Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 109 of 290
Found at i:33832412 original size:30 final size:27
Alignment explanation
Indices: 33832365--33832419 Score: 83
Period size: 30 Copynumber: 1.9 Consensus size: 27
33832355 ATACTTATGG
33832365 TTTTTTTTGTCCTATATTGGTACCCAA
1 TTTTTTTTGTCCTATATTGGTACCCAA
33832392 TTTTTTTCTGTCAACTATATTGGTACCC
1 TTTTTTT-TGTC--CTATATTGGTACCC
33832420 GAACCTAACG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 7 0.28
28 4 0.16
30 14 0.56
ACGTcount: A:0.18, C:0.20, G:0.11, T:0.51
Consensus pattern (27 bp):
TTTTTTTTGTCCTATATTGGTACCCAA
Found at i:33833607 original size:26 final size:26
Alignment explanation
Indices: 33833578--33833685 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
33833568 TGGTACAAAT
33833578 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
33833604 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
33833630 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
33833656 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
33833682 TGAT
1 TGAT
33833686 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:33835322 original size:27 final size:28
Alignment explanation
Indices: 33835282--33835422 Score: 145
Period size: 27 Copynumber: 5.2 Consensus size: 28
33835272 AGGAAGCGTC
* *
33835282 CTGGTGGCTATGCCACAATTATCTGAGT
1 CTGGTGGCTCTGCCACAATTATCTGAAT
33835310 -TGGTGGCTCTGCCAC-ATATATCTG--T
1 CTGGTGGCTCTGCCACAAT-TATCTGAAT
*
33835335 CTTGGTGGCTATGCCACAATTATCT-AAT
1 C-TGGTGGCTCTGCCACAATTATCTGAAT
*
33835363 CTGGTGGCTCTGCCAC-ATATATCTG-TT
1 CTGGTGGCTCTGCCACAAT-TATCTGAAT
* *
33835390 CTGGTGGCTCTACCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGAAT
33835417 CTGGTG
1 CTGGTG
33835423 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 6, Indels: 21
0.78 0.05 0.17
Matches are distributed among these distances:
25 1 0.01
26 10 0.10
27 81 0.84
28 5 0.05
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGAAT
Found at i:33835368 original size:54 final size:55
Alignment explanation
Indices: 33835282--33835422 Score: 209
Period size: 54 Copynumber: 2.6 Consensus size: 55
33835272 AGGAAGCGTC
*
33835282 CTGGTGGCTATGCCACAATTATCTGAGT-TGGTGGCTCTGCCACATATATCTG-T
1 CTGGTGGCTATGCCACAATTATCTGAATCTGGTGGCTCTGCCACATATATCTGTT
33835335 CTTGGTGGCTATGCCACAATTATCT-AATCTGGTGGCTCTGCCACATATATCTGTT
1 C-TGGTGGCTATGCCACAATTATCTGAATCTGGTGGCTCTGCCACATATATCTGTT
* * *
33835390 CTGGTGGCTCTACCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTGAATCTGGTG
33835423 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 4, Indels: 7
0.88 0.04 0.08
Matches are distributed among these distances:
53 8 0.10
54 70 0.88
55 2 0.03
ACGTcount: A:0.19, C:0.23, G:0.23, T:0.35
Consensus pattern (55 bp):
CTGGTGGCTATGCCACAATTATCTGAATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:33835434 original size:81 final size:80
Alignment explanation
Indices: 33835282--33835439 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 80
33835272 AGGAAGCGTC
* * *
33835282 CTGGTGGCTATGCCACAATTATCTGAGTTGGTGGCTCTGCCACATATATCTGTCTTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGAGTTGGTGGCTCTACCACATATATCTGTATTGGTGACTAT
33835347 GCCACAATTATCTAAT
66 GCCACAA-TATCTAAT
* *
33835363 CTGGTGGCTCTGCCAC-ATATATCTG-TTCTGGTGGCTCTACCACA-ATATCTGTATCTGGTGAC
1 CTGGTGGCTATGCCACAAT-TATCTGAGT-TGGTGGCTCTACCACATATATCTGTAT-TGGTGAC
*
33835425 T-TCGTCACAATATCT
63 TAT-GCCACAATATCT
33835440 GGCAGCCTCG
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
80 18 0.27
81 49 0.73
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGAGTTGGTGGCTCTACCACATATATCTGTATTGGTGACTAT
GCCACAATATCTAAT
Found at i:33836864 original size:16 final size:16
Alignment explanation
Indices: 33836843--33836880 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
33836833 AAGGATGAAC
*
33836843 AAATGAGAA-AGGTTGA
1 AAATGA-AAGAGGTAGA
33836859 AAATGAAAGAGGTAGA
1 AAATGAAAGAGGTAGA
33836875 AAATGA
1 AAATGA
33836881 TTAAAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.55, C:0.00, G:0.29, T:0.16
Consensus pattern (16 bp):
AAATGAAAGAGGTAGA
Found at i:33836928 original size:15 final size:15
Alignment explanation
Indices: 33836908--33836937 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33836898 TAGTGAAAGG
33836908 AAAAATGTTAAGGGA
1 AAAAATGTTAAGGGA
*
33836923 AAAAATTTTAAGGGA
1 AAAAATGTTAAGGGA
33836938 TTTTTTAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.53, C:0.00, G:0.23, T:0.23
Consensus pattern (15 bp):
AAAAATGTTAAGGGA
Found at i:33840605 original size:20 final size:20
Alignment explanation
Indices: 33840546--33841024 Score: 148
Period size: 20 Copynumber: 24.1 Consensus size: 20
33840536 AATTATTGAA
*
33840546 TGATTGCACTTACGTGCCCT
1 TGATTGCACTTACGTGCCCC
* * *
33840566 TGTTTGTACTT-CGGTACCCC
1 TGATTGCACTTAC-GTGCCCC
33840586 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTACGTGCCCC
*
33840606 T-ATTTGTACTT-CGGTGCCCC
1 TGA-TTGCACTTAC-GTGCCCC
33840626 TGATTGCACTTACGTG-CCC
1 TGATTGCACTTACGTGCCCC
* ** * * *
33840645 TTATTTGTC-CTTTGGTACACT
1 TGA-TTG-CACTTACGTGCCCC
* *
33840666 TGATTGCACTAATGTGCCCC
1 TGATTGCACTTACGTGCCCC
* * ** * *
33840686 TGTTTGTACTTGGGTACCCT
1 TGATTGCACTTACGTGCCCC
*
33840706 TGATTGCAGTTACGTG-CCC
1 TGATTGCACTTACGTGCCCC
* * ** * * *
33840725 TTATTTGTACTTTGGTACACT
1 TGA-TTGCACTTACGTGCCCC
* *
33840746 TGATTGCACTTATGTGCCTC
1 TGATTGCACTTACGTGCCCC
* * ** *
33840766 TGTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCC
*
33840786 TGATTGCACTTATGTG-CCC
1 TGATTGCACTTACGTGCCCC
* * * * *
33840805 TTATTTGTA-TTTCGGTACCCT
1 TGA-TTGCACTTAC-GTGCCCC
* * *
33840826 TGATTGCACCTACATGCCCA
1 TGATTGCACTTACGTGCCCC
* * * *
33840846 TGTTTGTACTT-CG-GAACCT
1 TGATTGCACTTACGTG-CCCC
33840865 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTACGTGCCCC
* * *
33840885 TGTTTGTACTT-CG-GTACCC
1 TGATTGCACTTACGTG-CCCC
33840904 TGATTGCACTTACGTGCCCC
1 TGATTGCACTTACGTGCCCC
* * * *
33840924 TGTTTGTACTT-CAGTACCCT
1 TGATTGCACTTAC-GTGCCCC
* *
33840944 TGAATGCACAT-CTGTGCCCC
1 TGATTGCACTTAC-GTGCCCC
*
33840964 T-ATTTGCACTT-CGATACCCC
1 TGA-TTGCACTTACG-TGCCCC
* *
33840984 TGATTGCACATT-TGTGCTCC
1 TGATTGCAC-TTACGTGCCCC
* *
33841004 TGATTACACTT-GGTGCCCC
1 TGATTGCACTTACGTGCCCC
33841023 TG
1 TG
33841025 TTATGCATCT
Statistics
Matches: 320, Mismatches: 112, Indels: 55
0.66 0.23 0.11
Matches are distributed among these distances:
18 2 0.01
19 59 0.18
20 237 0.74
21 22 0.07
ACGTcount: A:0.15, C:0.28, G:0.19, T:0.38
Consensus pattern (20 bp):
TGATTGCACTTACGTGCCCC
Found at i:33841000 original size:40 final size:40
Alignment explanation
Indices: 33840546--33840992 Score: 531
Period size: 40 Copynumber: 11.2 Consensus size: 40
33840536 AATTATTGAA
* *
33840546 TGATTGCACTTACGTGCCCTTGTTTGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
* * *
33840586 TGATTGCACTTACGTGCCCCTATTTGTACTTCGGTGCCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * * *
33840626 TGATTGCACTTACGTGCCCTTATTTGTCCTTTGGTACACT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
* * *
33840666 TGATTGCACTAATGTGCCCCTGTTTGTACTTGGGTACCCT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * * *
33840706 TGATTGCAGTTACGTGCCCTTATTTGTACTTTGGTACACT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * *
33840746 TGATTGCACTTATGTGCCTCTGTTTGTACTTTGGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * *
33840786 TGATTGCACTTATGTGCCCTTATTTGTATTTCGGTACCCT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * *
33840826 TGATTGCACCTACATGCCCATGTTTGTACTTCGG-AACCT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
33840865 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCC-
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
*
33840904 TGATTGCACTTACGTGCCCCTGTTTGTACTTCAGTACCCT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
* * * * * *
33840944 TGAATGCACAT-CTGTGCCCCTATTTGCACTTCGATACCCC
1 TGATTGCACTTAC-GTGCCCCTGTTTGTACTTCGGTACCCT
33840984 TGATTGCAC
1 TGATTGCAC
33840993 ATTTGTGCTC
Statistics
Matches: 348, Mismatches: 56, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
39 74 0.21
40 274 0.79
ACGTcount: A:0.15, C:0.28, G:0.19, T:0.38
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCT
Found at i:33841805 original size:20 final size:19
Alignment explanation
Indices: 33841762--33841817 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
33841752 AAGTTTATGT
* *
33841762 TAAGTAAATGACATGTAAAG
1 TAAGTAAATGA-ATGGAAAA
33841782 TAAGTAAATAGAATGGAAAA
1 TAAGTAAAT-GAATGGAAAA
*
33841802 TAAGCAAATGGAATGG
1 TAAGTAAAT-GAATGG
33841818 TTCATGATCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 29 0.94
21 2 0.06
ACGTcount: A:0.52, C:0.04, G:0.23, T:0.21
Consensus pattern (19 bp):
TAAGTAAATGAATGGAAAA
Found at i:33844687 original size:17 final size:16
Alignment explanation
Indices: 33844635--33844689 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 16
33844625 TAGGAATGAT
*
33844635 ATATTAT-ATTATTTC
1 ATATTATGATTATTTA
* *
33844650 ATATTTTTATTA-TTA
1 ATATTATGATTATTTA
33844665 AT-TTATGATTATTGTA
1 ATATTATGATTATT-TA
33844681 ATATTATGA
1 ATATTATGA
33844690 AGATCAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
14 7 0.22
15 11 0.34
16 8 0.25
17 6 0.19
ACGTcount: A:0.35, C:0.02, G:0.05, T:0.58
Consensus pattern (16 bp):
ATATTATGATTATTTA
Found at i:33846990 original size:21 final size:21
Alignment explanation
Indices: 33846947--33846991 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
33846937 ATTTTGATGA
**
33846947 TTGATGATAGATTATAATTTT
1 TTGATGATAGATTATAAAGTT
33846968 TTGATGATAG-TTATACAAGTT
1 TTGATGATAGATTATA-AAGTT
33846989 TTG
1 TTG
33846992 TTAAGTGATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.31, C:0.02, G:0.18, T:0.49
Consensus pattern (21 bp):
TTGATGATAGATTATAAAGTT
Found at i:33848876 original size:27 final size:26
Alignment explanation
Indices: 33848828--33848887 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
33848818 GCGAGGCTGC
*
33848828 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
33848855 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
33848881 CAGATAT
1 CAGATAT
33848888 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:33848900 original size:33 final size:32
Alignment explanation
Indices: 33848849--33848912 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
33848839 ACGAAGTCAC
* *
33848849 CAGATACAGATATTGTGGCTAGGCCACCAGAA
1 CAGATACAGATATTGTGGCAAAGCCACCAGAA
* *
33848881 CAGATATATATATATGTGGCAAAGCCACCAGA
1 CAGATACAGATAT-TGTGGCAAAGCCACCAGA
33848913 TTGCAGCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (32 bp):
CAGATACAGATATTGTGGCAAAGCCACCAGAA
Found at i:33850808 original size:12 final size:12
