Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 105 of 290
Found at i:32480750 original size:25 final size:25
Alignment explanation
Indices: 32480722--32480780 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
32480712 TGAGAGCCAT
32480722 ATAACGGGATGCTTATAAGAGCTAA
1 ATAACGGGATGCTTATAAGAGCTAA
*
32480747 ATAATGGGATGCTTATAAGAGCTAA
1 ATAACGGGATGCTTATAAGAGCTAA
32480772 ATAACGGGA
1 ATAACGGGA
32480781 CGCTCTTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.41, C:0.10, G:0.25, T:0.24
Consensus pattern (25 bp):
ATAACGGGATGCTTATAAGAGCTAA
Found at i:32480768 original size:50 final size:50
Alignment explanation
Indices: 32480655--32480780 Score: 130
Period size: 50 Copynumber: 2.5 Consensus size: 50
32480645 CATAAATGTA
* * *
32480655 AAGCTCA-AGAGAGCCAT-TAATCGAGAAGCTTATGAGAGCCAAATATTGGG
1 AAGCTCATA-AGAGCCATATAA-CGGGAAGCTTATAAGAGCCAAATAATGGG
* * *
32480705 AAGCTCATGAGAGCCATATAACGGGATGCTTATAAGAGCTAAATAATGGG
1 AAGCTCATAAGAGCCATATAACGGGAAGCTTATAAGAGCCAAATAATGGG
* * * *
32480755 ATGCTTATAAGAGCTAAATAACGGGA
1 AAGCTCATAAGAGCCATATAACGGGA
32480781 CGCTCTTGTG
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
50 60 0.95
51 3 0.05
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.21
Consensus pattern (50 bp):
AAGCTCATAAGAGCCATATAACGGGAAGCTTATAAGAGCCAAATAATGGG
Found at i:32486389 original size:39 final size:39
Alignment explanation
Indices: 32486344--32486420 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
32486334 TGAAAAATGA
32486344 GTTCTTGTATTGTTTGGAGGGTAGGAGACCAAATGATGG
1 GTTCTTGTATTGTTTGGAGGGTAGGAGACCAAATGATGG
*
32486383 GTTCTTGTATTGTTTGGAGGGTTGGAGACCAAATGATG
1 GTTCTTGTATTGTTTGGAGGGTAGGAGACCAAATGATG
32486421 TAAGCATAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.22, C:0.08, G:0.35, T:0.35
Consensus pattern (39 bp):
GTTCTTGTATTGTTTGGAGGGTAGGAGACCAAATGATGG
Found at i:32489953 original size:42 final size:41
Alignment explanation
Indices: 32489876--32489960 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
32489866 AAAAAACACT
*
32489876 TTTGGTGAGAAGCTAAAATTTTCGTCTTATCAAAAAAGTAC
1 TTTGGTGAGAAGCTAAAATTTTCATCTTATCAAAAAAGTAC
32489917 TTTGGTGAGAAGCTAAAATTTTCATCTTATCAAAAAAGTAC
1 TTTGGTGAGAAGCTAAAATTTTCATCTTATCAAAAAAGTAC
32489958 TTT
1 TTT
32489961 TGGGCCAATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (41 bp):
TTTGGTGAGAAGCTAAAATTTTCATCTTATCAAAAAAGTAC
Found at i:32490937 original size:22 final size:22
Alignment explanation
Indices: 32490895--32490937 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32490885 CATAAAAAGG
*
32490895 GGAGGAGTTTGAATGGCATTTA
1 GGAGGAGTTTGAAGGGCATTTA
32490917 GGAGGAGTTT-AAGGGCTATTT
1 GGAGGAGTTTGAAGGGC-ATTT
32490938 TGAATTTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.26, C:0.05, G:0.37, T:0.33
Consensus pattern (22 bp):
GGAGGAGTTTGAAGGGCATTTA
Found at i:32492472 original size:16 final size:16
Alignment explanation
Indices: 32492415--32492472 Score: 59
Period size: 17 Copynumber: 3.8 Consensus size: 16
32492405 ATTTCCATGA
32492415 ATTTTTATTATATATTC
1 ATTTTTATTATAT-TTC
* *
32492432 ATTTTAATTCT-TTTC
1 ATTTTTATTATATTTC
*
32492447 -TTTTT-GTATATTTC
1 ATTTTTATTATATTTC
32492461 ATTTTTATTATA
1 ATTTTTATTATA
32492473 ATTATTGACA
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
13 2 0.06
14 8 0.25
15 8 0.25
16 5 0.16
17 9 0.28
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (16 bp):
ATTTTTATTATATTTC
Found at i:32495206 original size:49 final size:48
Alignment explanation
Indices: 32495129--32495322 Score: 226
Period size: 49 Copynumber: 4.0 Consensus size: 48
32495119 ACTATTGTGA
* *
32495129 GGTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-ATT
* * ** * *
32495178 GGTCGCATGTGTATTACTAAGTGCAGGCTACTACGTGTATTAGATGGTGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AT-T
* *
32495228 GGTCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAGACTATT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TATT
** * *
32495277 GGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
32495323 GCTTCGGCTA
Statistics
Matches: 120, Mismatches: 23, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
48 2 0.02
49 78 0.65
50 39 0.32
51 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (48 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATATT
Found at i:32495296 original size:99 final size:99
Alignment explanation
Indices: 32495125--32495309 Score: 300
Period size: 99 Copynumber: 1.9 Consensus size: 99
32495115 ATGAACTATT
*
32495125 GTGAGGTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGT
1 GTGAGGTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGT
*
32495190 ATTACTAAGTGCAGGCTACTACGTGTATTAGATG
66 AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
* * * *
32495224 GTGAGGTCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTACCAGACT-ATTGGTTGCATGTG
1 GTGAGGTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGA-TAATTGGTCGCATGTG
32495288 TAGTACTAAGTGCAGGCTACTA
65 TAGTACTAAGTGCAGGCTACTA
32495310 TGCGTACCAG
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
99 78 0.99
100 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.30
Consensus pattern (99 bp):
GTGAGGTCACATGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATTGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTACGTGTATTAGATG
Found at i:32497606 original size:13 final size:13
Alignment explanation
Indices: 32497588--32497643 Score: 75
Period size: 13 Copynumber: 4.5 Consensus size: 13
32497578 TAGATTTTTC
32497588 CTAAATATTATCA
1 CTAAATATTATCA
32497601 CTAAATAATT-T--
1 CTAAAT-ATTATCA
32497612 -TAAATATTATCA
1 CTAAATATTATCA
32497624 CTAAATATTATCA
1 CTAAATATTATCA
32497637 CTAAATA
1 CTAAATA
32497644 ATTCAAAATT
Statistics
Matches: 38, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
9 3 0.08
10 6 0.16
13 26 0.68
14 3 0.08
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:32504837 original size:5 final size:5
Alignment explanation
Indices: 32504829--32504864 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
32504819 GGAAATACGA
32504829 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT A
32504865 TATTCTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:32505735 original size:13 final size:13
Alignment explanation
Indices: 32505717--32505782 Score: 56
Period size: 13 Copynumber: 5.5 Consensus size: 13
32505707 TAGATTTTTC
32505717 CTAAATATTATCA
1 CTAAATATTATCA
32505730 CTAAATAATT-T--
1 CTAAAT-ATTATCA
32505741 -TAAATATTATCA
1 CTAAATATTATCA
*
32505753 CTAAATA--AT-T
1 CTAAATATTATCA
*
32505763 CTAGATATTATCA
1 CTAAATATTATCA
32505776 CTAAATA
1 CTAAATA
32505783 ATTCAAAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 16
0.67 0.07 0.26
Matches are distributed among these distances:
9 3 0.07
10 12 0.29
11 2 0.05
12 2 0.05
13 19 0.46
14 3 0.07
ACGTcount: A:0.47, C:0.12, G:0.02, T:0.39
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:32505745 original size:23 final size:23
Alignment explanation
Indices: 32505717--32505791 Score: 123
Period size: 23 Copynumber: 3.3 Consensus size: 23
32505707 TAGATTTTTC
32505717 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
32505740 TTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
32505763 CTAGATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
*
32505786 CAAAAT
1 CTAAAT
32505792 TTTAAAATCA
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 47 1.00
ACGTcount: A:0.48, C:0.12, G:0.01, T:0.39
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:32508586 original size:727 final size:727
Alignment explanation
Indices: 32507191--32508633 Score: 2771
Period size: 727 Copynumber: 2.0 Consensus size: 727
32507181 GGTGGATTCA
32507191 TTGATAAAATGTCAATGGGAGTGCTTCTAACGCTCTGCCAAGAATAAAGATCGGTGTGGCATAGA
1 TTGATAAAATGTCAATGGGAGTGCTTCTAACGCTCTGCCAAGAATAAAGATCGGTGTGGCATAGA
*
32507256 AAGATGGATTTTACCTGTTGTTATAAGCATCCCACTATCTTTCATGGCGATGAAGTTACTAGATA
66 AAGATGGATTTTACCTGTTGTTATAAGCATCCCACTATCTTTCATGGCAATGAAGTTACTAGATA
32507321 TAGGATACTGGATCCATTTAGGTGTAGAAACTTTAGTTACAATGTTTTCAATCCCAAGCATGGAT
131 TAGGATACTGGATCCATTTAGGTGTAGAAACTTTAGTTACAATGTTTTCAATCCCAAGCATGGAT
32507386 CAAAAACTTGGTCCCTGAGAAAAATAAAGAGAAACATGGCGTATAGTAGTCGTTTGAGTTCAAAT
196 CAAAAACTTGGTCCCTGAGAAAAATAAAGAGAAACATGGCGTATAGTAGTCGTTTGAGTTCAAAT
32507451 TTGGTTTTAAAAGGAAACTTTGATAGTCCTTTATGTGGAAAGTATTTGGCTATATCATTTTTTTA
261 TTGGTTTTAAAAGGAAACTTTGATAGTCCTTTATGTGGAAAGTATTTGGCTATATCATTTTTTTA
32507516 TGGTTTACATGATGTATCGAAAGTAAGAGGAGTTAAGTCGCATTGTCAAGGCAGTGATTCGTCAC
326 TGGTTTACATGATGTATCGAAAGTAAGAGGAGTTAAGTCGCATTGTCAAGGCAGTGATTCGTCAC
32507581 CGTATGCTGATAGGAATGATCGCAATGCAGAATTTGCTGAGAGTAGTAATGAGAGCTCAAGTAGT
391 CGTATGCTGATAGGAATGATCGCAATGCAGAATTTGCTGAGAGTAGTAATGAGAGCTCAAGTAGT
*
32507646 CTGGGAGAAGAAGTGATAAATGTTAGTGGTGAAGAGGAAACACCTACCCTGGATGAGTTGAGGGA
456 CTGGGAGAAGAAGTGATAAATGTAAGTGGTGAAGAGGAAACACCTACCCTGGATGAGTTGAGGGA
32507711 ATTGGTGCACAAGGCAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGTATGATGTTTTAGGAAA
521 ATTGGTGCACAAGGCAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGTATGATGTTTTAGGAAA
32507776 AGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAACAAATGCTTGGAATCAT
586 AGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAACAAATGCTTGGAATCAT
32507841 GTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGAATTGCTAAAGAGACTGT
651 GTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGAATTGCTAAAGAGACTGT
32507906 TTTTCCAGCTGT
716 TTTTCCAGCTGT
32507918 TTGATAAAATGTCAATGGGAGTGCTT-TGAACGCTCTGCCAAGAATAAAGATCGGTGTGGCATAG
1 TTGATAAAATGTCAATGGGAGTGCTTCT-AACGCTCTGCCAAGAATAAAGATCGGTGTGGCATAG
*
32507982 AAAGATGGATTTTACTTGTTGTTATAAGCATCCCACTATCTTTCATGGCAATGAAGTTACTAGAT
65 AAAGATGGATTTTACCTGTTGTTATAAGCATCCCACTATCTTTCATGGCAATGAAGTTACTAGAT
32508047 ATAGGATACTGGATCCATTTAGGTGTAGAAACTTTAGTTACAATGTTTTCAATCCCAAGCATGGA
130 ATAGGATACTGGATCCATTTAGGTGTAGAAACTTTAGTTACAATGTTTTCAATCCCAAGCATGGA
32508112 TCAAAAACTTGGTCCCTGAGAAAAATAAAGAGAAACATGGCGTATAGTAGTCGTTTGAGTTCAAA
195 TCAAAAACTTGGTCCCTGAGAAAAATAAAGAGAAACATGGCGTATAGTAGTCGTTTGAGTTCAAA
* *
32508177 TTTGGTTTTAAAAGGAAACTTTGATAGTCCTTTGTGTGGAACGTATTTGGCTATATCATTTTTTT
260 TTTGGTTTTAAAAGGAAACTTTGATAGTCCTTTATGTGGAAAGTATTTGGCTATATCATTTTTTT
*
32508242 GTGGTTTACATGATGTATCGAAAGTAAGAGGAGTTAAGTCGCATTGTCAAGGCAGTGATTCGTCA
325 ATGGTTTACATGATGTATCGAAAGTAAGAGGAGTTAAGTCGCATTGTCAAGGCAGTGATTCGTCA
* * *
32508307 CCGTATGCTGATGGGAATGATTGCAATGCAGAATTTGCTGAGAGTAGTAATGAGAGCTCAGGTAG
390 CCGTATGCTGATAGGAATGATCGCAATGCAGAATTTGCTGAGAGTAGTAATGAGAGCTCAAGTAG
32508372 TCTGGGAGAAGAAGTGATAAATGTAAGTGGTGAAGAGGAAACACCTACCCTGGATGAGTTGAGGG
455 TCTGGGAGAAGAAGTGATAAATGTAAGTGGTGAAGAGGAAACACCTACCCTGGATGAGTTGAGGG
32508437 AATTGGTGCACAAGGCAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGTATGATGTTTTAGGAA
520 AATTGGTGCACAAGGCAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGTATGATGTTTTAGGAA
32508502 AAGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAACAAATGCTTGGAATCA
585 AAGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAACAAATGCTTGGAATCA
* *
32508567 TGTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGTATTGCTAAAGAGGCTG
650 TGTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGAATTGCTAAAGAGACTG
32508632 TT
715 TT
32508634 CAAAAGGCAA
Statistics
Matches: 704, Mismatches: 11, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
726 1 0.00
727 703 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (727 bp):
