325955 AGTGAAAAATGGTAGCTCCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
32325986 AGTGAAAATTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
*
32326017 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
* *
32326048 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTCCGGCTAC
32326073 AAGTGACAAG
Statistics
Matches: 227, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 227 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
Found at i:32326160 original size:47 final size:46
Alignment explanation
Indices: 32326090--32326255 Score: 160
Period size: 47 Copynumber: 3.7 Consensus size: 46
32326080 AAGTGATTTC
* * * *
32326090 CGTATAAGACCATATCTGAGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* *
32326136 CTGTATAAGACCATATTTGGGATATGGCATCAGTGAGATATATGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * * *
32326183 CGTGTAAGACCATAGCTGGGCTATGGCATCA---ATATATA-AATA
1 CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
* * * *
32326225 TGTGTAAGACCATAGCTGGGCTATGGCATCA
1 CGTATAAGACCATATCTGGGATATGGCATCA
32326256 TTATGTGAAG
Statistics
Matches: 105, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
42 32 0.30
43 6 0.06
46 27 0.26
47 40 0.38
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATATGATA
Found at i:32326242 original size:42 final size:42
Alignment explanation
Indices: 32326184--32326296 Score: 163
Period size: 42 Copynumber: 2.7 Consensus size: 42
32326174 TATATGATTC
*
32326184 GTGTAAGACCATAGCTGGGCTATGGCATCAATATATAAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCAATATATAAAGAT
* * *
32326226 GTGTAAGACCATAGCTGGGCTATGGCATCATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCAATATATAAAGAT
* **
32326268 GTGTAAGACCATAGTTGAACTATGGCATC
1 GTGTAAGACCATAGCTGGGCTATGGCATC
32326297 GAGAAAACGA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCAATATATAAAGAT
Found at i:32328521 original size:47 final size:47
Alignment explanation
Indices: 32328446--32328540 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
32328436 AATGTTAGCA
*
32328446 TAACTAATAGAATCTGTTAGTTGCTATTCTGTTAATAACAGATTGTC
1 TAACTAATAGAATCTGTTAGTAGCTATTCTGTTAATAACAGATTGTC
*
32328493 TAACTAATAGAATCTGTTAGTAGTTATTCTGTTAATAACAGATTGTC
1 TAACTAATAGAATCTGTTAGTAGCTATTCTGTTAATAACAGATTGTC
32328540 T
1 T
32328541 GTTAGTCGTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.41
Consensus pattern (47 bp):
TAACTAATAGAATCTGTTAGTAGCTATTCTGTTAATAACAGATTGTC
Found at i:32335607 original size:18 final size:17
Alignment explanation
Indices: 32335586--32335628 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
32335576 ATTTATTTAT
32335586 ATTATAAATTTTAAAAAA
1 ATTATAAATTTT-AAAAA
** *
32335604 ATTATGTATTTTATAAA
1 ATTATAAATTTTAAAAA
32335621 ATTATAAA
1 ATTATAAA
32335629 AAATAATTTA
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
ATTATAAATTTTAAAAA
Found at i:32335617 original size:27 final size:28
Alignment explanation
Indices: 32335578--32335631 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
32335568 AGCTAAGTAT
* *
32335578 TTATTTATATTAT-AAATTTTAAAAAAA
1 TTATGTATATTATAAAATTATAAAAAAA
*
32335605 TTATGTATTTTATAAAATTATAAAAAA
1 TTATGTATATTATAAAATTATAAAAAA
32335632 TAATTTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (28 bp):
TTATGTATATTATAAAATTATAAAAAAA
Found at i:32335868 original size:16 final size:16
Alignment explanation
Indices: 32335847--32335880 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
32335837 ATTGGAAAGT
32335847 TTTTATAAATGTTATA
1 TTTTATAAATGTTATA
*
32335863 TTTTATAAATTTTATA
1 TTTTATAAATGTTATA
32335879 TT
1 TT
32335881 ATTTTTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (16 bp):
TTTTATAAATGTTATA
Found at i:32340605 original size:40 final size:40
Alignment explanation
Indices: 32340543--32340655 Score: 156
Period size: 40 Copynumber: 2.8 Consensus size: 40
32340533 TTAGCGGCGT
*
32340543 TAGATCAAGCATTAGTGGCGCTTTTTGAAAAATGCCGCTA
1 TAGATCAAGCATTAGCGGCGCTTTTTGAAAAATGCCGCTA
* * *
32340583 TAGATCGAGCATTAGCGACGCTTTTTAAAAAATGCCGCTA
1 TAGATCAAGCATTAGCGGCGCTTTTTGAAAAATGCCGCTA
* *
32340623 TA-AGTCAACCACTAGCGGCGCTTTTTGAAAAAT
1 TAGA-TCAAGCATTAGCGGCGCTTTTTGAAAAAT
32340656 ACCACAAAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.02
40 62 0.98
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28
Consensus pattern (40 bp):
TAGATCAAGCATTAGCGGCGCTTTTTGAAAAATGCCGCTA
Found at i:32340752 original size:40 final size:40
Alignment explanation
Indices: 32340708--32340842 Score: 182
Period size: 40 Copynumber: 3.4 Consensus size: 40
32340698 ATTAGCGACA
* * * * *
32340708 CTTTTTGAAAAACGCCGCTACAGATTGAGCATTAACGATG
1 CTTTTTGAAAAACGCCGCTATAGGTCGAGCATTAGCGGTG
* *
32340748 CTTTTTGAAAAACGTCGCTATAGGTCGAGCATTAGCGGCG
1 CTTTTTGAAAAACGCCGCTATAGGTCGAGCATTAGCGGTG
* *
32340788 CTTTTTG-AAAACGCCGCTATAGGTCAACCATTAGCGGTG
1 CTTTTTGAAAAACGCCGCTATAGGTCGAGCATTAGCGGTG
32340827 CTTTTTGAAAAACGCC
1 CTTTTTGAAAAACGCC
32340843 ACAAAAAATT
Statistics
Matches: 83, Mismatches: 11, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
39 35 0.42
40 48 0.58
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (40 bp):
CTTTTTGAAAAACGCCGCTATAGGTCGAGCATTAGCGGTG
Found at i:32340916 original size:175 final size:182
Alignment explanation
Indices: 32340561--32340936 Score: 505
Period size: 175 Copynumber: 2.1 Consensus size: 182
32340551 GCATTAGTGG
* *
32340561 CGCTTTTTGAAAAATGCCGCTATAGATCGAGCATTAGCGACGCTTTTTAAAAAATGCCGCTATAA
1 CGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACGCTTTTTAAAAAACGCCGCTATAA
*
32340626 GTCAACCACTAGCGGCGCTTTTTGAAAAATACCACAAAAAAATTAAGCACAATGTTGTCGAGCTT
66 GTCAACCACTAGCGGCGCTTTTTGAAAAACACCACAAAAAAATTAAG-ACAA--TTGTCGAGCTT
* *
32340691 TAGTGGCATTAGCGACACTTTTTGAAAAACGCCGCTACAGATTGAGCATTAACGA
128 TAGTGGCATTAGCGACACTTTTTAAAAAACGCCGCTACAGATCGAGCATTAACGA
* * * * * *
32340746 TGCTTTTTGAAAAACGTCGCTATAGGTCGAGCATTAGCGGCGCTTTTT-GAAAACGCCGCTATAG
1 CGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACGCTTTTTAAAAAACGCCGCTATAA
* * *
32340810 GTCAACCATTAGCGGTGCTTTTTGAAAAACGCCAC-AAAAAATTAAG-C-A-T-T-GAGCTTTAG
66 GTCAACCACTAGCGGCGCTTTTTGAAAAACACCACAAAAAAATTAAGACAATTGTCGAGCTTTAG
* * * * *
32340869 TGGCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGAGCATTAGCGG
131 TGGCATTAGCGACACTTTTTAAAAAACGCCGCTACAGATCGAGCATTAACGA
32340921 CGCTTTTTGAAAAACG
1 CGCTTTTTGAAAAACG
32340937 ATGCAAAAAA
Statistics
Matches: 171, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
175 69 0.40
176 1 0.01
177 1 0.01
180 1 0.01
181 1 0.01
183 11 0.06
184 44 0.26
185 43 0.25
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (182 bp):
CGCTTTTTGAAAAACGCCGCTATAGATCGAGCATTAGCGACGCTTTTTAAAAAACGCCGCTATAA
GTCAACCACTAGCGGCGCTTTTTGAAAAACACCACAAAAAAATTAAGACAATTGTCGAGCTTTAG
TGGCATTAGCGACACTTTTTAAAAAACGCCGCTACAGATCGAGCATTAACGA
Found at i:32340944 original size:96 final size:95
Alignment explanation
Indices: 32340776--32340948 Score: 265
Period size: 96 Copynumber: 1.8 Consensus size: 95
32340766 TATAGGTCGA
* * *
32340776 GCATTAGCGGCGCTTTTTGAAAACGCCGCTATAGGTCAACCATTAGCGGTGCTTTTTGAAAAACG
1 GCATTAGCGGCGCTTTTTAAAAACGCCGCTATAGATCAACCATTAGCGGCGCTTTTTGAAAAACG
*
32340841 CCACAAAAAATTAAGCATTGAGCTTTAGTG
66 ACACAAAAAATTAAGCATTGAGCTTTAGTG
* *
32340871 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAAC
1 GCATTAGCGGCGCTTTTT-AAAAACGCCGCTATAGATCAACCATTAGCGGCGCTTTTTGAAAAAC
**
32340936 GATGCAAAAAATT
65 GACACAAAAAATT
32340949 CAATTAGACG
Statistics
Matches: 69, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
95 18 0.26
96 51 0.74
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (95 bp):
GCATTAGCGGCGCTTTTTAAAAACGCCGCTATAGATCAACCATTAGCGGCGCTTTTTGAAAAACG
ACACAAAAAATTAAGCATTGAGCTTTAGTG
Found at i:32341331 original size:7 final size:7
Alignment explanation
Indices: 32341315--32341428 Score: 75
Period size: 7 Copynumber: 16.0 Consensus size: 7
32341305 TATCATTTTA
*
32341315 GTTTAAG
1 GTTTATG
32341322 GTTTATG
1 GTTTATG
*
32341329 GTTTAGG
1 GTTTATG
* *
32341336 GTATATT
1 GTTTATG
*
32341343 GTTTAGG
1 GTTTATG
*
32341350 GTTTAAG
1 GTTTATG
32341357 GTTTATG
1 GTTTATG
** *
32341364 AATTACTA
1 GTTTA-TG
* *
32341372 TTTTAAG
1 GTTTATG
32341379 GTTTATG
1 GTTTATG
*
32341386 GATTATGG
1 GTTTAT-G
*
32341394 GTTTAGG
1 GTTTATG
*
32341401 GATTATG
1 GTTTATG
*