Alignment explanation
Indices: 33850793--33850855 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
33850783 TGTTATCAAT
33850793 TTATTATTATAA
1 TTATTATTATAA
**
33850805 TTATTATTATGGT
1 TTATTATTAT-AA
*
33850818 TTTTTATT-TAA
1 TTATTATTATAA
*
33850829 ATATTATTATTAA
1 TTATTATTA-TAA
33850842 -TATTATTAT-A
1 TTATTATTATAA
33850852 TTAT
1 TTAT
33850856 GAAATAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
10 1 0.03
11 10 0.25
12 19 0.47
13 10 0.25
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (12 bp):
TTATTATTATAA
Found at i:33851126 original size:24 final size:23
Alignment explanation
Indices: 33851099--33851155 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
33851089 TATGCATTTG
33851099 TTATTAAATAGATATT-TATTATAA
1 TTATTAAATAG-TATTATATTA-AA
* *
33851123 TTATTATTATAGTTTTATATTAAA
1 TTATTA-AATAGTATTATATTAAA
33851147 TTATTAAAT
1 TTATTAAAT
33851156 TATGATTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
23 2 0.07
24 17 0.61
25 9 0.32
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (23 bp):
TTATTAAATAGTATTATATTAAA
Found at i:33851128 original size:3 final size:3
Alignment explanation
Indices: 33851114--33851193 Score: 53
Period size: 3 Copynumber: 28.0 Consensus size: 3
33851104 AAATAGATAT
* * *
33851114 TTA TTA TAA TTA TTA TTA -TA GTT- TTA -TA TTA -AA TTA TTA -AA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
33851155 TTA TGA TTA TGA TTA TGA TTA TGA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33851194 AAATAAATTA
Statistics
Matches: 57, Mismatches: 14, Indels: 12
0.69 0.17 0.14
Matches are distributed among these distances:
2 8 0.14
3 48 0.84
4 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:33851131 original size:12 final size:12
Alignment explanation
Indices: 33851114--33851193 Score: 63
Period size: 12 Copynumber: 6.5 Consensus size: 12
33851104 AAATAGATAT
33851114 TTATTATAATTA
1 TTATTATAATTA
* *
33851126 TTATTATAGTTT
1 TTATTATAATTA
33851138 TATATTA-AATTA
1 T-TATTATAATTA
*
33851150 TTAAATTATGATTA
1 TT--ATTATAATTA
* *
33851164 TGATTATGATTA
1 TTATTATAATTA
* *
33851176 TGATTATTATTA
1 TTATTATAATTA
33851188 TTATTA
1 TTATTA
33851194 AAATAAATTA
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
11 1 0.02
12 41 0.73
13 9 0.16
14 5 0.09
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (12 bp):
TTATTATAATTA
Found at i:33851327 original size:3 final size:3
Alignment explanation
Indices: 33851319--33851367 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
33851309 GTGAATTAAA
* *
33851319 TAT TAT TA- TAT TA- TAT TAT TAT TAT AAT GTAT TAT TAT TAA TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT
33851363 TAT TA
1 TAT TA
33851368 ACTAATATAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 4 0.10
3 33 0.85
4 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:33851336 original size:13 final size:13
Alignment explanation
Indices: 33851318--33851367 Score: 50
Period size: 13 Copynumber: 3.7 Consensus size: 13
33851308 TGTGAATTAA
33851318 ATATTATTATATT
1 ATATTATTATATT
33851331 ATATTA-T-TATT
1 ATATTATTATATT
33851342 ATAATGTATTATTATT
1 AT-AT-TATTA-TATT
33851358 AATATTATTA
1 -ATATTATTA
33851368 ACTAATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
11 6 0.19
12 3 0.10
13 8 0.26
14 1 0.03
15 5 0.16
16 6 0.19
17 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (13 bp):
ATATTATTATATT
Found at i:33851340 original size:16 final size:16
Alignment explanation
Indices: 33851319--33851365 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
33851309 GTGAATTAAA
33851319 TATTATTATATTATAT
1 TATTATTATATTATAT
* *
33851335 TATTATTATAATGTAT
1 TATTATTATATTATAT
33851351 TATTATTAATATTAT
1 TATTATT-ATATTAT
33851366 TAACTAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
16 21 0.81
17 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATTATTATATTATAT
Found at i:33851343 original size:19 final size:21
Alignment explanation
Indices: 33851319--33851365 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
33851309 GTGAATTAAA
33851319 TATTATTATAT-TA-TATTAT
1 TATTATTATATGTATTATTAT
33851338 TATTA-TA-ATGTATTATTAT
1 TATTATTATATGTATTATTAT
*
33851357 TAATATTAT
1 TATTATTAT
33851366 TAACTAATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 2 0.09
18 4 0.17
19 15 0.65
20 2 0.09
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TATTATTATATGTATTATTAT
Found at i:33852608 original size:18 final size:18
Alignment explanation
Indices: 33852537--33852625 Score: 73
Period size: 18 Copynumber: 5.1 Consensus size: 18
33852527 AGAAAGTGGA
*
33852537 AAAGTGAATTTG-AATTG
1 AAAGTGAAATTGAAATTG
33852554 -AA-TGAGAATTG-AATTG
1 AAAGTGA-AATTGAAATTG
* *
33852570 AATTGTG-AATTTAAATTG
1 AA-AGTGAAATTGAAATTG
33852588 AAAGTGAAATTGAAATTG
1 AAAGTGAAATTGAAATTG
*
33852606 AAAGTG-ATTTGAAATGTG
1 AAAGTGAAATTGAAAT-TG
33852624 AA
1 AA
33852626 TTTGGAGACC
Statistics
Matches: 59, Mismatches: 6, Indels: 13
0.76 0.08 0.17
Matches are distributed among these distances:
15 3 0.05
16 11 0.19
17 16 0.27
18 27 0.46
19 2 0.03
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.34
Consensus pattern (18 bp):
AAAGTGAAATTGAAATTG
Found at i:33852619 original size:11 final size:13
Alignment explanation
Indices: 33852535--33852629 Score: 59
Period size: 12 Copynumber: 8.1 Consensus size: 13
33852525 CTAGAAAGTG
*
33852535 GAAAAGTGAATTT
1 GAAATGTGAATTT
33852548 G-AAT-TGAA--T
1 GAAATGTGAATTT
33852557 GAGAAT-TGAA-TT
1 GA-AATGTGAATTT
*
33852569 GAATTGTGAATTT
1 GAAATGTGAATTT
**
33852582 -AAAT-TGAAAGT
1 GAAATGTGAATTT
*
33852593 GAAAT-TGAAATT
1 GAAATGTGAATTT
33852605 GAAA-GTG-ATTT
1 GAAATGTGAATTT
33852616 GAAATGTGAATTT
1 GAAATGTGAATTT
33852629 G
1 G
33852630 GAGACCCTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 18
0.73 0.08 0.20
Matches are distributed among these distances:
9 2 0.03
11 25 0.38
12 31 0.47
13 8 0.12
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (13 bp):
GAAATGTGAATTT
Found at i:33853938 original size:69 final size:70
Alignment explanation
Indices: 33853823--33853955 Score: 225
Period size: 69 Copynumber: 1.9 Consensus size: 70
33853813 TAGTTTATTA
* *
33853823 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGA-AAAATTTATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAA-TTATGGT
33853887 ACTTAG
65 ACTTAG
33853893 CTAATTAATATGCTGCTGTAATACT-TAAATTATTGGCTGTCCAAATTAGGACAAAATTATGGT
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATTATGGT
33853956 GTTATGTGCT
Statistics
Matches: 60, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
69 33 0.55
70 27 0.45
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATTATGGTA
CTTAG
Found at i:33855073 original size:119 final size:119
Alignment explanation
Indices: 33854733--33855122 Score: 480
Period size: 119 Copynumber: 3.3 Consensus size: 119
33854723 TTAAGGTTCG
* * ** *
33854733 CAGGCTTCGTGCGGGAATTGTATCCGGACTT-AAGGTCCGCAAGCTTCGTGCTGGAATTGTATCC
1 CAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCC
* * *
33854797 GGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCG
66 GGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATTCGGGCTTAAAGACCCA
* * *
33854851 CAGGCTAT-ATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTGTATC
1 CAGGCT-TCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATC
* *
33854915 CAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATTCGGGCTTAAAGACCTA
65 CGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATTCGGGCTTAAAGACCCA
* *
33854970 CAGGCTTCGTGCTAGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCC
1 CAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCC
* * * * * * * ** *
33855035 GGACTTAAGATCCGTAGGCTTCATGCTGGTACTATATTCGGACTT-AAGGTCCG
66 GGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATTCGGGCTTAAAGACCCA
* * * * *
33855088 CAGGCTTCGTACTGGTACTATATCCGAGCTTAAAG
1 CAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAG
33855123 TCCTGTAGGG
Statistics
Matches: 232, Mismatches: 37, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
118 58 0.25
119 174 0.75
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.28
Consensus pattern (119 bp):
CAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCC
GGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATTCGGGCTTAAAGACCCA
Found at i:33855120 original size:39 final size:39
Alignment explanation
Indices: 33854714--33855102 Score: 438
Period size: 39 Copynumber: 9.9 Consensus size: 39
33854704 ATTTGATGTA
* *
33854714 TATCCGGACTTAAGGTTCGCAGGCTTCGTGCGGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
33854753 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
33854792 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** * *
33854831 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGACTT-AAGGTCCGCAGGCT-TCGTGCTGGAATTG
* ** *
33854871 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
*
33854911 TATCCAGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
33854950 TATTCGGGCTTAAAGACCTACAGGCTTCGTGCTAGAATTG
1 TATCCGGACTTAAGGTCC-GCAGGCTTCGTGCTGGAATTG
* * **
33854990 TATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * * *
33855030 TATCCGGACTTAAGATCCGTAGGCTTCATGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* *
33855069 TATTCGGACTTAAGGTCCGCAGGCTTCGTACTGG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
33855103 TACTATATCC
Statistics
Matches: 302, Mismatches: 43, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
39 175 0.58
40 122 0.40
41 5 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:33861828 original size:12 final size:13
Alignment explanation
Indices: 33861812--33861846 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
33861802 TAAATTGAGC
33861812 CATAAATATTTTT
1 CATAAATATTTTT
33861825 -ATAAAT-TTTTT
1 CATAAATATTTTT
33861836 CATAAATATTT
1 CATAAATATTT
33861847 AAGGAGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 5 0.25
12 12 0.60
13 3 0.15
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (13 bp):
CATAAATATTTTT
Found at i:33862136 original size:22 final size:20
Alignment explanation
Indices: 33862092--33862136 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
33862082 AATTTTATTA
* *
33862092 TTAAAATAAAAGAAAAAAGG
1 TTAAAAAAAAAGAAAAAAAG
33862112 TTAAAAAAATAAGAAACAAAAG
1 TTAAAAAAA-AAGAAA-AAAAG
33862134 TTA
1 TTA
33862137 TCTTCCTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 8 0.38
21 6 0.29
22 7 0.33
ACGTcount: A:0.69, C:0.02, G:0.11, T:0.18
Consensus pattern (20 bp):
TTAAAAAAAAAGAAAAAAAG
Found at i:33862913 original size:40 final size:39
Alignment explanation
Indices: 33862856--33863066 Score: 208