TTGATAAAATGTCAATGGGAGTGCTTCTAACGCTCTGCCAAGAATAAAGATCGGTGTGGCATAGA
AAGATGGATTTTACCTGTTGTTATAAGCATCCCACTATCTTTCATGGCAATGAAGTTACTAGATA
TAGGATACTGGATCCATTTAGGTGTAGAAACTTTAGTTACAATGTTTTCAATCCCAAGCATGGAT
CAAAAACTTGGTCCCTGAGAAAAATAAAGAGAAACATGGCGTATAGTAGTCGTTTGAGTTCAAAT
TTGGTTTTAAAAGGAAACTTTGATAGTCCTTTATGTGGAAAGTATTTGGCTATATCATTTTTTTA
TGGTTTACATGATGTATCGAAAGTAAGAGGAGTTAAGTCGCATTGTCAAGGCAGTGATTCGTCAC
CGTATGCTGATAGGAATGATCGCAATGCAGAATTTGCTGAGAGTAGTAATGAGAGCTCAAGTAGT
CTGGGAGAAGAAGTGATAAATGTAAGTGGTGAAGAGGAAACACCTACCCTGGATGAGTTGAGGGA
ATTGGTGCACAAGGCAATGGAGGAATTGAAAGTAGCTCGTCTTAACAGTATGATGTTTTAGGAAA
AGGCTCAGGGAATATCAGAAGCTGCAATAGCCTCGAGGGACAAAGCAACAAATGCTTGGAATCAT
GTTAATAGCAAGCTTAATGTGATGCAAGGCATTGCCAATGAAGAGTGAATTGCTAAAGAGACTGT
TTTTCCAGCTGT
Found at i:32517108 original size:5 final size:5
Alignment explanation
Indices: 32517098--32517131 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
32517088 TAAAATAATT
*
32517098 TTTTA TTTTA TTTTA TTTTC TTTTAA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTT-A TTTTA TTT
32517132 CATCCTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:32517126 original size:16 final size:15
Alignment explanation
Indices: 32517098--32517131 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
32517088 TAAAATAATT
32517098 TTTTATTTTATTTTA
1 TTTTATTTTATTTTA
*
32517113 TTTTCTTTTAATTTTA
1 TTTTATTTT-ATTTTA
32517129 TTT
1 TTT
32517132 CATCCTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTATTTTATTTTA
Found at i:32542757 original size:48 final size:48
Alignment explanation
Indices: 32542701--32542839 Score: 197
Period size: 48 Copynumber: 2.9 Consensus size: 48
32542691 ACATAGTAAT
* * * ** *
32542701 ATGCCAATGCCATATTCCAGATATGGTCTTACATGGGATCACATGTTG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCG
* *
32542749 ATGCCAATGCCATGTCCCAGACATGGTCTGACATGGGATCTCAAATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCG
*
32542797 ATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA
32542840 CATAACTCTA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 80 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (48 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCG
Found at i:32551658 original size:25 final size:25
Alignment explanation
Indices: 32551623--32551673 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
32551613 CTTATCAACA
*
32551623 ATTTTTAGGGAATTTAAGTCCTCAT
1 ATTTTTAGGGAATTCAAGTCCTCAT
*
32551648 ATTTTTGGGGAATTCAAGTCCTCAT
1 ATTTTTAGGGAATTCAAGTCCTCAT
32551673 A
1 A
32551674 CATTCCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.41
Consensus pattern (25 bp):
ATTTTTAGGGAATTCAAGTCCTCAT
Found at i:32554219 original size:42 final size:42
Alignment explanation
Indices: 32554120--32554275 Score: 172
Period size: 43 Copynumber: 3.6 Consensus size: 42
32554110 GCTCGTAGAG
* * *
32554120 TGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATTATCGA
1 TGCCAACGTCCCAGACATGGTCTTACACGAAATCAA-TATCGA
* *
32554163 TGCC-ACTGTCCCAGACAAGGTCTTACACGAAATC-GTATACGA
1 TGCCAAC-GTCCCAGACATGGTCTTACACGAAATCAATAT-CGA
* *
32554205 TGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCGA
1 TGCCAACGTCCCAGACATGGTCTTACACG-AAATCA-ATATCGA
* *
32554249 TACCAACGTCCCAGACGTGGTCTTACA
1 TGCCAACGTCCCAGACATGGTCTTACA
32554276 TGATAACACA
Statistics
Matches: 95, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
41 3 0.03
42 30 0.32
43 33 0.35
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (42 bp):
TGCCAACGTCCCAGACATGGTCTTACACGAAATCAATATCGA
Found at i:32580043 original size:42 final size:44
Alignment explanation
Indices: 32579935--32580133 Score: 199
Period size: 44 Copynumber: 4.6 Consensus size: 44
32579925 AGCTCGTACA
* * * * *
32579935 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCA-ATTATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACA-AATCG
* * * * * ** *
32579978 ATGACACTGTCCCAGATAGGGTCTTAGACG-AAATCGTATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
32580020 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
* *
32580064 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAAAATTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
* * *
32580108 ATGCCAATATCCCAGACGTGGCCTTA
1 ATGCCAATGTCCCAGACATGGTCTTA
32580134 AATGATAACA
Statistics
Matches: 129, Mismatches: 23, Indels: 7
0.81 0.14 0.04
Matches are distributed among these distances:
42 26 0.20
43 35 0.27
44 68 0.53
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCACAAATCG
Found at i:32582356 original size:30 final size:30
Alignment explanation
Indices: 32582282--32582344 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
32582272 CAATTTTCGT
* * * *
32582282 AAGGAAGCATTTGTAGTTATCTCTATTAAA
1 AAGGAAGCCTTTGTGGTGATCTCTAATAAA
*
32582312 AAGGAAGCCCTTGTGGTGATCTCTAATAAA
1 AAGGAAGCCTTTGTGGTGATCTCTAATAAA
32582342 AAG
1 AAG
32582345 AATGCTTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (30 bp):
AAGGAAGCCTTTGTGGTGATCTCTAATAAA
Found at i:32583353 original size:33 final size:33
Alignment explanation
Indices: 32583302--32583376 Score: 123
Period size: 33 Copynumber: 2.3 Consensus size: 33
32583292 ATGGAATCAA
* *
32583302 AGAACAGAGTAAGAACAAATGACCATCCTATCT
1 AGAAAAGATTAAGAACAAATGACCATCCTATCT
*
32583335 ATAAAAGATTAAGAACAAATGACCATCCTATCT
1 AGAAAAGATTAAGAACAAATGACCATCCTATCT
32583368 AGAAAAGAT
1 AGAAAAGAT
32583377 GTCCTACTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.49, C:0.17, G:0.13, T:0.20
Consensus pattern (33 bp):
AGAAAAGATTAAGAACAAATGACCATCCTATCT
Found at i:32586491 original size:48 final size:47
Alignment explanation
Indices: 32586418--32586554 Score: 202
Period size: 48 Copynumber: 2.9 Consensus size: 47
32586408 CTCGCACTTT
32586418 AAGTGCCAATATCATGGCCTGAAGCCAAATCAATGAAGCTCACACCCG
1 AAGTGCCAATATCATGGCC-GAAGCCAAATCAATGAAGCTCACACCCG
** **
32586466 GGGTGCCAATATCATGGCTCGAAGCCAAATCAATGAAGCTCGTACCCG
1 AAGTGCCAATATCATGGC-CGAAGCCAAATCAATGAAGCTCACACCCG
*
32586514 AAGTGCCAATATCATGGCCCAAAGCCAAATCAATGAAGCTC
1 AAGTGCCAATATCATGG-CCGAAGCCAAATCAATGAAGCTC
32586555 CTAATGACAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
48 78 0.98
49 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.20, T:0.18
Consensus pattern (47 bp):
AAGTGCCAATATCATGGCCGAAGCCAAATCAATGAAGCTCACACCCG
Found at i:32591562 original size:48 final size:48
Alignment explanation
Indices: 32591506--32591700 Score: 259
Period size: 48 Copynumber: 4.1 Consensus size: 48
32591496 GCTCGGGAGT
*
32591506 CTCGCACCCTAAGTGCCAATATCATGG-CCAGAAGCCAAATCAATAAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCA-AAGCCAAATCAATAAAG
* * *
32591554 CTCGCACCCGAAGTGCCAATATCATGGCTCGAAGCCAAATCAATGAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAG
* * * * *
32591602 CCCGTACCCGAAGTGCAAATGTCATGGCCCAAATCCAAATCAATAAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAG
* *
32591650 CTCGCACCCAAAGCT-CCAATATCATGGCCCAAAGCCAAATCAATGAAG
1 CTCGCACCCGAAG-TGCCAATATCATGGCCCAAAGCCAAATCAATAAAG
32591698 CTC
1 CTC
32591701 CTAATGACAT
Statistics
Matches: 126, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
48 124 0.98
49 2 0.02
ACGTcount: A:0.36, C:0.31, G:0.17, T:0.16
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCAAAGCCAAATCAATAAAG
Found at i:32601819 original size:40 final size:40
Alignment explanation
Indices: 32601634--32601819 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
32601624 GCTCCTCGTT
* * *
32601634 CAAATGCCTTTGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
32601674 GAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
32601714 CAAATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * * *
32601754 CAAAGGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
32601795 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
32601820 CATCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 3 0.02
40 107 0.88
41 12 0.10
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:32612511 original size:6 final size:6
Alignment explanation
Indices: 32612488--32612540 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
32612478 CAGTCAGAAA
* * * * *
32612488 CAGATA CAGTTT CAGATT CAGATT CAAATC CAGATT CAGTTT CAGATT
1 CAGATT CAGATT CAGATT CAGATT CAGATT CAGATT CAGATT CAGATT
32612536 ACAGA
1 -CAGA
32612541 AACAGTTATG
Statistics
Matches: 37, Mismatches: 9, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
6 33 0.89
7 4 0.11
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (6 bp):
CAGATT
Found at i:32613386 original size:26 final size:27
Alignment explanation
Indices: 32613357--32613412 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 27
32613347 TCAATTGGAG
32613357 AAAAAG-GACTAAATCGCGTAAAATGC
1 AAAAAGTGACTAAATCGCGTAAAATGC
*
32613383 -AAAAGTTACTAAATCGCGTAAAATGC
1 AAAAAGTGACTAAATCGCGTAAAATGC
32613409 AAAA
1 AAAA
32613413 GTTGCATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 5 0.19
26 19 0.70
27 3 0.11
ACGTcount: A:0.52, C:0.14, G:0.16, T:0.18
Consensus pattern (27 bp):
AAAAAGTGACTAAATCGCGTAAAATGC
Found at i:32613413 original size:26 final size:26
Alignment explanation
Indices: 32613364--32613415 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
32613354 GAGAAAAAGG
32613364 ACTAAATCGCGTAAAATGCAAAAGTT
1 ACTAAATCGCGTAAAATGCAAAAGTT
32613390 ACTAAATCGCGTAAAATGCAAAAGTT
1 ACTAAATCGCGTAAAATGCAAAAGTT
32613416 GCATTTTACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23
Consensus pattern (26 bp):
ACTAAATCGCGTAAAATGCAAAAGTT
Found at i:32619797 original size:34 final size:34
Alignment explanation
Indices: 32619759--32619826 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
32619749 AAAATAAAGT
* *
32619759 AAAATAAAATATTCGAATTCCCCCTAAATCCCAC
1 AAAATAAAAGATTCAAATTCCCCCTAAATCCCAC
32619793 AAAATAAAAGATTCAAATTCCCCCTAAATCCCAC
1 AAAATAAAAGATTCAAATTCCCCCTAAATCCCAC
32619827 TAATTCCACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.46, C:0.29, G:0.03, T:0.22
Consensus pattern (34 bp):
AAAATAAAAGATTCAAATTCCCCCTAAATCCCAC
Found at i:32621641 original size:84 final size:84
Alignment explanation
Indices: 32621494--32621649 Score: 197
Period size: 84 Copynumber: 1.9 Consensus size: 84
32621484 AGTACCACAC
**** * * * **
32621494 CAATGTCATATCCCAGATATGGTCTTACATGGGATCTCGTATCAATGCAATAGCCTAGCTATGGT
1 CAATGTCATATCCCAGATATGGTCTTACACAAAAACTCGTATCAATGCAATAACCCAAATATGGT
32621559 CTTACACGAAATATCATAT
66 CTTACACGAAATATCATAT
* *
32621578 CAATGTCATATCCCAGATATGGTCTTACACAAAAACTCGTAAT-GATGCCATAACCCAAATATGG
1 CAATGTCATATCCCAGATATGGTCTTACACAAAAACTCGT-ATCAATGCAATAACCCAAATATGG
32621642 TCTTACAC
65 TCTTACAC
32621650 ATAGTCTCGG
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
84 58 0.97
85 2 0.03
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (84 bp):
CAATGTCATATCCCAGATATGGTCTTACACAAAAACTCGTATCAATGCAATAACCCAAATATGGT
CTTACACGAAATATCATAT
Found at i:32640853 original size:46 final size:46
Alignment explanation
Indices: 32640801--32640890 Score: 144
Period size: 46 Copynumber: 2.0 Consensus size: 46
32640791 GAAGGAAATA
* *
32640801 AAAACCTAATATAATAGAGAAAATAAGTAAAACTAAAAATCTTAAT
1 AAAACCTAATATAATAAAGAAAATAAATAAAACTAAAAATCTTAAT
* *
32640847 AAAACCTTATATAATAAAGAAAATAAATAAAACTAAAACTCTTA
1 AAAACCTAATATAATAAAGAAAATAAATAAAACTAAAAATCTTA
32640891 TTGCAATAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.61, C:0.10, G:0.04, T:0.24
Consensus pattern (46 bp):
AAAACCTAATATAATAAAGAAAATAAATAAAACTAAAAATCTTAAT