32341408 ATTTATG
1 GTTTATG
32341415 GTTTATG
1 GTTTATG
32341422 GTTTATG
1 GTTTATG
32341429 TAACGCCCCC
Statistics
Matches: 78, Mismatches: 27, Indels: 4
0.72 0.25 0.04
Matches are distributed among these distances:
7 69 0.88
8 9 0.12
ACGTcount: A:0.23, C:0.01, G:0.27, T:0.49
Consensus pattern (7 bp):
GTTTATG
Found at i:32342809 original size:46 final size:46
Alignment explanation
Indices: 32342742--32342919 Score: 205
Period size: 46 Copynumber: 3.7 Consensus size: 46
32342732 AACCCGCCCC
*
32342742 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
32342788 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATC-CA
* * * * *
32342839 CGAACTCGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCA
1 -TAAGT-GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
32342887 TAAGTGAACTCGGACTCAACTCCACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
32342920 ATGCTCAACC
Statistics
Matches: 111, Mismatches: 12, Indels: 18
0.79 0.09 0.13
Matches are distributed among these distances:
46 58 0.52
47 3 0.03
48 5 0.05
49 5 0.05
50 5 0.05
51 5 0.05
52 3 0.03
53 27 0.24
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:32344716 original size:34 final size:35
Alignment explanation
Indices: 32344674--32344750 Score: 138
Period size: 35 Copynumber: 2.2 Consensus size: 35
32344664 ATTATAACAA
32344674 TTTTTTTTCAAATTTTGAAA-TTTTTTGTTTTTGT
1 TTTTTTTTCAAATTTTGAAATTTTTTTGTTTTTGT
*
32344708 TTTTTTTTCATATTTTGAAATTTTTTTGTTTTTGT
1 TTTTTTTTCAAATTTTGAAATTTTTTTGTTTTTGT
32344743 TTTTTTTT
1 TTTTTTTT
32344751 TTTGAGAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
34 19 0.46
35 22 0.54
ACGTcount: A:0.14, C:0.03, G:0.08, T:0.75
Consensus pattern (35 bp):
TTTTTTTTCAAATTTTGAAATTTTTTTGTTTTTGT
Found at i:32345619 original size:24 final size:24
Alignment explanation
Indices: 32345592--32345642 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
32345582 TTGATTATGA
32345592 AGTCTTCCTATTTCACAAATACGT
1 AGTCTTCCTATTTCACAAATACGT
*
32345616 AGTCTTCCTATTTCACAGATACGT
1 AGTCTTCCTATTTCACAAATACGT
32345640 AGT
1 AGT
32345643 TTTTCCTCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.37
Consensus pattern (24 bp):
AGTCTTCCTATTTCACAAATACGT
Found at i:32347007 original size:28 final size:28
Alignment explanation
Indices: 32346967--32347023 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
32346957 TCAGTTGAAC
32346967 TACGAACTCCGAGCATTCTGGTGATCAT
1 TACGAACTCCGAGCATTCTGGTGATCAT
32346995 TACGAACTCCGAGCATTCTGGTGATCAT
1 TACGAACTCCGAGCATTCTGGTGATCAT
32347023 T
1 T
32347024 CTTTTTTCCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (28 bp):
TACGAACTCCGAGCATTCTGGTGATCAT
Found at i:32351078 original size:19 final size:19
Alignment explanation
Indices: 32351054--32351092 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32351044 TTTCCCCTAA
32351054 AAAATTTCCCCAAATACCT
1 AAAATTTCCCCAAATACCT
*
32351073 AAAATTTCCCCAAATCCCT
1 AAAATTTCCCCAAATACCT
32351092 A
1 A
32351093 GTTTTTTACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.41, C:0.33, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAATTTCCCCAAATACCT
Found at i:32353457 original size:22 final size:22
Alignment explanation
Indices: 32353432--32353474 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32353422 ACTATATGTG
32353432 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32353454 TAGGAATATTTTGTAGATATT
1 TAGGAATATTCTGTAAATATT
32353475 CTTTTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32356454 original size:22 final size:22
Alignment explanation
Indices: 32356426--32356468 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
32356416 AGGGGGAGTG
32356426 TAGGAATATTCTGTAAATATTT
1 TAGGAATATTCTGTAAATATTT
* *
32356448 TAGGAATATTTTGTAGATATT
1 TAGGAATATTCTGTAAATATT
32356469 CTTTTTATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (22 bp):
TAGGAATATTCTGTAAATATTT
Found at i:32358846 original size:43 final size:42
Alignment explanation
Indices: 32358711--32358851 Score: 167
Period size: 42 Copynumber: 3.4 Consensus size: 42
32358701 GTCTTTAGTT
* * **
32358711 GCGTTTTTGGAGAAAGCGTCACTAAAGGTAATGTCTTTAGTA
1 GCGTTTTTGGAGAAAGCGCCGCTAAAGGTAATGTCTTTAACA
* * * *
32358753 GCATTTTTGGAGAAAGTGCCGTTAAAGGTCATGTCTTTAACA
1 GCGTTTTTGGAGAAAGCGCCGCTAAAGGTAATGTCTTTAACA
* * *
32358795 GCGTTTTTGGGGAAAGCGCCGCAAAAGGTTATGTTCTTTAACA
1 GCGTTTTTGGAGAAAGCGCCGCTAAAGGTAATG-TCTTTAACA
32358838 GCGTTTTTGG-GAAA
1 GCGTTTTTGGAGAAA
32358852 AGTATCGTTA
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 65 0.77
43 19 0.23
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (42 bp):
GCGTTTTTGGAGAAAGCGCCGCTAAAGGTAATGTCTTTAACA
Found at i:32358865 original size:43 final size:42
Alignment explanation
Indices: 32358733--32358877 Score: 157
Period size: 43 Copynumber: 3.4 Consensus size: 42
32358723 AAAGCGTCAC
* ** *
32358733 TAAAGGTAATGTCTTTAGTAGCATTTTT-GGAGAAAGTGCCGT
1 TAAAGGTCATGTCTTTAACAGCGTTTTTGGGA-AAAGTGCCGT
* * *
32358775 TAAAGGTCATGTCTTTAACAGCGTTTTTGGGGAAAGCGCCGC
1 TAAAGGTCATGTCTTTAACAGCGTTTTTGGGAAAAGTGCCGT
* * **
32358817 AAAAGGTTATGTTCTTTAACAGCGTTTTTGGGAAAAGTATCGT
1 TAAAGGTCATG-TCTTTAACAGCGTTTTTGGGAAAAGTGCCGT
32358860 TAAAGGTCATGTTCTTTA
1 TAAAGGTCATG-TCTTTA
32358878 GCTGCGTTAT
Statistics
Matches: 85, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
42 41 0.48
43 44 0.52
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (42 bp):
TAAAGGTCATGTCTTTAACAGCGTTTTTGGGAAAAGTGCCGT
Found at i:32358868 original size:85 final size:85
Alignment explanation
Indices: 32358711--32358877 Score: 212
Period size: 85 Copynumber: 2.0 Consensus size: 85
32358701 GTCTTTAGTT
* * ** *
32358711 GCGTTTTTGGAGAAAGCGTCACTAAAGGTAATGTCTTTAGTAGCATTTTTGGAGAAAGTGCCGTT
1 GCGTTTTTGGAGAAAGCGCCACAAAAGGTAATGTCTTTAACAGCATTTTTGGAGAAAGTACCGTT
32358776 AAAGGTCATG-TCTTTAACA
66 AAAGGTCATGTTCTTTAACA
* * * * *
32358795 GCGTTTTTGGGGAAAGCGCCGCAAAAGGTTATGTTCTTTAACAGCGTTTTTGG-GAAAAGTATCG
1 GCGTTTTTGGAGAAAGCGCCACAAAAGGTAATG-TCTTTAACAGCATTTTTGGAG-AAAGTACCG
32358859 TTAAAGGTCATGTTCTTTA
64 TTAAAGGTCATGTTCTTTA
32358878 GCTGCGTTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
84 29 0.41
85 35 0.50
86 6 0.09
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.34
Consensus pattern (85 bp):
GCGTTTTTGGAGAAAGCGCCACAAAAGGTAATGTCTTTAACAGCATTTTTGGAGAAAGTACCGTT
AAAGGTCATGTTCTTTAACA
Found at i:32358885 original size:43 final size:42
Alignment explanation
Indices: 32358701--32358885 Score: 158
Period size: 42 Copynumber: 4.4 Consensus size: 42
32358691 ATTTGATATG
* * * *
32358701 GTCTTTAGTTGCGTTTTTGGAGAAAGCGTCACTAAAGGTAAT
1 GTCTTTAGCTGCGTTTTTGGAGAAAGCGCCGCTAAAGGTCAT
* * *
32358743 GTCTTTAG-TAGCATTTTTGGAGAAAGTGCCGTTAAAGGTCAT
1 GTCTTTAGCT-GCGTTTTTGGAGAAAGCGCCGCTAAAGGTCAT
* * * * *
32358785 GTCTTTAACAGCGTTTTTGGGGAAAGCGCCGCAAAAGGTTAT
1 GTCTTTAGCTGCGTTTTTGGAGAAAGCGCCGCTAAAGGTCAT
* * *** *
32358827 GTTCTTTAACAGCGTTTTTGG-GAAAAGTATCGTTAAAGGTCAT
1 G-TCTTTAGCTGCGTTTTTGGAG-AAAGCGCCGCTAAAGGTCAT
32358870 GTTCTTTAGCTGCGTT
1 G-TCTTTAGCTGCGTT
32358886 ATCTATAGTG
Statistics
Matches: 117, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.01
42 69 0.59
43 47 0.40
ACGTcount: A:0.25, C:0.14, G:0.26, T:0.36
Consensus pattern (42 bp):
GTCTTTAGCTGCGTTTTTGGAGAAAGCGCCGCTAAAGGTCAT
Found at i:32362098 original size:17 final size:17
Alignment explanation
Indices: 32362076--32362111 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
32362066 TTGTTAGCTA
*
32362076 ATATATGCTAAATGTTG
1 ATATATGCAAAATGTTG
*
32362093 ATATATTCAAAATGTTG
1 ATATATGCAAAATGTTG
32362110 AT
1 AT
32362112 TTATAATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.42
Consensus pattern (17 bp):
ATATATGCAAAATGTTG
Found at i:32366238 original size:43 final size:42
Alignment explanation
Indices: 32366190--32366307 Score: 128
Period size: 43 Copynumber: 2.8 Consensus size: 42
32366180 AGCTCGTACA
* * *
32366190 ATGCCAATATCCCAAACGTGGTCTTACATGTAATCGAATATCG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATA-CG
* * * *
32366233 ATGCCACTGTCCCAAACAAGGTCTTAAATGAAATCAAATACG
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATACG
* * * *
32366275 ATGCCGATGTCCTAGACATGGTCTTACACGTAA
1 ATGCCAATGTCCCAAACATGGTCTTACATGTAA
32366308 ACCATAAGTC
Statistics
Matches: 60, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