Period size: 40 Copynumber: 5.3 Consensus size: 39
33862846 AATTATTGAA
* * *
33862856 TGATTGCATTTATGTGCCCCTGTTTGTACTTTGGTACCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCC
* *
33862895 TTGATTGCACTTACGTGCCCCTATTTATACTTCGGTACCGC
1 -TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACC-C
* *
33862936 TGATTGCACTTACGTGCCCCCGTTTGTACTTCGGTACCTT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACC-C
* * * * *
33862976 TAATTGTACTTATGTGCCCTTGTTTGTACTTCAGTACCCC
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTA-CCC
* * * *
33863016 TGAATGCACAT-CTTTGCCCCTGTTTGCACTTCGGTACTCC
1 TGATTGCACTTAC-GTGCCCCTGTTTGTACTTCGGTAC-CC
*
33863056 TAATTGCACTT
1 TGATTGCACTT
33863067 GGTACCCCAG
Statistics
Matches: 138, Mismatches: 29, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
39 1 0.01
40 134 0.97
41 3 0.02
ACGTcount: A:0.16, C:0.27, G:0.18, T:0.39
Consensus pattern (39 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCC
Found at i:33862993 original size:80 final size:80
Alignment explanation
Indices: 33862856--33863066 Score: 237
Period size: 80 Copynumber: 2.6 Consensus size: 80
33862846 AATTATTGAA
* * * *
33862856 TGATTGCATTTATGTGCCCCTGTTTGTACTTTGGTACCCTTGATTGCACTTACGTGCCCCTATTT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCTTAATTGCACTTACGTGCCCCTATTT
* *
33862921 ATACTTCGGTACCGC
66 ATACTTCAGTACCCC
* * * * * *
33862936 TGATTGCACTTACGTGCCCCCGTTTGTACTTCGGTACCTTTAATTGTACTTATGTGCCCTTGTTT
1 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCTTAATTGCACTTACGTGCCCCTATTT
*
33863001 GTACTTCAGTACCCC
66 ATACTTCAGTACCCC
* * * *
33863016 TGAATGCACAT-CTTTGCCCCTGTTTGCACTTCGGTACTCC-TAATTGCACTT
1 TGATTGCACTTAC-GTGCCCCTGTTTGTACTTCGGTAC-CCTTAATTGCACTT
33863067 GGTACCCCAG
Statistics
Matches: 109, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 107 0.98
81 1 0.01
ACGTcount: A:0.16, C:0.27, G:0.18, T:0.39
Consensus pattern (80 bp):
TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCTTAATTGCACTTACGTGCCCCTATTT
ATACTTCAGTACCCC
Found at i:33863853 original size:20 final size:19
Alignment explanation
Indices: 33863810--33863865 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
33863800 AAGTTTATGT
* *
33863810 TAAGTAAATGATATGTAAAG
1 TAAGTAAATGA-ATGGAAAA
33863830 TAAGTAAATAGAATGGAAAA
1 TAAGTAAAT-GAATGGAAAA
*
33863850 TAAGCAAATGGAATGG
1 TAAGTAAAT-GAATGG
33863866 TTTATATCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 29 0.94
21 2 0.06
ACGTcount: A:0.52, C:0.02, G:0.23, T:0.23
Consensus pattern (19 bp):
TAAGTAAATGAATGGAAAA
Found at i:33864780 original size:43 final size:42
Alignment explanation
Indices: 33864681--33864782 Score: 123
Period size: 43 Copynumber: 2.4 Consensus size: 42
33864671 AACGGCCTAA
* * * *
33864681 GACACGGATGTGTGTCTCAGCTGTGTGTGACACATGGCCATGC
1 GACACGG-TGTGTGTCTCAGCCGTGTATCACACACGGCCATGC
* *
33864724 GACATGGTCGTGTGTCTCAGCCGTGTATCACACACGGCCATGT
1 GACACGGT-GTGTGTCTCAGCCGTGTATCACACACGGCCATGC
33864767 GACACGGCTGTGTGTC
1 GACACGG-TGTGTGTC
33864783 CCTTGTAGGT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 1 0.02
43 48 0.96
44 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.31, T:0.25
Consensus pattern (42 bp):
GACACGGTGTGTGTCTCAGCCGTGTATCACACACGGCCATGC
Found at i:33874259 original size:25 final size:25
Alignment explanation
Indices: 33874231--33874281 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
33874221 AAATTGAAAG
33874231 AAAGTTAAAGTTTTTATAAAATCCT
1 AAAGTTAAAGTTTTTATAAAATCCT
33874256 AAAGTTAAAGTTTTTATAAAATCCT
1 AAAGTTAAAGTTTTTATAAAATCCT
33874281 A
1 A
33874282 CTTTGTTAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (25 bp):
AAAGTTAAAGTTTTTATAAAATCCT
Found at i:33891589 original size:19 final size:17
Alignment explanation
Indices: 33891562--33891608 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
33891552 ACAAAGCCCG
*
33891562 ATAAGTGATAATGCCTGAA
1 ATAAATGATAATG-CT-AA
*
33891581 ATAAATGATAATGCTCA
1 ATAAATGATAATGCTAA
33891598 ATAAATGATAA
1 ATAAATGATAA
33891609 ATGATAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 12 0.46
18 2 0.08
19 12 0.46
ACGTcount: A:0.49, C:0.09, G:0.15, T:0.28
Consensus pattern (17 bp):
ATAAATGATAATGCTAA
Found at i:33892564 original size:21 final size:21
Alignment explanation
Indices: 33892540--33892611 Score: 54
Period size: 23 Copynumber: 3.2 Consensus size: 21
33892530 AAGTTCTGAT
33892540 ATGAAATAATCAGAACTCGAG
1 ATGAAATAATCAGAACTCGAG
* * * * * *
33892561 ATGAATTATTATGAAAATATATGAT
1 ATGAA--ATAATCAGAA-CT-CGAG
33892586 ATGAAATAATCAGAACTCGAG
1 ATGAAATAATCAGAACTCGAG
33892607 ATGAA
1 ATGAA
33892612 TTATTATGAA
Statistics
Matches: 35, Mismatches: 12, Indels: 8
0.64 0.22 0.15
Matches are distributed among these distances:
21 12 0.34
22 1 0.03
23 14 0.40
24 1 0.03
25 7 0.20
ACGTcount: A:0.49, C:0.08, G:0.17, T:0.26
Consensus pattern (21 bp):
ATGAAATAATCAGAACTCGAG
Found at i:33892591 original size:46 final size:46
Alignment explanation
Indices: 33892536--33892627 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
33892526 AGTAAAGTTC
33892536 TGATATGAAATAATCAGAACTCGAGATGAATTATTATGAAAATATA
1 TGATATGAAATAATCAGAACTCGAGATGAATTATTATGAAAATATA
33892582 TGATATGAAATAATCAGAACTCGAGATGAATTATTATGAAAATATA
1 TGATATGAAATAATCAGAACTCGAGATGAATTATTATGAAAATATA
33892628 CTTGTAATAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.48, C:0.07, G:0.15, T:0.30
Consensus pattern (46 bp):
TGATATGAAATAATCAGAACTCGAGATGAATTATTATGAAAATATA
Found at i:33894750 original size:16 final size:17
Alignment explanation
Indices: 33894728--33894767 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
33894718 TGGATAGTAA
*
33894728 AAGAAAAAAACAAGAAG
1 AAGAAAAAAACAAAAAG
*
33894745 -AGAAAAAAAGAAAAAG
1 AAGAAAAAAACAAAAAG
33894761 AAGAAAA
1 AAGAAAA
33894768 GGATGAGAAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (17 bp):
AAGAAAAAAACAAAAAG
Found at i:33897664 original size:13 final size:13
Alignment explanation
Indices: 33897646--33897670 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33897636 AAATATCTCA
33897646 TATCATAATATCG
1 TATCATAATATCG
33897659 TATCATAATATC
1 TATCATAATATC
33897671 AATCTACAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.04, T:0.40
Consensus pattern (13 bp):
TATCATAATATCG
Found at i:33899080 original size:29 final size:30
Alignment explanation
Indices: 33899018--33899087 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
33899008 GAAGGAGAAG
33899018 AAGTATAAACATATTGAGCCACTTACGCAAAA
1 AAGTA-AAA-ATATTGAGCCACTTACGCAAAA
* * *
33899050 AAGTAAAAATATTGGGCCATTTAC-TAAAA
1 AAGTAAAAATATTGAGCCACTTACGCAAAA
*
33899079 AAGAAAAAA
1 AAGTAAAAA
33899088 GGAAGGATGA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
29 12 0.35
30 14 0.41
31 3 0.09
32 5 0.15
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (30 bp):
AAGTAAAAATATTGAGCCACTTACGCAAAA
Found at i:33909361 original size:23 final size:22
Alignment explanation
Indices: 33909334--33909382 Score: 80
Period size: 23 Copynumber: 2.2 Consensus size: 22
33909324 TAATGAGTAC
33909334 AATAAAAAATGATGAAATAAAA
1 AATAAAAAATGATGAAATAAAA
*
33909356 TAATAAAAAATGATTAAATAAAA
1 -AATAAAAAATGATGAAATAAAA
33909379 AATA
1 AATA
33909383 TTCAATTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 4 0.16
23 21 0.84
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.22
Consensus pattern (22 bp):
AATAAAAAATGATGAAATAAAA
Found at i:33910126 original size:26 final size:24
Alignment explanation
Indices: 33910092--33910140 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
33910082 TAAATAAAAA
* *
33910092 ATTTTAAAATATAATAAATCAAATAC
1 ATTTAAAAACATAA-AAA-CAAATAC
33910118 ATTTAAAAACATAAAAACAAATA
1 ATTTAAAAACATAAAAACAAATA
33910141 TTAAAACAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 6 0.29
25 3 0.14
26 12 0.57
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAC
Found at i:33912085 original size:94 final size:94
Alignment explanation
Indices: 33911971--33912200 Score: 259
Period size: 94 Copynumber: 2.4 Consensus size: 94
33911961 ATTCCAAACA
* * *
33911971 ACTACAACTTCAGGGGTATAGGATTTGTAGCTTCATCTTG-TTCCATTGAAACTTCAAGG-AGAT
1 ACTACATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTT-CACTGAAACTT-AAGGTAGAT
* * *
33912034 AAGAGTT-ACTATGGTAGCTTCGATCTAATCC
64 AAGAGTTGA-TATGATAACTTCGATCCAATCC
* * * * *
33912065 ACTACATCTTCAGGGATATAGGATTTGTGGCTTAATCTTGCTTCACTGCATCTTTAGGTAGATAA
1 ACTACATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTTCACTGAAACTTAAGGTAGATAA
* * *
33912130 GATTTGATATTATAACTTTGATCCAATCC
66 GAGTTGATATGATAACTTCGATCCAATCC
* * *
33912159 ACTGCATCTTCAGGGATATAGGATTTATAGCTTCATATTGCT
1 ACTACATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCT
33912201 CTACTCAATT
Statistics
Matches: 114, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
93 3 0.03
94 108 0.95
95 3 0.03
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (94 bp):
ACTACATCTTCAGGGATATAGGATTTGTAGCTTCATCTTGCTTCACTGAAACTTAAGGTAGATAA
GAGTTGATATGATAACTTCGATCCAATCC
Found at i:33912270 original size:137 final size:139
Alignment explanation
Indices: 33912073--33912366 Score: 353
Period size: 137 Copynumber: 2.1 Consensus size: 139
33912063 CCACTACATC
* * * * * * * * *
33912073 TTCAGGGATATAGGATTTGTGGCTTAATCTTGCTTCACTGCATCTTTAGGTAGATAAGATTTGAT
1 TTCAGGGAGATAAGATTTGTAGCTTAATCTTGCTCCACTGCAACCTCAGGTAGATAAGATTCGAG
* * * *
33912138 ATTATAACTTTGATCCAATCCACTGCATCTTCAGGGATATAGGATTTATAGCTTCATATTGCTCT
66 ATTATAACTTTGATCCAATCAACTACATCTTCAGAGATATAGGATTTATAGCTTCATATTGCTCC
33912203 ACT-CAA-T
131 ACTGCAACT
** *
33912210 TTCAGGGAGATAAGATTTGTAGCTTCGTCTTGCTCCACTGCAACCTCAGAG-AGATAAGATTCGC
1 TTCAGGGAGATAAGATTTGTAGCTTAATCTTGCTCCACTGCAACCTCAG-GTAGATAAGATTCGA
* * * * * *
33912274 GATTGTAACTTTGATCCGATCAACTACATCTTCAGAGATATAGGATTTGTAGGTTTATCTTGCTC
65 GATTATAACTTTGATCCAATCAACTACATCTTCAGAGATATAGGATTTATAGCTTCATATTGCTC
33912339 CACTGCAACT
130 CACTGCAACT
33912349 TT-AGGGAGATAAGATTTG
1 TTCAGGGAGATAAGATTTG
33912367 ATATTATAAC
Statistics
Matches: 132, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
137 109 0.83
138 20 0.15
139 3 0.02
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (139 bp):
TTCAGGGAGATAAGATTTGTAGCTTAATCTTGCTCCACTGCAACCTCAGGTAGATAAGATTCGAG
ATTATAACTTTGATCCAATCAACTACATCTTCAGAGATATAGGATTTATAGCTTCATATTGCTCC
ACTGCAACT
Found at i:33912302 original size:231 final size:232
Alignment explanation
Indices: 33911867--33912546 Score: 746
Period size: 231 Copynumber: 2.9 Consensus size: 232
33911857 TTATAGCTTC
* * * * * * * * *
33911867 ATCTTGCTCCATTGCAACTTCAAGGAGATAAGATTTGTTGTTGT-AGTTTGAATCCATTCCACTA
1 ATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGATATTATAACTTTG-ATCCAATCCACTG