Found at i:32641594 original size:31 final size:31
Alignment explanation
Indices: 32641556--32641616 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
32641546 ATTTGAGTAT
32641556 TTGTATTGGTTTTTATAAAAAATTTTATAAC
1 TTGTATTGGTTTTTATAAAAAATTTTATAAC
32641587 TTGTATTGGTTTTTATAAAAAATTTTATAA
1 TTGTATTGGTTTTTATAAAAAATTTTATAA
32641617 AAATTTTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.36, C:0.02, G:0.10, T:0.52
Consensus pattern (31 bp):
TTGTATTGGTTTTTATAAAAAATTTTATAAC
Found at i:32641620 original size:11 final size:12
Alignment explanation
Indices: 32641596--32641628 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
32641586 CTTGTATTGG
32641596 TTTTTATAAAAA
1 TTTTTATAAAAA
*
32641608 ATTTTATAAAAA
1 TTTTTATAAAAA
32641620 TTTTTATAA
1 TTTTTATAA
32641629 GATGCTACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTTATAAAAA
Found at i:32642219 original size:36 final size:36
Alignment explanation
Indices: 32642172--32642264 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
32642162 TATCACAATG
32642172 CCATAGCCCCGCTATGGTCTTTCAATTTATACGATC
1 CCATAGCCCCGCTATGGTCTTTCAATTTATACGATC
32642208 CCATAGCCCCGCTATGGTCTTTCAATTTATACGATC
1 CCATAGCCCCGCTATGGTCTTTCAATTTATACGATC
*
32642244 CCATAGCCCAGCTATGGTCTT
1 CCATAGCCCCGCTATGGTCTT
32642265 ACACGTATAC
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (36 bp):
CCATAGCCCCGCTATGGTCTTTCAATTTATACGATC
Found at i:32646161 original size:14 final size:14
Alignment explanation
Indices: 32646142--32646172 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32646132 ATATTTCATA
32646142 TATTTTAATAAAAT
1 TATTTTAATAAAAT
32646156 TATTTTAATAAAAT
1 TATTTTAATAAAAT
32646170 TAT
1 TAT
32646173 CTTGAAGTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTTAATAAAAT
Found at i:32646270 original size:16 final size:16
Alignment explanation
Indices: 32646249--32646279 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32646239 TTTAAATGAT
32646249 TTTTTTAAAATTTTTA
1 TTTTTTAAAATTTTTA
*
32646265 TTTTTTGAAATTTTT
1 TTTTTTAAAATTTTT
32646280 GAATTTTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
TTTTTTAAAATTTTTA
Found at i:32646327 original size:20 final size:18
Alignment explanation
Indices: 32646291--32646351 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
32646281 AATTTTATTC
* *
32646291 AATACTTTTAAAAATTTT
1 AATATTTTTCAAAATTTT
32646309 AATATTTTTCTACAAATTTAT
1 AATATTTTTC-A-AAATTT-T
*
32646330 AAT-TTTTTCAAAATTTA
1 AATATTTTTCAAAATTTT
32646347 AATAT
1 AATAT
32646352 ATATTATTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
17 3 0.08
18 15 0.42
19 2 0.06
20 12 0.33
21 4 0.11
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.51
Consensus pattern (18 bp):
AATATTTTTCAAAATTTT
Found at i:32647495 original size:18 final size:18
Alignment explanation
Indices: 32647458--32647497 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
32647448 TTAGGAATAC
**
32647458 TTTTGTCCCAAAAGTGTT
1 TTTTGTCCCAAAAGCATT
*
32647476 TTTTGTCCCCAAAGCATT
1 TTTTGTCCCAAAAGCATT
32647494 TTTT
1 TTTT
32647498 AGAAGCATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.20, G:0.12, T:0.47
Consensus pattern (18 bp):
TTTTGTCCCAAAAGCATT
Found at i:32651476 original size:17 final size:17
Alignment explanation
Indices: 32651444--32651492 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
32651434 CGCACATCTA
*
32651444 CGAGCTCATTCAAAGATG
1 CGAGCTCA-CCAAAGATG
*
32651462 CGAGCTCAGCAAAGATG
1 CGAGCTCACCAAAGATG
32651479 CGAAGCTCACCAAA
1 CG-AGCTCACCAAA
32651493 TTTGCAAGCT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.36
18 18 0.64
ACGTcount: A:0.37, C:0.27, G:0.22, T:0.14
Consensus pattern (17 bp):
CGAGCTCACCAAAGATG
Found at i:32652173 original size:26 final size:26
Alignment explanation
Indices: 32652144--32652194 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32652134 CTCATTTCCC
32652144 TTTTAAAATTTCTCATGTTATTTTTG
1 TTTTAAAATTTCTCATGTTATTTTTG
* * *
32652170 TTTTCATATTTCTCATTTTATTTTT
1 TTTTAAAATTTCTCATGTTATTTTT
32652195 AAATTTCTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.10, G:0.04, T:0.67
Consensus pattern (26 bp):
TTTTAAAATTTCTCATGTTATTTTTG
Found at i:32653836 original size:16 final size:16
Alignment explanation
Indices: 32653817--32653869 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
32653807 AATAGGACTA
32653817 TAATCGAATAGAGTTG
1 TAATCGAATAGAGTTG
* * *
32653833 TAATTGAATAGAGCTA
1 TAATCGAATAGAGTTG
* *
32653849 TAATGGAATAGAATTG
1 TAATCGAATAGAGTTG
32653865 TAATC
1 TAATC
32653870 AGTAATTCAA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.32
Consensus pattern (16 bp):
TAATCGAATAGAGTTG
Found at i:32653842 original size:32 final size:32
Alignment explanation
Indices: 32653806--32653868 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
32653796 CAATGTAACG
*
32653806 GAATAG-GACTATAATCGAATAGAGTTGTAATT
1 GAATAGAG-CTATAATCGAATAGAATTGTAATT
*
32653838 GAATAGAGCTATAATGGAATAGAATTGTAAT
1 GAATAGAGCTATAATCGAATAGAATTGTAAT
32653869 CAGTAATTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 27 0.96
33 1 0.04
ACGTcount: A:0.43, C:0.05, G:0.22, T:0.30
Consensus pattern (32 bp):
GAATAGAGCTATAATCGAATAGAATTGTAATT
Found at i:32661648 original size:40 final size:39
Alignment explanation
Indices: 32661588--32661669 Score: 137
Period size: 40 Copynumber: 2.1 Consensus size: 39
32661578 GTATATAGTT
* *
32661588 ACTGCATTTTACTCATAGGAATTAACAGTTATTCATTTA
1 ACTGCATTTTACTCAAAGGAATTAACAGTTATTCATTCA
32661627 ACTGCATTTTTACTCAAAGGAATTAACAGTTATTCATTCA
1 ACTGCA-TTTTACTCAAAGGAATTAACAGTTATTCATTCA
32661667 ACT
1 ACT
32661670 CTTTAAGCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
39 6 0.15
40 34 0.85
ACGTcount: A:0.34, C:0.17, G:0.10, T:0.39
Consensus pattern (39 bp):
ACTGCATTTTACTCAAAGGAATTAACAGTTATTCATTCA
Found at i:32662331 original size:19 final size:20
Alignment explanation
Indices: 32662307--32662346 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32662297 CTGTAACTTT
32662307 TTTTTA-ATTTAAAATTTAG
1 TTTTTATATTTAAAATTTAG
* *
32662326 TTTTTATATTTTAATTTTAG
1 TTTTTATATTTAAAATTTAG
32662346 T
1 T
32662347 AGATTAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (20 bp):
TTTTTATATTTAAAATTTAG
Found at i:32662442 original size:31 final size:31
Alignment explanation
Indices: 32662407--32662467 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
32662397 AATTTTTTCG
*
32662407 TTAAAGTTAACAGTGTTAAAGGTAGAATAAC
1 TTAAAGTTAACAGTGTCAAAGGTAGAATAAC
*
32662438 TTAAAGTTAACGGTGTCAAAGGTAGAATAA
1 TTAAAGTTAACAGTGTCAAAGGTAGAATAA
32662468 TTTTTAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.44, C:0.07, G:0.21, T:0.28
Consensus pattern (31 bp):
TTAAAGTTAACAGTGTCAAAGGTAGAATAAC
Found at i:32666662 original size:19 final size:19
Alignment explanation
Indices: 32666638--32666728 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
32666628 AATCATATCT
*
32666638 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
32666657 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
32666675 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
32666692 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
32666711 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
32666729 TGAAGATTTT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:32666696 original size:35 final size:37
Alignment explanation
Indices: 32666631--32666728 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
32666621 ATTACAAAAT
32666631 CATATC-T-TCTAAGATTGTATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
32666667 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
32666702 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
32666729 TGAAGATTTT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:32667594 original size:12 final size:12
Alignment explanation
Indices: 32667574--32667603 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32667564 TTAGTCTCTC
*
32667574 TCAACAAAAAAT
1 TCAAAAAAAAAT
32667586 TCAAAAAAAAAT
1 TCAAAAAAAAAT
32667598 TCAAAA
1 TCAAAA
32667604 TATTTATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (12 bp):
TCAAAAAAAAAT
Found at i:32667641 original size:18 final size:18
Alignment explanation
Indices: 32667620--32667696 Score: 59
Period size: 20 Copynumber: 4.2 Consensus size: 18
32667610 TAAAAATTTC
32667620 AAAATTTAT-ATTTTTAA
1 AAAATTTATAATTTTTAA
*
32667637 GAAAAATTATCAATTTTTAA
1 -AAAATTTAT-AATTTTTAA
* * *
32667657 AAAATTCTAAAATATATATA
1 AAAATT-TATAATTTTTA-A
*
32667677 AAAATTTA-AAATTTTAA
1 AAAATTTATAATTTTTAA
32667694 AAA
1 AAA
32667697 TTTTCTAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 9
0.73 0.12 0.14
Matches are distributed among these distances:
17 4 0.09
18 13 0.28
19 13 0.28
20 17 0.36
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (18 bp):
AAAATTTATAATTTTTAA
Found at i:32668416 original size:17 final size:16
Alignment explanation
Indices: 32668365--32668408 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
32668355 TTCATATTTT
*
32668365 AAATAAAAATTTTAAA
1 AAATAAAAATATTAAA
*
32668381 AAATAAAAAATATGAAAA
1 AAAT-AAAAATAT-TAAA
32668399 AAATAAAAAT
1 AAATAAAAAT
32668409 CCTTAAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 4 0.17
17 13 0.54
18 7 0.29
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (16 bp):
AAATAAAAATATTAAA
Found at i:32669111 original size:14 final size:15
Alignment explanation
Indices: 32669084--32669115 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
32669074 TTTTAGAATT
32669084 TTTTTAATATTTTTA
1 TTTTTAATATTTTTA
32669099 TTTTTAATA-TTTTA
1 TTTTTAATATTTTTA
32669113 TTT
1 TTT
32669116 GCCTTGAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTAATATTTTTA
Found at i:32688017 original size:33 final size:33
Alignment explanation
Indices: 32687920--32688020 Score: 193
Period size: 33 Copynumber: 3.1 Consensus size: 33
32687910 TTCGAGTCAA
*
32687920 AGAGTCAATTTTGATAAATCCACGGTGTTCTCT
1 AGAGTCAATTTTGATAAATCCACGGTGTTCTTT
32687953 AGAGTCAATTTTGATAAATCCACGGTGTTCTTT
1 AGAGTCAATTTTGATAAATCCACGGTGTTCTTT
32687986 AGAGTCAATTTTGATAAATCCACGGTGTTCTTT
1 AGAGTCAATTTTGATAAATCCACGGTGTTCTTT
32688019 AG
1 AG
32688021 CTCTAATACT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.38
Consensus pattern (33 bp):
AGAGTCAATTTTGATAAATCCACGGTGTTCTTT
Found at i:32692018 original size:13 final size:13
Alignment explanation
Indices: 32692002--32692029 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
32691992 TTTAAAGGCC
32692002 TAAATTAAAATTT
1 TAAATTAAAATTT
32692015 TAAATTAAAATTT
1 TAAATTAAAATTT
32692028 TA
1 TA
32692030 TTATATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TAAATTAAAATTT
Found at i:32692370 original size:21 final size:20
Alignment explanation
Indices: 32692341--32692380 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
32692331 TATTCATTTG
* *
32692341 AATTCTATTATGTCTTTTTTT
1 AATTATATTATAT-TTTTTTT
32692362 AATTATATTATATTTTTTT
1 AATTATATTATATTTTTTT
32692381 ATTTTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (20 bp):
AATTATATTATATTTTTTTT
Found at i:32694228 original size:35 final size:35
Alignment explanation
Indices: 32694176--32694243 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
32694166 AGCAGTTGAT
* *
32694176 TTTCCTTTTATGTTTTTGGAAAATTAAAAATACCG
1 TTTCCTTTTATGGTTTTGGAAAACTAAAAATACCG
*
32694211 TTTCTTTTTATGGTTTTGGAAAACTAAAAATAC
1 TTTCCTTTTATGGTTTTGGAAAACTAAAAATAC