42 27 0.45
43 33 0.55
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAAACATGGTCTTACATGTAATCAAATACG
Found at i:32368124 original size:34 final size:34
Alignment explanation
Indices: 32368081--32368150 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
32368071 TGAATAATCC
32368081 GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
1 GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
32368115 GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
1 GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
32368149 GT
1 GT
32368151 CTATCAACCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (34 bp):
GTGCATACTGGAATGAAATAAGCCGATTTAGTCA
Found at i:32373553 original size:42 final size:43
Alignment explanation
Indices: 32373463--32373557 Score: 106
Period size: 42 Copynumber: 2.2 Consensus size: 43
32373453 ATCTTTAAGG
* * *
32373463 TGGTCCTACATGTAATCAAATATCGATGCCACCGTCCCAGACA
1 TGGTCTTACATGAAATCAAATATCGATGCCAACGTCCCAGACA
* *
32373506 GGGTCTTACATGAAATCAAATA-CGATG-CAGATGTCCCA-AGCA
1 TGGTCTTACATGAAATCAAATATCGATGCCA-ACGTCCCAGA-CA
32373548 TGGTCTTACA
1 TGGTCTTACA
32373558 CGTAAACCTA
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
41 3 0.07
42 22 0.50
43 19 0.43
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
TGGTCTTACATGAAATCAAATATCGATGCCAACGTCCCAGACA
Found at i:32377518 original size:19 final size:20
Alignment explanation
Indices: 32377474--32377518 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
32377464 CAATTGGATG
32377474 AAGG-AAAAGAAAAGAAAGA
1 AAGGAAAAAGAAAAGAAAGA
*
32377493 AATGAAAAAG-AAAGAATA-A
1 AAGGAAAAAGAAAAGAA-AGA
32377512 AAGGAAA
1 AAGGAAA
32377519 GAAATGTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.04
Consensus pattern (20 bp):
AAGGAAAAAGAAAAGAAAGA
Found at i:32379256 original size:26 final size:26
Alignment explanation
Indices: 32379195--32379256 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
32379185 CCATATGTTT
* *
32379195 TTAAAATTTAAGGAAATAATAATAGA
1 TTAAAAATTCAGGAAATAATAATAGA
* *
32379221 CTAAAAATTCAGGAAATAATGATAGA
1 TTAAAAATTCAGGAAATAATAATAGA
32379247 TTAAAAATTC
1 TTAAAAATTC
32379257 TATTACACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.55, C:0.05, G:0.11, T:0.29
Consensus pattern (26 bp):
TTAAAAATTCAGGAAATAATAATAGA
Found at i:32383456 original size:16 final size:17
Alignment explanation
Indices: 32383435--32383470 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
32383425 TCTCGTTACC
*
32383435 AAAAAT-TTTAATTTTT
1 AAAAATATTAAATTTTT
32383451 AAAAATATTAAATTTTT
1 AAAAATATTAAATTTTT
32383468 AAA
1 AAA
32383471 TTTCAAACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAAATATTAAATTTTT
Found at i:32385278 original size:19 final size:20
Alignment explanation
Indices: 32385256--32385294 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32385246 TATTTCATGA
32385256 AAAATTA-AAAAAAAAACAT
1 AAAATTACAAAAAAAAACAT
*
32385275 AAAATTACTAAAAAAAACAT
1 AAAATTACAAAAAAAAACAT
32385295 GTCGAGAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (20 bp):
AAAATTACAAAAAAAAACAT
Found at i:32390202 original size:6 final size:6
Alignment explanation
Indices: 32390191--32390220 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
32390181 AATAAAAACC
32390191 ACCAAA ACCAAA ACCAAA ACCAAA ACCAAA
1 ACCAAA ACCAAA ACCAAA ACCAAA ACCAAA
32390221 TCAGACCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (6 bp):
ACCAAA
Found at i:32391320 original size:3 final size:3
Alignment explanation
Indices: 32391312--32391409 Score: 99
Period size: 3 Copynumber: 32.7 Consensus size: 3
32391302 TAATTTTAAC
* *
32391312 ATT ATT ATT ATT ATT ATT ACT ATT ATT ATTT ATT ATC ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT
* * * * * * *
32391358 ATT ACT ATT ACT ACT ATT -GT ATT TTT ACT ATT ACT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
32391405 ATT AT
1 ATT AT
32391410 ACTATTAAAC
Statistics
Matches: 77, Mismatches: 16, Indels: 4
0.79 0.16 0.04
Matches are distributed among these distances:
2 1 0.01
3 73 0.95
4 3 0.04
ACGTcount: A:0.32, C:0.07, G:0.01, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:32391584 original size:18 final size:18
Alignment explanation
Indices: 32391563--32391600 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
32391553 TTTCAAAATT
*
32391563 TTATATTTTA-TATTTTTA
1 TTAT-TTTTACTATTATTA
32391581 TTATTTTTACTATTATTA
1 TTATTTTTACTATTATTA
32391599 TT
1 TT
32391601 GTTATTAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (18 bp):
TTATTTTTACTATTATTA
Found at i:32403969 original size:143 final size:143
Alignment explanation
Indices: 32403709--32404737 Score: 1400
Period size: 143 Copynumber: 7.2 Consensus size: 143
32403699 TCTCCTTGAT
* * *
32403709 GTTGCAGTGGAACA-ATTTAAAGCTACGAATTATGGCGAATCTTATCTTCCTGAAGTTGCAGTGG
1 GTTGCAGTGGAACAGA-TTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAGTGG
* * *
32403773 AGCAGGA-TGAAGCCACCAGCCTTATCTCCCTAAAGTTGCAGCGGAGCAAATTGAAGATAGCGGA
65 AGCA-GATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCGGA
* *
32403837 TCTTATTTCCCTAAT
129 TCTTATTTCCCTGAC
* * * *
32403852 ATTGCAGTGGAACAGATTGAAGCTTCAAATTATGGCGAATCTTATCTTTCTGAAGTTACAATGGA
1 GTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAGTGGA
* * * * * * * *
32403917 GTAGATTGAAGCCACTAGCGTTATCTCCCTAAAGTTGCAGCAGAGCAGATTGAAAATTGCGGATC
66 GCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCGGATC
*
32403982 TTATTTCCCTGAT
131 TTATTTCCCTGAC
* *
32403995 GTTGCAGTGGAACAAATTGAGGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAGTGGA
1 GTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAGTGGA
* * ** ** * * *
32404060 GTAGATTGAAGCCACCAGCCTTATCTCCTTGAAGTTGCAATGGAATAGACTGAAGACATCGAATC
66 GCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCGGATC
32404125 TTATTTCCCTGAC
131 TTATTTCCCTGAC
* * * *
32404138 ATTGCAGTGGAACAGATTAAAGCTACAAATTATGGCGAATCTTATCTTCCTGAAGTTGTAGTGGA
1 GTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAGTGGA
* * * * * *
32404203 GCAGATTGAAGCCACCAACCTTATCTCCCTAAAGTTGCAACGGAGCAGACTGAAGACAACGAATC
66 GCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCGGATC
* *
32404268 TTATTTCCCTTAT
131 TTATTTCCCTGAC
* *
32404281 GTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGACTCTTATCTTTCTAAAGTTGCAGTGGA
1 GTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAGTGGA
* * * * * * ***
32404346 GCAGATTGAAGCTACTAGCCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAAGACAGTAAATC
66 GCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCGGATC
32404411 TTATTTCCCTGAC
131 TTATTTCCCTGAC
*
32404424 GTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATC-TTCTTAAAGTTGCAGTGG
1 GTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTC-TGAAGTTGCAGTGG
* *
32404488 AGCAGATTGAAGCCATCAGCCTTATCTCCCTGAAGTTGCAGCGAAGCAGACTGAAGATAGCGGAT
65 AGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCGGAT
*
32404553 CTTATTTCCTTGAC
130 CTTATTTCCCTGAC
* *
32404567 GTTGTAGTGGAACAGATTGAGGCTACAAATTATGGCGAATCTTATC-TTCTTGAAGTTGCAGTGG
1 GTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTC-TGAAGTTGCAGTGG
* * *
32404631 AACAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAGATAGCGGAT
65 AGCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCGGAT
*
32404696 CTTATTTCCCTGAA
130 CTTATTTCCCTGAC
*
32404710 GTTGCAGTGGAGCAGATTGAAGCTACAA
1 GTTGCAGTGGAACAGATTGAAGCTACAA
32404738 GTTACTGATA
Statistics
Matches: 787, Mismatches: 96, Indels: 6
0.89 0.11 0.01
Matches are distributed among these distances:
142 5 0.01
143 781 0.99
144 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (143 bp):
GTTGCAGTGGAACAGATTGAAGCTACAAATTATGGCGAATCTTATCTTTCTGAAGTTGCAGTGGA
GCAGATTGAAGCCACCAGCCTTATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATAGCGGATC
TTATTTCCCTGAC
Found at i:32404302 original size:45 final size:44
Alignment explanation
Indices: 32404173--32404732 Score: 180
Period size: 45 Copynumber: 12.0 Consensus size: 44
32404163 CAAATTATGG
* * *
32404173 CGAATCTTATCTT-CCTGAAGTTGTAGTGGAGCAGATTGAAGCCA
1 CGAATCTTAT-TTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAA
* * * ** *
32404217 CCAACCTTATCTCCCTAAAGTTGCAACGGAGCAGACTGAAGACAA
1 CGAATCTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAG-CAA
* * *