* * * * * ** * * * * *
33911931 CAACTTCAGGGATATAAGATTTTTAGTTTCAT-TCCAAACAACTACAACTTCAGGG-GTATAGGA
65 CATCTTCAGGGATATAGGATTTATAGCTTCATAT-TACTCCACTGCAAATTTAGGGAG-ATAAGA
* * * * * * * * *
33911994 TTTGTAGCTTCATCTTGTTCCATTGAAACTTCA-AGGAGATAAGAGTT-ACTATGGTAGCTTCGA
128 TTTGTAGCTTCATCTTGCTCCACTGCAACCTCAGA-GAGATAAGA-TTCGCGATTGTAACTTTGA
** *
33912057 TCTAATCCACTACATCTTCAGGGATATAGGATTTGT-GGCTTA
191 TCCGATCAACTACATCTTCAGGGATATAGGATTTGTAGG-TTA
* * *
33912099 ATCTTGCTTCACTGCATCTTTAGGTAGATAAGATTTGATATTATAACTTTGATCCAATCCACTGC
1 ATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGATATTATAACTTTGATCCAATCCACTGC
* *
33912164 ATCTTCAGGGATATAGGATTTATAGCTTCATATTGCTCTACT-C-AATTTCAGGGAGATAAGATT
66 ATCTTCAGGGATATAGGATTTATAGCTTCATATTACTCCACTGCAAATTT-AGGGAGATAAGATT
*
33912227 TGTAGCTTCGTCTTGCTCCACTGCAACCTCAGAGAGATAAGATTCGCGATTGTAACTTTGATCCG
130 TGTAGCTTCATCTTGCTCCACTGCAACCTCAGAGAGATAAGATTCGCGATTGTAACTTTGATCCG
* *
33912292 ATCAACTACATCTTCAGAGATATAGGATTTGTAGGTTT
195 ATCAACTACATCTTCAGGGATATAGGATTTGTAGGTTA
**
33912330 ATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGATATTATAACTTTGATCTGATCCACTGC
1 ATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGATATTATAACTTTGATCCAATCCACTGC
*
33912395 ATCTTCAGGGATATAGGATTTATAGCTTCATCTTACTCCACTGCAAATTTAGGGAGATAAGATTT
66 ATCTTCAGGGATATAGGATTTATAGCTTCATATTACTCCACTGCAAATTTAGGGAGATAAGATTT
* * * * * ** *
33912460 GTAGCTTCATCTTGTTCCATTGCAACTTTAGAGAGATAATATTTTCTATTGTAACTTTGATCCGA
131 GTAGCTTCATCTTGCTCCACTGCAACCTCAGAGAGATAAGATTCGCGATTGTAACTTTGATCCGA
* * *
33912525 TCCACTGCATCTTCAAGGATAT
196 TCAACTACATCTTCAGGGATAT
33912547 GGGAGTCACT
Statistics
Matches: 379, Mismatches: 60, Indels: 18
0.83 0.13 0.04
Matches are distributed among these distances:
230 5 0.01
231 191 0.50
232 172 0.45
233 11 0.03
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (232 bp):
ATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGATATTATAACTTTGATCCAATCCACTGC
ATCTTCAGGGATATAGGATTTATAGCTTCATATTACTCCACTGCAAATTTAGGGAGATAAGATTT
GTAGCTTCATCTTGCTCCACTGCAACCTCAGAGAGATAAGATTCGCGATTGTAACTTTGATCCGA
TCAACTACATCTTCAGGGATATAGGATTTGTAGGTTA
Found at i:33912365 original size:44 final size:44
Alignment explanation
Indices: 33911975--33912503 Score: 194
Period size: 44 Copynumber: 11.5 Consensus size: 44
33911965 CAAACAACTA
* * * *
33911975 CAACTTCAGGG-GTATAGGATTTGTAGCTTCATCTTGTTCCATTG
1 CAACTTTAGGGAG-ATAAGATTTGTAGCTTCATCTTGCTCCACTG
* * * ** *
33912019 AAACTTCAAGGAGATAAGAGTTACTATGGTAGCTTCGATC-TAATCCACTA
1 CAACTTTAGGGAGATAAGA--T--T-T-GTAGCTTC-ATCTTGCTCCACTG
* * * * * * *
33912069 CATCTTCAGGGATATAGGATTTGTGGCTTAATCTTGCTTCACTG
1 CAACTTTAGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTG
* *
33912113 CATCTTTAGGTAGATAAGATTTGATA--TT-ATAACTTTGATCCAATCCACTG
1 CAACTTTAGGGAGATAAGATTTG-TAGCTTCAT--C-TTG---C--TCCACTG
* * * * * * *
33912163 CATCTTCAGGGATATAGGATTTATAGCTTCATATTGCTCTACT-
1 CAACTTTAGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTG
*
33912206 CAA-TTTCAGGGAGATAAGATTTGTAGCTTCGTCTTGCTCCACTG
1 CAACTTT-AGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTG
* * * * * * * * *
33912250 CAACCTCAGAGAGATAAGATTCGCGATTGTAACTTTGATC-CGATCAACTA
1 CAACTTTAGGGAGATAAGA-T-----TTGTAGC-TTCATCTTGCTCCACTG
* * * * * * *
33912300 CATCTTCAGAGATATAGGATTTGTAGGTTTATCTTGCTCCACTG
1 CAACTTTAGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTG
* * *
33912344 CAACTTTAGGGAGATAAGATTTGATATTATAACTTTGATC-TGATCCACTG
1 CAACTTTAGGGAGATAAGATTTG------TAGC-TTCATCTTGCTCCACTG
* * * * * *
33912394 CATCTTCAGGGATATAGGATTTATAGCTTCATCTTACTCCACTG
1 CAACTTTAGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTG
* * *
33912438 CAAATTTAGGGAGATAAGATTTGTAGCTTCATCTTGTTCCATTG
1 CAACTTTAGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTG
* *
33912482 CAACTTTAGAGAGATAATATTT
1 CAACTTTAGGGAGATAAGATTT
33912504 TCTATTGTAA
Statistics
Matches: 355, Mismatches: 90, Indels: 80
0.68 0.17 0.15
Matches are distributed among these distances:
42 4 0.01
43 47 0.13
44 159 0.45
45 8 0.02
46 3 0.01
48 3 0.01
49 7 0.02
50 108 0.30
51 14 0.04
52 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (44 bp):
CAACTTTAGGGAGATAAGATTTGTAGCTTCATCTTGCTCCACTG
Found at i:33912459 original size:94 final size:94
Alignment explanation
Indices: 33912210--33912460 Score: 331
Period size: 94 Copynumber: 2.7 Consensus size: 94
33912200 TCTACTCAAT
* * * * * * * *
33912210 TTCAGGGAGATAAGATTTGTAGCTTCGTCTTGCTCCACTGCAACCTCAGAGAGATAAGATTCGCG
1 TTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGAG
*
33912275 ATTGTAACTTTGATCCGATCAACTACATC
66 ATTATAACTTTGATCCGATCAACTACATC
* * * *
33912304 TTCAGAGATATAGGATTTGTAGGTTTATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGAT
1 TTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGAG
* * *
33912369 ATTATAACTTTGATCTGATCCACTGCATC
66 ATTATAACTTTGATCCGATCAACTACATC
* * *
33912398 TTCAGGGATATAGGATTTATAGCTTCATCTTACTCCACTGCAAATTTAGGGAGATAAGATTTG
1 TTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTG
33912461 TAGCTTCATC
Statistics
Matches: 135, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 135 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (94 bp):
TTCAGGGATATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGATAAGATTTGAG
ATTATAACTTTGATCCGATCAACTACATC
Found at i:33915863 original size:6 final size:6
Alignment explanation
Indices: 33915852--33915886 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
33915842 TTGTCTAGAT
* *
33915852 CAATCG CAATCG CAATCG CAATCC CAATCC CAATC
1 CAATCG CAATCG CAATCG CAATCG CAATCG CAATC
33915887 CCTTTCTCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.34, C:0.40, G:0.09, T:0.17
Consensus pattern (6 bp):
CAATCG
Found at i:33919738 original size:45 final size:45
Alignment explanation
Indices: 33919669--33919943 Score: 311
Period size: 45 Copynumber: 6.0 Consensus size: 45
33919659 GACATTTGGG
* *
33919669 TGACATGTGAGCCAGTGAAAGACCATATTGGACATGGCATCGGCAT
1 TGAC-TGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCAT
* * *
33919715 TGACTGTGAACCAGTGTAAGACCATGTTGGACAAGGCATTC-ACAT
1 TGACTGTGAGCCAGTGTAAGACCATGTTGGACATGGCA-TCGGCAT
* ** * *
33919760 TGATTACGAGCTAGTGTAGGACCATGTTGGACATGGCATCGGCAT
1 TGACTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCAT
* * *
33919805 GGATTGTGAACCAGTGTAAGACCATGTTGGACATGGCATCGG-AGT
1 TGACTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCA-T
* * *
33919850 TGATTGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
1 TGACTGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCAT
*
33919897 TGACATGTGAGCCAGTGTAACACCATGTCTGGGACATGGCATCGGCA
1 TGAC-TGTGAGCCAGTGTAAGACCATGT-T-GGACATGGCATCGGCA
33919944 ATTCACCCTC
Statistics
Matches: 195, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
44 3 0.02
45 128 0.66
46 7 0.04
47 18 0.09
48 39 0.20
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (45 bp):
TGACTGTGAGCCAGTGTAAGACCATGTTGGACATGGCATCGGCAT
Found at i:33921943 original size:11 final size:11
Alignment explanation
Indices: 33921927--33921963 Score: 74
Period size: 11 Copynumber: 3.4 Consensus size: 11
33921917 GTCACTTGTA
33921927 TCCTAAACTAT
1 TCCTAAACTAT
33921938 TCCTAAACTAT
1 TCCTAAACTAT
33921949 TCCTAAACTAT
1 TCCTAAACTAT
33921960 TCCT
1 TCCT
33921964 CAGGTTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.32, C:0.30, G:0.00, T:0.38
Consensus pattern (11 bp):
TCCTAAACTAT
Found at i:33923272 original size:21 final size:19
Alignment explanation
Indices: 33923248--33923286 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
33923238 TTTCCTCATG
33923248 GCCTCCTCAAGCTCCCATGTA
1 GCCTCCTCAA-C-CCCATGTA
*
33923269 GCCTCTTCAACCCCATGT
1 GCCTCCTCAACCCCATGT
33923287 CTTTGCCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
20 1 0.06
21 9 0.53
ACGTcount: A:0.18, C:0.44, G:0.13, T:0.26
Consensus pattern (19 bp):
GCCTCCTCAACCCCATGTA
Found at i:33928363 original size:13 final size:13
Alignment explanation
Indices: 33928345--33928369 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33928335 CCGAGCACAC
33928345 GCCCGTGTCCCTA
1 GCCCGTGTCCCTA
33928358 GCCCGTGTCCCT
1 GCCCGTGTCCCT
33928370 CACACGTCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.48, G:0.24, T:0.24
Consensus pattern (13 bp):
GCCCGTGTCCCTA
Found at i:33935107 original size:25 final size:25
Alignment explanation
Indices: 33935074--33935121 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
33935064 GAGTACAATA
*
33935074 AAAAATGATGAAATAAAATAATAAT
1 AAAAATGATGAAATAAAAAAATAAT
*
33935099 AAAAATGATGGAATAAAAAAATA
1 AAAAATGATGAAATAAAAAAATA
33935122 TTCAATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (25 bp):
AAAAATGATGAAATAAAAAAATAAT
Found at i:33935274 original size:9 final size:9
Alignment explanation
Indices: 33935260--33935285 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
33935250 CGATGATCAC
33935260 TTAATAATA
1 TTAATAATA
33935269 TTAATAATA
1 TTAATAATA
33935278 TTAATAAT
1 TTAATAAT
33935286 TAAGAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (9 bp):
TTAATAATA
Found at i:33938557 original size:40 final size:40
Alignment explanation
Indices: 33938508--33938586 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
33938498 TTACAGTACC
* * *
33938508 ACTTGGTGTGTAGGGCTAGATGGGTTGATTTTATCCCCAT
1 ACTTAGTGTGTAGGGCTAGATGAGTCGATTTTATCCCCAT
* *
33938548 ACTTAGTGTGTAGGGCTGGGTGAGTCGATTTTATCCCCA
1 ACTTAGTGTGTAGGGCTAGATGAGTCGATTTTATCCCCA
33938587 CATGGTGTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.18, C:0.16, G:0.30, T:0.35
Consensus pattern (40 bp):
ACTTAGTGTGTAGGGCTAGATGAGTCGATTTTATCCCCAT
Found at i:33945674 original size:40 final size:40
Alignment explanation
Indices: 33945625--33945701 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
33945615 TTACAATACC
*
33945625 ACTTGGTGTGTAGGACTGGATGGGTCGATTTTATCCCTAT
1 ACTTAGTGTGTAGGACTGGATGGGTCGATTTTATCCCTAT
* *
33945665 ACTTAGTGTGTAGGGCTGGGTGGGTCGATTTTATCCC
1 ACTTAGTGTGTAGGACTGGATGGGTCGATTTTATCCC
33945702 CACATGGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.16, C:0.16, G:0.32, T:0.36
Consensus pattern (40 bp):
ACTTAGTGTGTAGGACTGGATGGGTCGATTTTATCCCTAT
Found at i:33947852 original size:16 final size:17
Alignment explanation
Indices: 33947833--33947869 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
33947823 ATATGAAGAA
*
33947833 TATTATTTAACA-TTAT
1 TATTATTTAAAATTTAT
33947849 TATT-TTTAAAATTTAT
1 TATTATTTAAAATTTAT
33947865 TATTA
1 TATTA
33947870 AAATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTATTTAAAATTTAT
Found at i:33947909 original size:34 final size:29
Alignment explanation
Indices: 33947854--33947928 Score: 73