32694244 TCCACTTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTCCTTTTATGGTTTTGGAAAACTAAAAATACCG
Found at i:32699147 original size:14 final size:14
Alignment explanation
Indices: 32699128--32699158 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
32699118 TATAGTCTTA
32699128 GGGTAGAGAGCACC
1 GGGTAGAGAGCACC
*
32699142 GGGTAGAGAGTACC
1 GGGTAGAGAGCACC
32699156 GGG
1 GGG
32699159 CAGATATGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.16, G:0.48, T:0.10
Consensus pattern (14 bp):
GGGTAGAGAGCACC
Found at i:32701177 original size:3 final size:3
Alignment explanation
Indices: 32701171--32701409 Score: 60
Period size: 3 Copynumber: 76.3 Consensus size: 3
32701161 ACGTATGTTG
* * *
32701171 TTA TTA TTAA TGTA TCA TTG TTA TTT TCTA TT- TTA TTA TTA CTT- TTA
1 TTA TTA TT-A T-TA TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA
* *
32701218 TTA CTA TTG TT- TCTA TTA TTA TTA TT- TTCA TTA CTTCCA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA TT-A TTA -TT--A TTA TTA
* * * * * *
32701263 TTA TCA TCA TTT TCTA TTA TCA TTA ATA TGTCA TTTG TTCA TTA TTA
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-T-A -TTA TT-A TTA TTA
** * * * *
32701310 TTA TTA TTA TTA TTA ACA CTA TTA TCA TCA TTA TATA TTTA CTT- TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA -TTA -TTA TTA
* * ** * * *
32701357 TTA ATA TCA TTA CCA TTA -TA TT- TTA TTA TTA TTA TTA CTA TAA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
32701403 TTA TTA T
1 TTA TTA T
32701410 CCGTCCTATT
Statistics
Matches: 171, Mismatches: 42, Indels: 46
0.66 0.16 0.18
Matches are distributed among these distances:
2 13 0.08
3 126 0.74
4 24 0.14
5 6 0.04
6 2 0.01
ACGTcount: A:0.29, C:0.10, G:0.02, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:32701853 original size:125 final size:125
Alignment explanation
Indices: 32701608--32701875 Score: 310
Period size: 125 Copynumber: 2.1 Consensus size: 125
32701598 TTCGAGAAAC
* * *
32701608 CGTGTCCTAACGTACTGGGTTTCGATTTTTCGTTTGATCTAAGTAACTGATTATCCTTTTAAATT
1 CGTGTCCTAACGTACTGGGTTTCGATTTTCCGTTTGATCTAAATAACTGAATATCCTTTTAAATT
* * * *
32701673 AAAATACATGAGTTTTAAATAAAACAAAAGCAATATTCCGTATTTAGAAATTCGA-GTAGT
66 AAAATACATGAGTTTTAAATAAAACAAAAGCAATACTCCATATCTAGAAAGTCGAGGT-GT
* * *
32701733 CGTGTCCTAACGTACTGGGTTTTGATTTTCCGTTTGATCTAAATATCTGAATGTCCTTTTTAAAA
1 CGTGTCCTAACGTACTGGGTTTCGATTTTCCGTTTGATCTAAATAACTGAATATCC-TTTT-AAA
* * * * * * *
32701798 TTTAAATACATGAGTTTTAAATGAAATAGAAGGCAA-GCT-CATA-CTCGAAGGTCGAGGTGT
64 TTAAAATACATGAGTTTTAAATAAAACA-AAAGCAATACTCCATATCTAGAAAGTCGAGGTGT
*
32701858 TGTGTCCTAACGTACTGG
1 CGTGTCCTAACGTACTGG
32701876 ATATAACATT
Statistics
Matches: 121, Mismatches: 18, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
125 77 0.64
126 9 0.07
127 29 0.24
128 6 0.05
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.37
Consensus pattern (125 bp):
CGTGTCCTAACGTACTGGGTTTCGATTTTCCGTTTGATCTAAATAACTGAATATCCTTTTAAATT
AAAATACATGAGTTTTAAATAAAACAAAAGCAATACTCCATATCTAGAAAGTCGAGGTGT
Found at i:32708035 original size:40 final size:40
Alignment explanation
Indices: 32707984--32708132 Score: 169
Period size: 40 Copynumber: 3.7 Consensus size: 40
32707974 CGGATGATAT
* * *
32707984 CCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACTATAT
1 CCGGACTAAG-TCCCGAAGGCATTCGTGCTAGTTATTATAA
32708024 CCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAA
1 CCGGACTAAG-TCCCGAAGGC-ATTCGTGCTAGTTATTATAA
** **
32708064 CCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAA
1 CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
**
32708104 CCGGGTTAAGTCCCGAAGGCATTCGTGCT
1 CCGGACTAAGTCCCGAAGGCATTCGTGCT
32708133 GGTTGTTACA
Statistics
Matches: 99, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
39 4 0.04
40 92 0.93
41 3 0.03
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.28
Consensus pattern (40 bp):
CCGGACTAAGTCCCGAAGGCATTCGTGCTAGTTATTATAA
Found at i:32716164 original size:40 final size:40
Alignment explanation
Indices: 32716109--32716295 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
32716099 TATTCAGATG
*
32716109 ATATCCGGACTAAGATCCAAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
32716149 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* *
32716189 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATT
1 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
* ** * ** *
32716229 ATAACCGGGTTAAG-TCCCGAAGGCATTCGTGCGGGTTATT
1 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGTTACT
* **
32716269 ATAACCGGTTTAA-ATCCCGAAGGCATT
1 ATATCCGGACTAAGAT-CCGAAGGCATT
32716296 CGTACGGGTT
Statistics
Matches: 134, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
39 1 0.01
40 133 0.99
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (40 bp):
ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
Found at i:32716249 original size:80 final size:80
Alignment explanation
Indices: 32716109--32716341 Score: 274
Period size: 80 Copynumber: 2.9 Consensus size: 80
32716099 TATTCAGATG
* * * * **
32716109 ATATCCGGACTAAGATCCAAAGGCATTTGTGCTAGTTACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATTATAACCGGGTTAAG-TCCCGAAGGC
*
32716173 ATTTGTGCTAGTTACT
65 ATTCGTGCTAGTTACT
32716189 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATTATAACCGGGTTAAGTCCCGAAGGCA
1 ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATTATAACCGGGTTAAGTCCCGAAGGCA
** *
32716254 TTCGTGCGGGTTATT
66 TTCGTGCTAGTTACT
* ** * **
32716269 ATAACCGGTTTAA-ATCCCGAAGGC-ATTCGTACGGGTTATTATAACCGGGTTAAGTCCCGAAGG
1 ATATCCGGACTAAGAT-CCGAAGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTCCCGAAGG
32716332 CATTCGTGCT
64 CATTCGTGCT
32716342 GGTTGTTACA
Statistics
Matches: 133, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
79 6 0.05
80 127 0.95
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (80 bp):
ATATCCGGACTAAGATCCGAAGGCAATTGTGCTAGTTATTATAACCGGGTTAAGTCCCGAAGGCA
TTCGTGCTAGTTACT
Found at i:32716296 original size:40 final size:40
Alignment explanation
Indices: 32716128--32716345 Score: 217
Period size: 40 Copynumber: 5.5 Consensus size: 40
32716118 CTAAGATCCA
* * * * **
32716128 AAGGCATTTGTGCTAGTTACTATATCCGGACTAAGAT-CCG
1 AAGGCATTCGTGCTGGTTATTATAACCGGGTTAA-ATCCCG
* * * * **
32716168 AAGGCATTTGTGCTAGTTACTATATCCGGACTAAGAT-CCG
1 AAGGCATTCGTGCTGGTTATTATAACCGGGTTAA-ATCCCG
* *
32716208 AAGGCAATT-GTGCTAGTTATTATAACCGGGTTAAGTCCCG
1 AAGGC-ATTCGTGCTGGTTATTATAACCGGGTTAAATCCCG
* *
32716248 AAGGCATTCGTGCGGGTTATTATAACCGGTTTAAATCCCG
1 AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAATCCCG
* * *
32716288 AAGGCATTCGTACGGGTTATTATAACCGGGTTAAGTCCCG
1 AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAATCCCG
32716328 AAGGCATTCGTGCTGGTT
1 AAGGCATTCGTGCTGGTT
32716346 GTTACATCCG
Statistics
Matches: 161, Mismatches: 14, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 4 0.02
40 154 0.96
41 3 0.02
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (40 bp):
AAGGCATTCGTGCTGGTTATTATAACCGGGTTAAATCCCG
Found at i:32720144 original size:26 final size:26
Alignment explanation
Indices: 32720115--32720222 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
32720105 TGATACAAAT
* *
32720115 TGATAATGGGTTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
32720141 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32720167 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32720193 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
32720219 TGAT
1 TGAT
32720223 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:32723869 original size:117 final size:118
Alignment explanation
Indices: 32723632--32723869 Score: 293
Period size: 117 Copynumber: 2.0 Consensus size: 118
32723622 TAAATCGAAT
* * * *
32723632 AAAAAACGAAGCCCAGTACGGTAGGGTACGTTTTTTAAAATGATTAAGTATAAAAAATTGTCCTT
1 AAAAAACGAAGCCCAATACGGTAGGGCACGTTTTTTAAAACGATTAAGTATAAAAAATTATCCTT
* * * * * * *
32723697 ATTAAAAACTATTTGGGAATAAAATGTTGAATAAAATACTTAAATCGAATATA
66 ATTAAAAACAAATTGAGAATAAAATGTGGAATAAAAGAATTAAAACGAATATA
* * *
32723750 AAAAAACGAA-CCCAATACGGTAGGGCACGTTTTTTAAAACGGTTAAGTATAGAAAATTATCTTT
1 AAAAAACGAAGCCCAATACGGTAGGGCACGTTTTTTAAAACGATTAAGTATAAAAAATTATCCTT
* *
32723814 ATGTTAAAAACAAATTGAGAATACATTGTGGAATAAAAGAATTAAAAC-AAT-TA
66 A--TTAAAAACAAATTGAGAATAAAATGTGGAATAAAAGAATTAAAACGAATATA
32723867 AAA
1 AAA
32723870 TTTGGGGAGG
Statistics
Matches: 102, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
117 53 0.52
118 13 0.13
119 36 0.35
ACGTcount: A:0.47, C:0.10, G:0.15, T:0.29
Consensus pattern (118 bp):
AAAAAACGAAGCCCAATACGGTAGGGCACGTTTTTTAAAACGATTAAGTATAAAAAATTATCCTT
ATTAAAAACAAATTGAGAATAAAATGTGGAATAAAAGAATTAAAACGAATATA
Found at i:32724032 original size:46 final size:45
Alignment explanation
Indices: 32723957--32724050 Score: 104
Period size: 46 Copynumber: 2.1 Consensus size: 45
32723947 AATATAGAGA
*
32723957 AAATTAGCAATAGCAATAATAATGATAAAAATATAAAA-AT-ATGAT
1 AAATTAGCAATAACAATAATAATGAT-AAAATA-AAAACATAATGAT
* *
32724002 AAATATAGCAATAATAATATTAAT-AGTAAAATAAAAACATAATGAT
1 AAAT-TAGCAATAACAATAATAATGA-TAAAATAAAAACATAATGAT
32724048 AAA
1 AAA
32724051 ATAATATATA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
44 4 0.10
45 13 0.31
46 25 0.60
ACGTcount: A:0.62, C:0.04, G:0.07, T:0.27
Consensus pattern (45 bp):
AAATTAGCAATAACAATAATAATGATAAAATAAAAACATAATGAT
Found at i:32724129 original size:22 final size:22
Alignment explanation
Indices: 32724094--32724135 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
32724084 GATAAAAGTG
32724094 AAAATTAAAATAATAACTATACT
1 AAAATTAAAATAATAA-TATACT
*
32724117 AAAA-TAACATAATAATATA
1 AAAATTAAAATAATAATATA
32724136 GTATGTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 10 0.56
23 4 0.22
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (22 bp):
AAAATTAAAATAATAATATACT
Found at i:32724277 original size:21 final size:22
Alignment explanation
Indices: 32724247--32724291 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
32724237 TAATAAAAAT
*
32724247 ATAATGAATAT-ATAATATTAA
1 ATAATGAATATAATAATATGAA
*
32724268 ATAATTAATATAATAATATGAA
1 ATAATGAATATAATAATATGAA
32724290 AT
1 AT
32724292 CAAAACTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
ATAATGAATATAATAATATGAA
Found at i:32725873 original size:89 final size:87
Alignment explanation
Indices: 32725780--32726076 Score: 249
Period size: 89 Copynumber: 3.4 Consensus size: 87
32725770 AAGCCATCAG
** *
32725780 TCTTATCTCTC-TGAAGTTGCAATGGAGCAGACTGAAAATTGCAGACCTTATCTCCCTAAGCAGT
1 TCTTATCTC-CATGAAGCGGCAATGGAGCAGACT-AAAATTACAGACCTTATCTCCCTAAGCAGT
32725844 AGTGGAGCAGATCGAAGATGACAAA
64 AGTGGAGCAGATC-AAGATGACAAA
* * * * *** * ** *
32725869 TCTTATCTCCATGTAGCGGTAATGGAGCAGATTTAAGCCACCAG-CCTTATCTCCTTGAAGTTGC
1 TCTTATCTCCATGAAGCGGCAATGGAGCAGACTAAAATTA-CAGACCTTATCTCCCT-AAGCAGT
* ** * *
32725933 AGCGGAATAGGTTCAAGAT-ACAAG
64 AGTGGAGCA-GATCAAGATGACAAA
* ** * *
32725957 TCTTATCTCCCTGAAGTTGCAATGAAGCAGACTACAAATTACAGATCTTATCTCCCTAAGCAGTA
1 TCTTATCTCCATGAAGCGGCAATGGAGCAGACTA-AAATTACAGACCTTATCTCCCTAAGCAGTA
* * *
32726022 GTGGAGCAGATCAAAGACGGCGAA
65 GTGGAGCAGATC-AAGATGACAAA
*
32726046 TCTTATCTCCATGTAGCGGCAATGGAGCAGA
1 TCTTATCTCCATGAAGCGGCAATGGAGCAGA
32726077 TTTAAGCCAC
Statistics
Matches: 152, Mismatches: 48, Indels: 16
0.70 0.22 0.07
Matches are distributed among these distances:
87 3 0.02
88 61 0.40
89 85 0.56
90 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (87 bp):
