Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 110 of 290
Found at i:34115407 original size:16 final size:16
Alignment explanation
Indices: 34115372--34115415 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
34115362 GAATCCTTGT
*
34115372 TAAAATAAAATACAATGG
1 TAAAAT-AAA-ACAAAGG
34115390 TAAAATAAAACAAAGG
1 TAAAATAAAACAAAGG
*
34115406 TAAAGTAAAA
1 TAAAATAAAA
34115416 TCCATATAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 15 0.62
17 3 0.12
18 6 0.25
ACGTcount: A:0.66, C:0.05, G:0.11, T:0.18
Consensus pattern (16 bp):
TAAAATAAAACAAAGG
Found at i:34115974 original size:30 final size:28
Alignment explanation
Indices: 34115935--34115996 Score: 97
Period size: 28 Copynumber: 2.1 Consensus size: 28
34115925 ATGGATTTAA
34115935 ATTACTTATTATTTAAGTAAATAGATATTT
1 ATTACTTATTA-TTAAGTAAA-AGATATTT
*
34115965 ATTATTTATTATTAAGTAAAAGATATTT
1 ATTACTTATTATTAAGTAAAAGATATTT
34115993 ATTA
1 ATTA
34115997 ATTAAATAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 12 0.39
29 9 0.29
30 10 0.32
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (28 bp):
ATTACTTATTATTAAGTAAAAGATATTT
Found at i:34117346 original size:39 final size:39
Alignment explanation
Indices: 34117301--34117440 Score: 199
Period size: 39 Copynumber: 3.6 Consensus size: 39
34117291 AAACTATTGC
*
34117301 ACTGAATAATTGATAGTTACTGAATAACTAAATTCCTGT
1 ACTGAATAATTGATAGTTACTGAATAACTAAATTACTGT
* * * *
34117340 ATTGAATAATTGATAGTTATTGAATAACTAAACTACTGC
1 ACTGAATAATTGATAGTTACTGAATAACTAAATTACTGT
* * *
34117379 ACTGAACATTTGATAGTTACTGAATGACTAAATTACTGT
1 ACTGAATAATTGATAGTTACTGAATAACTAAATTACTGT
*
34117418 ACTGAATAATTGATTGTTACTGA
1 ACTGAATAATTGATAGTTACTGA
34117441 TTAAATATGA
Statistics
Matches: 86, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (39 bp):
ACTGAATAATTGATAGTTACTGAATAACTAAATTACTGT
Found at i:34117380 original size:78 final size:78
Alignment explanation
Indices: 34117290--34117436 Score: 231
Period size: 78 Copynumber: 1.9 Consensus size: 78
34117280 TTAATAGGGG
* * * *
34117290 TAAACTATTGCACTGAATAATTGATAGTTACTGAATAACTAAATTCCTGTATTGAATAATTGATA
1 TAAACTACTGCACTGAACAATTGATAGTTACTGAATAACTAAATTACTGTACTGAATAATTGATA
34117355 GTTATTGAATAAC
66 GTTATTGAATAAC
* * *
34117368 TAAACTACTGCACTGAACATTTGATAGTTACTGAATGACTAAATTACTGTACTGAATAATTGATT
1 TAAACTACTGCACTGAACAATTGATAGTTACTGAATAACTAAATTACTGTACTGAATAATTGATA
34117433 GTTA
66 GTTA
34117437 CTGATTAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
78 62 1.00
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.37
Consensus pattern (78 bp):
TAAACTACTGCACTGAACAATTGATAGTTACTGAATAACTAAATTACTGTACTGAATAATTGATA
GTTATTGAATAAC
Found at i:34123669 original size:13 final size:13
Alignment explanation
Indices: 34123651--34123679 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
34123641 GGTTGTTTAT
34123651 TAAACTAATTAAC
1 TAAACTAATTAAC
34123664 TAAACTAATTAAC
1 TAAACTAATTAAC
34123677 TAA
1 TAA
34123680 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:34129791 original size:38 final size:38
Alignment explanation
Indices: 34129748--34129907 Score: 191
Period size: 38 Copynumber: 4.2 Consensus size: 38
34129738 ATGATATTTG
* **
34129748 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCATGCTGGAATTA
* *
34129786 TATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGG-AATTA
* *
34129824 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
*
34129862 TATCCGGGTTAAATCCCGCAGGCTT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGAATTA
*
34129900 TATTCGGG
1 TATCCGGG
34129908 CCTTTGAGCC
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
37 2 0.02
38 105 0.96
39 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
Found at i:34129874 original size:76 final size:76
Alignment explanation
Indices: 34129748--34129907 Score: 223
Period size: 76 Copynumber: 2.1 Consensus size: 76
34129738 ATGATATTTG
* *
34129748 TATCCGGCTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TATCCGGGTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTAG
*
34129813 TGTTGGTAATA
66 TGCTGGTAATA
** * *
34129824 TATCCGGGTTAAATCCCGCAGGCT-TCGTGCTGGTATTATATCCGGGTTAAATCCCGCAGGCTTA
1 TATCCGGGTTAAAGACCGCAGGCTAT-ATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTA
*
34129888 GTGCTGGTATTA
65 GTGCTGGTAATA
*
34129900 TATTCGGG
1 TATCCGGG
34129908 CCTTTGAGCC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
75 1 0.01
76 73 0.99
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (76 bp):
TATCCGGGTTAAAGACCGCAGGCTATATGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTAG
TGCTGGTAATA
Found at i:34129951 original size:45 final size:45
Alignment explanation
Indices: 34129900--34130025 Score: 191
Period size: 45 Copynumber: 2.8 Consensus size: 45
34129890 GCTGGTATTA
*
34129900 TATTCGGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGACAC
* *
34129945 TATTCGGGCCTTTGGGCCTAGTAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGACAC
* *
34129990 TATTCGGG-CTTTCGAGCCTAGCAGGATATAATGCCG
1 TATTCGGGCCTTT-GAGCCTAGTAGGCTATAATGCCG
34130026 ATGAAATGAT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
44 4 0.05
45 70 0.95
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGAGACAC
Found at i:34130042 original size:45 final size:44
Alignment explanation
Indices: 34129903--34130056 Score: 112
Period size: 45 Copynumber: 3.4 Consensus size: 44
34129893 GGTATTATAT
* * * * * * * *
34129903 TCGGGCCTTTGAGCCTAGTAGGCTATTATGCCGGTGAGACACTAT
1 TCGGGCC-TCGAGCCTAGCAGGATATAATGCCGATGAAATACTAA
* * * * * * *
34129948 TCGGGCCTTTGGGCCTAGTAGGCTATAATGCCGGTGAGATACTAT
1 TCGGGCC-TCGAGCCTAGCAGGATATAATGCCGATGAAATACTAA
*
34129993 TCGGGCTTTCGAGCCTAGCAGGATATAATGCCGATGAAATGA-TAA
1 TCGGGC-CTCGAGCCTAGCAGGATATAATGCCGATGAAAT-ACTAA
*
34130038 TCGGGCCTCGATCCTAGCA
1 TCGGGCCTCGAGCCTAGCA
34130057 AACGAAATGC
Statistics
Matches: 94, Mismatches: 13, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
44 11 0.12
45 82 0.87
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (44 bp):
TCGGGCCTCGAGCCTAGCAGGATATAATGCCGATGAAATACTAA
Found at i:34135906 original size:40 final size:39
Alignment explanation
Indices: 34135823--34136006 Score: 210
Period size: 40 Copynumber: 4.6 Consensus size: 39
34135813 TTGAATGATG
* * * * *
34135823 TCCGGGCTAAGTCCCAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
34135862 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
34135902 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
34135941 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
34135982 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
34136007 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 45 0.36
40 71 0.57
41 9 0.07
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34135958 original size:79 final size:81
Alignment explanation
Indices: 34135823--34136006 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
34135813 TTGAATGATG
*
34135823 TCCGGGCTAAGTCCC-AAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
34135886 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
34135901 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
34135963 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
34135981 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34136007 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 4 0.04
79 65 0.71
80 22 0.24
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:34136028 original size:79 final size:79
Alignment explanation
Indices: 34135875--34136039 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
34135865 GGACTAAGAT
* **
34135875 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
34135940 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
34135954 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
34136017 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34136033 CCGAAGG
1 CCGAAGG
34136040 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34139711 original size:13 final size:13
Alignment explanation
Indices: 34139693--34139721 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
34139683 GGTTTTTTAT
34139693 TAAACTAATTAAC
1 TAAACTAATTAAC
34139706 TAAACTAATTAAC
1 TAAACTAATTAAC
34139719 TAA
1 TAA
34139722 TTAAACTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:34141023 original size:21 final size:21
Alignment explanation
Indices: 34140997--34141052 Score: 103
Period size: 21 Copynumber: 2.6 Consensus size: 21
34140987 AGATATTTAT
34140997 TATTTATTATTAAGTAAAAGA
1 TATTTATTATTAAGTAAAAGA
34141018 TATTTATTATTAAGTAAAAGA
1 TATTTATTATTAAGTAAAAGA
34141039 TATTTATTAATTAA
1 TATTTATT-ATTAA
34141053 ATAATTATAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
21 29 0.85
22 5 0.15
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (21 bp):
TATTTATTATTAAGTAAAAGA
Found at i:34141023 original size:28 final size:30
Alignment explanation
Indices: 34140965--34141028 Score: 105