Period size: 34 Copynumber: 2.4 Consensus size: 29
33947844 ATTATTATTT
*
33947854 TTAA-AATTTATTATTAAAATAAAATTAAAATA
1 TTAATAATTTATTATAAAAAT-AAATT---ATA
33947886 TTAAATAATTTATTA-AAATAATAAATTATA
1 TT-AATAATTTATTATAAA-AATAAATTATA
33947916 TTAATAATTTATT
1 TTAATAATTTATT
33947929 CTATGATTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
29 11 0.28
30 5 0.13
32 2 0.05
33 9 0.23
34 12 0.31
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (29 bp):
TTAATAATTTATTATAAAAATAAATTATA
Found at i:33948380 original size:20 final size:21
Alignment explanation
Indices: 33948355--33948402 Score: 71
Period size: 20 Copynumber: 2.3 Consensus size: 21
33948345 AACCCAAAAT
*
33948355 CCTAAACCTTGAA-CTCGAAC
1 CCTAAACCTTGAACCTCAAAC
*
33948375 CCTAAACCTTGAACCTCAAAT
1 CCTAAACCTTGAACCTCAAAC
33948396 CCTAAAC
1 CCTAAAC
33948403 TTTAAATTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.38, C:0.35, G:0.06, T:0.21
Consensus pattern (21 bp):
CCTAAACCTTGAACCTCAAAC
Found at i:33948533 original size:35 final size:34
Alignment explanation
Indices: 33948456--33948543 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 34
33948446 ACCCTAAATA
* * *
33948456 TTAAACCATAAACTTTAAATCTAGAATCTCAAACC
1 TTAAACCCTAAAC-TTAAATCTAAAATATCAAACC
33948491 TTAAACCCTAAACTCTAAATCTAAAATATCAAACC
1 TTAAACCCTAAACT-TAAATCTAAAATATCAAACC
*
33948526 -TAGAACCCAAAACTTAAA
1 TTA-AACCCTAAACTTAAA
33948544 AGCCCAAACC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
34 7 0.15
35 40 0.85
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.25
Consensus pattern (34 bp):
TTAAACCCTAAACTTAAATCTAAAATATCAAACC
Found at i:33948608 original size:21 final size:21
Alignment explanation
Indices: 33948570--33948615 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
33948560 TCGAAACCAT
*
33948570 AACCATAAACCTAAAATCTTA
1 AACCATAAACCTAAAATCTCA
** *
33948591 AACCATAAATTTAGAATCTCA
1 AACCATAAACCTAAAATCTCA
33948612 AACC
1 AACC
33948616 TTGAACCCTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.50, C:0.24, G:0.02, T:0.24
Consensus pattern (21 bp):
AACCATAAACCTAAAATCTCA
Found at i:33948647 original size:20 final size:19
Alignment explanation
Indices: 33948619--33948676 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
33948609 TCAAACCTTG
*
33948619 AACCCTAAACCATAAGCCCA-
1 AACCTTAAACCA-AA-CCCAT
33948639 AACCTTAAACTCAAACCCAT
1 AACCTTAAAC-CAAACCCAT
*
33948659 AACCTTGAACCCAAACCC
1 AACCTT-AAACCAAACCC
33948677 TAAATTCCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
19 4 0.12
20 24 0.73
21 5 0.15
ACGTcount: A:0.43, C:0.40, G:0.03, T:0.14
Consensus pattern (19 bp):
AACCTTAAACCAAACCCAT
Found at i:33948704 original size:34 final size:33
Alignment explanation
Indices: 33948635--33948716 Score: 85
Period size: 34 Copynumber: 2.4 Consensus size: 33
33948625 AAACCATAAG
* * *
33948635 CCCAAACCTTAAACTCAAACCCATAACCTTGAA
1 CCCAAACCCTAAATTCAAACCCATAACCGTGAA
*
33948668 CCCAAACCCTAAATTCCAAACTCATAACTCGT-AA
1 CCCAAACCCTAAATT-CAAACCCATAAC-CGTGAA
*
33948702 CCCGAACCCTTAAAT
1 CCCAAACCC-TAAAT
33948717 CTTTAACCCA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
33 13 0.32
34 21 0.51
35 7 0.17
ACGTcount: A:0.40, C:0.37, G:0.04, T:0.20
Consensus pattern (33 bp):
CCCAAACCCTAAATTCAAACCCATAACCGTGAA
Found at i:33951348 original size:7 final size:7
Alignment explanation
Indices: 33951336--33951376 Score: 64
Period size: 7 Copynumber: 5.6 Consensus size: 7
33951326 ATAATAAAAT
33951336 ATATAAA
1 ATATAAA
33951343 ATATAAA
1 ATATAAA
33951350 ATATAAA
1 ATATAAA
33951357 ATATTAAA
1 ATA-TAAA
33951365 ATATCAAA
1 ATAT-AAA
33951373 ATAT
1 ATAT
33951377 TAGAATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
7 18 0.56
8 14 0.44
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (7 bp):
ATATAAA
Found at i:33951355 original size:23 final size:23
Alignment explanation
Indices: 33951329--33951376 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
33951319 AATGCGAATA
33951329 ATAAAATATATAAAATAT-AAAAT
1 ATAAAATAT-TAAAATATCAAAAT
33951352 ATAAAATATTAAAATATCAAAAT
1 ATAAAATATTAAAATATCAAAAT
33951375 AT
1 AT
33951377 TAGAATAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.33
23 16 0.67
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (23 bp):
ATAAAATATTAAAATATCAAAAT
Found at i:33951366 original size:8 final size:8
Alignment explanation
Indices: 33951325--33951383 Score: 68
Period size: 8 Copynumber: 7.5 Consensus size: 8
33951315 AAAAAATGCG
*
33951325 AATAATAA
1 AATATTAA
33951333 AATATATAA
1 AATAT-TAA
33951342 AATA-TAA
1 AATATTAA
33951349 AATA-TAA
1 AATATTAA
33951356 AATATTAA
1 AATATTAA
*
33951364 AATATCAA
1 AATATTAA
*
33951372 AATATTAG
1 AATATTAA
33951380 AATA
1 AATA
33951384 ATATTAAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
7 14 0.31
8 24 0.53
9 7 0.16
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:33951542 original size:23 final size:23
Alignment explanation
Indices: 33951484--33951698 Score: 154
Period size: 25 Copynumber: 8.8 Consensus size: 23
33951474 ACAATACTAT
* *
33951484 TAATAATACTACATAAATATGTACA
1 TAATAATATTA-A-AAATATATACA
33951509 T-AT-ATATTAAAAATA-AGTACA
1 TAATAATATTAAAAATATA-TACA
* *
33951530 TAATAATATTAAAAGTATGTACA
1 TAATAATATTAAAAATATATACA
*
33951553 TAATATAGTGTTAAAAATATATACA
1 TAATA-A-TATTAAAAATATATACA
*
33951578 TAATATAGTTATTAAAAAATATATATA
1 TAATA-A--TATT-AAAAATATATACA
33951605 TAAGATAATA-TAAAAATATATACA
1 T-A-ATAATATTAAAAATATATACA
* *
33951629 TGA-AATAGTATAATATATATATA-A
1 TAATAATA-T-TAA-AAATATATACA
33951653 CTAATAATATTAAAAATATATACA
1 -TAATAATATTAAAAATATATACA
33951677 TAATATATATATAAAACATATA
1 TAATA-ATAT-TAAAA-ATATA
33951699 CAATATATAT
Statistics
Matches: 155, Mismatches: 15, Indels: 39
0.74 0.07 0.19
Matches are distributed among these distances:
21 14 0.09
22 4 0.03
23 38 0.25
24 28 0.18
25 39 0.25
26 14 0.09
27 13 0.08
28 2 0.01
29 3 0.02
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (23 bp):
TAATAATATTAAAAATATATACA
Found at i:33951708 original size:11 final size:11
Alignment explanation
Indices: 33951595--33951710 Score: 74
Period size: 11 Copynumber: 10.0 Consensus size: 11
33951585 GTTATTAAAA
33951595 AATATATATAT
1 AATATATATAT
*
33951606 AAGATA-ATAT
1 AATATATATAT
*
33951616 AA-AAATATAT
1 AATATATATAT
*
33951626 ACATGAAATAGTAT
1 A-AT-ATATA-TAT
33951640 AATATATATAT
1 AATATATATAT
*
33951651 AACTAATAATATTAAA
1 AA-T-AT-ATA-T-AT
*
33951667 AATATATACAT
1 AATATATATAT
33951678 AATATATATAT
1 AATATATATAT
* * *
33951689 AAAACATATAC
1 AATATATATAT
33951700 AATATATATAT
1 AATATATATAT
33951711 TAGAAATGAT
Statistics
Matches: 82, Mismatches: 13, Indels: 20
0.71 0.11 0.17
Matches are distributed among these distances:
9 2 0.02
10 11 0.13
11 38 0.46
12 5 0.06
13 12 0.15
14 9 0.11
15 2 0.02
16 3 0.04
ACGTcount: A:0.58, C:0.04, G:0.03, T:0.35
Consensus pattern (11 bp):
AATATATATAT
Found at i:33951824 original size:12 final size:12
Alignment explanation
Indices: 33951809--33951863 Score: 60
Period size: 12 Copynumber: 4.6 Consensus size: 12
33951799 ATATTAGTAC
33951809 TAAT-AATATTAA
1 TAATAAATA-TAA
33951821 TAATAAATATAA
1 TAATAAATATAA
33951833 TAATAAATAT-A
1 TAATAAATATAA
**
33951844 TATATGCATATAA
1 TA-ATAAATATAA
33951857 TAATAAA
1 TAATAAA
33951864 AAACGAGACA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
11 3 0.08
12 26 0.72
13 7 0.19
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (12 bp):
TAATAAATATAA
Found at i:33951924 original size:15 final size:14
Alignment explanation
Indices: 33951894--33951947 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
33951884 ATATCTAAAT
*
33951894 ATAATATAATAATA
1 ATAATATAAGAATA
33951908 ATAATATAAAGAATA
1 ATAATAT-AAGAATA
* *
33951923 ATAGTGATAACAATA
1 ATAAT-ATAAGAATA
33951938 ATATATATAA
1 ATA-ATATAA
33951948 CATGAATAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
14 7 0.21
15 23 0.70
16 3 0.09
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (14 bp):
ATAATATAAGAATA
Found at i:33952651 original size:20 final size:21
Alignment explanation
Indices: 33952626--33952665 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
33952616 GTATATGTAT
33952626 ATAAAAA-AAGAGAAA-AAAAC
1 ATAAAAAGAA-AGAAAGAAAAC
33952646 ATAAAAAGAAAGAAAGAAAA
1 ATAAAAAGAAAGAAAGAAAA
33952666 AAAGATTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.80, C:0.03, G:0.12, T:0.05
Consensus pattern (21 bp):
ATAAAAAGAAAGAAAGAAAAC
Found at i:33956255 original size:41 final size:43
Alignment explanation
Indices: 33956210--33956323 Score: 135
Period size: 41 Copynumber: 2.7 Consensus size: 43
33956200 GAGCTAGCAT
33956210 AAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATG-A-A
1 AAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGCAGA
* * * * *
33956251 AAGACCATGTCTGGGACATGGCAT-GGGCTTGATATGTGTCAGTGT
1 AAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATG-CA--GA
33956296 AAGACCATGTCTGGGACATGGCATCGGC
1 AAGACCATGTCTGGGACATGGCATCGGC
33956324 ACCGACAGAT
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
40 10 0.16
41 24 0.39
42 1 0.02
45 24 0.39
46 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.32, T:0.23
Consensus pattern (43 bp):
AAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGCAGA
Found at i:33956315 original size:45 final size:47
Alignment explanation
Indices: 33956251--33956418 Score: 180
Period size: 49 Copynumber: 3.5 Consensus size: 47
33956241 GAGATATGAA
* *
33956251 AAGACCATGTCTGGGACATGGCATGGGCTTG-ATAT-GTGTCAGTGT
1 AAGACCATGTCTGGGACATGGCATGGGCTCGAATATAGAGTCAGTGT
* * * *
33956296 AAGACCATGTCTGGGACATGGCATCGGCACCGACAGATGAGAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATGGGC-TCGA-ATAT-AGAGTCAGTGT
* *
33956346 AAGACCAT-TCTGGGACATGACATCGGCCTCGATATATGAGAGTCAGTGT
1 AAGACCATGTCTGGGACATGGCAT-GGGCTCGA-ATAT-AGAGTCAGTGT
*
33956395 AAGACCATGTCTAGGACATGGCAT
1 AAGACCATGTCTGGGACATGGCAT
33956419 CAACTTTGAT
Statistics
Matches: 101, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
45 27 0.27
46 1 0.01
48 3 0.03
49 39 0.39
50 31 0.31
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
AAGACCATGTCTGGGACATGGCATGGGCTCGAATATAGAGTCAGTGT
Found at i:33956370 original size:49 final size:50
Alignment explanation
Indices: 33956290--33956419 Score: 192
Period size: 49 Copynumber: 2.6 Consensus size: 50
33956280 TGATATGTGT
33956290 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGACAGATGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGACAGATGAGAGC
* * * *
33956340 CAGTGTAAGACCAT-TCTGGGACATGACATCGGCCTCGATATATGAGAGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACAGATGAGAGC
*
33956389 CAGTGTAAGACCATGTCTAGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
33956420 AACTTTGATG