TCTTATCTCCATGAAGCGGCAATGGAGCAGACTAAAATTACAGACCTTATCTCCCTAAGCAGTAG
TGGAGCAGATCAAGATGACAAA
Found at i:32725920 original size:133 final size:133
Alignment explanation
Indices: 32725682--32725933 Score: 391
Period size: 133 Copynumber: 1.9 Consensus size: 133
32725672 AACACTGATG
* * *
32725682 AAATTGCAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATTGAAGACAGTAAATCTTATCTCCA
1 AAATTGCAGACCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACAGCAAATCTTATCTCCA
* *
32725747 TGTAGCGGCAATGGAGCAAATTTAAGCCATCAGTCTTATCT-CTCTGAAGTTGCAATGGAGCAGA
66 TGTAGCGGCAATGGAGCAAATTTAAGCCACCAGCCTTATCTCCT-TGAAGTTGCAATGGAGCAGA
32725811 CTGA
130 CTGA
* *
32725815 AAATTGCAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA-TGACAAATCTTATCTCC
1 AAATTGCAGACCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACAG-CAAATCTTATCTCC
* *
32725879 ATGTAGCGGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAAGTTGCA
65 ATGTAGCGGCAATGGAGCAAATTTAAGCCACCAGCCTTATCTCCTTGAAGTTGCA
32725934 GCGGAATAGG
Statistics
Matches: 108, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
132 1 0.01
133 105 0.97
134 2 0.02
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (133 bp):
AAATTGCAGACCTTATCTCCCTAAGCAGTAATGGAGCAGATCGAAGACAGCAAATCTTATCTCCA
TGTAGCGGCAATGGAGCAAATTTAAGCCACCAGCCTTATCTCCTTGAAGTTGCAATGGAGCAGAC
TGA
Found at i:32725986 original size:133 final size:133
Alignment explanation
Indices: 32725682--32725987 Score: 314
Period size: 133 Copynumber: 2.3 Consensus size: 133
32725672 AACACTGATG
* * * * * * *
32725682 AAATTGCAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATTGAAGA-CAGTAAATCTTATCTCC
1 AAATTACAGACCTTATCTCCCTAAGCAGCAATGAAGCAGATCGAAGATGA-CAAATCTTATCTCC
* * * *
32725746 ATGTAGCGGCAATGGAGCAAATTTAAGCCATCAGTCTTATCTCTCTGAAGTTGCAATGGAGCAGA
65 ATGTAGCGGCAATGGAGCAAATTTAAGCCACCAGCCTTATCTCTCTGAAGTTGCAACGGAACAGA
*
32725811 CTGA
130 CTCA
* * * *
32725815 AAATTGCAGACCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAAATCTTATCTCCA
1 AAATTACAGACCTTATCTCCCTAAGCAGCAATGAAGCAGATCGAAGATGACAAATCTTATCTCCA
* * * * *
32725880 TGTAGCGGTAATGGAGCAGATTTAAGCCACCAGCCTTATCTC-CTTGAAGTTGCAGCGGAATAGG
66 TGTAGCGGCAATGGAGCAAATTTAAGCCACCAGCCTTATCTCTC-TGAAGTTGCAACGGAACAGA
*
32725944 TTCA
130 CTCA
* * **
32725948 AGA-TACA-AGTCTTATCTCCCTGAAGTTGCAATGAAGCAGA
1 AAATTACAGA-CCTTATCTCCCT-AAGCAGCAATGAAGCAGA
32725988 CTACAAATTA
Statistics
Matches: 145, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
131 1 0.01
132 15 0.10
133 128 0.88
134 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (133 bp):
AAATTACAGACCTTATCTCCCTAAGCAGCAATGAAGCAGATCGAAGATGACAAATCTTATCTCCA
TGTAGCGGCAATGGAGCAAATTTAAGCCACCAGCCTTATCTCTCTGAAGTTGCAACGGAACAGAC
TCA
Found at i:32725988 original size:177 final size:177
Alignment explanation
Indices: 32725778--32726142 Score: 572
Period size: 177 Copynumber: 2.1 Consensus size: 177
32725768 TTAAGCCATC
* * *
32725778 AGTCTTATCTCTCTGAAGTTGCAATGGAGCAGACTGA-AAATTGCAGACCTTATCTCCCTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAATGAAGCAGACT-ACAAATTACAGACCTTATCTCCCTAAGCA
* * *
32725842 GTAGTGGAGCAGATCGAAGATGACAAATCTTATCTCCATGTAGCGGTAATGGAGCAGATTTAAGC
65 GTAGTGGAGCAGATCAAAGACGACAAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGC
*
32725907 CACCAGCCTTATC-TCCTTGAAGTTGCAGCGGAATAGGTTCAAGATACA
130 CACCAGCCTTATCTTCC-TGAAGTTGCAGCGGAACAGGTTCAAGATACA
*
32725955 AGTCTTATCTCCCTGAAGTTGCAATGAAGCAGACTACAAATTACAGATCTTATCTCCCTAAGCAG
1 AGTCTTATCTCCCTGAAGTTGCAATGAAGCAGACTACAAATTACAGACCTTATCTCCCTAAGCAG
* *
32726020 TAGTGGAGCAGATCAAAGACGGCGAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCC
66 TAGTGGAGCAGATCAAAGACGACAAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCC
* * * *
32726085 ACCTGCCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTCAAGATACA
131 ACCAGCCTTATCTTCCTGAAGTTGCAGCGGAACAGGTTCAAGATACA
32726132 AGTCTTATCTC
1 AGTCTTATCTC
32726143 TCTAAGCAGT
Statistics
Matches: 172, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
176 1 0.01
177 168 0.98
178 3 0.02
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (177 bp):
AGTCTTATCTCCCTGAAGTTGCAATGAAGCAGACTACAAATTACAGACCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCAAAGACGACAAATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCC
ACCAGCCTTATCTTCCTGAAGTTGCAGCGGAACAGGTTCAAGATACA
Found at i:32726323 original size:43 final size:45
Alignment explanation
Indices: 32726270--32726653 Score: 155
Period size: 45 Copynumber: 8.6 Consensus size: 45
32726260 AGCAAACCTT
* ** * *
32726270 ATCTCTCTGAAGTTTTAG-AGAGCAGGTTGAAGTTA-CATG-TCTC
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCA-GATCTC
* *
32726313 ATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATAGCAGATCTT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAGATCTC
* ** ** * * * * *
32726358 ATCTCCCTGAAGTTGTAGCGGAGCAGATCAAATATAGTAAACCTT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAGATCTC
** * *
32726403 ATCTCTTTGAAGTTGCAGTAGAGCA-ACTTGAAG-TAACA-AGTCTT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGA-TTGAAGATAGCAGA-TCTC
* * * * *
32726447 ATCTCCCTGAAGTTGCAGTGGAACAGGTTGAA-ATTACCA-ACTCTT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGA-TAGCAGA-TCTC
* * * * * * * *
32726492 ACCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTAG-AAATCTC
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAGATCTC
* * * * * * * * *
32726536 TTCTCCTTGAAATTACATTGGAGCAGATT-AA-A-ACCACAAGTCTT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCA-GA-TCTC
* * * * *
32726580 ATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGACAGCTA-ATCTT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGC-AGATCTC
* *
32726625 ATCTCCCTGAAGTTGCAGTGGAGCGGATT
1 ATCTCCCTGAAGTTGCAGTAGAGCAGATT
32726654 AAGGCGACAA
Statistics
Matches: 258, Mismatches: 66, Indels: 32
0.72 0.19 0.09
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
43 20 0.08
44 99 0.38
45 132 0.51
46 2 0.01
47 2 0.01
48 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (45 bp):
ATCTCCCTGAAGTTGCAGTAGAGCAGATTGAAGATAGCAGATCTC
Found at i:32726365 original size:45 final size:45
Alignment explanation
Indices: 32725691--32726653 Score: 349
Period size: 44 Copynumber: 21.8 Consensus size: 45
32725681 GAAATTGCAG
** * * * *
32725691 ATCTTATCTCCCT-AAGCAGTAATGGAGCAGATTGAAGACAGTAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* * ** * * * ** *
32725735 ATCTTATCTCCATGTAGCGGCAATGGAGCAAATTTAAGCCATC-A
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* * * * * * *
32725779 GTCTTATCTCTCTGAAGTTGCAATGGAGCAGACTGAAAATTGCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* ** * *
32725824 ACCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCGAAGAT-GACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAG-CAA
* * ** * * * ** *
32725868 ATCTTATCTCCATGTAGCGGTAATGGAGCAGATTTAAGCCA-CCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
** * * ** * *
32725912 GCCTTATCTCCTTGAAGTTGCAGCGGAATAGGTTCAAGATA-CAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* * * * * *
32725956 GTCTTATCTCCCTGAAGTTGCAATGAAGCAGACT-ACAAATTA-CAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGA-AGA-TAGCAA
** * ** ** *
32726001 ATCTTATCTCCCT-AAGCAGTAGTGGAGCAGATCAAAGACGGCGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* * ** * * ** **
32726045 ATCTTATCTCCATGTAGCGGCAATGGAGCAGATTTAAGCCA-CCT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
** * * * *
32726089 GCCTTATCTTCCTGAAGTTGTAGTGGAGCAGGTTCAAGATA-CAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* * ** * * * *
32726133 GTCTTATCTCTCT-AAGCAGTAGTGGAGCAGACTGAAGATGGCGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
** * * ** * *
32726177 ATCTTATCTCTATGTAACG--GCAATGGAGCAGATTTAAGCCACCAG
1 ATCTTATCTCCCTG-AA-GTTGCAGTGGAGCAGATTGAAGATAGCAA
* * * * ** * *
32726222 A--TTATTTCCCTGAAGTTACAGCGAAATAGATCGAGGATAGCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* * ** * * * *
32726265 ACCTTATCTCTCTGAAGTTTTAG-AGAGCAGGTTGAAGTTA-CAT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* * * * *
32726308 GTCTCATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATAGCAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* * ** * *
32726353 ATCTTATCTCCCTGAAGTTGTAGCGGAGCAGATCAAATATAGTAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* ** * *
32726398 ACCTTATCTCTTTGAAGTTGCAGTAGAGCA-ACTTGAAG-TAACAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGATAGCAA
* * * *
32726442 GTCTTATCTCCCTGAAGTTGCAGTGGAACAGGTTGAA-ATTACCAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TAGCAA
* * * * * * *
32726487 CTCTTACCTCCTTGAAGTTCCAGTGGAGTAGATCGAAGCTAG-AA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
* * * * *
32726531 ATCTCT-TCTCCTTGAAATTACATTGGAGCAGATT-AA-A-ACCACA
1 ATCT-TATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCA-A
* * * *
32726574 AGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTGAAGACAGCTA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
*
32726620 ATCTTATCTCCCTGAAGTTGCAGTGGAGCGGATT
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT
32726654 AAGGCGACAA
Statistics
Matches: 654, Mismatches: 232, Indels: 65
0.69 0.24 0.07
Matches are distributed among these distances:
41 2 0.00
42 3 0.00
43 69 0.11
44 321 0.49
45 251 0.38
46 5 0.01
47 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (45 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAA
Found at i:32726502 original size:89 final size:90
Alignment explanation
Indices: 32726315--32726524 Score: 205
Period size: 89 Copynumber: 2.3 Consensus size: 90
32726305 CATGTCTCAT
* * * *
32726315 CTCCCTGAAGTTGCAGTAGAGTAGATTGAAGATAGCAGATCTTATCTCCCTGAAGTTGTAGCGGA
1 CTCCTTGAAGTTGCAGTAGAGCAGATTGAAGATAACAGATCTTATCTCCCTGAAGTTGCAGCGGA
* * *
32726380 GCAGATCAAATATAGTAAACCTTAT
66 ACAGATCAAATATAGCAAACCTTAC
* *
32726405 CTCTTTGAAGTTGCAGTAGAGCA-ACTTGAAG-TAACA-AGTCTTATCTCCCTGAAGTTGCAGTG
1 CTCCTTGAAGTTGCAGTAGAGCAGA-TTGAAGATAACAGA-TCTTATCTCCCTGAAGTTGCAGCG
* * *
32726467 GAACAGGTTGAAAT-TA-CCAACTCTTAC
64 GAACA-GATCAAATATAGCAAAC-CTTAC
* * * *
32726494 CTCCTTGAAGTTCCAGTGGAGTAGATCGAAG
1 CTCCTTGAAGTTGCAGTAGAGCAGATTGAAG
32726525 CTAGAAATCT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
88 4 0.04
89 61 0.62
90 33 0.34
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (90 bp):
CTCCTTGAAGTTGCAGTAGAGCAGATTGAAGATAACAGATCTTATCTCCCTGAAGTTGCAGCGGA
ACAGATCAAATATAGCAAACCTTAC
Found at i:32726697 original size:20 final size:20
Alignment explanation
Indices: 32726672--32726711 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32726662 AACAAAGTAG
32726672 ATCAAAACTACAAGTTTTAT
1 ATCAAAACTACAAGTTTTAT
32726692 ATCAAAACTACAAGTTTTAT
1 ATCAAAACTACAAGTTTTAT
32726712 CTTTCTGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (20 bp):
ATCAAAACTACAAGTTTTAT
Found at i:32727261 original size:3 final size:3
Alignment explanation
Indices: 32727247--32727602 Score: 90
Period size: 3 Copynumber: 115.7 Consensus size: 3
32727237 AATAGTGTTT
* * *
32727247 TTA TTA TT- TTA TTA TTA TTT TTA CCTTT TTA TTA CTA TTA TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA --TTA TTA TTA TTA TTA TTA TT-A
* * * * * ** *
32727294 CCTA CTA TTA TTA TTT TTA TTA ATA -TA ATA TTA TT- TCC TT- TTT
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** *
32727337 TTA -TA TTA TTA TTA TTA TTA GCA CGTA -TA TTA TTA TTA TTAA TGTA
1 TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TT-A T-TA
* * * * *