32404262 CGAATCTTATTTCCCTTATGTTGCAGTGGAACAGATTGAAGCTACAAATTA
1 CGAATCTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAG---C--A--A
* * *
32404313 TGGCGACTCTTATCTT-TCTAAAGTTGCAGTGGAGCAGATTGAAGCTA
1 ---CGAATCTTAT-TTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAA
* ** * * * * * *
32404360 CTAGCCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAAGACAG
1 CGAATCTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAG-CAA
** * * *
32404405 TAAATCTTATTTCCCTGACGTTGCAGTGGAACAGATTGAAGCTACAAATTA
1 CGAATCTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAG---C--A--A
* *
32404456 TGGCGAATCTTATCTT-CTTAAAGTTGCAGTGGAGCAGATTGAAGCCAT
1 ---CGAATCTTAT-TTCCCTAAAGTTGCAGTGGAGCAGATTGAAG-CAA
** * * * * *
32404504 C-AGCCTTATCTCCCTGAAGTTGCAGCGAAGCAGACTGAAG-ATA
1 CGAATCTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCA-A
* * * * * * *
32404547 GCGGATCTTATTTCCTTGACGTTGTAGTGGAACAGATTGAGGCTACAAATTA
1 -CGAATCTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAG---C--A--A
* * * *
32404599 TGGCGAATCTTATCTT-CTTGAAGTTGCAGTGGAACAGATTGAAGCCA
1 ---CGAATCTTAT-TTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAA
* ** * * * *
32404646 CCAGCCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAG-ATA
1 CGAATCTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCA-A
* *
32404690 GCGGATCTTATTTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
1 -CGAATCTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAGC
32404733 TACAAGTTAC
Statistics
Matches: 378, Mismatches: 96, Indels: 82
0.68 0.17 0.15
Matches are distributed among these distances:
42 1 0.00
43 4 0.01
44 123 0.33
45 128 0.34
47 6 0.02
49 2 0.01
50 1 0.00
51 4 0.01
52 3 0.01
54 100 0.26
55 6 0.02
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (44 bp):
CGAATCTTATTTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCAA
Found at i:32404494 original size:54 final size:48
Alignment explanation
Indices: 32403743--32404732 Score: 256
Period size: 44 Copynumber: 20.9 Consensus size: 48
32403733 ACGAATTATG
* * **
32403743 GCGAATCTTATCTTCCTGAAGTTGCAGTGGAGCAGGA-TGAAGCCACCA
1 GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACA-GATTGAAGCCATTA
* * * * * *
32403791 GC----CTTATCTCCCTAAAGTTGCAGCGGAGCAAATTGAAG--A-TA
1 GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* * *
32403832 GCGGATCTTAT-TTCCCT-AATATTGCAGTGGAACAGATTGAAGCTTCAAATTA
1 GCGAATCTTATCTT-CTTGAA-GTTGCAGTGGAACAGATTGAAGC--C--ATTA
* * ** *
32403884 TGGCGAATCTTATCTT-TCTGAAGTTACAATGGAGTAGATTGAAGCCACTA
1 --GCGAATCTTATCTTCT-TGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* * * ** * *
32403934 GCG----TTATCTCCCTAAAGTTGCAGCAGAGCAGATTGAA--AATT-
1 GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* * * * *
32403975 GCGGATCTTAT-TTCCCTGATGTTGCAGTGGAACAAATTGAGGCTACAAATTA
1 GCGAATCTTATCTT-CTTGAAGTTGCAGTGGAACAGATTGAAGC--C--ATTA
** **
32404027 TGGCGAATCTTATCTT-TCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCA
1 --GCGAATCTTATCTTCT-TGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* * * * *
32404077 GC----CTTATCTCCTTGAAGTTGCAATGGAATAGACTGAAGACA-T-
1 GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* *
32404119 -CGAATCTTAT-TTCCCTGACA-TTGCAGTGGAACAGATTAAAGCTACAAATTA
1 GCGAATCTTATCTT-CTTGA-AGTTGCAGTGGAACAGATTGAAGC--C--ATTA
* * *
32404170 TGGCGAATCTTATCTTCCTGAAGTTGTAGTGGAGCAGATTGAAGCC---A
1 --GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* * * * * ** * * *
32404217 -CCAACCTTATCTCCCTAAAGTTGCAACGGAGCAGACTGAAGACA--A
1 GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCATTA
*
32404262 -CGAATCTTAT-TTCCCTT-ATGTTGCAGTGGAACAGATTGAAGCTACAAATTA
1 GCGAATCTTATCTT--CTTGAAGTTGCAGTGGAACAGATTGAAGC--C--ATTA
* * * * *
32404313 TGGCGACTCTTATCTT-TCTAAAGTTGCAGTGGAGCAGATTGAAGCTACTA
1 --GCGAATCTTATCTTCT-TGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* * * * * * * *
32404363 GC----CTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAAGACAGTA
1 GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* *
32404407 ---AATCTTAT-TTCCCTGACGTTGCAGTGGAACAGATTGAAGCTACAAATTA
1 GCGAATCTTATCTT-CTTGAAGTTGCAGTGGAACAGATTGAAGC--C--ATTA
* * *
32404456 TGGCGAATCTTATCTTCTTAAAGTTGCAGTGGAGCAGATTGAAGCCATCA
1 --GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* * * *
32404506 GC----CTTATCTCCCTGAAGTTGCAG-CGAAGCAGACTGAAG--A-TA
1 GCGAATCTTATCTTCTTGAAGTTGCAGTGGAA-CAGATTGAAGCCATTA
* * * *
32404547 GCGGATCTTAT-TTCCTTGACGTTGTAGTGGAACAGATTGAGGCTACAAATTA
1 GCGAATCTTATCTT-CTTGAAGTTGCAGTGGAACAGATTGAAGC--C--ATTA
**
32404599 TGGCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCACCA
1 --GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCATTA
* * *
32404649 GC----CTTATCTCCCTGAAGTTGCAGT-GAAGCAGACTGAAG--A-TA
1 GCGAATCTTATCTTCTTGAAGTTGCAGTGGAA-CAGATTGAAGCCATTA
* * *
32404690 GCGGATCTTAT-TTCCCTGAAGTTGCAGTGGAGCAGATTGAAGC
1 GCGAATCTTATCTT-CTTGAAGTTGCAGTGGAACAGATTGAAGC
32404733 TACAAGTTAC
Statistics
Matches: 698, Mismatches: 135, Indels: 220
0.66 0.13 0.21
Matches are distributed among these distances:
41 13 0.02
42 5 0.01
43 6 0.01
44 218 0.31
45 184 0.26
46 8 0.01
47 4 0.01
48 13 0.02
49 5 0.01
50 14 0.02
51 6 0.01
52 10 0.01
53 2 0.00
54 196 0.28
55 14 0.02
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (48 bp):
GCGAATCTTATCTTCTTGAAGTTGCAGTGGAACAGATTGAAGCCATTA
Found at i:32405162 original size:20 final size:20
Alignment explanation
Indices: 32405137--32405174 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32405127 CCAAATCCAA
32405137 AAAC-AAACCTAAACCCAACT
1 AAACAAAACCT-AACCCAACT
32405157 AAACAAAACCTAACCCAA
1 AAACAAAACCTAACCCAA
32405175 AACCTATCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.58, C:0.34, G:0.00, T:0.08
Consensus pattern (20 bp):
AAACAAAACCTAACCCAACT
Found at i:32406217 original size:3 final size:3
Alignment explanation
Indices: 32406209--32406333 Score: 100
Period size: 3 Copynumber: 43.3 Consensus size: 3
32406199 TAATTTTAAC
* * * *
32406209 ATT ATT ATT ACT -TT ATT ATT AAT ACT ATT ATT ATT ATT -TT -TT ACT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* * ** * *
32406254 GTT ATT ATTT ATT ATT ATT ATT ATT ACT ATT ACA ACT ATT -GT ATT
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
32406299 ATT ACT ATT ATT ATT A-T ATT ATT ATT A-T ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
32406334 AACTGATTTA
Statistics
Matches: 97, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
2 10 0.10
3 84 0.87
4 3 0.03
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:32406241 original size:29 final size:30
Alignment explanation
Indices: 32406209--32406330 Score: 100
Period size: 28 Copynumber: 4.3 Consensus size: 30
32406199 TAATTTTAAC
*
32406209 ATTATTATTACT-TTATTATTAATACTATT
1 ATTATTATTACTATTACTATTAATACTATT
* * *
32406238 ATTATTATT--TTTTACTGTTATTA-T-TT
1 ATTATTATTACTATTACTATTAATACTATT
*
32406264 ATTATTATTATTATTACTATTACA-ACTATT
1 ATTATTATTACTATTACTATTA-ATACTATT
* * *
32406294 -GTATTATTACTATTATTATT-ATATTATT
1 ATTATTATTACTATTACTATTAATACTATT
32406322 ATTA-TATTA
1 ATTATTATTA
32406331 TTAAACTGAT
Statistics
Matches: 74, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
26 11 0.15
27 3 0.04
28 29 0.39
29 29 0.39
30 2 0.03
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.60
Consensus pattern (30 bp):
ATTATTATTACTATTACTATTAATACTATT
Found at i:32406260 original size:16 final size:16
Alignment explanation
Indices: 32406209--32406326 Score: 87
Period size: 17 Copynumber: 7.1 Consensus size: 16
32406199 TAATTTTAAC
32406209 ATTA-TTATTACT-TT
1 ATTATTTATTACTATT
* *
32406223 ATTATTAATACTATTATT
1 ATTATT--TATTACTATT
* *
32406241 ATTATTTTTTACTGTT
1 ATTATTTATTACTATT
*
32406257 ATTATTTATTATTATT
1 ATTATTTATTACTATT
* *
32406273 ATTATTACTATTACAACT
1 ATTATT--TATTACTATT
*
32406291 ATTGTATTATTACTATT
1 ATTAT-TTATTACTATT
*
32406308 ATTATTATATTATTATT
1 ATTATT-TATTACTATT
32406325 AT
1 AT
32406327 ATTATTAAAC
Statistics
Matches: 79, Mismatches: 17, Indels: 13
0.72 0.16 0.12
Matches are distributed among these distances:
14 4 0.05
15 1 0.01
16 26 0.33
17 28 0.35
18 19 0.24
19 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (16 bp):
ATTATTTATTACTATT
Found at i:32406419 original size:17 final size:17
Alignment explanation
Indices: 32406394--32406434 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