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
48 1 0.01
49 43 0.60
50 28 0.39
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.21
Consensus pattern (50 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGACAGATGAGAGC
Found at i:33959447 original size:46 final size:46
Alignment explanation
Indices: 33959387--33959614 Score: 323
Period size: 46 Copynumber: 5.0 Consensus size: 46
33959377 TTTGACATGA
* * * * * * *
33959387 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGC
** * *
33959433 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGTCACGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
33959479 TGCCATGGTATCTTTCAACCATGGTTTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
*
33959525 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
33959571 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
33959615 AGAGCACACT
Statistics
Matches: 168, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 4 0.02
46 164 0.98
ACGTcount: A:0.22, C:0.24, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
Found at i:33961395 original size:29 final size:29
Alignment explanation
Indices: 33961363--33961424 Score: 124
Period size: 29 Copynumber: 2.1 Consensus size: 29
33961353 TGAATTTCTA
33961363 TCAATTTAACCCTTATTTCATCATTTTAC
1 TCAATTTAACCCTTATTTCATCATTTTAC
33961392 TCAATTTAACCCTTATTTCATCATTTTAC
1 TCAATTTAACCCTTATTTCATCATTTTAC
33961421 TCAA
1 TCAA
33961425 CATGAACAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.47
Consensus pattern (29 bp):
TCAATTTAACCCTTATTTCATCATTTTAC
Found at i:33961683 original size:10 final size:11
Alignment explanation
Indices: 33961661--33961696 Score: 63
Period size: 11 Copynumber: 3.3 Consensus size: 11
33961651 CCTTTATTTC
*
33961661 TTTTTCCTTTT
1 TTTTTCCCTTT
33961672 TTTTTCCCTTT
1 TTTTTCCCTTT
33961683 TTTTTCCCTTT
1 TTTTTCCCTTT
33961694 TTT
1 TTT
33961697 ATATATACAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTTCCCTTT
Found at i:33966881 original size:48 final size:48
Alignment explanation
Indices: 33966792--33967142 Score: 252
Period size: 48 Copynumber: 7.3 Consensus size: 48
33966782 ACAGTGTGCT
* * *
33966792 AGTGTAAGA-CATTTCTGGGACAT-GCATCGGCCAT--ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACATCGA-GATGAGAGCC
* * * *
33966838 ATTGTATGACCATGTCTGGGACATGGCATCGACATTGAGATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGAGAGCC
* * * *
33966886 AGTTTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATATGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAG--ATGAGAGCC
* * * * * *
33966936 AGTGTAAGACCATGTCTGGGACATGGCATGGGC-TTGATAT--GTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGAGAGCC
* * *
33966981 AGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGACAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCG--AGATGAGAGCC
* * * * **
33967031 AGTGTAAGACCAT-TCTGGGACATGACATCGGCCTCGATATATGAGAAAC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCG--AGATGAGAGCC
** * ** * * *
33967080 AGTGTAAGACCATGTCTCAGACATAGCATCGATTTTGATG-CGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGA-GATGAGAGCC
33967128 AGTGTAAGACCATGT
1 AGTGTAAGACCATGT
33967143 TCGAGACATG
Statistics
Matches: 243, Mismatches: 49, Indels: 24
0.77 0.16 0.08
Matches are distributed among these distances:
45 32 0.13
46 8 0.03
47 19 0.08
48 70 0.29
49 45 0.19
50 69 0.28
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATCGAGATGAGAGCC
Found at i:33966957 original size:50 final size:50
Alignment explanation
Indices: 33966789--33967110 Score: 287
Period size: 50 Copynumber: 6.7 Consensus size: 50
33966779 GTGACAGTGT
* *
33966789 GCTAGTGTAAGA-CATTTCTGGGACAT-GCATCGGCCAT--A-TTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCC-TCGAGATATGAGA
* * * * * *
33966835 GCCATTGTATGACCATGTCTGGGACATGGCATCGACATTGAG--ATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
* * *
33966883 GCTAGTTTAAGACCATGTCTGGGACATGGCATCGACCTCGAGATATGAAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
* * *
33966933 GCTAGTGTAAGACCATGTCTGGGACATGGCAT-GGGCT--TGATATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
* * * *
33966979 TC-AGTGTAAGACCATGTCTAGGACATGGCATCGGCAC-CGACAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAGATATGAGA
* * *
33967028 GCCAGTGTAAGACCAT-TCTGGGACATGACATCGGCCTCGATATATGAGAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAG-A
* ** *
33967078 AC-AGTGTAAGACCATGTCTCAGACATAGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
33967111 ATTTTGATGC
Statistics
Matches: 224, Mismatches: 36, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
45 28 0.12
46 12 0.05
47 21 0.09
48 55 0.25
49 44 0.20
50 64 0.29
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATATGAGA
Found at i:33967070 original size:95 final size:97
Alignment explanation
Indices: 33966829--33967111 Score: 306
Period size: 95 Copynumber: 2.9 Consensus size: 97
33966819 CGGCCATATT
* * * * * * *
33966829 ATGAGAGCCATTGTATGACCATGTCTGGGACATGGCATCGACATTGAGATGAGAGCTAGTTTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATATGAGAAC-AGTGTAAG
* * *
33966894 ACCATGTCTGGGACATGGCATCGACCTCGAGAT
65 ACCATGTCTAGGACATGGCATCGACCTCGACAG
* * * * *
33966927 ATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCAT-GGGCTTGATATGTG-TCAGTGTAAGA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATATGAGAACAGTGTAAGA
*
33966990 CCATGTCTAGGACATGGCATCGGCAC-CGACAG
66 CCATGTCTAGGACATGGCATCGAC-CTCGACAG
* *
33967022 ATGAGAGCCAGTGTAAGACCAT-TCTGGGACATGACATCGGCCTCGATATATGAGAAACAGTGTA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTG--ATATGAG-AACAGTGTA
*
33967086 AGACCATGTCTCA-GACATAGCATCGA
63 AGACCATGTCT-AGGACATGGCATCGA
33967112 TTTTGATGCG
Statistics
Matches: 154, Mismatches: 24, Indels: 13
0.81 0.13 0.07
Matches are distributed among these distances:
94 14 0.09
95 59 0.38
96 2 0.01
97 15 0.10
98 34 0.22
99 29 0.19
100 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (97 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTTGATATGAGAACAGTGTAAGA
CCATGTCTAGGACATGGCATCGACCTCGACAG
Found at i:33967103 original size:144 final size:143
Alignment explanation
Indices: 33966840--33967108 Score: 371
Period size: 144 Copynumber: 1.9 Consensus size: 143
33966830 TGAGAGCCAT
* * ** * *
33966840 TGTATGACCATGTCTGGGACATGGCATCGACATTGAGATGAGAGCTAGTTTAAGACCATGTCTGG
1 TGTAAGACCATGTCTAGGACATGGCATCGACACCGAGATGAGAGCCAGTGTAAGACCATGTCTGG
* * ** *
33966905 GACATGGCATCGACCTCGAGATATGAAAGCTAGTGTAAGACCATGTCTGGGACATGGCATGGGCT
66 GACATGACATCGACCTCGAGATATGAAAACTAGTGTAAGACCATGTCTCAGACATAGCATGGGCT
33966970 TGATATGTGTCAG
131 TGATATGTGTCAG
*
33966983 TGTAAGACCATGTCTAGGACATGGCATCGGCACCGACAGATGAGAGCCAGTGTAAGACCAT-TCT
1 TGTAAGACCATGTCTAGGACATGGCATCGACACCG--AGATGAGAGCCAGTGTAAGACCATGTCT
* *
33967047 GGGACATGACATCGGCCTCGATATATGAGAAAC-AGTGTAAGACCATGTCTCAGACATAGCAT
64 GGGACATGACATCGACCTCGAGATATGA-AAACTAGTGTAAGACCATGTCTCAGACATAGCAT
33967109 CGATTTTGAT
Statistics
Matches: 109, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
143 30 0.28
144 54 0.50
145 25 0.23
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (143 bp):
TGTAAGACCATGTCTAGGACATGGCATCGACACCGAGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGACATCGACCTCGAGATATGAAAACTAGTGTAAGACCATGTCTCAGACATAGCATGGGCT
TGATATGTGTCAG
Found at i:33973108 original size:47 final size:47
Alignment explanation
Indices: 33973054--33973699 Score: 1031
Period size: 47 Copynumber: 13.6 Consensus size: 47
33973044 TATTTGAATA
*
33973054 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33973101 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33973150 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33973197 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33973244 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
33973293 AATGTGAAAGTGTGTATATGTGATAAGGCCTAATAGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
33973340 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
33973387 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATATGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33973436 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33973483 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
33973532 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33973579 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
33973626 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33973673 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
33973700 TCCCGAAGGG
Statistics
Matches: 558, Mismatches: 33, Indels: 16
0.92 0.05 0.03
Matches are distributed among these distances:
47 377 0.68
49 181 0.32
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33973162 original size:96 final size:96
Alignment explanation
Indices: 33973054--33973699 Score: 1056
Period size: 96 Copynumber: 6.8 Consensus size: 96
33973044 TATTTGAATA
* * *
33973054 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33973119 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
33973150 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33973213 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
33973244 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
33973307 TATATGTGATAAGGCCTAATAGCTGATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
*
33973340 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
33973405 TATGTGATAAGGCCTAATGGCCGATATGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
33973436 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33973501 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
33973532 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33973595 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
33973626 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33973690 -ATGTGATAAG
66 TATGTGATAAG
33973700 TCCCGAAGGG
Statistics
Matches: 516, Mismatches: 28, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
94 187 0.36
95 1 0.00
96 328 0.64
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33973312 original size:143 final size:143
Alignment explanation
Indices: 33973054--33973699 Score: 1066
Period size: 143 Copynumber: 4.5 Consensus size: 143
33973044 TATTTGAATA
*
33973054 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
33973119 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
33973184 GGCCAATGTGATG
131 GGCCAATGTGATG
33973197 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
33973262 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTGTATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
* **
33973327 AGCTGATGTGATG
131 GGCCAATGTGATG
* * *