32727383 TCA TTG TTA TTT TCTA TT- TTA TTA TTA CTT- TTA TTA CTA TTG TT-
1 TTA TTA TTA TTA T-TA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
* * *
32727427 TCTA TTA TTA TTA TT- TTCA TTA CTTCCA TTA TTA TTA TCA TCA TTT
1 T-TA TTA TTA TTA TTA TT-A TTA -TT--A TTA TTA TTA TTA TTA TTA
* * * **
32727473 TCTA TTA TGA TTA ATA TGTCA TTTG TTCA TTA TTA TTA TTA TTA ACA
1 T-TA TTA TTA TTA TTA T-T-A -TTA TT-A TTA TTA TTA TTA TTA TTA
* * * * * * **
32727520 CTA TTA TCA TCA TTA TATA TTTA CTT- TTT TTA ATA TCA TTA CCA TTA
1 TTA TTA TTA TTA TTA T-TA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* *
32727567 -TA TT- TTA TTA TTA TTA TTA CTA TTA TTT TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
32727603 CGTCCTATTT
Statistics
Matches: 261, Mismatches: 58, Indels: 68
0.67 0.15 0.18
Matches are distributed among these distances:
2 24 0.09
3 198 0.76
4 28 0.11
5 9 0.03
6 2 0.01
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:32727269 original size:20 final size:20
Alignment explanation
Indices: 32727244--32727355 Score: 61
Period size: 20 Copynumber: 5.5 Consensus size: 20
32727234 CGTAATAGTG
32727244 TTTTTATTATTTTATTATTA
1 TTTTTATTATTTTATTATTA
* *
32727264 TTTTTACCT-TTTTATTACTA
1 TTTTTA-TTATTTTATTATTA
* **
32727284 TTATTATTAACCTACTATTATTA
1 TTTTTATT-A--TTTTATTATTA
* * *
32727307 TTTTTATTAATATAATATTA
1 TTTTTATTATTTTATTATTA
*
32727327 TTTCCT-TT-TTTTA-TATTA
1 TTT-TTATTATTTTATTATTA
*
32727345 TTATTATTATT
1 TTTTTATTATT
32727356 AGCACGTATA
Statistics
Matches: 67, Mismatches: 17, Indels: 17
0.66 0.17 0.17
Matches are distributed among these distances:
17 1 0.01
18 9 0.13
19 6 0.09
20 33 0.49
21 2 0.03
22 1 0.01
23 15 0.22
ACGTcount: A:0.28, C:0.07, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTTATTATTTTATTATTA
Found at i:32727325 original size:23 final size:23
Alignment explanation
Indices: 32727276--32727328 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
32727266 TTTACCTTTT
* * *
32727276 TATTACTATTATTATTAACCTAC
1 TATTATTATTATTATTAACATAA
* *
32727299 TATTATTATTTTTATTAATATAA
1 TATTATTATTATTATTAACATAA
32727322 TATTATT
1 TATTATT
32727329 TCCTTTTTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.57
Consensus pattern (23 bp):
TATTATTATTATTATTAACATAA
Found at i:32728044 original size:125 final size:125
Alignment explanation
Indices: 32727798--32728066 Score: 285
Period size: 125 Copynumber: 2.2 Consensus size: 125
32727788 ATTCAAGAAA
** * * *
32727798 TCGTGTCCTAACGTACTGGGTTTCGGTTTTTCGTTTGATCTAAGTAACCGATTATCCTTTAAAAT
1 TCGTGTCCTAACGTACTGGGTTTCAATTTTCCGTTTGATCTAAATAACCGAATATCCTTTAAAAT
* * * * *
32727863 TAAAATACATGAGGTTTAAATAAAACAAAAGTAATATTCTGTATTTAGAAATTCGA-GTAG
66 TAAAATACATGAGGTTTAAATAAAACAAAAGTAATACTCTATACTCAGAAAGTCGAGGT-G
* * *
32727923 TCGTGCCCTAACGTACTGGGTTTCAATTTTCCGTTTGATCTAAATATCCGAATGTCCTTTTTAAA
1 TCGTGTCCTAACGTACTGGGTTTCAATTTTCCGTTTGATCTAAATAACCGAATATCC--TTTAAA
* * * * * *
32727988 ATTTAAATACATGAGTTTTAAATGAAATAAAAGGTAA-GCT-TATACTCA-AAGGTCGAGGTG
64 ATTAAAATACATGAGGTTTAAATAAAACAAAA-GTAATACTCTATACTCAGAAAGTCGAGGTG
* *
32728048 TTGTGTCGTAACGTACTGG
1 TCGTGTCCTAACGTACTGG
32728067 ATATAACATT
Statistics
Matches: 118, Mismatches: 22, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
125 72 0.61
126 7 0.06
127 35 0.30
128 4 0.03
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (125 bp):
TCGTGTCCTAACGTACTGGGTTTCAATTTTCCGTTTGATCTAAATAACCGAATATCCTTTAAAAT
TAAAATACATGAGGTTTAAATAAAACAAAAGTAATACTCTATACTCAGAAAGTCGAGGTG
Found at i:32734390 original size:13 final size:13
Alignment explanation
Indices: 32734362--32734400 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
32734352 AATCTATTTA
32734362 TTTAGTGTTTAAGG
1 TTTAG-GTTTAAGG
*
32734376 TTTAGGTTTAGGG
1 TTTAGGTTTAAGG
*
32734389 TTTAGGGTTAAG
1 TTTAGGTTTAAG
32734401 AAATGAATCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (13 bp):
TTTAGGTTTAAGG
Found at i:32735334 original size:37 final size:37
Alignment explanation
Indices: 32735293--32735366 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
32735283 ACCAAAATAA
32735293 GCTTTTGATAAAACAATTTTAATAAAGAAACAATTTT
1 GCTTTTGATAAAACAATTTTAATAAAGAAACAATTTT
*
32735330 GCTTTTGATAAAACAATTTTAATAAAGAAACTATTTT
1 GCTTTTGATAAAACAATTTTAATAAAGAAACAATTTT
32735367 ACTCATTCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (37 bp):
GCTTTTGATAAAACAATTTTAATAAAGAAACAATTTT
Found at i:32750723 original size:24 final size:24
Alignment explanation
Indices: 32750691--32750738 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
32750681 GGGTTGTTGC
32750691 CCATCTCATGTAATATGTAGGGAT
1 CCATCTCATGTAATATGTAGGGAT
32750715 CCATCTCATGTAATATGTAGGGAT
1 CCATCTCATGTAATATGTAGGGAT
32750739 TTGGACTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (24 bp):
CCATCTCATGTAATATGTAGGGAT
Found at i:32757051 original size:3 final size:3
Alignment explanation
Indices: 32757043--32757322 Score: 184
Period size: 3 Copynumber: 94.3 Consensus size: 3
32757033 ATAAACAAGA
* * * *
32757043 AAT AAT AAT AGT AA- AAA AAT AAT AAT AGT AAT AAT GAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
32757090 AAT AAT AAT AAT AAT AAT AGT AA- AGAC AAC AAC AAT AGT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT
* * * *
32757135 AAT -AG AAT -AT AAT AAT AA- AAT AAGG AAT AAT AAT AAT AAC AAC
1 AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT
* *
32757178 AAT AAT -AT AAAT AAT AAT AA- AA- AAC AAT AAT AGT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
32757221 AAT AAT AAT GAT AGT AAT AAT AAT AGT AAA AAT AGAA AAT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
** * * **
32757267 -AT CGT AAA AAT AAT AAT AAT AGT AAT AATT AATT AATT AAT TTT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AA-T AA-T AAT AAT AAT
32757314 AAT AA- AAT A
1 AAT AAT AAT A
32757323 GCAAAATAAC
Statistics
Matches: 219, Mismatches: 44, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
2 17 0.08
3 184 0.84
4 18 0.08
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:32761937 original size:174 final size:175
Alignment explanation
Indices: 32761647--32761987 Score: 666
Period size: 174 Copynumber: 2.0 Consensus size: 175
32761637 ATAGATCAAG
32761647 ATTTGAACCAATCAGTAGATAAACGTAAAAAAGAAAAAATTGTGGAATAGTCCTCAGAGTCGTGT
1 ATTTGAACCAATCAGTAGATAAACGTAAAAAAGAAAAAATTGTGGAATAGTCCTCAGAGTCGTGT
32761712 TTGTAGCTTTTTTGGTTAGGTAAGTTCGTATGGACTCACTTTATTAATTTTTTATATGATTGTGT
66 TTGTAGCTTTTTTGGTTAGGTAAGTTCGTATGGACTCACTTTATTAATTTTTTATATGATTGTGT
32761777 TA-TTTTTTATTGCTGGTTAGAAATTATATATATATATGTATATA
131 TATTTTTTTATTGCTGGTTAGAAATTATATATATATATGTATATA
*
32761821 ATTTGAACCAATCAGTAGATAAACGTAAAAAAGGAAAAATTGTGGAATAGTCCTCAGAGTCGTGT
1 ATTTGAACCAATCAGTAGATAAACGTAAAAAAGAAAAAATTGTGGAATAGTCCTCAGAGTCGTGT
32761886 TTGTAGCTTTTTTGGTTAGGTAAGTTCGTATGGACTCACTTTATTAATTTTTTATATGATTGTGT
66 TTGTAGCTTTTTTGGTTAGGTAAGTTCGTATGGACTCACTTTATTAATTTTTTATATGATTGTGT
32761951 TATTTTTTTATTGCTGGTTAGAAATTATATATATATA
131 TATTTTTTTATTGCTGGTTAGAAATTATATATATATA
32761988 AAGTTTTGGC
Statistics
Matches: 165, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
174 131 0.79
175 34 0.21
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (175 bp):
ATTTGAACCAATCAGTAGATAAACGTAAAAAAGAAAAAATTGTGGAATAGTCCTCAGAGTCGTGT
TTGTAGCTTTTTTGGTTAGGTAAGTTCGTATGGACTCACTTTATTAATTTTTTATATGATTGTGT
TATTTTTTTATTGCTGGTTAGAAATTATATATATATATGTATATA
Found at i:32763982 original size:15 final size:16
Alignment explanation
Indices: 32763962--32764000 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
32763952 AATTGGAAAG
*
32763962 ATGAAAAGTT-ATTAA
1 ATGAAAAATTAATTAA
32763977 ATGAAAAATTAATTAA
1 ATGAAAAATTAATTAA
*
32763993 ACGAAAAA
1 ATGAAAAA
32764001 GAAAACAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.26
Consensus pattern (16 bp):
ATGAAAAATTAATTAA
Found at i:32779765 original size:31 final size:31
Alignment explanation
Indices: 32779727--32779788 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
32779717 TCCTGTAAAA
*
32779727 AATTCCAACAAGGTTGAAGCTCATGTATAGT
1 AATTCCAACAAGGTTGAAACTCATGTATAGT
*
32779758 AATTCCAACAAGGTTGAAATTCATGTATAGT
1 AATTCCAACAAGGTTGAAACTCATGTATAGT
32779789 TTTGATCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (31 bp):
AATTCCAACAAGGTTGAAACTCATGTATAGT
Found at i:32779819 original size:18 final size:20
Alignment explanation
Indices: 32779796--32779836 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
32779786 AGTTTTGATC
32779796 TTTATCC-AT-TTTCTTAAA
1 TTTATCCTATATTTCTTAAA
*
32779814 TTTATCCTTTATTTCTTAAA
1 TTTATCCTATATTTCTTAAA
32779834 TTT
1 TTT
32779837 TGTTTCTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 7 0.35
19 1 0.05
20 12 0.60
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (20 bp):
TTTATCCTATATTTCTTAAA
Found at i:32790287 original size:6 final size:6
Alignment explanation
Indices: 32790276--32790308 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
32790266 TTTTTGATGT
32790276 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTT
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTT
32790309 CAAAACTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTTAA
Found at i:32792434 original size:21 final size:21
Alignment explanation
Indices: 32792408--32792461 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
32792398 CAGCGGTGGT
*
32792408 GGTGAGATTAGTTACTGTAGC
1 GGTGAGATTAGATACTGTAGC
32792429 GGTGAGATTAGATACTGTAGC
1 GGTGAGATTAGATACTGTAGC
*
32792450 AGTGAGATTAGA
1 GGTGAGATTAGA
32792462 AACAATGGTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.30, C:0.07, G:0.33, T:0.30
Consensus pattern (21 bp):
GGTGAGATTAGATACTGTAGC
Found at i:32795955 original size:20 final size:20
Alignment explanation
Indices: 32795927--32795967 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
32795917 AGGGGCACAC
*
32795927 GCCCGTGTGGCCTGGGACAT
1 GCCCATGTGGCCTGGGACAT
*
32795947 GCCCATGTGGCTTGGGACAT
1 GCCCATGTGGCCTGGGACAT
32795967 G
1 G
32795968 GCCGTGGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.27, G:0.39, T:0.22
Consensus pattern (20 bp):
GCCCATGTGGCCTGGGACAT
Found at i:32810110 original size:37 final size:38
Alignment explanation
Indices: 32810048--32810153 Score: 162
Period size: 37 Copynumber: 2.8 Consensus size: 38
32810038 TAGCTTGAAT
* * *
32810048 AGTCCCCACACGTAGTTATCAGGTCTTACCCGGACA-A
1 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
32810085 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
1 AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
*
32810123 A-TCTCCACACGTAATCATCGGGTCTTACCCG
1 AGTCTCCACACGTAGTCATCGGGTCTTACCCG
32810154 AAATATATTT
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
37 62 0.97
38 2 0.03
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.24
Consensus pattern (38 bp):
AGTCTCCACACGTAGTCATCGGGTCTTACCCGGACATA
Found at i:32810357 original size:48 final size:48
Alignment explanation
Indices: 32810296--32810585 Score: 490
Period size: 48 Copynumber: 6.0 Consensus size: 48
32810286 ATATACACAC
* *
32810296 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
32810344 ATCTCATATATATTTCACATTAGTCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
32810392 ATCTCATACATATTTCACATTATCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
32810440 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
32810488 ATCTTATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
32810536 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