Period size: 28 Copynumber: 2.2 Consensus size: 30
34140955 ATAGATTTAA
*
34140965 ATTACTTATTATTTAAGTAAATAGATATTT
1 ATTATTTATTATTTAAGTAAATAGATATTT
34140995 ATTATTTATTA-TTAAGTAAA-AGATATTT
1 ATTATTTATTATTTAAGTAAATAGATATTT
34141023 ATTATT
1 ATTATT
34141029 AAGTAAAAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
28 14 0.42
29 9 0.27
30 10 0.30
ACGTcount: A:0.41, C:0.02, G:0.06, T:0.52
Consensus pattern (30 bp):
ATTATTTATTATTTAAGTAAATAGATATTT
Found at i:34142351 original size:15 final size:15
Alignment explanation
Indices: 34142329--34142367 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
34142319 AATATTATTA
34142329 AATT-ATTTTTAATT
1 AATTAATTTTTAATT
*
34142343 AATTAATTTCTAATT
1 AATTAATTTTTAATT
*
34142358 AAATAATTTT
1 AATTAATTTT
34142368 CTGAACTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (15 bp):
AATTAATTTTTAATT
Found at i:34160948 original size:23 final size:24
Alignment explanation
Indices: 34160901--34160948 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
34160891 AGCAAAATCC
* *
34160901 TATCCATCTAGCCTCTACACACCA
1 TATCCATCCAACCTCTACACACCA
*
34160925 TATCCATCCAACC-CTACACTCCA
1 TATCCATCCAACCTCTACACACCA
34160948 T
1 T
34160949 GTAGGGATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.29, C:0.44, G:0.02, T:0.25
Consensus pattern (24 bp):
TATCCATCCAACCTCTACACACCA
Found at i:34169744 original size:39 final size:39
Alignment explanation
Indices: 34169663--34169922 Score: 400
Period size: 39 Copynumber: 6.7 Consensus size: 39
34169653 GACTTTATAA
*
34169663 TGGTGTTATATCCGGGCTAAGT-CCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
34169701 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
34169740 TGGTGTTATATCC-GGCTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
34169778 TGGTGTTATATCCGGGCTAAGTCCCGAACGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
34169817 TGGTGTTATATCTGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
34169856 TGGTGTTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
*
34169895 TGGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
34169923 CATGCTTTGT
Statistics
Matches: 208, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
38 60 0.29
39 126 0.61
40 22 0.11
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.31
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:34169790 original size:77 final size:76
Alignment explanation
Indices: 34169663--34169909 Score: 379
Period size: 77 Copynumber: 3.2 Consensus size: 76
34169653 GACTTTATAA
* *
34169663 TGGTGTTATATCCGGGCTAAGTCCGAAGGCATTCGTGTTGGTGTTATATCCGGGCTAAGTCCTGA
1 TGGTGTTATATCC-GGCTAAGTCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGA
34169728 AGGCATTCGTGC
65 AGGCATTCGTGC
34169740 TGGTGTTATATCCGGCTAAGTCCTGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGA
1 TGGTGTTATATCCGGCTAAGTCC-GAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGA
*
34169805 ACGCATTCGTGC
65 AGGCATTCGTGC
*
34169817 TGGTGTTATATCTGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCC
1 TGGTGTTATATC-CGGCTAAGT-CCGAAGGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCCC
* *
34169882 GCAGGC-TTTGTGC
63 GAAGGCATTCGTGC
*
34169895 TGGTATTATATCCGG
1 TGGTGTTATATCCGG
34169910 GCTTAAAGTC
Statistics
Matches: 157, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
76 10 0.06
77 77 0.49
78 57 0.36
79 13 0.08
ACGTcount: A:0.18, C:0.21, G:0.30, T:0.31
Consensus pattern (76 bp):
TGGTGTTATATCCGGCTAAGTCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCGAA
GGCATTCGTGC
Found at i:34169866 original size:116 final size:117
Alignment explanation
Indices: 34169663--34169922 Score: 400
Period size: 116 Copynumber: 2.2 Consensus size: 117
34169653 GACTTTATAA
* * *
34169663 TGGTGTTATATCCGGGCTAAGT-CCGAAGGCATTCGTGTTGGTGTTATATCCGGGCTAAGTCCTG
1 TGGTGTTATATCCGGGCTAAGTCCCGAACGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCG
*
34169727 AAGGCATTCGTGCTGGTGTTATATCC-GGCT-AAGTCCTGAAGGCATTCGTGC
66 AAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGC-TTCGTGC
*
34169778 TGGTGTTATATCCGGGCTAAGTCCCGAACGCATTCGTGCTGGTGTTATATCTGGGCTAAGTCCCG
1 TGGTGTTATATCCGGGCTAAGTCCCGAACGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCG
* *
34169843 AAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
66 AAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTCGTGC
*
34169895 TGGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
34169923 CATGCTTTGT
Statistics
Matches: 132, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
115 22 0.17
116 64 0.48
117 26 0.20
118 12 0.09
119 8 0.06
ACGTcount: A:0.18, C:0.22, G:0.30, T:0.31
Consensus pattern (117 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAACGCATTCGTGCTGGTGTTATATCCGGGCTAAGTCCCG
AAGGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTCGTGC
Found at i:34176098 original size:28 final size:27
Alignment explanation
Indices: 34176054--34176117 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 27
34176044 TCAGTGTACG
* *
34176054 AATATTGAAATGGCACTTAATGTGCGA
1 AATATTGAAATGACACTTAATGTGCAA
* *
34176081 GATATTGAGAATGACACTTAGTGTGCAA
1 AATATTGA-AATGACACTTAATGTGCAA
34176109 AATATTGAA
1 AATATTGAA
34176118 TGATTAAATA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 8 0.26
28 23 0.74
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (27 bp):
AATATTGAAATGACACTTAATGTGCAA
Found at i:34176233 original size:39 final size:39
Alignment explanation
Indices: 34176189--34176401 Score: 306
Period size: 39 Copynumber: 5.5 Consensus size: 39
34176179 GACTTTATAA
* *
34176189 TGGTGTTATATCTGGGCTAAGTCCTGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
34176228 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
*
34176267 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
* *
34176306 TGGTGTTCTATCCGGGCTAAG-CCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
* *
34176344 TGGTGTTATATCCGGGCTAAAGTCCTCCGCA-GC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCT--GAAGGCATTCGTGC
*
34176384 TGGTATTATATCCGGGCT
1 TGGTGTTATATCCGGGCT
34176402 TAAAGTCCCG
Statistics
Matches: 161, Mismatches: 9, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
38 34 0.21
39 98 0.61
40 25 0.16
41 2 0.01
42 2 0.01
ACGTcount: A:0.17, C:0.22, G:0.30, T:0.31
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCTGAAGGCATTCGTGC
Found at i:34178537 original size:78 final size:81
Alignment explanation
Indices: 34178426--34178609 Score: 252
Period size: 78 Copynumber: 2.3 Consensus size: 81
34178416 GCTACTCGTT
* *
34178426 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
34178490 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
**
34178506 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
34178569 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
34178585 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34178610 CATCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
77 3 0.03
78 47 0.51
79 29 0.31
80 14 0.15
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:34178609 original size:40 final size:40
Alignment explanation
Indices: 34178426--34178609 Score: 250
Period size: 40 Copynumber: 4.7 Consensus size: 40
34178416 GCTACTCGTT
* *
34178426 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
34178466 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
34178506 CAAATGCCTTCGGG-CTTAGCCCGGAT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
34178544 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
34178585 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34178610 CATCATTCAA
Statistics
Matches: 129, Mismatches: 10, Indels: 10
0.87 0.07 0.07
Matches are distributed among these distances:
37 2 0.02
38 23 0.18
39 22 0.17
40 71 0.55
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:34184363 original size:79 final size:81
Alignment explanation
Indices: 34184254--34184436 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
34184244 TACTCGTTCA
* *
34184254 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGG
* *
34184317 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
34184334 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
* *
34184397 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
34184413 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
34184437 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:34184436 original size:40 final size:40
Alignment explanation
Indices: 34184252--34184436 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
34184242 GCTACTCGTT
* *
34184252 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACT-AGCA
* * *
34184292 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* *
34184332 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
34184371 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
34184412 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34184437 CATCATTCGA