32406384 TACTATTATT
32406394 TTTTATAGATTGGTTTTA
1 TTTT-TAGATTGGTTTTA
32406412 TTTTTAGATTGGTTTTA
1 TTTTTAGATTGGTTTTA
32406429 TTTTTA
1 TTTTTA
32406435 CTTTTATCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.20, C:0.00, G:0.15, T:0.66
Consensus pattern (17 bp):
TTTTTAGATTGGTTTTA
Found at i:32412854 original size:12 final size:12
Alignment explanation
Indices: 32412837--32412868 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
32412827 TGTAATTGTC
32412837 CACACGGGTAGA
1 CACACGGGTAGA
32412849 CACACGGGTAGA
1 CACACGGGTAGA
32412861 CACACGGG
1 CACACGGG
32412869 CGTGTGTGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.28, G:0.34, T:0.06
Consensus pattern (12 bp):
CACACGGGTAGA
Found at i:32420028 original size:21 final size:23
Alignment explanation
Indices: 32420003--32420055 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
32419993 GCCTGAGCCA
32420003 CTGCTG-T-TGTTGTTGAAAATG
1 CTGCTGATGTGTTGTTGAAAATG
*
32420024 CTGCTGATTGTGTTGTTGAAAGTG
1 CTGCTGA-TGTGTTGTTGAAAATG
32420048 CTGCTGAT
1 CTGCTGAT
32420056 TATGAACCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 6 0.21
23 2 0.07
24 20 0.71
ACGTcount: A:0.17, C:0.11, G:0.30, T:0.42
Consensus pattern (23 bp):
CTGCTGATGTGTTGTTGAAAATG
Found at i:32420042 original size:24 final size:24
Alignment explanation
Indices: 32420010--32420056 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
32420000 CCACTGCTGT
32420010 TGTTGTTGAAAATGCTGCTGATTG
1 TGTTGTTGAAAATGCTGCTGATTG
*
32420034 TGTTGTTGAAAGTGCTGCTGATT
1 TGTTGTTGAAAATGCTGCTGATT
32420057 ATGAACCAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.09, G:0.30, T:0.43
Consensus pattern (24 bp):
TGTTGTTGAAAATGCTGCTGATTG
Found at i:32420897 original size:18 final size:18
Alignment explanation
Indices: 32420871--32420905 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32420861 ATTTATTAAT
32420871 CCAAGTACCCAACCCAAA
1 CCAAGTACCCAACCCAAA
*
32420889 CCAATTACCCAACCCAA
1 CCAAGTACCCAACCCAA
32420906 TTATAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.46, G:0.03, T:0.09
Consensus pattern (18 bp):
CCAAGTACCCAACCCAAA
Found at i:32420944 original size:5 final size:6
Alignment explanation
Indices: 32420931--32420965 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
32420921 ATAATTTAAT
32420931 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAA
32420966 ACATATAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 21 0.78
8 6 0.22
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:32420953 original size:14 final size:14
Alignment explanation
Indices: 32420934--32420960 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
32420924 ATTTAATAAA
32420934 TAAAAATAAAAATC
1 TAAAAATAAAAATC
32420948 TAAAAATAAAAAT
1 TAAAAATAAAAAT
32420961 AAAAAACATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.04, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAAATAAAAATC
Found at i:32420965 original size:21 final size:22
Alignment explanation
Indices: 32420908--32420966 Score: 68
Period size: 21 Copynumber: 2.6 Consensus size: 22
32420898 CAACCCAATT
*
32420908 ATAAAAATTACAAATAATTTAATAA
1 ATAAAAA-TA-AAA-AATCTAATAA
32420933 ATAAAAAT-AAAAATCTAA-AA
1 ATAAAAATAAAAAATCTAATAA
32420953 ATAAAAATAAAAAA
1 ATAAAAATAAAAAA
32420967 CATATAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 10 0.31
21 11 0.34
22 3 0.09
24 1 0.03
25 7 0.22
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAAAATAAAAAATCTAATAA
Found at i:32421006 original size:9 final size:9
Alignment explanation
Indices: 32420985--32421034 Score: 73
Period size: 9 Copynumber: 5.6 Consensus size: 9
32420975 TTTATACAAA
*
32420985 TAATTTGGT
1 TAATTCGGT
*
32420994 TAATTCGGG
1 TAATTCGGT
32421003 TAATTCGGT
1 TAATTCGGT
*
32421012 TAATTCGAT
1 TAATTCGGT
32421021 TAATTCGGT
1 TAATTCGGT
32421030 TAATT
1 TAATT
32421035 TTATACTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.26, C:0.08, G:0.20, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:32421955 original size:18 final size:18
Alignment explanation
Indices: 32421912--32421965 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
32421902 ATAATAAAAT
*
32421912 ACTATTAAGATAAGTATTA
1 ACTATTAAAATAA-TATTA
* **
32421931 AAT-TTAATTTAATATTA
1 ACTATTAAAATAATATTA
32421948 ACTATTAAAATAATATTA
1 ACTATTAAAATAATATTA
32421966 TTTTTTGAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 7 0.25
18 19 0.68
19 2 0.07
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.43
Consensus pattern (18 bp):
ACTATTAAAATAATATTA
Found at i:32421961 original size:23 final size:22
Alignment explanation
Indices: 32421865--32421961 Score: 63
Period size: 23 Copynumber: 4.1 Consensus size: 22
32421855 ATAAATGTTA
*
32421865 AATTTAAT-CTAATATTAAAAT
1 AATTTAATATTAATATTAAAAT
*
32421886 AACCACTTTAATATTAATAATAAAAT
1 -A--A-TTTAATATTAATATTAAAAT
* * *
32421912 ACTATTAAGA-TAAGTATTAAATTT
1 AAT-TTAATATTAA-TATTAAA-AT
32421936 AATTTAATATTAACTATTAAAAT
1 AATTTAATATTAA-TATTAAAAT
32421959 AAT
1 AAT
32421962 ATTATTTTTT
Statistics
Matches: 57, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
22 5 0.09
23 20 0.35
24 14 0.25
25 7 0.12
26 11 0.19
ACGTcount: A:0.52, C:0.06, G:0.02, T:0.40
Consensus pattern (22 bp):
AATTTAATATTAATATTAAAAT
Found at i:32426130 original size:40 final size:40
Alignment explanation
Indices: 32426024--32426196 Score: 174
Period size: 40 Copynumber: 4.3 Consensus size: 40
32426014 TATAATCTCG
* * **
32426024 CACACTAAGTACCTTT-TATAGCCGAAGCTATCTC-ACTCTTG
1 CACACTAAGT-GCTTTATATAGCTGAAGCTATCTCGA-T-TCA
**
32426065 CACACTAAGTGCCATATATAGCTGAAGCTAT-TCTGATTCA
1 CACACTAAGTGCTTTATATAGCTGAAGCTATCTC-GATTCA
* * *
32426105 CACATTAAGTGCTTTATATAACTGAAGCTATCTCAATAT-A
1 CACACTAAGTGCTTTATATAGCTGAAGCTATCTCGAT-TCA
* *
32426145 CACACTAAGTGCTTTATATAGCCGAAGCTATCTCGATACA
1 CACACTAAGTGCTTTATATAGCTGAAGCTATCTCGATTCA
32426185 CACACTAAGTGC
1 CACACTAAGTGC
32426197 CAAACATAAC
Statistics
Matches: 110, Mismatches: 16, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
40 81 0.74
41 28 0.25
42 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (40 bp):
CACACTAAGTGCTTTATATAGCTGAAGCTATCTCGATTCA
Found at i:32426163 original size:80 final size:80
Alignment explanation
Indices: 32425982--32426196 Score: 227
Period size: 80 Copynumber: 2.6 Consensus size: 80
32425972 CCATATCTCG
* * * * * * *
32425982 CACACTAAGTGTCAAATCATAGCTGAAGCTATTATAATCTCGCACACTAAGTACCTTTTATAGCC
1 CACACTAAGTGCCATAT-ATAGCTGAAGCTATTCTGAT-TCACACACTAAGT-GCTTTTATAACC
* * *
32426047 GAAGCTATCTCACTCTTG
63 GAAGCTATCTCAATCATA
* *
32426065 CACACTAAGTGCCATATATAGCTGAAGCTATTCTGATTCACACATTAAGTGCTTTATATAACTGA
1 CACACTAAGTGCCATATATAGCTGAAGCTATTCTGATTCACACACTAAGTGCTTT-TATAACCGA
32426130 AGCTATCTCAAT-ATA
65 AGCTATCTCAATCATA
** * *
32426145 CACACTAAGTGCTTTATATAGCCGAAGCTA-TCTCGATACACACACTAAGTGC
1 CACACTAAGTGCCATATATAGCTGAAGCTATTCT-GATTCACACACTAAGTGC
32426197 CAAACATAAC
Statistics
Matches: 113, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
79 3 0.03
80 48 0.42
81 29 0.26
82 18 0.16
83 15 0.13
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (80 bp):
CACACTAAGTGCCATATATAGCTGAAGCTATTCTGATTCACACACTAAGTGCTTTTATAACCGAA
GCTATCTCAATCATA
Found at i:32431734 original size:19 final size:19
Alignment explanation
Indices: 32431712--32431753 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
32431702 AAGTAAACTT
32431712 ATAGAAGCTTAGTAAGCTC
1 ATAGAAGCTTAGTAAGCTC
32431731 ATAGAAGCTTAGTAAGCTC
1 ATAGAAGCTTAGTAAGCTC
32431750 ATAG
1 ATAG
32431754 GCATAGAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.26
Consensus pattern (19 bp):
ATAGAAGCTTAGTAAGCTC
Found at i:32435422 original size:21 final size:21
Alignment explanation
Indices: 32435396--32435438 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
32435386 GATCACTGAG
32435396 TAAGAGATCTTACTGATTTGA
1 TAAGAGATCTTACTGATTTGA
32435417 TAAGAGATCTTACTGATTTGA
1 TAAGAGATCTTACTGATTTGA
32435438 T
1 T
32435439 GCATCTCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (21 bp):
TAAGAGATCTTACTGATTTGA
Found at i:32439369 original size:14 final size:13
Alignment explanation
Indices: 32439340--32439375 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
32439330 AAGTACTTTT
32439340 AAAAAGTGCTGTG
1 AAAAAGTGCTGTG