32810584 AT
1 AT
32810586 ATTTATCTTG
Statistics
Matches: 226, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 226 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:32814020 original size:22 final size:23
Alignment explanation
Indices: 32813993--32814041 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 23
32813983 AGCCCGTGTG
*
32813993 GCCCACACACCCA-ATTAGTCTT
1 GCCCACACACCCAGATTAGCCTT
*
32814015 GCCCACACACCCAGATTGGCCTT
1 GCCCACACACCCAGATTAGCCTT
32814038 GCCC
1 GCCC
32814042 GTGTGGCCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 13 0.54
23 11 0.46
ACGTcount: A:0.22, C:0.45, G:0.14, T:0.18
Consensus pattern (23 bp):
GCCCACACACCCAGATTAGCCTT
Found at i:32822253 original size:39 final size:39
Alignment explanation
Indices: 32822167--32822352 Score: 148
Period size: 39 Copynumber: 4.8 Consensus size: 39
32822157 ACTTGAAACC
** * *
32822167 AATTACCAGCAC-AAGCCTGCGGGAATTTAAACCCGG-TAT
1 AATT-CCAGCACGAAGCCTGC-GGACCTTAAGCCCGGACAT
* * *
32822206 AATACCAGCTCGAAGCCTGCGAGA-CTTTAGCCCGGACAT
1 AATTCCAGCACGAAGCCTGCG-GACCTTAAGCCCGGACAT
* * * *
32822245 ATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATAT
1 AATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGACAT
* * * *
32822284 AATTCCAGCAC-ATAGCCTGCGGACCCTAAGTCCAGATAT
1 AATTCCAGCACGA-AGCCTGCGGACCTTAAGCCCGGACAT
*
32822323 AATTCCAGCAC-ATAGCCTGCGGACCCTAAG
1 AATTCCAGCACGA-AGCCTGCGGACCTTAAG
32822353 TCTGAATATA
Statistics
Matches: 125, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 17 0.14
39 108 0.86
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (39 bp):
AATTCCAGCACGAAGCCTGCGGACCTTAAGCCCGGACAT
Found at i:32822285 original size:78 final size:77
Alignment explanation
Indices: 32822199--32822354 Score: 181
Period size: 78 Copynumber: 2.0 Consensus size: 77
32822189 GAATTTAAAC
* * * * * *
32822199 CCGGTATAATACCAGCTCGA-AGCCTGCGAGA-CTTTAGCCCGGACATATTTCCAGCACGTAGCC
1 CCGGTATAATACCAGCAC-ATAGCCTGCG-GACCCTAAGCCCAGACATAATTCCAGCACATAGCC
*
32822262 TGCGGACCTTAAGT
64 TGCGGACCCTAAGT
* * *
32822276 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCAGATATAATTCCAGCACATAGCCT
1 CCGG-TATAATACCAGCACATAGCCTGCGGACCCTAAGCCCAGACATAATTCCAGCACATAGCCT
32822341 GCGGACCCTAAGT
65 GCGGACCCTAAGT
32822354 C
1 C
32822355 TGAATATACA
Statistics
Matches: 66, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
77 7 0.11
78 59 0.89
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (77 bp):
CCGGTATAATACCAGCACATAGCCTGCGGACCCTAAGCCCAGACATAATTCCAGCACATAGCCTG
CGGACCCTAAGT
Found at i:32822353 original size:39 final size:39
Alignment explanation
Indices: 32822247--32822354 Score: 189
Period size: 39 Copynumber: 2.8 Consensus size: 39
32822237 CCGGACATAT
* * *
32822247 TTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCAGATATAA
32822286 TTCCAGCACATAGCCTGCGGACCCTAAGTCCAGATATAA
1 TTCCAGCACATAGCCTGCGGACCCTAAGTCCAGATATAA
32822325 TTCCAGCACATAGCCTGCGGACCCTAAGTC
1 TTCCAGCACATAGCCTGCGGACCCTAAGTC
32822355 TGAATATACA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.27, C:0.31, G:0.20, T:0.21
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCCTAAGTCCAGATATAA
Found at i:32828824 original size:38 final size:40
Alignment explanation
Indices: 32828780--32828972 Score: 159
Period size: 39 Copynumber: 5.0 Consensus size: 40
32828770 TGAAACCAAT
* *
32828780 TACCAGCAC-AAGCCTGCGGGAATTTAAACCCGG-TATAA
1 TACCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATATAA
* * *
32828818 TACCAGCTCGAAGCCTGCGGGACTTT-AGCCCGGACATAT
1 TACCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATATAA
* * * *
32828857 TTCCAGCACGTAGCCTGC-GGACCTTAAGTCCGGATATAA
1 TACCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATATAA
* ** *
32828896 TTCCAGCAC-ATAGCCTGC-GGACCCTAAGTCCGGATATAA
1 TACCAGCACGA-AGCCTGCGGGACTTTAAGCCCGGATATAA
* ** *
32828935 TTCCAGCAC-ATAGCCTGC-GGACCCTAAGTCCGGATATA
1 TACCAGCACGA-AGCCTGCGGGACTTTAAGCCCGGATATA
32828973 CATCACTGAA
Statistics
Matches: 137, Mismatches: 14, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
38 20 0.15
39 117 0.85
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
TACCAGCACGAAGCCTGCGGGACTTTAAGCCCGGATATAA
Found at i:32828895 original size:78 final size:78
Alignment explanation
Indices: 32828809--32828972 Score: 208
Period size: 78 Copynumber: 2.1 Consensus size: 78
32828799 GAATTTAAAC
* * * * *
32828809 CCGG-TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCCAGCACGTAGC
1 CCGGATATAATACCAGCAC-ATAGCCTGC-GGACCCTAAGCCCGGACATAATTCCAGCACATAGC
*
32828871 CTGCGGACCTTAAGT
64 CTGCGGACCCTAAGT
* * *
32828886 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGTCCGGATATAATTCCAGCACATAGCCT
1 CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
32828951 GCGGACCCTAAGT
66 GCGGACCCTAAGT
32828964 CCGGATATA
1 CCGGATATA
32828973 CATCACTGAA
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
77 8 0.11
78 67 0.89
ACGTcount: A:0.26, C:0.30, G:0.23, T:0.21
Consensus pattern (78 bp):
CCGGATATAATACCAGCACATAGCCTGCGGACCCTAAGCCCGGACATAATTCCAGCACATAGCCT
GCGGACCCTAAGT
Found at i:32828955 original size:39 final size:39
Alignment explanation
Indices: 32828847--32828972 Score: 216
Period size: 39 Copynumber: 3.2 Consensus size: 39
32828837 GGACTTTAGC
* * * *
32828847 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
32828886 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
32828925 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
32828964 CCGGATATA
1 CCGGATATA
32828973 CATCACTGAA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 83 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
Found at i:32839071 original size:84 final size:83
Alignment explanation
Indices: 32838931--32839103 Score: 310
Period size: 84 Copynumber: 2.1 Consensus size: 83
32838921 ATTATCATGC
32838931 TCAGAACATAATATCAAACTAACAGATCCACAATTTTAGGGTTTGGTTAGCTTTTACCTACTATA
1 TCAGAACATAATATCAAACTAACAGATCCACAATTTTAGGGTTTGGTTAGCTTTTACCTACTATA
32838996 CGGTAGGTCCACAGTTAA
66 CGGTAGGTCCACAGTTAA
* * *
32839014 TCAGAACATAATATATAAATTAACAGATCCATAATTTTAGGGTTTGGTTAGCTTTTACCTACTAT
1 TCAGAACATAATAT-CAAACTAACAGATCCACAATTTTAGGGTTTGGTTAGCTTTTACCTACTAT
32839079 ACGGTAGGTCCACAGTTAA
65 ACGGTAGGTCCACAGTTAA
32839098 TCAGAA
1 TCAGAA
32839104 TGACCCGTGC
Statistics
Matches: 86, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
83 14 0.16
84 72 0.84
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (83 bp):
TCAGAACATAATATCAAACTAACAGATCCACAATTTTAGGGTTTGGTTAGCTTTTACCTACTATA
CGGTAGGTCCACAGTTAA
Found at i:32843646 original size:43 final size:43
Alignment explanation
Indices: 32843493--32843646 Score: 132
Period size: 43 Copynumber: 3.6 Consensus size: 43
32843483 CAATGCGATA
* * * * *
32843493 TCCCAGATATGGTCTTACATGTTATCAC-ATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCTCAATA-CGATGCCAATG
* * * * *
32843536 TCCCGGATAGGGTCTTACACGAAAT-TATAATACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCT-CAATACGATGCCAATG
* * * * *
32843579 TCCTAGACATGGTTTTACCCGTAATCTCAATACAATGCAAATG
1 TCCCAGACATGGTCTTACACGTAATCTCAATACGATGCCAATG
*
32843622 TCCCAGACATGGTCTTACATGTAAT
1 TCCCAGACATGGTCTTACACGTAAT
32843647 TACATCTAGA
Statistics
Matches: 86, Mismatches: 22, Indels: 6
0.75 0.19 0.05
Matches are distributed among these distances:
43 82 0.95
44 4 0.05
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCTCAATACGATGCCAATG
Found at i:32851364 original size:43 final size:43
Alignment explanation
Indices: 32851263--32851365 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
32851253 TCTTTGATAG
* * *
32851263 GGTCTTACACGAAATCATAATACGATGTCAATGTCCCAGACAT
1 GGTCTTACACGTAATCATAATACAATGCCAATGTCCCAGACAT
* *
32851306 GGTTTTACACATAATC-TCAATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCAT-AATACAATGCCAATGTCCCAGACAT
*
32851349 GGTCTTACATGTAATCA
1 GGTCTTACACGTAATCA
32851366 CATCTCGATA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 1 0.02
43 49 0.98
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAATCATAATACAATGCCAATGTCCCAGACAT
Found at i:32852624 original size:13 final size:13
Alignment explanation
Indices: 32852606--32852631 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32852596 TTTAACATAC
32852606 GTCTAGACCGTGT
1 GTCTAGACCGTGT
32852619 GTCTAGACCGTGT
1 GTCTAGACCGTGT
32852632 CAAAATAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.31, T:0.31
Consensus pattern (13 bp):
GTCTAGACCGTGT
Found at i:32853071 original size:10 final size:10
Alignment explanation
Indices: 32853056--32853098 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
32853046 CAATTCACCA
32853056 ACCAAATCAT
1 ACCAAATCAT
*
32853066 ACCAAATCTAA
1 ACCAAATC-AT
32853077 ACCAAAATCAT
1 ACC-AAATCAT
*
32853088 ACCAAAGCAT
1 ACCAAATCAT
32853098 A
1 A
32853099 TGTTTCAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 15 0.54
11 8 0.29
12 5 0.18
ACGTcount: A:0.53, C:0.28, G:0.02, T:0.16
Consensus pattern (10 bp):
ACCAAATCAT
Found at i:32853940 original size:43 final size:43
Alignment explanation
Indices: 32853820--32853974 Score: 140
Period size: 43 Copynumber: 3.6 Consensus size: 43
32853810 AGCTAGTTCA
* *
32853820 ATGCCAACGTCCCAGACATGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTA-ATGTAAATCAAATATCG
* * *
32853863 ATGCCACTGTCCCAGACAG-GGCCTT-ATGCGAAATCAAATAT-G
1 ATGCCAATGTCCCAGAC-GTGGTCTTAATG-TAAATCAAATATCG
* *
32853905 ATGCCAATGTCTCAGACGTGGTCTTAAATGTAAATCATAA-GTCG
1 ATGCCAATGTCCCAGACGTGGTCTT-AATGTAAATCA-AATATCG
* * *
32853949 ATGCCAACGTCCCAAACTTGGTCTTA
1 ATGCCAATGTCCCAGACGTGGTCTTA
32853975 CACGATAACA
Statistics
Matches: 90, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
41 4 0.04
42 21 0.23
43 38 0.42
44 27 0.30
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTAATGTAAATCAAATATCG
Found at i:32858464 original size:40 final size:40
Alignment explanation
Indices: 32858407--32858485 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
32858397 TCAGTCCTCA
*
32858407 GACTTGTTTAATTGAATCGCATAGTCTTTTGCATGCTACC
1 GACTTGTTTAATCGAATCGCATAGTCTTTTGCATGCTACC
*
32858447 GACTTGTTTAATCGAATCGCATAGTCTTTTGCGTGCTAC
1 GACTTGTTTAATCGAATCGCATAGTCTTTTGCATGCTAC
32858486 TGATATTCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (40 bp):
GACTTGTTTAATCGAATCGCATAGTCTTTTGCATGCTACC
Found at i:32860928 original size:42 final size:42
Alignment explanation
Indices: 32860855--32860977 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
32860845 AAGCAATCAT
* * * * *
32860855 ACTAGCACATAAGTGCATCATAAAATGAACCGACGCAAATAG
1 ACTAGCATATAAGTGCATCATCAGATAAACCGAAGCAAATAG
* * * *
32860897 ACTGGCATATAAATGCATCATCAGATAAACCGAAGGAAATAT
1 ACTAGCATATAAGTGCATCATCAGATAAACCGAAGCAAATAG
* * * *
32860939 ACTAGTATGTAAGTGCATCATCGGATAAACCAAAGCAAA
1 ACTAGCATATAAGTGCATCATCAGATAAACCGAAGCAAA
32860978 AATTGGCACT
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.45, C:0.19, G:0.17, T:0.20
Consensus pattern (42 bp):
ACTAGCATATAAGTGCATCATCAGATAAACCGAAGCAAATAG
Found at i:32861208 original size:43 final size:43
Alignment explanation
Indices: 32861133--32861309 Score: 150
Period size: 43 Copynumber: 4.2 Consensus size: 43
32861123 AACTATACTA
*
32861133 GCACACACAGTGCATCA-CTGAACATACTAAAGCAACTATATCG
1 GCACACACAGTGCATCATC-GAACATACCAAAGCAACTATATCG
* * * *
32861176 GCACACACAGTGCATCATCGGACAAACCAAAGCAAATATATTG
1 GCACACACAGTGCATCATCGAACATACCAAAGCAACTATATCG
* * * * * * *
32861219 GCACAC-TA-TGCATAATC-AGATATATCGAAGTATCTATA-CTG