Statistics
Matches: 124, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:34185630 original size:56 final size:56
Alignment explanation
Indices: 34185563--34185682 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
34185553 TATTAGTTTA
34185563 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
34185619 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
34185675 TTGCCCAT
1 TTGCCCAT
34185683 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:34189637 original size:5 final size:5
Alignment explanation
Indices: 34189627--34189666 Score: 57
Period size: 5 Copynumber: 8.4 Consensus size: 5
34189617 ATTTGTGAAA
*
34189627 AAAAT AAAAT AAAAT AAAAT -AAAG AAAA- AAAAT AAAAT AA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA
34189667 CACACAAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
4 7 0.22
5 25 0.78
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:34189642 original size:10 final size:10
Alignment explanation
Indices: 34189627--34189666 Score: 57
Period size: 9 Copynumber: 4.2 Consensus size: 10
34189617 ATTTGTGAAA
34189627 AAAATAAAAT
1 AAAATAAAAT
34189637 AAAATAAAAT
1 AAAATAAAAT
*
34189647 -AAAGAAAA-
1 AAAATAAAAT
34189655 AAAATAAAAT
1 AAAATAAAAT
34189665 AA
1 AA
34189667 CACACAAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
9 14 0.54
10 12 0.46
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:34190584 original size:16 final size:16
Alignment explanation
Indices: 34190565--34190596 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
34190555 ATAATTATTC
34190565 AATTGTCACCTTATAA
1 AATTGTCACCTTATAA
34190581 AATTGTCACCTTATAA
1 AATTGTCACCTTATAA
34190597 TTTAAATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (16 bp):
AATTGTCACCTTATAA
Found at i:34205069 original size:41 final size:41
Alignment explanation
Indices: 34205024--34205105 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
34205014 TGTAATACAA
34205024 AAAAGACAACTTATATTAGTAGACAAACCTAAACATATCCT
1 AAAAGACAACTTATATTAGTAGACAAACCTAAACATATCCT
**
34205065 AAAAGACAACTTATATTAGTAGATGAACCTAAACATATCCT
1 AAAAGACAACTTATATTAGTAGACAAACCTAAACATATCCT
34205106 TAGTCTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.48, C:0.18, G:0.09, T:0.26
Consensus pattern (41 bp):
AAAAGACAACTTATATTAGTAGACAAACCTAAACATATCCT
Found at i:34209859 original size:12 final size:12
Alignment explanation
Indices: 34209842--34209867 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
34209832 TTGTTATAGC
34209842 ATGATTATATGA
1 ATGATTATATGA
34209854 ATGATTATATGA
1 ATGATTATATGA
34209866 AT
1 AT
34209868 ACATGAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (12 bp):
ATGATTATATGA
Found at i:34211133 original size:49 final size:48
Alignment explanation
Indices: 34211042--34211134 Score: 114
Period size: 49 Copynumber: 1.9 Consensus size: 48
34211032 GATAAGTGTG
* * ** *
34211042 AGTCATTGTAAGACCTTCTGGGACATGGCATCGGCCTCGATGTATGTA
1 AGTCAATGTAAGACCTTCTGAGACATGGCATCAACCTAGATGTATGTA
* *
34211090 AGTCAATGTAAGACTTGTCTGAGACATGGCATCAACTTAGATGTA
1 AGTCAATGTAAGACCT-TCTGAGACATGGCATCAACCTAGATGTA
34211135 AGAGCCAGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
48 14 0.38
49 23 0.62
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (48 bp):
AGTCAATGTAAGACCTTCTGAGACATGGCATCAACCTAGATGTATGTA
Found at i:34223684 original size:93 final size:93
Alignment explanation
Indices: 34223536--34223707 Score: 233
Period size: 93 Copynumber: 1.8 Consensus size: 93
34223526 AGTGAGAGCC
* * *
34223536 AGTGTAAGACCTGTCTGGGACATGGCATTAGACTCAAGATATGCAAGCTAGTGTAAGACCTATCT
1 AGTGTAAGACCTGTCTGGGACATGGCATTAGACACAAGATATGCAAGCCAATGTAAGACCTATCT
34223601 AGGACATGGCATCGGCTTGAGGTTTGTT
66 AGGACATGGCATCGGCTTGAGGTTTGTT
* *
34223629 AGTGTAAGACCTGTCTGGGACATGGCA-TCGACAC-AGATAAGTG-AGAGCCAATGTAAGACCTG
1 AGTGTAAGACCTGTCTGGGACATGGCATTAGACACAAGAT-A-TGCA-AGCCAATGTAAGACCTA
* *
34223691 TTTGGGACATGGCATCG
63 TCTAGGACATGGCATCG
34223708 ACTTAGATAT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
91 4 0.06
92 7 0.10
93 58 0.84
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (93 bp):
AGTGTAAGACCTGTCTGGGACATGGCATTAGACACAAGATATGCAAGCCAATGTAAGACCTATCT
AGGACATGGCATCGGCTTGAGGTTTGTT
Found at i:34223697 original size:49 final size:47
Alignment explanation
Indices: 34223487--34223755 Score: 172
Period size: 49 Copynumber: 5.7 Consensus size: 47
34223477 ATATGTGTGT
* * * * *
34223487 CAATGTAAGACCTGTCTGGGACACGACATCTA-AAAGATAAGTGAGAGC
1 CAATGTAAGACCTGTTTGGGACATGGCATCGACACAGAT-A-TGAGAGC
* * * *
34223535 CAGTGTAAGACCTGTCTGGGACATGGCATTAGACTCAAGATATGCA-AGC
1 CAATGTAAGACCTGTTTGGGACATGGCA-TCGACAC-AGATATG-AGAGC
* * * * * * ** * * **
34223584 TAGTGTAAGACCTATCTAGGACATGGCATCGGCTTGAGGTTTGTTAG-
1 CAATGTAAGACCTGTTTGGGACATGGCATCGAC-ACAGATATGAGAGC
*
34223631 ---TGTAAGACCTGTCTGGGACATGGCATCGACACAGATAAGTGAGAGC
1 CAATGTAAGACCTGTTTGGGACATGGCATCGACACAGAT-A-TGAGAGC
**
34223677 CAATGTAAGACCTGTTTGGGACATGGCATCGACTTAGATATGAGAGC
1 CAATGTAAGACCTGTTTGGGACATGGCATCGACACAGATATGAGAGC
* * *
34223724 CAGTGTAAGACTATGTTTGGAACATGGCATCG
1 CAATGTAAGAC-CTGTTTGGGACATGGCATCG
34223756 GCATCGTACC
Statistics
Matches: 177, Mismatches: 31, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
43 3 0.02
44 27 0.15
45 4 0.02
47 17 0.10
48 54 0.31
49 66 0.37
50 2 0.01
51 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
CAATGTAAGACCTGTTTGGGACATGGCATCGACACAGATATGAGAGC
Found at i:34225494 original size:25 final size:25
Alignment explanation
Indices: 34225460--34225507 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
34225450 TTAATTATGG
34225460 ATTAGTGCTTGATTATGGAAGATGA
1 ATTAGTGCTTGATTATGGAAGATGA
34225485 ATTAGTGCTTGATTATGGAAGAT
1 ATTAGTGCTTGATTATGGAAGAT
34225508 TCCACTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.31, C:0.04, G:0.27, T:0.38
Consensus pattern (25 bp):
ATTAGTGCTTGATTATGGAAGATGA
Found at i:34227928 original size:27 final size:27
Alignment explanation
Indices: 34227875--34228000 Score: 126
Period size: 27 Copynumber: 4.7 Consensus size: 27
34227865 GAATGAATCA
* * * **
34227875 CCTTTGTGACATACTTTGTATATATCG
1 CCTTTGTGGCGTACTCTGTATGGATCG
* * *
34227902 TCTTTGTAGCGTACTCTGCATGGATCG
1 CCTTTGTGGCGTACTCTGTATGGATCG
* *
34227929 CCTTTATGGCGTACTCTGTATGGATCA
1 CCTTTGTGGCGTACTCTGTATGGATCG
* *
34227956 CCTTTGTGGCATACTCTATATGGATCG
1 CCTTTGTGGCGTACTCTGTATGGATCG
**
34227983 ATTTTGTGGCGTACTCTG
1 CCTTTGTGGCGTACTCTG
34228001 ATTAGATAGT
Statistics
Matches: 78, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
27 78 1.00
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.40
Consensus pattern (27 bp):
CCTTTGTGGCGTACTCTGTATGGATCG
Found at i:34228014 original size:27 final size:27
Alignment explanation
Indices: 34227958--34228014 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
34227948 ATGGATCACC
* *
34227958 TTTGTGGCATACTCTATATGGATCGAT
1 TTTGTGGCATACTCTATATAGATAGAT
* *
34227985 TTTGTGGCGTACTCTGAT-TAGATAGTT
1 TTTGTGGCATACTCT-ATATAGATAGAT
34228012 TTT
1 TTT
34228015 TAGTGTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
27 23 0.92
28 2 0.08
ACGTcount: A:0.19, C:0.12, G:0.23, T:0.46
Consensus pattern (27 bp):
TTTGTGGCATACTCTATATAGATAGAT
Found at i:34233458 original size:56 final size:56
Alignment explanation
Indices: 34233372--34233491 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
34233362 ACAAGGGATG
34233372 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
34233428 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
34233484 ATGGGCAA
1 ATGGGCAA
34233492 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:34234891 original size:80 final size:79
Alignment explanation
Indices: 34234621--34234917 Score: 345
Period size: 80 Copynumber: 3.7 Consensus size: 79
34234611 CGAATGATGT
* * * * * **
34234621 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGAGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* *
34234684 TGTGCGAGATACTAATT
64 TGTGCGAGTTACTAA-A
34234701 CCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
34234764 GTGCGAGTTACTAAA
65 GTGCGAGTTACTAAA
* *
34234779 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
34234844 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* * * * *
34234860 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
34234918 TACGTGATTT
Statistics
Matches: 191, Mismatches: 18, Indels: 17
0.85 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 78 0.41
80 107 0.56
81 5 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:34234891 original size:120 final size:118
Alignment explanation
Indices: 34234673--34234917 Score: 334
Period size: 120 Copynumber: 2.1 Consensus size: 118
34234663 GGACTAAGAT
*
34234673 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGATGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGATGCGAGTTACTAA
* ** *
34234738 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTC
66 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCTAAATCC-GGTTAAATC
* *
34234792 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG-TGCGAGTTACT
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACT
* * *
34234856 ATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATT
64 A-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
34234911 CCGAAGG
1 CCGAAGG
34234918 TACGTGATTT
Statistics
Matches: 112, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
119 51 0.46
120 56 0.50
121 5 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTGATGCGAGTTACTAA
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTAAATCCGGTTAAATC
Found at i:34234898 original size:40 final size:40
Alignment explanation
Indices: 34234620--34234884 Score: 351
Period size: 40 Copynumber: 6.7 Consensus size: 40
34234610 TCGAATGATG
* * * * *
34234620 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
34234660 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34234700 TCCGGGCTAAG-CCCGAAGGCA-TTGATGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTG-TGCGAGTTACTAAA
34234739 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
34234779 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
34234819 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
34234860 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
34234885 AACGAGTAGC
Statistics
Matches: 205, Mismatches: 13, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
38 3 0.01
39 31 0.15
40 158 0.77
41 13 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34239122 original size:17 final size:20
Alignment explanation
Indices: 34239085--34239126 Score: 63
Period size: 17 Copynumber: 2.2 Consensus size: 20
34239075 TGATTAGCAA
34239085 GGAAAGAAAGAAGGAAAAAG
1 GGAAAGAAAGAAGGAAAAAG
34239105 GGAAAGAAA-AA-G-AAAAG
1 GGAAAGAAAGAAGGAAAAAG
34239122 GGAAA
1 GGAAA
34239127 ATTAGGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.45
18 1 0.05
19 2 0.09
20 9 0.41
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (20 bp):
GGAAAGAAAGAAGGAAAAAG
Found at i:34239970 original size:6 final size:6
Alignment explanation
Indices: 34239961--34239986 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
34239951 CCTGACTATG
34239961 ACTGTT ACTGTT ACTGTT ACTGTT AC
1 ACTGTT ACTGTT ACTGTT ACTGTT AC
34239987 CCTACAGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.46
Consensus pattern (6 bp):
ACTGTT
Found at i:34246925 original size:22 final size:21
Alignment explanation
Indices: 34246900--34246947 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
34246890 TACAAATTAA
34246900 ATCTCCAAGATTATAAAATCAT
1 ATCTCCAAGATTAT-AAATCAT
* * *
34246922 ATCTTCTAAGATTGTATATCAT
1 ATC-TCCAAGATTATAAATCAT
34246944 ATCT
1 ATCT
34246948 AAGATTGCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
21 1 0.05
22 12 0.55
23 9 0.41
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.40
Consensus pattern (21 bp):
ATCTCCAAGATTATAAATCAT
Found at i:34246985 original size:35 final size:35
Alignment explanation
Indices: 34246926--34247078 Score: 234
Period size: 35 Copynumber: 4.3 Consensus size: 35
34246916 AATCATATCT
34246926 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
*
34246963 TCTAAGATTGTGTCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
34246998 TCTAAGATTGTATCATAACTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
* *
34247033 TCTAAGATTGTATCATATCTAAGATTCCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
*
34247069 TCTAATATTG
1 TCTAAGATTG
34247079 CATATCATTG
Statistics
Matches: 108, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
35 84 0.78
36 14 0.13
37 10 0.09
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:34253746 original size:31 final size:31
Alignment explanation
Indices: 34253708--34253766 Score: 118
Period size: 31 Copynumber: 1.9 Consensus size: 31
34253698 AAGTTTAAGT
34253708 TAGTGGAAAGTAAGAGAGGCCAATGATCCGA
1 TAGTGGAAAGTAAGAGAGGCCAATGATCCGA
34253739 TAGTGGAAAGTAAGAGAGGCCAATGATC
1 TAGTGGAAAGTAAGAGAGGCCAATGATC
34253767 TGACTTAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.12, G:0.32, T:0.17
Consensus pattern (31 bp):
TAGTGGAAAGTAAGAGAGGCCAATGATCCGA
Found at i:34255635 original size:42 final size:42
Alignment explanation
Indices: 34255576--34255664 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
34255566 AGGCGAGTCT
*
34255576 CTGTTCGCTTCAACCGTAGACTCAGAAGTTTTGAATTTACAA
1 CTGTTCGCCTCAACCGTAGACTCAGAAGTTTTGAATTTACAA
*
34255618 CTGTTCGCCTCAACCGTAGACTCATAAGTTTTGAATTTACAA
1 CTGTTCGCCTCAACCGTAGACTCAGAAGTTTTGAATTTACAA
*
34255660 ATGTT
1 CTGTT
34255665 GTCAACGTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (42 bp):
CTGTTCGCCTCAACCGTAGACTCAGAAGTTTTGAATTTACAA
Found at i:34262532 original size:42 final size:42
Alignment explanation
Indices: 34262485--34262569 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
34262475 GTTAGACAAA
34262485 TGCAAATTTAATTACGTCAAGGCCTTTCGATCTTTACGCTTC
1 TGCAAATTTAATTACGTCAAGGCCTTTCGATCTTTACGCTTC
34262527 TGCAAATTTAATTACGTCAAGGCCTTTCGATCTTTACGCTTC
1 TGCAAATTTAATTACGTCAAGGCCTTTCGATCTTTACGCTTC
34262569 T
1 T
34262570 TCTCTTCATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.39
Consensus pattern (42 bp):
TGCAAATTTAATTACGTCAAGGCCTTTCGATCTTTACGCTTC
Found at i:34266652 original size:11 final size:11
Alignment explanation
Indices: 34266633--34266662 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
34266623 CCTTTATGGA
*
34266633 ATAAATATCAC
1 ATAATTATCAC
34266644 ATAATTATCAC
1 ATAATTATCAC
34266655 ATAATTAT
1 ATAATTAT
34266663 TGCAATCCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.50, C:0.13, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAATTATCAC
Found at i:34271153 original size:31 final size:31
Alignment explanation
Indices: 34271118--34271192 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
34271108 ATTTATTTAA
34271118 ATGTATATGATTGAATCAAAATTAAAGTTTT
1 ATGTATATGATTGAATCAAAATTAAAGTTTT
* * * *
34271149 ATGTATACGTTTAAATCACAATTAAAGTTTT
1 ATGTATATGATTGAATCAAAATTAAAGTTTT
* *
34271180 ATGTGTATAATTG
1 ATGTATATGATTG
34271193 CACCAAATCA
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.43
Consensus pattern (31 bp):
ATGTATATGATTGAATCAAAATTAAAGTTTT
Found at i:34271883 original size:20 final size:20
Alignment explanation
Indices: 34271860--34271899 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
34271850 AAATTTAACT
34271860 AATTAAAAAAAATAAAAGTA
1 AATTAAAAAAAATAAAAGTA
***
34271880 AATTCTTAAAAATAAAAGTA
1 AATTAAAAAAAATAAAAGTA
34271900 TAATAACTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.25
Consensus pattern (20 bp):
AATTAAAAAAAATAAAAGTA
Found at i:34277914 original size:6 final size:6
Alignment explanation
Indices: 34277905--34277959 Score: 110
Period size: 6 Copynumber: 9.2 Consensus size: 6
34277895 TTTTTTTTTC
34277905 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG
34277953 AAAATG A
1 AAAATG A
34277960 CCTAGAAATG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:34277970 original size:17 final size:18
Alignment explanation
Indices: 34277948--34277989 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
34277938 ATGAAAATGA
*
34277948 AAATGAAAA-TGACCTAG
1 AAATGAAAACTAACCTAG
34277965 AAATGAAAACTAACCTAG
1 AAATGAAAACTAACCTAG
34277983 AAATGAA
1 AAATGAA
34277990 TCTATGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.57, C:0.12, G:0.14, T:0.17
Consensus pattern (18 bp):
AAATGAAAACTAACCTAG
Found at i:34281533 original size:17 final size:18
Alignment explanation
Indices: 34281496--34281530 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
34281486 TAAAATTTAA
*
34281496 ATAAAATTTTTAATTTTT
1 ATAAAATTTTCAATTTTT
34281514 ATAAAATTTTCAATTTT
1 ATAAAATTTTCAATTTT
34281531 ATATTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
ATAAAATTTTCAATTTTT
Found at i:34282002 original size:21 final size:21
Alignment explanation
Indices: 34281978--34282019 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
34281968 GAACATCACC
34281978 CTGTTCAAAAATGTAAACACA
1 CTGTTCAAAAATGTAAACACA
34281999 CTGTTCAAAAATGTAAACACA
1 CTGTTCAAAAATGTAAACACA
34282020 GAAATGATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.24
Consensus pattern (21 bp):
CTGTTCAAAAATGTAAACACA
Found at i:34285800 original size:16 final size:17
Alignment explanation
Indices: 34285754--34285801 Score: 80
Period size: 17 Copynumber: 2.9 Consensus size: 17
34285744 AAATTAACCA
34285754 AAACCCCTAGCCCAACT
1 AAACCCCTAGCCCAACT
*
34285771 AAACCCCTAACCCAACT
1 AAACCCCTAGCCCAACT
34285788 AAA-CCCTAGCCCAA
1 AAACCCCTAGCCCAA
34285802 AACAAATCAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 10 0.34
17 19 0.66
ACGTcount: A:0.40, C:0.46, G:0.04, T:0.10
Consensus pattern (17 bp):
AAACCCCTAGCCCAACT
Found at i:34286199 original size:16 final size:16
Alignment explanation