32439353 AAAAAGTGCTGTG
1 AAAAAGTGCTGTG
* *
32439366 GAAAACTGCT
1 AAAAAGTGCT
32439376 TTTGAGAAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (13 bp):
AAAAAGTGCTGTG
Found at i:32439395 original size:26 final size:26
Alignment explanation
Indices: 32439320--32439396 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 26
32439310 TGTTTGGCAA
* * *
32439320 TGCTTTTGAAAAGTACTTTTAAAAAG
1 TGCTTTTGAAAAGTGCTTTTGAAAAC
* * *
32439346 TGC-TGTGAAAAAGTGCTGTGGAAAAC
1 TGCTTTTG-AAAAGTGCTTTTGAAAAC
*
32439372 TGCTTTTGAGAAGTGCTTTTGAAAA
1 TGCTTTTGAAAAGTGCTTTTGAAAA
32439397 TTTTAGATGT
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
25 3 0.08
26 33 0.85
27 3 0.08
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (26 bp):
TGCTTTTGAAAAGTGCTTTTGAAAAC
Found at i:32441556 original size:73 final size:72
Alignment explanation
Indices: 32441432--32441671 Score: 349
Period size: 72 Copynumber: 3.3 Consensus size: 72
32441422 AAAATCATAT
*
32441432 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTCAATATCCCAA
1 ATAAACAACTATTGATAAAACTAGA-TTACATATAAATAAGTAGAACATAAATTCAATAT-CCAA
*
32441495 AGACCAAAC
64 AAACCAAAC
* * * * *
32441504 ATAAACAGCTATTAATAAAAGTAGATTACATATACATAAGTAGAACATAAATTCAATATTCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACATATAAATAAGTAGAACATAAATTCAATATCCAAAA
32441569 ACCAAAC
66 ACCAAAC
* * *
32441576 ATAAACAACCATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAGTTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACATATAAATAAGTAGAACATAAATTCAATATCCAAAA
32441641 ACCAAAC
66 ACCAAAC
*
32441648 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
32441672 TTTAGCATTT
Statistics
Matches: 149, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
72 120 0.81
73 29 0.19
ACGTcount: A:0.54, C:0.15, G:0.07, T:0.24
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACATATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:32442119 original size:18 final size:18
Alignment explanation
Indices: 32442098--32442145 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
32442088 TCCACCAATT
*
32442098 TGAACATCATTTGAAATG
1 TGAACATCATTTAAAATG
32442116 TGAACATCATTTAAAATG
1 TGAACATCATTTAAAATG
*
32442134 TCAACATCATTT
1 TGAACATCATTT
32442146 CTCACATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTAAAATG
Found at i:32444993 original size:52 final size:52
Alignment explanation
Indices: 32444895--32444998 Score: 138
Period size: 52 Copynumber: 2.0 Consensus size: 52
32444885 CTGTAAGACA
* *
32444895 TTTTCCATCTCCTCTTCATCTAGGTAAGCCTTTTTCTTCTTGCGTTCTTCAACT
1 TTTTCCATCTCCTCTTCATCCAGGTAAG-C-TCTTCTTCTTGCGTTCTTCAACT
* *
32444949 TTTTCCATCTCCTTCTTTATCCAGGTAAG-TCTTCTTCTTTCGTTCTTCAA
1 TTTTCCATCTCC-TCTTCATCCAGGTAAGCTCTTCTTCTTGCGTTCTTCAA
32444999 ATATCTTCCC
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
52 19 0.42
54 12 0.27
55 14 0.31
ACGTcount: A:0.13, C:0.29, G:0.09, T:0.49
Consensus pattern (52 bp):
TTTTCCATCTCCTCTTCATCCAGGTAAGCTCTTCTTCTTGCGTTCTTCAACT
Found at i:32448053 original size:15 final size:15
Alignment explanation
Indices: 32448029--32448083 Score: 83
Period size: 15 Copynumber: 3.7 Consensus size: 15
32448019 ACTCCATTCC
* *
32448029 CTTTACTCATGGTAA
1 CTTTAGTCATAGTAA
*
32448044 CTTTAATCATAGTAA
1 CTTTAGTCATAGTAA
32448059 CTTTAGTCATAGTAA
1 CTTTAGTCATAGTAA
32448074 CTTTAGTCAT
1 CTTTAGTCAT
32448084 TGCTTGAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
15 37 1.00
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (15 bp):
CTTTAGTCATAGTAA
Found at i:32449968 original size:25 final size:25
Alignment explanation
Indices: 32449940--32450048 Score: 88
Period size: 25 Copynumber: 4.6 Consensus size: 25
32449930 AGGTGTATAC
*
32449940 ATAGTATTAAAAATATGTACATAAT
1 ATAGTATTAAAAATATATACATAAT
* *
32449965 ATAGCATTAAAAATATATACATAAG
1 ATAGTATTAAAAATATATACATAAT
* *
32449990 ATAATATGT--AAA-A-AT--GTAAT
1 ATAGTAT-TAAAAATATATACATAAT
* *
32450010 ATAGTATTAGAAATATATACATGAT
1 ATAGTATTAAAAATATATACATAAT
*
32450035 ATA-TATAAAAAATA
1 ATAGTATTAAAAATA
32450049 CAATATTAAA
Statistics
Matches: 65, Mismatches: 12, Indels: 15
0.71 0.13 0.16
Matches are distributed among these distances:
19 1 0.02
20 9 0.14
21 3 0.05
22 3 0.05
23 3 0.05
24 12 0.18
25 33 0.51
26 1 0.02
ACGTcount: A:0.55, C:0.04, G:0.08, T:0.33
Consensus pattern (25 bp):
ATAGTATTAAAAATATATACATAAT
Found at i:32450031 original size:70 final size:69
Alignment explanation
Indices: 32449882--32450037 Score: 167
Period size: 70 Copynumber: 2.2 Consensus size: 69
32449872 ATGATATATG
* * *
32449882 AATATATACATATAT-GTATTAAAATATATACGTAATAATAGGAATAAAAGGTGTATACATAGTA
1 AATATATACATATATAGCATTAAAATATATACATAATAATAGG-ATAAAAGATGTATACATAGTA
32449946 TTAAA
65 TTAAA
* * *
32449951 AATATGTACATAATATAGCATTAAAAATATATACATAAGATAATATG-TAAAA-ATGTA-ATATA
1 AATATATACAT-ATATAGCATT-AAAATATATACAT-A-ATAATAGGATAAAAGATGTATACATA
*
32450013 GTATTAGA
62 GTATTAAA
32450021 AATATATACATGATATA
1 AATATATACAT-ATATA
32450038 TATAAAAAAT
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
69 10 0.14
70 30 0.41
71 8 0.11
72 17 0.23
73 1 0.01
74 7 0.10
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.33
Consensus pattern (69 bp):
AATATATACATATATAGCATTAAAATATATACATAATAATAGGATAAAAGATGTATACATAGTAT
TAAA
Found at i:32450047 original size:43 final size:44
Alignment explanation
Indices: 32449961--32450047 Score: 115
Period size: 45 Copynumber: 2.0 Consensus size: 44
32449951 AATATGTACA
*
32449961 TAATATAGCATTAAAAATATATACATAAGATAATATGTAAAAATG
1 TAATATAGCATTAAAAATATATACAT-AGATAATATGAAAAAATG
* *
32450006 TAATATAGTATTAGAAATATATACAT-GATATATAT-AAAAAAT
1 TAATATAGCATTAAAAATATATACATAGATA-ATATGAAAAAAT
32450048 ACAATATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 10 0.26
44 4 0.11
45 24 0.63
ACGTcount: A:0.55, C:0.03, G:0.08, T:0.33
Consensus pattern (44 bp):
TAATATAGCATTAAAAATATATACATAGATAATATGAAAAAATG
Found at i:32450893 original size:37 final size:37
Alignment explanation
Indices: 32450852--32450924 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
32450842 ACCCCAGCCC
* *
32450852 ACTAACTTAATAATCCAAGCCCAACATAAACTAACCT
1 ACTAACTTAATAATCCAAACCCAACACAAACTAACCT
* * *
32450889 ACTAACTTAATATTTCAAACCGAACACAAACTAACC
1 ACTAACTTAATAATCCAAACCCAACACAAACTAACC
32450925 CATCTCACTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.47, C:0.29, G:0.03, T:0.22
Consensus pattern (37 bp):
ACTAACTTAATAATCCAAACCCAACACAAACTAACCT
Found at i:32451590 original size:30 final size:29
Alignment explanation
Indices: 32451556--32451670 Score: 124
Period size: 30 Copynumber: 3.9 Consensus size: 29
32451546 AATTTAAAAG
* *
32451556 AAAGTTTAGGGGTCGAAGTGAAATTTAAA
1 AAAGTTTAGGGGTCAAAATGAAATTTAAA
32451585 TAAAGTTTAGGGGTCAAAATGAAATTTAGAA
1 -AAAGTTTAGGGGTCAAAATGAAATTTA-AA
* * * *
32451616 AAATTTTAGGTGTCAAAATGCAATTTACGA
1 AAAGTTTAGGGGTCAAAATGAAATTTA-AA
* *
32451646 AAAGTTTAAGGGTC-AAATGCAATTT
1 AAAGTTTAGGGGTCAAAATGAAATTT
32451671 TTTCATTTTT
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
29 11 0.15
30 61 0.82
31 2 0.03
ACGTcount: A:0.42, C:0.06, G:0.22, T:0.30
Consensus pattern (29 bp):
AAAGTTTAGGGGTCAAAATGAAATTTAAA
Found at i:32451624 original size:60 final size:61
Alignment explanation
Indices: 32451525--32451670 Score: 140
Period size: 60 Copynumber: 2.5 Consensus size: 61
32451515 TGTAATTTTT
* * * * *
32451525 AAAAA-TTT-AGGATCAAATTGTAATTTAAAAGAAAGTTTAGGGGTCGAAGTGAAATTTA-
1 AAAAAGTTTAAGGGTCAAAATGAAATTTAAAAGAAAGTTTAGGGGTCAAAATGAAATTTAC
* * * * *
32451583 AATAAAGTTTAGGGGTCAAAATGAAATTTAGAA-AAATTTTAGGTGTCAAAATGCAATTTAC
1 AA-AAAGTTTAAGGGTCAAAATGAAATTTAAAAGAAAGTTTAGGGGTCAAAATGAAATTTAC
* *
32451644 GAAAAGTTTAAGGGTC-AAATGCAATTT
1 AAAAAGTTTAAGGGTCAAAATGAAATTT
32451671 TTTCATTTTT
Statistics
Matches: 71, Mismatches: 13, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
58 2 0.03
59 13 0.18
60 38 0.54
61 18 0.25
ACGTcount: A:0.44, C:0.05, G:0.20, T:0.31
Consensus pattern (61 bp):
AAAAAGTTTAAGGGTCAAAATGAAATTTAAAAGAAAGTTTAGGGGTCAAAATGAAATTTAC
Found at i:32452129 original size:78 final size:78
Alignment explanation
Indices: 32451852--32452325 Score: 472
Period size: 78 Copynumber: 6.0 Consensus size: 78
32451842 TTATTCTTTA
* * * * * * * *
32451852 TTGAAAAACAAAAAATTG-GAAATAGCTCGAG-ATGCGACCCGAAGTTCAACTCACCTCTCGGAT