1 GCACACACAGTGCATCATCGA-ACATACCAAAGCAACTATATC-G
* * *
32861260 GCACACATAGTGCATCATCGAAC-TACCAAAGAAACTATACCG
1 GCACACACAGTGCATCATCGAACATACCAAAGCAACTATATCG
32861302 GCACACAC
1 GCACACAC
32861310 TATACATCAT
Statistics
Matches: 104, Mismatches: 23, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
41 27 0.26
42 23 0.22
43 52 0.50
44 2 0.02
ACGTcount: A:0.40, C:0.27, G:0.15, T:0.19
Consensus pattern (43 bp):
GCACACACAGTGCATCATCGAACATACCAAAGCAACTATATCG
Found at i:32861341 original size:85 final size:85
Alignment explanation
Indices: 32861162--32861343 Score: 228
Period size: 85 Copynumber: 2.2 Consensus size: 85
32861152 GAACATACTA
* **
32861162 AAGCAACTATA-TCGGCACACACAGTGCATCATCGGACAAACCAAAGCAAATATATTGGCACACT
1 AAGCAACTATACTCGGCACACACAGTGCATCATCGAACAAACCAAAGCAAATATACCGGCACACT
*
32861226 ATGCATAATCAGATATATCG
66 ATACATAATCAGATATATCG
* * * *
32861246 AAGTATCTATACT-GGCACACATAGTGCATCATCGAAC-TACCAAAG-AAACTATACCGGCACAC
1 AAGCAACTATACTCGGCACACACAGTGCATCATCGAACAAACCAAAGCAAA-TATACCGG--CAC
*
32861308 ACTATACATCATCAGATATATCG
63 ACTATACATAATCAGATATATCG
32861331 AAGCAACTATACT
1 AAGCAACTATACT
32861344 AACATACAGT
Statistics
Matches: 83, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
82 3 0.04
83 13 0.16
84 31 0.37
85 36 0.43
ACGTcount: A:0.40, C:0.25, G:0.14, T:0.21
Consensus pattern (85 bp):
AAGCAACTATACTCGGCACACACAGTGCATCATCGAACAAACCAAAGCAAATATACCGGCACACT
ATACATAATCAGATATATCG
Found at i:32864609 original size:72 final size:72
Alignment explanation
Indices: 32864486--32864626 Score: 185
Period size: 72 Copynumber: 2.0 Consensus size: 72
32864476 TTACACATAG
* *
32864486 AGTGCATCATTGGATATACCAAAGAAACTATACTAGCACACACAATGCATCATCGGAAATACCAA
1 AGTGCATCATTGAATATACCAAAGAAACTATACTAGCACACACAATACATCATCGGAAATACCAA
32864551 AGGACAC
66 AGGACAC
* * * * * * *
32864558 AGTGCATCATTGAATATATCGAAGAAAAC-ATATTGGCACACACAGTACATCATCGGATATGCCA
1 AGTGCATCATTGAATATACCAAAG-AAACTATACTAGCACACACAATACATCATCGGAAATACCA
32864622 AAGGA
65 AAGGA
32864627 TAACCTGTAC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
72 55 0.93
73 4 0.07
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (72 bp):
AGTGCATCATTGAATATACCAAAGAAACTATACTAGCACACACAATACATCATCGGAAATACCAA
AGGACAC
Found at i:32864861 original size:17 final size:15
Alignment explanation
Indices: 32864822--32864851 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
32864812 GTATTGTACG
*
32864822 ATATGTTTCAACTTA
1 ATATATTTCAACTTA
32864837 ATATATTTCAACTTA
1 ATATATTTCAACTTA
32864852 CATTCTATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.03, T:0.47
Consensus pattern (15 bp):
ATATATTTCAACTTA
Found at i:32868635 original size:35 final size:35
Alignment explanation
Indices: 32868566--32868693 Score: 130
Period size: 35 Copynumber: 3.6 Consensus size: 35
32868556 AGTACATCAA
* * *
32868566 CAATCCAACCAAAACACATCAGATGCTCACAAGAGC
1 CAATCCAACTAAAACACACCA-ATGCTCATAAGAGC
*
32868602 CAATCCATCTAAAACACACCAATGCTCATAAGAGC
1 CAATCCAACTAAAACACACCAATGCTCATAAGAGC
* *** * *
32868637 TAATCCCTTTGAAACACACCAATGCTCATAAAAGC
1 CAATCCAACTAAAACACACCAATGCTCATAAGAGC
* * *
32868672 TAATCCAACTGAAACCCACCAA
1 CAATCCAACTAAAACACACCAA
32868694 AACAGAAAGT
Statistics
Matches: 79, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
35 61 0.77
36 18 0.23
ACGTcount: A:0.43, C:0.32, G:0.09, T:0.16
Consensus pattern (35 bp):
CAATCCAACTAAAACACACCAATGCTCATAAGAGC
Found at i:32870156 original size:35 final size:35
Alignment explanation
Indices: 32869983--32870162 Score: 186
Period size: 35 Copynumber: 5.1 Consensus size: 35
32869973 GGCTGTTATA
*
32869983 GGTGTTGTGG-TGAAATATTAAATGAATGAAGTAAC
1 GGTGTTGTGGCAG-AATATTAAATGAATGAAGTAAC
** * *
32870018 AATGTTGTAGCAGAATATTAAATGAATGAAGTAAG
1 GGTGTTGTGGCAGAATATTAAATGAATGAAGTAAC
32870053 GGTGTTGTGGC-GAAATATTAAAAT-AATGAAGTAAC
1 GGTGTTGTGGCAG-AATATT-AAATGAATGAAGTAAC
* ** * *
32870088 AGTGTTGTGGTGGGATATTAAATGAATGAAGTATC
1 GGTGTTGTGGCAGAATATTAAATGAATGAAGTAAC
* * * *
32870123 GGTGTTGTGGCAGTATGTTAAAAGAATGAAGTATC
1 GGTGTTGTGGCAGAATATTAAATGAATGAAGTAAC
32870158 GGTGT
1 GGTGT
32870163 AGTAACGGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
34 5 0.04
35 110 0.91
36 6 0.05
ACGTcount: A:0.36, C:0.04, G:0.29, T:0.31
Consensus pattern (35 bp):
GGTGTTGTGGCAGAATATTAAATGAATGAAGTAAC
Found at i:32870173 original size:70 final size:70
Alignment explanation
Indices: 32869983--32870198 Score: 227
Period size: 70 Copynumber: 3.1 Consensus size: 70
32869973 GGCTGTTATA
* * * * * * *
32869983 GGTGTTGTGGTGAAATATTAAATGAATGAAGTAACAATGTTGTAGCAGAATATTAAATGAATGAA
1 GGTGTTGTGGCGAAATATTAAAAGAATGAAGTAACAGTGTAGTAACGGGATATTAAATGAATGAA
**
32870048 GTAAG
66 GTATC
* * ***
32870053 GGTGTTGTGGCGAAATATTAAAATAATGAAGTAACAGTGTTGTGGTGGGATATTAAATGAATGAA
1 GGTGTTGTGGCGAAATATTAAAAGAATGAAGTAACAGTGTAGTAACGGGATATTAAATGAATGAA
32870118 GTATC
66 GTATC
* * * * * * *
32870123 GGTGTTGTGGC-AGTATGTTAAAAGAATGAAGTATCGGTGTAGTAACGGGATGTTAATTGAAAGA
1 GGTGTTGTGGCGA-AATATTAAAAGAATGAAGTAACAGTGTAGTAACGGGATATTAAATGAATGA
32870187 AGTATC
65 AGTATC
32870193 GGTGTT
1 GGTGTT
32870199 CTAGAAAAAT
Statistics
Matches: 123, Mismatches: 22, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
69 1 0.01
70 122 0.99
ACGTcount: A:0.36, C:0.04, G:0.29, T:0.31
Consensus pattern (70 bp):
GGTGTTGTGGCGAAATATTAAAAGAATGAAGTAACAGTGTAGTAACGGGATATTAAATGAATGAA
GTATC
Found at i:32870176 original size:35 final size:35
Alignment explanation
Indices: 32870099--32870197 Score: 117
Period size: 35 Copynumber: 2.8 Consensus size: 35
32870089 GTGTTGTGGT
* * **
32870099 GGGATATTAAATGAATGAAGTATCGGTGTTGTGGC
1 GGGATGTTAAATGAATGAAGTATCGGTGTAGTAAC
* * *
32870134 AGTATGTTAAAAGAATGAAGTATCGGTGTAGTAAC
1 GGGATGTTAAATGAATGAAGTATCGGTGTAGTAAC
* *
32870169 GGGATGTTAATTGAAAGAAGTATCGGTGT
1 GGGATGTTAAATGAATGAAGTATCGGTGT
32870198 TCTAGAAAAA
Statistics
Matches: 52, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.33, C:0.05, G:0.31, T:0.30
Consensus pattern (35 bp):
GGGATGTTAAATGAATGAAGTATCGGTGTAGTAAC
Found at i:32873064 original size:37 final size:37
Alignment explanation
Indices: 32873014--32873092 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
32873004 TTATTACGAA
* * *
32873014 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
32873051 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
32873088 GTCTT
1 GTCTT
32873093 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:32873289 original size:47 final size:47
Alignment explanation
Indices: 32873211--32873717 Score: 863
Period size: 47 Copynumber: 10.7 Consensus size: 47
32873201 CCCTTCGGGA
* * * * * *
32873211 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32873258 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32873305 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32873352 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32873399 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32873446 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32873493 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32873542 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32873589 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32873636 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32873683 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
32873718 AGAATCCTAA
Statistics
Matches: 440, Mismatches: 17, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 392 0.89
49 47 0.11
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32873588 original size:190 final size:190
Alignment explanation
Indices: 32873211--32873696 Score: 859
Period size: 190 Copynumber: 2.6 Consensus size: 190
32873201 CCCTTCGGGA
* * * * * * * *
32873211 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
32873276 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTTATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
*
32873339 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32873399 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32873464 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
32873529 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32873589 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
32873654 TTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
32873697 GCATGTTCAC
Statistics
Matches: 285, Mismatches: 11, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
188 94 0.33
190 191 0.67
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32873757 original size:237 final size:235
Alignment explanation
Indices: 32873266--32873717 Score: 798
Period size: 237 Copynumber: 1.9 Consensus size: 235
32873256 GCCCTGTCAC
32873266 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
* *
32873331 TTATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTA
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
32873396 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
131 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
* * * *
32873461 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
196 CACTTTCACATCCATCACATCAG-CA-TAGGCCTAATCAAAT
32873503 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
32873568 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
66 TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
* *
32873633 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATG
131 GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
32873698 CA-TGTTCACATCCATCACAT
196 CACT-TTCACATCCATCACAT
32873718 AGAATCCTAA
Statistics
Matches: 209, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
236 1 0.00
237 208 1.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (235 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACAT
TCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACTTTCACATCCATCACATCAGCATAGGCCTAATCAAAT
Found at i:32877584 original size:40 final size:40
Alignment explanation
Indices: 32877540--32877811 Score: 418
Period size: 40 Copynumber: 6.8 Consensus size: 40
32877530 CCAGCATGAT
* * *
32877540 TGCTCTTTGGGACCTAGCCCGGATATAACACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
32877580 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
32877620 TGCTCTTCGGGATTTAACCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
32877660 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
32877700 TGCTCTTCGGGACTTAGCCTGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
32877740 TGCTCTTCGGGACTTAGCTCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
32877780 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
32877812 CTCAATTCTC
Statistics
Matches: 207, Mismatches: 25, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 207 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:32877797 original size:23 final size:23
Alignment explanation
Indices: 32877731--32877797 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
32877721 GATATATCAC
32877731 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
* * * *
32877754 TAGCTCGGAT-AT-ATC---AC-
1 TAGCACGAATGCTCTTCGGGACT
32877771 TAGCACGAATGCTCTTCGGGACT
1 TAGCACGAATGCTCTTCGGGACT
32877794 TAGC
1 TAGC
32877798 CCGGATATAT
Statistics
Matches: 30, Mismatches: 8, Indels: 12
0.60 0.16 0.24
Matches are distributed among these distances:
17 8 0.27
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 12 0.40
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (23 bp):
TAGCACGAATGCTCTTCGGGACT
Done.