Indices: 34286178--34286208 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34286168 CCCGAATTTG
*
34286178 TTTCTTTTTTCTTTTA
1 TTTCTTCTTTCTTTTA
34286194 TTTCTTCTTTCTTTT
1 TTTCTTCTTTCTTTT
34286209 CTATTCAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTCTTCTTTCTTTTA
Found at i:34287062 original size:3 final size:3
Alignment explanation
Indices: 34287054--34287302 Score: 102
Period size: 3 Copynumber: 85.0 Consensus size: 3
34287044 TATTCTATAC
* * * * *
34287054 TAT TAT TAT T-G TAT CTAT TTT TAT TAC TAT T-T TAT CTAT TCT TTT
1 TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT
* * * *
34287099 TA- TAT TAG TAT TAT CAT CAT TAT TAT CAT TAT TA- TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
34287145 TAT TA- TAT TA- TATT TAG TAT TAT CT-T TAA TAT TA- TAT T-T CTAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT -TAT TAT TAT TAT TAT TAT -TAT
* * *
34287188 TAT TA- TATT TAT TAT TAT CTAT TAC T-T TAT TTT TAT TTT TAT T-T
1 TAT TAT TA-T TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
34287232 TAA TAC TAT TA- TAT TA- TAT TCACCT T-T TA- TAT TTT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-A--T TAT TAT TAT TAT TAT TAT TAT
*
34287276 TA- TAT TAT T-T TCAT TAC TAT TACT TAT
1 TAT TAT TAT TAT T-AT TAT TAT TA-T TAT
34287303 CTTTACTTTT
Statistics
Matches: 184, Mismatches: 32, Indels: 60
0.67 0.12 0.22
Matches are distributed among these distances:
2 32 0.17
3 129 0.70
4 21 0.11
6 2 0.01
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:34287178 original size:38 final size:40
Alignment explanation
Indices: 34287136--34287230 Score: 110
Period size: 38 Copynumber: 2.5 Consensus size: 40
34287126 ATTATTATAT
34287136 TATTATTATTATTA-TATTATATTTAGTATTATCT-TTAA
1 TATTATTATTATTATTATTATATTTAGTATTATCTATTAA
* *
34287174 TATTA-TATT-TCTATTATTATATTTATTATTATCTATTAC
1 TATTATTATTAT-TATTATTATATTTAGTATTATCTATTAA
* *
34287213 T-TTATTTTTATTTTTATT
1 TATTATTATTATTATTATT
34287231 TTAATACTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
36 1 0.02
37 6 0.12
38 27 0.56
39 13 0.27
40 1 0.02
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.65
Consensus pattern (40 bp):
TATTATTATTATTATTATTATATTTAGTATTATCTATTAA
Found at i:34287178 original size:55 final size:54
Alignment explanation
Indices: 34287074--34287251 Score: 141
Period size: 55 Copynumber: 3.2 Consensus size: 54
34287064 GTATCTATTT
* * * *
34287074 TTATTACTATT-TTATCTATTCTT-TTTATA-TTAGTATTATCATCATTATTATCA
1 TTATTA-TATTATTAT-TATTATTATTTATATTTAGTATTATCTTTAATATTATCA
34287127 TTATTATATTATTATTATTATTATATTATATTTAGTATTATCTTTAATATTATATTTCTA
1 TTATTATATTATTATTATTATTAT-TTATATTTAGTATTATCTTTAATA-T-TA--TC-A
* * * * *
34287187 TTATTATATTTATTATTATCTATTACTTTATTTTTATTTTTAT-TTTAATACTATTA
1 TTATTATA-TTATTATTAT-TATTA-TTTATATTTAGTATTATCTTTAATATTATCA
34287243 -TATTATATT
1 TTATTATATT
34287252 CACCTTTTAT
Statistics
Matches: 104, Mismatches: 9, Indels: 23
0.76 0.07 0.17
Matches are distributed among these distances:
52 10 0.10
53 11 0.11
54 7 0.07
55 22 0.21
56 2 0.02
57 3 0.03
59 4 0.04
60 9 0.09
61 17 0.16
62 18 0.17
63 1 0.01
ACGTcount: A:0.30, C:0.06, G:0.01, T:0.62
Consensus pattern (54 bp):
TTATTATATTATTATTATTATTATTTATATTTAGTATTATCTTTAATATTATCA
Found at i:34287318 original size:55 final size:53
Alignment explanation
Indices: 34287054--34287318 Score: 147
Period size: 52 Copynumber: 4.9 Consensus size: 53
34287044 TATTCTATAC
* * **
34287054 TATTATTATTGTATCTATTTTTATTACTATT-TTATCTATT-CTTTT-TATATTAG
1 TATTATTATTATAT-TA-TTTTATTACTATTATTATAT-TTACTTTTATATATTTT
* * * * *
34287107 TATTATCATCATTATTATCATTATTA-TATTATTAT-TATTA-TTATAT-TATATT
1 TATTATTATTA-TATTAT-TTTATTACTATTATTATAT-TTACTTTTATATATTTT
* * * * * *
34287159 TAGTATTATCTTTAATATTATATTTCTATTATTATATTTA-TTATTATCTATTACTT
1 TATTATTAT-TATATTATTTTATTACTATTATTATATTTACTT-TTATATATT--TT
* * * *
34287215 TATTTTTATT-T-TTATTTTAATACTATTATATTATATTCACCTTT-TATATTTT
1 TATTATTATTATATTATTTTATTACTA-T-TATTATATTTACTTTTATATATTTT
*
34287267 TATTATTATTATATTATTTTCATTACTATTACTTATCTTTACTTTTATATAT
1 TATTATTATTATATTATTTT-ATTACTATTA-TTATATTTACTTTTATATAT
34287319 ATATACGTAT
Statistics
Matches: 160, Mismatches: 32, Indels: 38
0.70 0.14 0.17
Matches are distributed among these distances:
51 4 0.03
52 52 0.32
53 38 0.24
54 32 0.20
55 24 0.15
56 10 0.06
ACGTcount: A:0.29, C:0.08, G:0.01, T:0.62
Consensus pattern (53 bp):
TATTATTATTATATTATTTTATTACTATTATTATATTTACTTTTATATATTTT
Found at i:34287749 original size:22 final size:21
Alignment explanation
Indices: 34287707--34287749 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
34287697 TTTTATTTTA
* *
34287707 ATATTGTTATATATATTCTTC
1 ATATTGTTATATACATACTTC
*
34287728 ATATATGTTATGTACATACTTC
1 ATAT-TGTTATATACATACTTC
34287750 TTTTTTTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.51
Consensus pattern (21 bp):
ATATTGTTATATACATACTTC
Found at i:34287786 original size:11 final size:11
Alignment explanation
Indices: 34287766--34287794 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
34287756 TAATATCTAT
34287766 TATATA-TATG
1 TATATATTATG
34287776 TATATATTATG
1 TATATATTATG
34287787 TATATATT
1 TATATATT
34287795 TTAACATTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (11 bp):
TATATATTATG
Found at i:34287868 original size:23 final size:24
Alignment explanation
Indices: 34287820--34287872 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
34287810 ATATATTTTT
34287820 ACTATCTTATGTATATACTTCAAAC
1 ACTATCTTATGTATATA-TTCAAAC
*
34287845 ACTATC-TATAGTATAT-TTCTAAC
1 ACTATCTTAT-GTATATATTCAAAC
34287868 ACTAT
1 ACTAT
34287873 TACTATTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 11 0.42
24 3 0.12
25 12 0.46
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.42
Consensus pattern (24 bp):
ACTATCTTATGTATATATTCAAAC
Found at i:34287952 original size:11 final size:11
Alignment explanation
Indices: 34287936--34287970 Score: 70
Period size: 11 Copynumber: 3.2 Consensus size: 11
34287926 ATATGTATAT
34287936 TCATTGTGTTC
1 TCATTGTGTTC
34287947 TCATTGTGTTC
1 TCATTGTGTTC
34287958 TCATTGTGTTC
1 TCATTGTGTTC
34287969 TC
1 TC
34287971 GTATTTGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.09, C:0.20, G:0.17, T:0.54
Consensus pattern (11 bp):
TCATTGTGTTC
Found at i:34299429 original size:16 final size:16
Alignment explanation
Indices: 34299410--34299444 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
34299400 AAAATATGAT
34299410 GAAAAGAAAAGGGGAA
1 GAAAAGAAAAGGGGAA
*
34299426 GAAAAGAAAGGGGGAA
1 GAAAAGAAAAGGGGAA
34299442 GAA
1 GAA
34299445 TAAAAAAGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (16 bp):
GAAAAGAAAAGGGGAA
Found at i:34300640 original size:22 final size:22
Alignment explanation
Indices: 34300613--34300657 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
34300603 ATTCATGAAT
*
34300613 TACATTAATATTCTTTTTATAA
1 TACATTAATATTCTTTGTATAA
34300635 TACATTAATATTCTTTGTATAA
1 TACATTAATATTCTTTGTATAA
34300657 T
1 T
34300658 GTCTTTATGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.09, G:0.02, T:0.53
Consensus pattern (22 bp):
TACATTAATATTCTTTGTATAA
Found at i:34305678 original size:20 final size:20
Alignment explanation
Indices: 34305653--34305692 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
34305643 TAAATTAACT
34305653 GGTCATGGTGAATCTGTTGA
1 GGTCATGGTGAATCTGTTGA
34305673 GGTCATGGTGAATCTGTTGA
1 GGTCATGGTGAATCTGTTGA
34305693 ATGTGGATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.35, T:0.35
Consensus pattern (20 bp):
GGTCATGGTGAATCTGTTGA
Found at i:34309668 original size:152 final size:152
Alignment explanation
Indices: 34309356--34309670 Score: 456
Period size: 152 Copynumber: 2.1 Consensus size: 152
34309346 AAGTTTTCTT
* * * *
34309356 TAAAAATAATCACTACTTTTCTTAAAAACTAAAGTTTTATTTCGAAATAATTGAAAAAAATCAAA
1 TAAAAA-AATCACCACTTTTCTTAAAAACTAAAGCTTTATTTCAAAATAATTGAAAAAAACCAAA
* * *
34309421 ATTTTGTTTTAAAAGTTTAAACTTTTCCTTTAAAATGACTAAAAAATATTATTATTTTTAAAAAT
65 ACTTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGACTAAAAAATATTATTATTTTTAAAAAT
*
34309486 CTAAACTTTCTCTTTTTTTTTTA
130 CTAAACTTCCTCTTTTTTTTTTA
* * *
34309509 TAAAAAAATCACCATTTTTCTTAAAAA-TCAAAGCTTTATTTCAAAATAGTTGAAAAAGACCAAA
1 TAAAAAAATCACCACTTTTCTTAAAAACT-AAAGCTTTATTTCAAAATAATTGAAAAAAACCAAA
34309573 ACTTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGACTAAAAAACATAATT-TTATTTTTAAA
65 ACTTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGACT-AAAAA-AT-ATTATTATTTTTAAA
34309637 AATCTAAACTTCCTCTTTTTTTTTT-
127 AATCTAAACTTCCTCTTTTTTTTTTA
34309662 TGAAAAAAA
1 T-AAAAAAA
34309671 AATGAAAACC
Statistics
Matches: 146, Mismatches: 11, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
151 1 0.01
152 86 0.59
153 12 0.08
154 44 0.30
155 3 0.02
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.42
Consensus pattern (152 bp):
TAAAAAAATCACCACTTTTCTTAAAAACTAAAGCTTTATTTCAAAATAATTGAAAAAAACCAAAA
CTTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGACTAAAAAATATTATTATTTTTAAAAATC
TAAACTTCCTCTTTTTTTTTTA
Found at i:34328361 original size:46 final size:46
Alignment explanation
Indices: 34328311--34328486 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
34328301 TGGTTGAGCA
34328311 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34328357 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
34328402 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34328450 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
34328487 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34328467 original size:93 final size:93
Alignment explanation
Indices: 34328308--34328479 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
34328298 GGATGGTTGA
* *
34328308 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34328373 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
34328401 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
34328466 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
34328480 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:34333373 original size:23 final size:19
Alignment explanation
Indices: 34333347--34333394 Score: 51
Period size: 23 Copynumber: 2.3 Consensus size: 19
34333337 TAAGTATTAT
34333347 AATAAGAAATGACATTATGTAGA
1 AATAAGAAAT-A-ATTA-GTA-A
*
34333370 AATAATAAATAATTAGTAA
1 AATAAGAAATAATTAGTAA
34333389 AATAAG
1 AATAAG
34333395 GTAAAGATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 6 0.26
20 3 0.13
21 4 0.17
22 1 0.04
23 9 0.39
ACGTcount: A:0.58, C:0.02, G:0.12, T:0.27
Consensus pattern (19 bp):
AATAAGAAATAATTAGTAA
Found at i:34335083 original size:39 final size:39
Alignment explanation
Indices: 34335032--34335175 Score: 225
Period size: 39 Copynumber: 3.7 Consensus size: 39
34335022 TGTGTGAGAT
34335032 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
34335071 TTATATCTGGGCTAAGTCCCAAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * **
34335110 TTATATCTGGGCTAAATCCCGAAGATATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
34335149 TTATATCCGGGCTAAGTCCCGAAGGCA
1 TTATATCCGGGCTAAGTCCCGAAGGCA
34335176 ATTATGTTGG
Statistics
Matches: 93, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 93 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:34347739 original size:46 final size:46
Alignment explanation
Indices: 34347686--34347855 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 46
34347676 TGGTTGAGCA
34347686 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
34347732 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
34347777 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
34347825 TCCGAGCTCATTGAGTTGAGTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
34347856 CTAGGGGCGG
Statistics
Matches: 102, Mismatches: 13, Indels: 18
0.77 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 57 0.56
47 28 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34347842 original size:93 final size:93
Alignment explanation
Indices: 34347683--34347853 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
34347673 GGATGGTTGA
* * *
34347683 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
34347748 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
34347776 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
34347841 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
34347854 ACCTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:34350701 original size:43 final size:43
Alignment explanation
Indices: 34350520--34350703 Score: 206
Period size: 43 Copynumber: 4.3 Consensus size: 43
34350510 ACTTAGTTCA
* * * *
34350520 CCCATTGGCCAATACCATACAAAAGCAGACTTTATACAATTTG
1 CCCATTGGCGAATACTATATAATAGCAGACTTTATACAATTTG
* * * *
34350563 CCCGTTGGCCAATACTATATAAGAGCAGACTTTATACAATTTT
1 CCCATTGGCGAATACTATATAATAGCAGACTTTATACAATTTG
* * * * *
34350606 CCCATTGGTGAATACTATATAATAGAAAACTTTATATAATTTT
1 CCCATTGGCGAATACTATATAATAGCAGACTTTATACAATTTG
* * * * *
34350649 CTCATTGGCGAATACTATATAATAGTAGACTTCATGCAATTCG
1 CCCATTGGCGAATACTATATAATAGCAGACTTTATACAATTTG
34350692 CCCATTGGCGAA
1 CCCATTGGCGAA
34350704 ATTCCAAACT
Statistics
Matches: 119, Mismatches: 22, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 119 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (43 bp):
CCCATTGGCGAATACTATATAATAGCAGACTTTATACAATTTG
Found at i:34354769 original size:23 final size:23
Alignment explanation
Indices: 34354692--34354772 Score: 76
Period size: 23 Copynumber: 3.3 Consensus size: 23
34354682 TACTTCAAGA
34354692 TGGAAAACTAAGGTATCCTAAAG
1 TGGAAAACTAAGGTATCCTAAAG
*
34354715 TGGAAAA--AATGAGTAAAGTCCTTCAAG
1 TGGAAAACTAA-G-GT--A-TCC-TAAAG
34354742 ATGGAAAACTAAGGTATCCTAAAG
1 -TGGAAAACTAAGGTATCCTAAAG
34354766 TGGAAAA
1 TGGAAAA
34354773 AACTATCTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 18
0.70 0.03 0.27
Matches are distributed among these distances:
21 2 0.04
22 1 0.02
23 16 0.34
24 4 0.09
25 4 0.09
26 4 0.09
27 4 0.09
28 9 0.19
29 1 0.02
30 2 0.04
ACGTcount: A:0.46, C:0.11, G:0.22, T:0.21
Consensus pattern (23 bp):
TGGAAAACTAAGGTATCCTAAAG
Found at i:34356964 original size:49 final size:48
Alignment explanation
Indices: 34356911--34357188 Score: 198
Period size: 49 Copynumber: 5.6 Consensus size: 48
34356901 GGAGAAGGGT
* *
34356911 CATATTATTACTTTTTGTAAGCTTCCCTCTATGCGTTT-GGAAGCAAGGC
1 CATATTATTACTTTTCGTAAGCTTCCCTC-ATGAGTTTAGG-AGCAAGGC
* * * ** *
34356960 CATATTATCA-TTTCTCGTAAGCCTTCCCTCAAGAGTCTT-GAAATAGGGC
1 CATATTATTACTTT-TCGTAAG-CTTCCCTCATGAGT-TTAGGAGCAAGGC
* * * *
34357009 CATATTATTAC-TTTCGATAAACATCCC-CAATGCGTTTAGGATC-AGGAC
1 CATATTATTACTTTTCG-TAAGCTTCCCTC-ATGAGTTTAGGAGCAAGG-C
* *
34357057 CATATTATTACTTTTCGTAAGTTTCCCCTCATG-GATTTAGGAGCAAAAG-
1 CATATTATTACTTTTCGTAAGCTT-CCCTCATGAG-TTTAGGAGC-AAGGC
34357106 CATATTATTACTTCTT-GTAAGCCTTCCCTCATGAGTTTAGGAGCAAGGC
1 CATATTATTACTT-TTCGTAAG-CTTCCCTCATGAGTTTAGGAGCAAGGC
*
34357155 CATTTTATTA-TCTTTCGTAAAGCCTTCCCCTCAT
1 CATATTATTACT-TTTCGT-AAG-CTT-CCCTCAT
34357189 ATGTTAAGAA
Statistics
Matches: 182, Mismatches: 25, Indels: 42
0.73 0.10 0.17
Matches are distributed among these distances:
47 5 0.03
48 40 0.22
49 104 0.57
50 24 0.13
51 9 0.05
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (48 bp):
CATATTATTACTTTTCGTAAGCTTCCCTCATGAGTTTAGGAGCAAGGC
Found at i:34358911 original size:35 final size:35
Alignment explanation
Indices: 34358866--34358935 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
34358856 TATCCTTAAT
34358866 TTTTTTTATCTATTTGCATTAATGTCGTTACATGA
1 TTTTTTTATCTATTTGCATTAATGTCGTTACATGA
34358901 TTTTTTTATCTATTTGCATTAATGTCGTTACATGA
1 TTTTTTTATCTATTTGCATTAATGTCGTTACATGA
34358936 GTTAATTCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.54
Consensus pattern (35 bp):
TTTTTTTATCTATTTGCATTAATGTCGTTACATGA
Found at i:34361295 original size:21 final size:21
Alignment explanation
Indices: 34361260--34361320 Score: 56
Period size: 21 Copynumber: 2.9 Consensus size: 21
34361250 ACATCTACTT
*
34361260 AGGGAAATTATAATCCAA-AAC
1 AGGG-AATTACAATCCAACAAC
34361281 AAGGGAATTACAAT-CAACAAC
1 -AGGGAATTACAATCCAACAAC
*
34361302 AGTGGAACTACAAT-CAACA
1 AG-GGAATTACAATCCAACA
34361321 CACTCAGATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 5 0.14
21 26 0.74
22 4 0.11
ACGTcount: A:0.51, C:0.18, G:0.15, T:0.16
Consensus pattern (21 bp):
AGGGAATTACAATCCAACAAC
Found at i:34376340 original size:31 final size:31
Alignment explanation
Indices: 34376299--34376360 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
34376289 CATGTGGGCG
*
34376299 ACACGGGCGTGTGGGCCCACAAGGGTAAACC
1 ACACAGGCGTGTGGGCCCACAAGGGTAAACC
* *
34376330 ACACAGGCGTGTGGGCCCACACGGGTGAACC
1 ACACAGGCGTGTGGGCCCACAAGGGTAAACC
34376361 CAGGAGTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.31, G:0.35, T:0.10
Consensus pattern (31 bp):
ACACAGGCGTGTGGGCCCACAAGGGTAAACC
Found at i:34380996 original size:45 final size:46
Alignment explanation
Indices: 34380932--34381106 Score: 216
Period size: 45 Copynumber: 3.8 Consensus size: 46
34380922 TGTAACCCGC
*
34380932 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* *
34380977 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* *
34381027 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
34381070 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
34381107 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 19
0.80 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 36 0.32
46 29 0.26
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:34381097 original size:93 final size:92
Alignment explanation
Indices: 34380939--34381109 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 92
34380929 CGCCCATAAG
*
34380939 CGAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
34381004 CGAGTTCGGATGCCTAGTTACATCTCA
66 CGAGTTCGGATGCCTAGTTACATCTCA
*