33973340 AATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
33973405 TATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
33973470 GGCCAATGTGATG
131 GGCCAATGTGATG
33973483 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
* *
33973546 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGA
*
33973611 ATGGCCGATGTGATG
129 ATGGCCAATGTGATG
* * * * * * *
33973626 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
33973690 -ATGTGATAAG
66 TATGTGATAAG
33973700 TCCCGAAGGG
Statistics
Matches: 470, Mismatches: 29, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
141 50 0.11
142 1 0.00
143 375 0.80
145 44 0.09
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAAT
GGCCAATGTGATG
Found at i:33973956 original size:37 final size:37
Alignment explanation
Indices: 33973818--33973955 Score: 249
Period size: 37 Copynumber: 3.7 Consensus size: 37
33973808 CCGAGCTCTA
33973818 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
33973855 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
33973892 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* *
33973929 AAGACCCGATAACTTCGTGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
33973956 TCGTCTGAGC
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 98 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.25
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:33978699 original size:29 final size:28
Alignment explanation
Indices: 33978633--33978752 Score: 134
Period size: 29 Copynumber: 4.2 Consensus size: 28
33978623 AAGTCTACAT
* * *
33978633 ACATGCATATGGCCCACTAGGCCCAATC
1 ACATTCATATGGCCCATTAGGCCAAATC
*
33978661 TCATTCATATGGCCCATTAGGCCAAAATC
1 ACATTCATATGGCCCATTAGGCC-AAATC
33978690 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGG-CCAAATC
* * * *
33978719 ACGTTCATATTGCCCATCTAGCCCGAATC
1 ACATTCATATGGCCCAT-TAGGCCAAATC
33978748 A-ATTC
1 ACATTC
33978753 CAAGCCATGT
Statistics
Matches: 79, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
28 23 0.29
29 51 0.65
30 5 0.06
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (28 bp):
ACATTCATATGGCCCATTAGGCCAAATC
Found at i:33994686 original size:22 final size:22
Alignment explanation
Indices: 33994661--33994704 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33994651 TATTTATTGT
*
33994661 TATTTAAAAAAATTATATATAA
1 TATTTAAAAAAATTAAATATAA
* *
33994683 TATTTATAAATATTAAATATAA
1 TATTTAAAAAAATTAAATATAA
33994705 AATATTAATC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTTAAAAAAATTAAATATAA
Found at i:34001328 original size:7 final size:7
Alignment explanation
Indices: 34001316--34001408 Score: 64
Period size: 7 Copynumber: 13.0 Consensus size: 7
34001306 GCTAATTAAT
34001316 CTAAACC
1 CTAAACC
34001323 CTAAACC
1 CTAAACC
*
34001330 TCTTAACCC
1 -C-TAAACC
*
34001339 CT-ATCC
1 CTAAACC
*
34001345 CATAAACA
1 C-TAAACC
34001353 CTAAACC
1 CTAAACC
34001360 CTAAACC
1 CTAAACC
34001367 CTAAACGC
1 CTAAAC-C
* * *
34001375 TTACATC
1 CTAAACC
* *
34001382 TTAAACT
1 CTAAACC
34001389 CT-AACC
1 CTAAACC
34001395 CTAAACC
1 CTAAACC
34001402 CTAAACC
1 CTAAACC
34001409 ATAATCTCTA
Statistics
Matches: 67, Mismatches: 13, Indels: 12
0.73 0.14 0.13
Matches are distributed among these distances:
6 9 0.13
7 44 0.66
8 9 0.13
9 5 0.07
ACGTcount: A:0.39, C:0.39, G:0.01, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:34001473 original size:7 final size:7
Alignment explanation
Indices: 34001461--34001507 Score: 58
Period size: 7 Copynumber: 6.7 Consensus size: 7
34001451 AATTAACTCC
34001461 TAAACCT
1 TAAACCT
34001468 TAAACCT
1 TAAACCT
*
34001475 TAAACCA
1 TAAACCT
* *
34001482 TATATCT
1 TAAACCT
*
34001489 TAAACCA
1 TAAACCT
34001496 TAAACCT
1 TAAACCT
34001503 TAAAC
1 TAAAC
34001508 TATAATGATA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.28
Consensus pattern (7 bp):
TAAACCT
Found at i:34001478 original size:14 final size:14
Alignment explanation
Indices: 34001461--34001512 Score: 68
Period size: 14 Copynumber: 3.7 Consensus size: 14
34001451 AATTAACTCC
*
34001461 TAAACCTTAAACCT
1 TAAACCATAAACCT
* *
34001475 TAAACCATATATCT
1 TAAACCATAAACCT
34001489 TAAACCATAAACCT
1 TAAACCATAAACCT
*
34001503 TAAACTATAA
1 TAAACCATAA
34001513 TGATAATTAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.48, C:0.23, G:0.00, T:0.29
Consensus pattern (14 bp):
TAAACCATAAACCT
Found at i:34001775 original size:40 final size:40
Alignment explanation
Indices: 34001679--34001845 Score: 190
Period size: 41 Copynumber: 4.1 Consensus size: 40
34001669 GTTATATAAC
* *
34001679 TTTTAGCGGCGTTTTAGCAAAATCGCCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTAGCAAAAACGCCGCTATTGCTCT-GT
* * *
34001720 TTTTAGCGGCGTTTTATCGAAAGCGCCGCTATTGCTCTGT
1 TTTTAGCGGCGTTTTAGCAAAAACGCCGCTATTGCTCTGT
* * * *
34001760 TTTTAGCAGCATTTTAGCAAAAAAAGCCACTATTGCTCTGT
1 TTTTAGCGGCGTTTTAGC-AAAAACGCCGCTATTGCTCTGT
* ** *
34001801 TTTTAGCGGCGTTTTTGGTAAAACGCCGCTATTACTCTGT
1 TTTTAGCGGCGTTTTAGCAAAAACGCCGCTATTGCTCTGT
34001841 ATTTT
1 -TTTT
34001846 CCTTGCGGCG
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 35 0.33
41 70 0.67
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTAGCAAAAACGCCGCTATTGCTCTGT
Found at i:34001814 original size:81 final size:82
Alignment explanation
Indices: 34001679--34001845 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 82
34001669 GTTATATAAC
* * ** * *
34001679 TTTTAGCGGCGTTTTAGCAAAATCGCCGCTAATGCTCTGGTTTTTAGCGGCGTTTTATCG-AAAG
1 TTTTAGCAGCATTTTAGCAAAAAAGCCACTAATGCTCTGGTTTTTAGCGGCGTTTT-TCGTAAAA
*
34001743 CGCCGCTATTGCTCTGT-
65 CGCCGCTATTACTCTGTA
* *
34001760 TTTTAGCAGCATTTTAGCAAAAAAAGCCACTATTGCTCT-GTTTTTAGCGGCGTTTTTGGTAAAA
1 TTTTAGCAGCATTTTAGC-AAAAAAGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTTCGTAAAA
34001824 CGCCGCTATTACTCTGTA
65 CGCCGCTATTACTCTGTA
34001842 TTTT
1 TTTT
34001846 CCTTGCGGCG
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
80 2 0.03
81 52 0.70
82 20 0.27
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (82 bp):
TTTTAGCAGCATTTTAGCAAAAAAGCCACTAATGCTCTGGTTTTTAGCGGCGTTTTTCGTAAAAC
GCCGCTATTACTCTGTA
Found at i:34011584 original size:47 final size:48
Alignment explanation
Indices: 34011514--34011606 Score: 109
Period size: 47 Copynumber: 2.0 Consensus size: 48
34011504 TTCCCGTTAC
* * *
34011514 ATGGCTCTTTGTGAGCTTCCTGA-TA-GACTCTTCGTGAGCTTCCCAAT
1 ATGGCTCTTTGTAAACTTCCTGATTATGACTCTT-ATGAGCTTCCCAAT
* * *
34011561 ATGGTTCTTTGTAAACTTTCTGATTATGGCTCTTATGAGCTTCCCA
1 ATGGCTCTTTGTAAACTTCCTGATTATGACTCTTATGAGCTTCCCA
34011607 TTATATAGCC
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
47 19 0.50
48 13 0.34
49 6 0.16
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (48 bp):
ATGGCTCTTTGTAAACTTCCTGATTATGACTCTTATGAGCTTCCCAAT
Found at i:34016748 original size:18 final size:17
Alignment explanation
Indices: 34016725--34016785 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
34016715 AATTTGGAAA
34016725 ATTAATACAGCTCGCCAT
1 ATTAATACAG-TCGCCAT
* *
34016743 ATTAATACAAGTCACCAA
1 ATTAATAC-AGTCGCCAT
*
34016761 ATTAACACAGTTCGCCAT
1 ATTAATACAG-TCGCCAT
*
34016779 AATAATA
1 ATTAATA
34016786 TAATTCACCA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
17 2 0.06
18 30 0.88
19 2 0.06
ACGTcount: A:0.43, C:0.23, G:0.08, T:0.26
Consensus pattern (17 bp):
ATTAATACAGTCGCCAT
Found at i:34016764 original size:36 final size:36
Alignment explanation
Indices: 34016723--34016803 Score: 108
Period size: 36 Copynumber: 2.2 Consensus size: 36
34016713 ACAATTTGGA
* *
34016723 AAATTAATACAGCTCGCCATATTAATACAAGTCACC
1 AAATTAACACAGCTCGCCATAATAATACAAGTCACC
* * *
34016759 AAATTAACACAGTTCGCCATAATAATATAATTCACC
1 AAATTAACACAGCTCGCCATAATAATACAAGTCACC
*
34016795 AAGTTAACA
1 AAATTAACA
34016804 TGGTTCACAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.44, C:0.22, G:0.07, T:0.26
Consensus pattern (36 bp):
AAATTAACACAGCTCGCCATAATAATACAAGTCACC
Found at i:34017085 original size:29 final size:28
Alignment explanation
Indices: 34017052--34017129 Score: 113
Period size: 29 Copynumber: 2.8 Consensus size: 28
34017042 CCATATATGA
34017052 ATATATAATATATATAACAAAGCC-CATGC
1 ATATATAATATATATAACAAAGCCACA--C
34017081 ATATATAATATATATAACAAAGCCACAC
1 ATATATAATATATATAACAAAGCCACAC
* *
34017109 CTATATTATATATATAACAAA
1 ATATATAATATATATAACAAA
34017130 ACCCCTATAC
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
28 20 0.43
29 24 0.52
30 2 0.04
ACGTcount: A:0.51, C:0.15, G:0.04, T:0.29
Consensus pattern (28 bp):
ATATATAATATATATAACAAAGCCACAC
Found at i:34029465 original size:58 final size:58
Alignment explanation
Indices: 34029372--34029488 Score: 200
Period size: 58 Copynumber: 2.0 Consensus size: 58
34029362 AGAGATGCAT
* *
34029372 ATGCCACAACCTTTCCTCTTTGCATAAGCATACATCCTAA-CTCATTAAGGGATACGTC
1 ATGCCACAACCTTTCCTCTTTGCATAAGCACACATCCTAATC-CACTAAGGGATACGTC
34029430 ATGCCACAACCTTTCCTCTTTGCATAAGCACACATCCTAATCCACTAAGGGATACGTC
1 ATGCCACAACCTTTCCTCTTTGCATAAGCACACATCCTAATCCACTAAGGGATACGTC
34029488 A
1 A
34029489 ATGTACACAG
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
58 55 0.98
59 1 0.02
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.27
Consensus pattern (58 bp):
ATGCCACAACCTTTCCTCTTTGCATAAGCACACATCCTAATCCACTAAGGGATACGTC
Found at i:34031200 original size:15 final size:15
Alignment explanation
Indices: 34031182--34031217 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
34031172 ATACAAATTA
34031182 TTTTTATAATATAAT
1 TTTTTATAATATAAT
34031197 TTTTTATAATATAAT
1 TTTTTATAATATAAT
34031212 TTTTTA
1 TTTTTA
34031218 CAATTTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTTTATAATATAAT
Found at i:34031216 original size:17 final size:17
Alignment explanation
Indices: 34031177--34031216 Score: 57
Period size: 15 Copynumber: 2.5 Consensus size: 17
34031167 AAAATATACA
*
34031177 AATTATTTTTATAATAT
1 AATTTTTTTTATAATAT
34031194 AA--TTTTTTATAATAT
1 AATTTTTTTTATAATAT
34031209 AATTTTTT
1 AATTTTTT
34031217 ACAATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
15 14 0.70
17 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
AATTTTTTTTATAATAT
Found at i:34040232 original size:20 final size:20
Alignment explanation
Indices: 34040199--34040237 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
34040189 AATGGCTTCT
*
34040199 TAAATTTTTTTTA-TAAAAG
1 TAAATTTTTATTATTAAAAG
34040218 TAAATATTTTATTATTAAAA
1 TAAAT-TTTTATTATTAAAA
34040238 TATTCCAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 7 0.41
21 5 0.29
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (20 bp):
TAAATTTTTATTATTAAAAG
Found at i:34043374 original size:33 final size:33
Alignment explanation
Indices: 34043241--34043383 Score: 121