1 TTGAAAGAC-AAAAATTGAAAAATACCTCG-GCATGTGACCCGAGGCTCAACTCACCTCTCGCAA
*
32451915 TATGAGTTGATCTTT
64 TATGAGTTGATTTTT
*** * * * *
32451930 GAAAAAGTA-AAAAATTG-AAAATACCTCAGCGTGTGACCTGAGGCTTAACTCACCTCTCGCAAT
1 TTGAAAG-ACAAAAATTGAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAAT
32451993 ATGAGTTGATTGTTTTTTT
65 ATGAGTTGA-----TTTTT
* * * *
32452012 TTGAAAAACAAAAATTGAAAAATACTTCGGTATGTGACCCGAGGCTCAACTCACCTCTCACAATA
1 TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
32452077 TGAGTTGATTTTT
66 TGAGTTGATTTTT
* * * * ** *
32452090 TTGAAAGACAAAAATTGAAAAAAACTTCAGCATGTGACCCGAGCCTCAACTCGTCTCTCGTAATA
1 TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
**
32452155 TGAGTT-AAGTTT
66 TGAGTTGATTTTT
* * * * * *
32452167 TTGAAAGACAGAAATTGAAAAATACCTCGGCATGTAACCCTAGCCTTAACTCACCTCTCGTAATA
1 TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
32452232 TGAGTTGATTTTT
66 TGAGTTGATTTTT
* * * ** *
32452245 TTGAAAAATAGAAATTGAAAAATACCTCGGTGTGTGACCCAAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
32452310 TGAGTTGATTTTT
66 TGAGTTGATTTTT
32452323 TTG
1 TTG
32452326 TTTTGGAAAA
Statistics
Matches: 328, Mismatches: 58, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
76 1 0.00
77 116 0.35
78 146 0.45
79 1 0.00
81 1 0.00
82 15 0.05
83 48 0.15
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (78 bp):
TTGAAAGACAAAAATTGAAAAATACCTCGGCATGTGACCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTT
Found at i:32452323 original size:155 final size:155
Alignment explanation
Indices: 32451897--32452323 Score: 491
Period size: 155 Copynumber: 2.7 Consensus size: 155
32451887 GACCCGAAGT
* * *
32451897 TCAACTCACCTCTCGGATTATGAGTTGA--TCTTTGAAAAAGTAAAAAATTG-AAAATACCTCAG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAA-T-AAAAATTGAAAAATACCTCAG
* *
32451959 CGTGTGACCTGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTGTTTTTTTTTGAAAAACAAA
64 CGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA------TTTTTTGAAAAACAAA
* * * *
32452024 AATTGAAAAATACTTCGGTATGTGACCCGAGGC
123 AATTGAAAAATACCTCGGCATGTAACCCGAGCC
* * * * * *
32452057 TCAACTCACCTCTCACAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAAAAACTTCAGCA
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAAAAATTGAAAAATACCTCAGCG
* ** * * * * *
32452122 TGTGACCCGAGCCTCAACTCGTCTCTCGTAATATGAGTTAAGTTTTTGAAAGACAGAAATTGAAA
66 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAA
*
32452187 AATACCTCGGCATGTAACCCTAGCC
131 AATACCTCGGCATGTAACCCGAGCC
* * * * *
32452212 TTAACTCACCTCTCGTAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAAATACCTCGGTG
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAAAAATTGAAAAATACCTCAGCG
*
32452277 TGTGACCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
66 TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
32452324 TGTTTTGGAA
Statistics
Matches: 222, Mismatches: 42, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
155 135 0.61
160 33 0.15
161 45 0.20
162 9 0.04
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (155 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAAAAATTGAAAAATACCTCAGCG
TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAA
AATACCTCGGCATGTAACCCGAGCC
Found at i:32460769 original size:4 final size:4
Alignment explanation
Indices: 32460735--32460759 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
32460725 ATGTACATGC
32460735 AATG AATG AATG AATG AATG AATG A
1 AATG AATG AATG AATG AATG AATG A
32460760 CAAATGAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AATG
Found at i:32460780 original size:22 final size:22
Alignment explanation
Indices: 32460739--32460793 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
32460729 ACATGCAATG
* *
32460739 AATGAATGAATGAATGAATGACA
1 AATGAATG-TTGAATAAATGACA
*
32460762 AATGAATGTTGAATAAATGACG
1 AATGAATGTTGAATAAATGACA
32460784 AATGAATGTT
1 AATGAATGTT
32460794 AGTCATGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 21 0.72
23 8 0.28
ACGTcount: A:0.47, C:0.04, G:0.22, T:0.27
Consensus pattern (22 bp):
AATGAATGTTGAATAAATGACA
Found at i:32464725 original size:25 final size:25
Alignment explanation
Indices: 32464697--32464761 Score: 85
Period size: 25 Copynumber: 2.6 Consensus size: 25
32464687 AGGTGTATAC
* *
32464697 ATAGTATTAAAAATATGTACATAAT
1 ATAGTATTAAAAATATATACATAAG
*
32464722 ATAGCATTAAAAATATATACATAAG
1 ATAGTATTAAAAATATATACATAAG
*
32464747 ATAATATGTAAAAAT
1 ATAGTAT-TAAAAAT
32464762 GTAATATAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
25 27 0.79
26 7 0.21
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.32
Consensus pattern (25 bp):
ATAGTATTAAAAATATATACATAAG
Found at i:32464788 original size:70 final size:69
Alignment explanation
Indices: 32464639--32464794 Score: 167
Period size: 70 Copynumber: 2.2 Consensus size: 69
32464629 ATGATATCTG
* * *
32464639 AATATATACATATAT-GTATTAAAATATATACGTAATAATAGGAATAAAAGGTGTATACATAGTA
1 AATATATACATATATAGCATTAAAATATATACATAATAATAGG-ATAAAAGATGTATACATAGTA
32464703 TTAAA
65 TTAAA
* * *
32464708 AATATGTACATAATATAGCATTAAAAATATATACATAAGATAATATG-TAAAA-ATGTA-ATATA
1 AATATATACAT-ATATAGCATT-AAAATATATACAT-A-ATAATAGGATAAAAGATGTATACATA
*
32464770 GTATTAGA
62 GTATTAAA
32464778 AATATATACATTATATA
1 AATATATACA-TATATA
32464795 TATAAAATAC
Statistics
Matches: 73, Mismatches: 8, Indels: 11
0.79 0.09 0.12
Matches are distributed among these distances:
69 10 0.14
70 29 0.40
71 9 0.12
72 17 0.23
73 1 0.01
74 7 0.10
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.34
Consensus pattern (69 bp):
AATATATACATATATAGCATTAAAATATATACATAATAATAGGATAAAAGATGTATACATAGTAT
TAAA
Found at i:32465648 original size:37 final size:37
Alignment explanation
Indices: 32465572--32465649 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
32465562 CCAACCCCAT
* * *
32465572 CCCACTAACTTAATAATCCAAGCCCAACATAGACCAA
1 CCCACTAACTTAATAATCCAAACCCAACACAAACCAA
* * *
32465609 CCCACTAACTTAATATTTCAAACCCAACACAAACTAA
1 CCCACTAACTTAATAATCCAAACCCAACACAAACCAA
32465646 CCCA
1 CCCA
32465650 TCTCACTAAC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.44, C:0.36, G:0.03, T:0.18
Consensus pattern (37 bp):
CCCACTAACTTAATAATCCAAACCCAACACAAACCAA
Found at i:32465689 original size:40 final size:41
Alignment explanation
Indices: 32465611--32465689 Score: 115
Period size: 40 Copynumber: 1.9 Consensus size: 41
32465601 TAGACCAACC
* *
32465611 CACTAACTTAATATTTCAAACCCAACACAAACTAACCCATCT
1 CACTAACTTAACATTTC-AACCAAACACAAACTAACCCATCT
*
32465653 CACTAACTTAACATTTC-ACCAAACACAAATTAACCCA
1 CACTAACTTAACATTTCAACCAAACACAAACTAACCCA
32465690 CAACAAACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 18 0.53
42 16 0.47
ACGTcount: A:0.44, C:0.33, G:0.00, T:0.23
Consensus pattern (41 bp):
CACTAACTTAACATTTCAACCAAACACAAACTAACCCATCT
Found at i:32466307 original size:30 final size:30
Alignment explanation
Indices: 32466255--32466395 Score: 103
Period size: 30 Copynumber: 4.7 Consensus size: 30
32466245 TTTTTAAAAA
* *
32466255 TTTA-GGGTC-AAATTATAATTTAAAGAAAT
1 TTTAGGGGTCAAAATGA-AATTTAAAGAAAG
** * *
32466284 TTTAGGGGTTGAAGTGAAATTTAAATAAAG
1 TTTAGGGGTCAAAATGAAATTTAAAGAAAG
*
32466314 TTTAGGGGTCAAAATGAAATTT-AGGAAAGG
1 TTTAGGGGTCAAAATGAAATTTAAAGAAA-G
* * *
32466344 TTTAGGTGTCAGAAT-ACAATTT-ACGAAAAG
1 TTTAGGGGTCAAAATGA-AATTTAAAG-AAAG
* *
32466374 TTTAAGGGTCAAAATGCAATTT
1 TTTAGGGGTCAAAATGAAATTT
32466396 TTTTATTTTT
Statistics
Matches: 89, Mismatches: 17, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
29 9 0.10
30 73 0.82
31 7 0.08
ACGTcount: A:0.40, C:0.05, G:0.22, T:0.33
Consensus pattern (30 bp):
TTTAGGGGTCAAAATGAAATTTAAAGAAAG
Found at i:32467059 original size:27 final size:27
Alignment explanation
Indices: 32467029--32467101 Score: 83
Period size: 32 Copynumber: 2.5 Consensus size: 27
32467019 TGTCTTGGAT
32467029 TTGTTAGATATTGATTATGTTTCAAGC
1 TTGTTAGATATTGATTATGTTTCAAGC
*
32467056 TTGTTAGATATTGAATTTATTATGTTTTAAGC
1 TTGTTAGATATTG-----ATTATGTTTCAAGC
*
32467088 TTGTTGGATATTGA
1 TTGTTAGATATTGA
32467102 AATGATTGAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
27 14 0.36
32 25 0.64
ACGTcount: A:0.26, C:0.04, G:0.19, T:0.51
Consensus pattern (27 bp):
TTGTTAGATATTGATTATGTTTCAAGC
Found at i:32467081 original size:32 final size:32
Alignment explanation