34381031 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34381096 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
34381110 TCAACCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 28 0.37
93 48 0.63
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (92 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCA
Found at i:34388612 original size:93 final size:93
Alignment explanation
Indices: 34388500--34388671 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
34388490 CGCCCATAAG
*
34388500 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
34388564 AACGAGTTCGGATGCCTAGTTACATCTCA
65 AACGAGTTCGGATGCCTAGTTACATCTCA
*
34388593 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
34388658 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
34388672 TCAATCATCC
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:34388666 original size:46 final size:46
Alignment explanation
Indices: 34388493--34388668 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
34388483 TGTAACCCGC
* *
34388493 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* *
34388539 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
34388589 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
34388632 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
34388669 TGCTCAATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 61 0.55
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:34408737 original size:44 final size:44
Alignment explanation
Indices: 34408615--34408761 Score: 172
Period size: 44 Copynumber: 3.4 Consensus size: 44
34408605 ATAATTATGG
* *
34408615 GCACTTAGTGTGCGAAATTGAGATAGCTTCGGATATATATATTT
1 GCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATATTT
* * * *
34408659 CCACTTAGTGTGTGAGAATGAGATAGCTTCGGCTATATATATAT
1 GCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATATTT
* * * *
34408703 GCACTTAGTGTGCGAGATTGATACAGTTTTGGCTAT-T-TATTT
1 GCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATATTT
*
34408745 GGCACTAAGTGTGCGAG
1 -GCACTTAGTGTGCGAG
34408762 TTTCCCAAAT
Statistics
Matches: 87, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
42 4 0.05
43 16 0.18
44 67 0.77
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.35
Consensus pattern (44 bp):
GCACTTAGTGTGCGAGATTGAGATAGCTTCGGCTATATATATTT
Found at i:34409604 original size:21 final size:20
Alignment explanation
Indices: 34409564--34409604 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
34409554 CTAAACCGAT
* *
34409564 CACTTATAAAAATTTCTGAA
1 CACTTAGAAAAATTTATGAA
34409584 CACTTAGAAAAATTTTATGAA
1 CACTTAGAAAAA-TTTATGAA
34409605 AACATAGGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (20 bp):
CACTTAGAAAAATTTATGAA
Found at i:34410452 original size:43 final size:43
Alignment explanation
Indices: 34410403--34410541 Score: 138
Period size: 43 Copynumber: 3.2 Consensus size: 43
34410393 TATCCCATAT
* *
34410403 ATGGTCTTACATGCTATCATATATCGATGCCACTGTCCCAGAC
1 ATGGTCTTACATGATATCATATATCGATGCCAATGTCCCAGAC
* * * * *
34410446 AGGGTCTTACACGAAATCA-ATTAACGATGCCAAAGTCCCAGAC
1 ATGGTCTTACATGATATCATA-TATCGATGCCAATGTCCCAGAC
* * * * *
34410489 ATGGTCTTACATGTTATC-TCTATACAAAGCCAATGACCCAGAC
1 ATGGTCTTACATGATATCATATAT-CGATGCCAATGTCCCAGAC
34410532 ATGGTCTTAC
1 ATGGTCTTAC
34410542 GTGTAATCAC
Statistics
Matches: 76, Mismatches: 17, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
42 3 0.04
43 73 0.96
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGGTCTTACATGATATCATATATCGATGCCAATGTCCCAGAC
Found at i:34412469 original size:43 final size:42
Alignment explanation
Indices: 34412331--34412499 Score: 151
Period size: 43 Copynumber: 4.0 Consensus size: 42
34412321 ACATAAGGTC
* * * * * *
34412331 ATACAATGAC-ATATCCCAGATATGGGCTTACATGTTATCAT
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAA
* * * * * *
34412372 ATATCGATGCCACTGTCCCAAGATAGGGTCTTACATGAAATCGA
1 ATA-CAATGCCAATGTCCC-AGACATGGTCTTACATGTAATCAA
* *
34412416 TTAACGATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 AT-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCA-A
* *
34412460 ATACAATGCCAATGTCCCAAACATGGTCTTATATGTAATC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATC
34412500 CCTACTCGAT
Statistics
Matches: 103, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
41 3 0.03
42 5 0.05
43 59 0.57
44 35 0.34
45 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.28
Consensus pattern (42 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAA
Found at i:34414921 original size:80 final size:79
Alignment explanation
Indices: 34414697--34414947 Score: 271
Period size: 80 Copynumber: 3.2 Consensus size: 79
34414687 ATGTCCGGGC
* * * *
34414697 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGCT-AGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
34414760 AGATACTAATTCCGGGC-
64 AG-TACTAAATCC-GGCT
* * *
34414777 TAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
34414840 GTTACTAAATCCGGCT
65 G-TACTAAATCCGGCT
* **
34414856 TAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
34414921 TAGCTATATCCGG-T
66 TA-CTAAATCCGGCT
* *
34414935 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
34414948 TACGTGATTT
Statistics
Matches: 146, Mismatches: 18, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
78 5 0.03
79 69 0.47
80 70 0.48
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCTAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TACTAAATCCGGCT
Found at i:34414928 original size:40 final size:40
Alignment explanation
Indices: 34414690--34414914 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
34414680 TCGAATGATG
* * * *
34414690 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
34414730 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34414770 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34414809 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34414849 TCC-GGCTTAAGTCCCGAAGGCATTTGTGCTAGTTACTATAA
1 TCCGGGC-TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
34414890 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34414915 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 16, Indels: 14
0.84 0.08 0.07
Matches are distributed among these distances:
39 36 0.22
40 113 0.70
41 13 0.08
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34414936 original size:119 final size:119
Alignment explanation
Indices: 34414690--34414947 Score: 285
Period size: 119 Copynumber: 2.2 Consensus size: 119
34414680 TCGAATGATG
* *
34414690 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* **
34414755 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
* * *
34414809 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGG-CTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGAC-TAAGAT-CCGAAGGCA
* * * * *
34414871 TTTGTGCTAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATA
63 TTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-CTAAA
* *
34414929 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
34414948 TACGTGATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
118 4 0.03
119 83 0.70
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
Found at i:34419850 original size:46 final size:46
Alignment explanation
Indices: 34419746--34419917 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
34419736 GGCTATTGTG
* * * * *
34419746 AGCTAGTGTAAGACCACGTCTGGGACATGGCATTAGCATTGAGATGA
1 AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCAACCTCGAGATGA
*
34419793 GAGCTGGTGTAAGACATGTCTGGGACAT-GCATCAACCTCGAGATGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGGCATCAACCTCGAGATG-A
*
34419840 AGCTAGTGTAAGACATGTCTGGGACAT-GCATC-AGCTACGAGATG-
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCAACCT-CGAGATGA
*
34419884 AGCTAGTGTAAGACGATGTCTGAGACATGGCATC
1 AGCTAGTGTAAGAC-ATGTCTGGGACATGGCATC
34419918 GCCATCCTAC
Statistics
Matches: 111, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
44 14 0.13
45 15 0.14
46 56 0.50
47 14 0.13
48 12 0.11
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGGCATCAACCTCGAGATGA
Found at i:34420064 original size:30 final size:30
Alignment explanation
Indices: 34420028--34420090 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
34420018 GTGACGTGAG
34420028 TAATACAAGTACCTATTCGTTATATATATA
1 TAATACAAGTACCTATTCGTTATATATATA
34420058 TAATACAAGTACCTATTCGTTATATATATA
1 TAATACAAGTACCTATTCGTTATATATATA
34420088 TAA
1 TAA
34420091 GATGAGAGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.40
Consensus pattern (30 bp):
TAATACAAGTACCTATTCGTTATATATATA
Found at i:34421117 original size:21 final size:22
Alignment explanation
Indices: 34421078--34421118 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
34421068 TCTAATCGGT
34421078 CACACGGGTGTGTTGCCCCTTC
1 CACACGGGTGTGTTGCCCCTTC
34421100 CACACGGGTGTG-TGCCCCT
1 CACACGGGTGTGTTGCCCCT
34421119 GTGTCTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.10, C:0.37, G:0.29, T:0.24