Period size: 33 Copynumber: 4.3 Consensus size: 33
34043231 AATTGACAGA
* * *
34043241 TAAGACCATGGCTGGGCCATGGCAATATATGTG
1 TAAGACCATAGCTAGGCCATGGCAATACATGTG
* * *
34043274 TAAGACCATAGCTAGGCTATGG-TAT-CCTGATG
1 TAAGACCATAGCTAGGCCATGGCAATACATG-TG
* ** * **
34043306 ATAAGACCATATCTAGGATATGACACCACGA-GTG
1 -TAAGACCATAGCTAGGCCATGGCAATAC-ATGTG
*
34043340 TAAGACCATGGCTAGGCCATGGCAATACATGTG
1 TAAGACCATAGCTAGGCCATGGCAATACATGTG
34043373 TAAGACCATAG
1 TAAGACCATAG
34043384 TTAGATTATG
Statistics
Matches: 83, Mismatches: 21, Indels: 12
0.72 0.18 0.10
Matches are distributed among these distances:
31 2 0.02
32 5 0.06
33 72 0.87
34 2 0.02
35 2 0.02
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (33 bp):
TAAGACCATAGCTAGGCCATGGCAATACATGTG
Found at i:34043522 original size:45 final size:45
Alignment explanation
Indices: 34043406--34043522 Score: 189
Period size: 45 Copynumber: 2.6 Consensus size: 45
34043396 ATCATACCAG
*
34043406 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCACGATTC
1 AAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCACGATTC
*
34043451 AAACGAGTAAGACCATAGCTGAAAGATGCTATGGCATCACGATTC
1 AAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCACGATTC
* * *
34043496 AAATGTGTAAGACCATGGTTGAAAGAT
1 AAATGAGTAAGACCATAGCTGAAAGAT
34043523 ACCATGACAA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.21
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTGAAAGATGCTATGGCATCACGATTC
Found at i:34048956 original size:18 final size:18
Alignment explanation
Indices: 34048933--34048970 Score: 55
Period size: 15 Copynumber: 2.3 Consensus size: 18
34048923 CGTCTCATCT
34048933 CTAATAATATTATATTTG
1 CTAATAATATTATATTTG
34048951 C---TAATATTATATTTG
1 CTAATAATATTATATTTG
34048966 CTAAT
1 CTAAT
34048971 GAAATTCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 6
0.74 0.00 0.26
Matches are distributed among these distances:
15 15 0.88
18 2 0.12
ACGTcount: A:0.37, C:0.08, G:0.05, T:0.50
Consensus pattern (18 bp):
CTAATAATATTATATTTG
Found at i:34048957 original size:15 final size:15
Alignment explanation
Indices: 34048937--34048970 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
34048927 TCATCTCTAA
34048937 TAATATTATATTTGC
1 TAATATTATATTTGC
34048952 TAATATTATATTTGC
1 TAATATTATATTTGC
34048967 TAAT
1 TAAT
34048971 GAAATTCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (15 bp):
TAATATTATATTTGC
Found at i:34070409 original size:20 final size:21
Alignment explanation
Indices: 34070384--34070423 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
34070374 CCCCTGAAAT
*
34070384 AGGGC-ACATGCCCGTGTGGA
1 AGGGCAACACGCCCGTGTGGA
34070404 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACGCCCGTGTGG
34070424 TCATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCGTGTGGA
Found at i:34070597 original size:28 final size:28
Alignment explanation
Indices: 34070542--34070597 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
34070532 ACAGGGGTTT
* *
34070542 TCACATGGCCTGACACATACCCGTGTCCC
1 TCACACGGCCTGACACA-ACCCATGTCCC
34070571 TCACACGGCCATGACAC-ACCCATGTCC
1 TCACACGGCC-TGACACAACCCATGTCC
34070598 TAGCCCGTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 9 0.38
29 9 0.38
30 6 0.25
ACGTcount: A:0.23, C:0.43, G:0.16, T:0.18
Consensus pattern (28 bp):
TCACACGGCCTGACACAACCCATGTCCC
Found at i:34070940 original size:30 final size:30
Alignment explanation
Indices: 34070906--34070967 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
34070896 CCTGAAACAC
34070906 AATCTAACACAAAAAAACATAACAAAGCCT
1 AATCTAACACAAAAAAACATAACAAAGCCT
* *
34070936 AATCTAACACCAAACAACATAACAAAGCCT
1 AATCTAACACAAAAAAACATAACAAAGCCT
34070966 AA
1 AA
34070968 CTTAGTATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.58, C:0.26, G:0.03, T:0.13
Consensus pattern (30 bp):
AATCTAACACAAAAAAACATAACAAAGCCT
Found at i:34077045 original size:6 final size:6
Alignment explanation
Indices: 34077034--34077067 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
34077024 AATTCGACAG
*
34077034 CTGTAT CTGTAT CTGTAT TTGTAT CTGTAT CTGT
1 CTGTAT CTGTAT CTGTAT CTGTAT CTGTAT CTGT
34077068 TTGACTCAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.15, G:0.18, T:0.53
Consensus pattern (6 bp):
CTGTAT
Found at i:34077499 original size:14 final size:14
Alignment explanation
Indices: 34077482--34077520 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
34077472 TTTCTTCTTC
34077482 TTTTTTGTTTTTAT
1 TTTTTTGTTTTTAT
** *
34077496 TTTTTTCCTTTTCT
1 TTTTTTGTTTTTAT
34077510 TTTTTTGTTTT
1 TTTTTTGTTTT
34077521 ACTTCTTTGA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.03, C:0.08, G:0.05, T:0.85
Consensus pattern (14 bp):
TTTTTTGTTTTTAT
Found at i:34079388 original size:16 final size:16
Alignment explanation
Indices: 34079367--34079398 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
34079357 GGTGTAATTA
34079367 TAACAGGCCTTGAGCC
1 TAACAGGCCTTGAGCC
*
34079383 TAACAGGCTTTGAGCC
1 TAACAGGCCTTGAGCC
34079399 GATGTAACCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (16 bp):
TAACAGGCCTTGAGCC
Found at i:34079708 original size:18 final size:19
Alignment explanation
Indices: 34079671--34079708 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
34079661 CGTTTGATTT
*
34079671 AATTTTGTAGGTCCATTGG
1 AATTTTGTACGTCCATTGG
*
34079690 AATTTTG-ACGTCGATTGG
1 AATTTTGTACGTCCATTGG
34079708 A
1 A
34079709 TCTGCTCAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.24, C:0.11, G:0.26, T:0.39
Consensus pattern (19 bp):
AATTTTGTACGTCCATTGG
Found at i:34080814 original size:20 final size:20
Alignment explanation
Indices: 34080789--34080837 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
34080779 CTTCCCTTAA
* *
34080789 ATTATTTTATTTATAATATT
1 ATTATTTTACTTATAAAATT
34080809 ATTATTTTACTTATAAAATT
1 ATTATTTTACTTATAAAATT
34080829 ATTATTTTA
1 ATTATTTTA
34080838 ATAAATAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTATTTTACTTATAAAATT
Found at i:34080847 original size:20 final size:19
Alignment explanation
Indices: 34080789--34080848 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 19
34080779 CTTCCCTTAA
* *
34080789 ATTATTTTATTTATAATATT
1 ATTATTTTAATAATAA-ATT
* *
34080809 ATTATTTTACTTATAAAATT
1 ATTATTTTAATAAT-AAATT
34080829 ATTATTTTAATAAATAAATT
1 ATTATTTTAAT-AATAAATT
34080849 TCATGTTAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 31 0.89
21 4 0.11
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (19 bp):
ATTATTTTAATAATAAATT
Found at i:34080967 original size:19 final size:18
Alignment explanation
Indices: 34080931--34080984 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
34080921 ATTGAAAAAT
*
34080931 ATTTTTTTGATATATTTTTC
1 ATTTTTTT-AAAT-TTTTTC
*
34080951 ATTTTTTTAAAGTTTTTTG
1 ATTTTTTTAAA-TTTTTTC
34080970 ATTTTTTTAAATTTT
1 ATTTTTTTAAATTTT
34080985 AAGAATTAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 4 0.13
19 18 0.58
20 9 0.29
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.70
Consensus pattern (18 bp):
ATTTTTTTAAATTTTTTC
Found at i:34090761 original size:42 final size:42
Alignment explanation
Indices: 34090602--34090762 Score: 173
Period size: 42 Copynumber: 3.8 Consensus size: 42
34090592 ATACCAATGT
* * * * *
34090602 CATATCCCATATATGGTCTTACATGTAATCTCGTATCGTTGC
1 CATATCCCAGATATGGTCTTACACGTAATCTCATATTGATGC
* *
34090644 CAATAGCCCA-ACTATGGTCTTACACGAAATCTCATATTGATGC
1 C-ATATCCCAGA-TATGGTCTTACACGTAATCTCATATTGATGC
* * * *
34090687 CATATGCTAGATATGGTCTTGCACGTAGTCTCATATTGATGC
1 CATATCCCAGATATGGTCTTACACGTAATCTCATATTGATGC
*
34090729 CATATCCCAGATATGGTATTACATC-TAATCTCAT
1 CATATCCCAGATATGGTCTTACA-CGTAATCTCAT
34090763 TAGCCCTAAT
Statistics
Matches: 98, Mismatches: 17, Indels: 8
0.80 0.14 0.07
Matches are distributed among these distances:
42 62 0.63
43 36 0.37
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGTAATCTCATATTGATGC
Found at i:34096823 original size:24 final size:23
Alignment explanation
Indices: 34096732--34096813 Score: 80
Period size: 22 Copynumber: 3.7 Consensus size: 23
34096722 ATTATTAAAA
*
34096732 ATAATTTAATAATA-AATAATAA
1 ATAATTTAATAATATAATAATAT
* * *
34096754 ATAATTTAATCATAT-TTTA-AT
1 ATAATTTAATAATATAATAATAT
* *
34096775 ATAATTTAATAAAAATAAAAATAT
1 ATAATTTAAT-AATATAATAATAT
34096799 ATAATTTAATAATAT
1 ATAATTTAATAATAT
34096814 TTTTAATATA
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
21 11 0.24
22 18 0.39
23 5 0.11
24 12 0.26
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (23 bp):
ATAATTTAATAATATAATAATAT
Found at i:34096882 original size:17 final size:17
Alignment explanation
Indices: 34096860--34096913 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
34096850 AATATTTAAA
34096860 ATATTTTGTATTAAATT
1 ATATTTTGTATTAAATT
*
34096877 ATATTTTGAAATT-AA--
1 ATATTTTG-TATTAAATT
* *
34096892 ATAGTTTATATTAAATT
1 ATATTTTGTATTAAATT
34096909 ATATT
1 ATATT
34096914 AAAATATTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
14 3 0.11
15 8 0.29
17 14 0.50
18 3 0.11
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
ATATTTTGTATTAAATT
Found at i:34096934 original size:34 final size:33
Alignment explanation
Indices: 34096826--34096934 Score: 114
Period size: 32 Copynumber: 3.2 Consensus size: 33
34096816 TTAATATAAT
* *
34096826 TATTTTCATAGTAAATTATTTTAAAATATTTAAAA
1 TATTTT-ATATTAAATTATATTAAAATATTT-AAA
* **
34096861 TATTTTGTATTAAATTATATTTTGAA-A-TTAAA
1 TATTTTATATTAAATTATA-TTAAAATATTTAAA
*
34096893 TAGTTTATATTAAATTATATTAAAATATTTCAAA
1 TATTTTATATTAAATTATATTAAAATATTT-AAA
34096927 TATTTTAT
1 TATTTTAT
34096935 TTTTATATTT
Statistics
Matches: 60, Mismatches: 10, Indels: 9
0.76 0.13 0.11
Matches are distributed among these distances:
31 4 0.07
32 21 0.35
33 4 0.07
34 21 0.35
35 10 0.17
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (33 bp):
TATTTTATATTAAATTATATTAAAATATTTAAA
Found at i:34103939 original size:21 final size:22
Alignment explanation
Indices: 34103887--34103939 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
34103877 AAATAAAGTC
*
34103887 CATGTA-CAAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
34103908 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
34103930 CATGTATCAT
1 CATGTATCAT
34103940 CATTTACTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:34104997 original size:21 final size:20
Alignment explanation
Indices: 34104964--34105002 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
34104954 TTCGAAGCAC
34104964 ATTTATTCACAAAATTTCAGA
1 ATTTATTCAC-AAATTTCAGA
34104985 ATTT-TTCATCAAATTTCA
1 ATTTATTCA-CAAATTTCA
34105003 CCAATTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.44
Consensus pattern (20 bp):
ATTTATTCACAAATTTCAGA
Done.