Indices: 32467042--32467102 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
32467032 TTAGATATTG
32467042 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
1 ATTATGTTTCAAGCTTGTTAGATATTGAATTT
* *
32467074 ATTATGTTTTAAGCTTGTTGGATATTGAA
1 ATTATGTTTCAAGCTTGTTAGATATTGAA
32467103 ATGATTGACA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.05, G:0.18, T:0.49
Consensus pattern (32 bp):
ATTATGTTTCAAGCTTGTTAGATATTGAATTT
Found at i:32467821 original size:34 final size:34
Alignment explanation
Indices: 32467778--32467846 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
32467768 AAATGCTCAA
32467778 GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
1 GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
32467812 GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
1 GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
32467846 G
1 G
32467847 TGAACAACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.06, G:0.25, T:0.35
Consensus pattern (34 bp):
GAAAGTTTCGTTGATGAACAAATTAAATTTGTGG
Found at i:32468593 original size:14 final size:14
Alignment explanation
Indices: 32468556--32468586 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32468546 CCAGAAAAGT
32468556 AAATCATTTTCCAG
1 AAATCATTTTCCAG
*
32468570 AAATCATTTTCCCG
1 AAATCATTTTCCAG
32468584 AAA
1 AAA
32468587 ATATTTTACT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32
Consensus pattern (14 bp):
AAATCATTTTCCAG
Found at i:32469104 original size:11 final size:12
Alignment explanation
Indices: 32469080--32469134 Score: 51
Period size: 11 Copynumber: 4.6 Consensus size: 12
32469070 ATCAATTTCA
32469080 ATTAAATAAATT
1 ATTAAATAAATT
32469092 ATTAAAT-AATT
1 ATTAAATAAATT
* *
32469103 ATAAAATTTAAAGT
1 ATTAAA--TAAATT
32469117 ATTAAA-AAATT
1 ATTAAATAAATT
*
32469128 ATAAAAT
1 ATTAAAT
32469135 TTAGTTCAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
11 18 0.53
12 7 0.21
13 1 0.03
14 8 0.24
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (12 bp):
ATTAAATAAATT
Found at i:32469114 original size:25 final size:25
Alignment explanation
Indices: 32469086--32469137 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
32469076 TTCAATTAAA
* *
32469086 TAAATTATTAAATAATTATAAAATT
1 TAAAGTATTAAAAAATTATAAAATT
32469111 TAAAGTATTAAAAAATTATAAAATT
1 TAAAGTATTAAAAAATTATAAAATT
32469136 TA
1 TA
32469138 GTTCAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (25 bp):
TAAAGTATTAAAAAATTATAAAATT
Found at i:32470239 original size:30 final size:30
Alignment explanation
Indices: 32470203--32470265 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
32470193 ACTTAATAAG
32470203 CAAATGTCTCTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
*
32470233 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTCTAAAATAATAACAAAATTAA
32470263 CAA
1 CAA
32470266 TAAAATAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAATTAA
Found at i:32470677 original size:10 final size:9
Alignment explanation
Indices: 32470662--32470812 Score: 57
Period size: 9 Copynumber: 16.8 Consensus size: 9
32470652 AGATTATTAT
32470662 TATAAATATA
1 TATAAA-ATA
32470672 TATAAAATA
1 TATAAAATA
**
32470681 T-TAATTTA
1 TATAAAATA
32470689 TA-AAAATA
1 TATAAAATA
*
32470697 GA-AAAATA
1 TATAAAATA
*
32470705 TATACAAT-
1 TATAAAATA
*
32470713 TA-AAAAAA
1 TATAAAATA
32470721 TATAAAA-A
1 TATAAAATA
*
32470729 GCGTATAATAT-
1 ---TATAAAATA
*
32470740 TTTGAAAAATA
1 TAT-A-AAATA
*
32470751 TATAAAAATC
1 TAT-AAAATA
**
32470761 TATAATCTA
1 TATAAAATA
*
32470770 TATAAAATTT
1 TATAAAA-TA
32470780 TATAAAAT-
1 TATAAAATA
32470788 TATAAAATA
1 TATAAAATA
* *
32470797 AATAAAAAA
1 TATAAAATA
32470806 TATAAAA
1 TATAAAA
32470813 GAACTAAAAA
Statistics
Matches: 104, Mismatches: 24, Indels: 27
0.67 0.15 0.17
Matches are distributed among these distances:
7 3 0.03
8 33 0.32
9 35 0.34
10 24 0.23
11 9 0.09
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.33
Consensus pattern (9 bp):
TATAAAATA
Found at i:32470776 original size:29 final size:29
Alignment explanation
Indices: 32470713--32470812 Score: 82
Period size: 30 Copynumber: 3.5 Consensus size: 29
32470703 TATATACAAT
* * *
32470713 TAAAAAAATATAAAAAGCGTATAATAT-TT
1 TAAAAATATATAAAAATC-TATAATATATA
*
32470742 TGAAAAATATATAAAAATCTATAATCTATA
1 T-AAAAATATATAAAAATCTATAATATATA
* * * *
32470772 TAAAATTTTAT-AAAAT-TATAAAATAAA
1 TAAAAATATATAAAAATCTATAATATATA
32470799 TAAAAA-ATATAAAA
1 TAAAAATATATAAAA
32470813 GAACTAAAAA
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
26 3 0.05
27 16 0.28
28 5 0.09
29 16 0.28
30 17 0.30
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.32
Consensus pattern (29 bp):
TAAAAATATATAAAAATCTATAATATATA
Found at i:32470804 original size:18 final size:18
Alignment explanation
Indices: 32470783--32470822 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32470773 AAAATTTTAT
* *
32470783 AAAATTATAAAATAAATA
1 AAAAATATAAAAGAAATA
*
32470801 AAAAATATAAAAGAACTA
1 AAAAATATAAAAGAAATA
32470819 AAAA
1 AAAA
32470823 GCACATCAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.75, C:0.03, G:0.03, T:0.20
Consensus pattern (18 bp):
AAAAATATAAAAGAAATA
Found at i:32470962 original size:23 final size:23
Alignment explanation
Indices: 32470908--32470963 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
32470898 TCTTAATGTG
**
32470908 ATTTTTTATATTTTTATTAATTTA
1 ATTTTTT-TATTTTTATTAAAATA
*
32470932 ATTATTTTATTTTT-TTAAAATA
1 ATTTTTTTATTTTTATTAAAATA
32470954 TATTTTTTTA
1 -ATTTTTTTA
32470964 ATTTCAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 6 0.22
23 15 0.56
24 6 0.22
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (23 bp):
ATTTTTTTATTTTTATTAAAATA
Found at i:32474153 original size:28 final size:27
Alignment explanation
Indices: 32474122--32474195 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 27
32474112 AATTTATATA
32474122 TTTATAATTTTAAAAATTAAATTAAATT
1 TTTATAATTTTAAAAATT-AATTAAATT
* ** **
32474150 TTTAATATTTTTAAATGTTAATTTTATT
1 TTT-ATAATTTTAAAAATTAATTAAATT
32474178 TTTATTAA-TTTAAAAATT
1 TTTA-TAATTTTAAAAATT
32474196 TTCCATTTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
27 9 0.25
28 15 0.42
29 12 0.33
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (27 bp):
TTTATAATTTTAAAAATTAATTAAATT
Found at i:32474194 original size:29 final size:27
Alignment explanation
Indices: 32474111--32474196 Score: 66
Period size: 28 Copynumber: 3.0 Consensus size: 27
32474101 ATAATTTTAA
*
32474111 TAATTTATATATTTATAATTTTAAAAATT
1 TAATTT-TATTTTTATAA-TTTAAAAATT
* ** **
32474140 AAATTAAATTTTTA-ATATTTTTAAATGT
1 TAATTTTATTTTTATA-ATTTAAAAAT-T
32474168 TAATTTTATTTTTATTAATTTAAAAATT
1 TAATTTTATTTTTA-TAATTTAAAAATT
32474196 T
1 T
32474197 TCCATTTTAG
Statistics
Matches: 42, Mismatches: 11, Indels: 9
0.68 0.18 0.15
Matches are distributed among these distances:
27 8 0.19
28 21 0.50
29 12 0.29
30 1 0.02
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (27 bp):
TAATTTTATTTTTATAATTTAAAAATT
Found at i:32480691 original size:25 final size:25
Alignment explanation
Indices: 32480663--32480743 Score: 76
Period size: 25 Copynumber: 3.2 Consensus size: 25
32480653 TAAAGCTCAA
*
32480663 GAGAGCCATTAATCGAGAAGCTTAT
1 GAGAGCCATTAATCGGGAAGCTTAT
* * *
32480688 GAGAGCCA-AATATTGGGAAGCTCAT
1 GAGAGCCATTA-ATCGGGAAGCTTAT
*
32480713 GAGAGCCATATAA-CGGGATGCTTAT
1 GAGAGCCAT-TAATCGGGAAGCTTAT
*
32480738 AAGAGC
1 GAGAGC
32480744 TAAATAATGG
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
24 1 0.02
25 41 0.93
26 1 0.02
27 1 0.02
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.21
Consensus pattern (25 bp):
GAGAGCCATTAATCGGGAAGCTTAT
Found at i:32480717 original size:50 final size:50
Alignment explanation
Indices: 32480655--32480755 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
32480645 CATAAATGTA
* *
32480655 AAGCTCAAGAGAGCCAT-TAATCGAGAAGCTTATGAGAGCCAAATATTGGG
1 AAGCTCAAGAGAGCCATATAA-CGAGAAGCTTATAAGAGCCAAATAATGGG
* * * *
32480705 AAGCTCATGAGAGCCATATAACGGGATGCTTATAAGAGCTAAATAATGGG
1 AAGCTCAAGAGAGCCATATAACGAGAAGCTTATAAGAGCCAAATAATGGG
32480755 A
1 A
32480756 TGCTTATAAG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
50 41 0.93
51 3 0.07
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.21
Consensus pattern (50 bp):
AAGCTCAAGAGAGCCATATAACGAGAAGCTTATAAGAGCCAAATAATGGG
Done.