Consensus pattern (22 bp):
CACACGGGTGTGTTGCCCCTTC
Found at i:34422270 original size:20 final size:20
Alignment explanation
Indices: 34422247--34422300 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
34422237 AAAAATTATA
*
34422247 AAAAATTCAAAATAATTTTC
1 AAAAATTTAAAATAATTTTC
* * *
34422267 AAAATTTTGAAATAATTTTT
1 AAAAATTTAAAATAATTTTC
34422287 AAAAATTTAAAATA
1 AAAAATTTAAAATA
34422301 TTTATAAAAG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.39
Consensus pattern (20 bp):
AAAAATTTAAAATAATTTTC
Found at i:34422308 original size:19 final size:21
Alignment explanation
Indices: 34422242--34422309 Score: 70
Period size: 20 Copynumber: 3.4 Consensus size: 21
34422232 TCAACAAAAA
*
34422242 TTATAAAAAATTCAAAATAAT
1 TTATAAAAAATTTAAAATAAT
* * *
34422263 TT-TCAAAATTTTGAAATAAT
1 TTATAAAAAATTTAAAATAAT
*
34422283 TT-TTAAAAATTTAAAAT-AT
1 TTATAAAAAATTTAAAATAAT
34422302 TTATAAAA
1 TTATAAAA
34422310 GTTTTTCTTT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
19 4 0.11
20 32 0.84
21 2 0.05
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (21 bp):
TTATAAAAAATTTAAAATAAT
Found at i:34422342 original size:20 final size:19
Alignment explanation
Indices: 34422317--34422359 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
34422307 AAAGTTTTTC
*
34422317 TTTTTTTGATAAAATTATAA
1 TTTTTTT-ATAAAATAATAA
*
34422337 TTTTTTTCTAAAATAATAA
1 TTTTTTTATAAAATAATAA
34422356 TTTT
1 TTTT
34422360 AGATACATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (19 bp):
TTTTTTTATAAAATAATAA
Found at i:34426342 original size:39 final size:39
Alignment explanation
Indices: 34426298--34426609 Score: 513
Period size: 39 Copynumber: 8.1 Consensus size: 39
34426288 ATGCAAGACA
* *
34426298 CTGGAAATGTATCTGAGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
34426337 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
34426376 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
34426415 CTGGAAATGTATACGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
34426454 CTGGAAATATATCC-GGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
34426492 CTGGAAATGTAT-CGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
34426530 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
34426569 CTGGAAATGTAT-CGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
34426607 CTG
1 CTG
34426610 ATAATATAAT
Statistics
Matches: 255, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
37 1 0.00
38 95 0.37
39 159 0.62
ACGTcount: A:0.22, C:0.25, G:0.30, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:34426549 original size:77 final size:78
Alignment explanation
Indices: 34426298--34426617 Score: 531
Period size: 77 Copynumber: 4.1 Consensus size: 78
34426288 ATGCAAGACA
* * * * *
34426298 CTGGAAATGTATCTGAGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATACGGGCTAAAGTCC
34426363 CGCAGGCTTCGTG
66 CGCAGGCTTCGTG
34426376 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATACGGGCTAAAGTCC
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATACGGGCTAAAGTCC
34426441 CGCAGGCTTCGTG
66 CGCAGGCTTCGTG
34426454 CTGGAAATATATCC-GGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTAT-CGGGCTAAAGTCC
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATACGGGCTAAAGTCC
34426517 CGCAGGCTTCGTG
66 CGCAGGCTTCGTG
* *
34426530 CTGGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTAT-CGGGTTAAAGTCC
1 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATACGGGCTAAAGTCC
*
34426594 CGCAGGCTTTGTG
66 CGCAGGCTTCGTG
34426607 CT-GATAATATA
1 CTGGA-AATATA
34426618 ATTTCGGGTT
Statistics
Matches: 231, Mismatches: 9, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
76 41 0.18
77 103 0.45
78 87 0.38
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.24
Consensus pattern (78 bp):
CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATACGGGCTAAAGTCC
CGCAGGCTTCGTG
Found at i:34467518 original size:47 final size:47
Alignment explanation
Indices: 34467464--34467610 Score: 195
Period size: 47 Copynumber: 3.1 Consensus size: 47
34467454 TTAGGATTTT
** * *
34467464 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34467511 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
34467558 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
34467605 ATGTGA
1 ATGTGA
34467611 AATATGTATG
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:34467566 original size:25 final size:25
Alignment explanation
Indices: 34467493--34467566 Score: 59
Period size: 23 Copynumber: 3.1 Consensus size: 25
34467483 GTATATATGA
*
34467493 GATAAGGCCGAATGGCCAATGTGAT
1 GATAAGGCCGAATGGCCAATGTGGT
* * *
34467518 GA-ATGTG-AGCAT-G-CATATGT-GT
1 GATAAG-GCCGAATGGCCA-ATGTGGT
34467540 GATAAGGCCGAATGGCCAATGTGGT
1 GATAAGGCCGAATGGCCAATGTGGT
34467565 GA
1 GA
34467567 ATATGAACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 14
0.62 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.29
24 10 0.29
25 9 0.26
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.23
Consensus pattern (25 bp):
GATAAGGCCGAATGGCCAATGTGGT
Found at i:34467738 original size:98 final size:96
Alignment explanation
Indices: 34467581--34467764 Score: 307
Period size: 98 Copynumber: 1.9 Consensus size: 96
34467571 GAACATGCAT
*
34467581 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
34467646 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
34467677 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
34467741 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
34467765 GGCGATGTGC
Statistics
Matches: 82, Mismatches: 3, Indels: 4
0.92 0.03 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 53 0.65
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:34467780 original size:50 final size:48
Alignment explanation
Indices: 34467580--34467764 Score: 300
Period size: 48 Copynumber: 3.8 Consensus size: 48
34467570 TGAACATGCA
34467580 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
34467628 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
34467676 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
34467726 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
34467765 GGCGATGTGC
Statistics
Matches: 126, Mismatches: 7, Indels: 8
0.89 0.05 0.06
Matches are distributed among these distances:
47 1 0.01
48 80 0.63
49 4 0.03
50 40 0.32
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:34467956 original size:37 final size:37
Alignment explanation
Indices: 34467910--34467989 Score: 124
Period size: 37 Copynumber: 2.2 Consensus size: 37
34467900 GGAAATATAT
* *
34467910 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGAGTAAGACCCGATAACTACGTGTGGAGATTTCG
* *
34467947 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTTCG
1 TCCGAGTAAGACCCGATAACTACGTGTGGAGATTTCG
34467984 TCCGAG
1 TCCGAG
34467990 CTAAAGGTCT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (37 bp):
TCCGAGTAAGACCCGATAACTACGTGTGGAGATTTCG
Found at i:34469254 original size:40 final size:40
Alignment explanation
Indices: 34469195--34469368 Score: 285
Period size: 40 Copynumber: 4.3 Consensus size: 40
34469185 GTTCATTGAG
* * * *
34469195 AGTGATATACCCGGGCTAAGTCCTGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
34469235 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
*
34469275 AGTGATGTATCCGGACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
* *
34469315 AGTGATGTATCTGGACTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
34469355 AGTGATGTATCCGG
1 AGTGATGTATCCGG
34469369 GCTATGTAAC
Statistics
Matches: 125, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 125 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
Found at i:34470179 original size:36 final size:37
Alignment explanation
Indices: 34470132--34470209 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
34470122 TTATTACGAA
* * *
34470132 GTCTTACCCGGACATAATCTCCACACGAAGTTATC-G
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
34470168 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
34470205 GTCTT
1 GTCTT
34470210 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 31 0.84
37 6 0.16
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:34470407 original size:25 final size:24
Alignment explanation
Indices: 34470379--34470456 Score: 61
Period size: 25 Copynumber: 3.2 Consensus size: 24
34470369 CTCGGCCCTG
34470379 TCACATATATACACTTTCACATTCA
1 TCACATATATACA-TTTCACATTCA
* ** *** *
34470404 TCACAT-CAGCCATTAGGC-TTTA
1 TCACATATATACATTTCACATTCA
34470426 TCACATATATACAGTTTCACATTCA
1 TCACATATATACA-TTTCACATTCA
34470451 TCACAT
1 TCACAT
34470457 CGGCCATTAG
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 9 0.25
23 6 0.17
24 6 0.17
25 15 0.42
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (24 bp):
TCACATATATACATTTCACATTCA
Found at i:34470490 original size:94 final size:94
Alignment explanation
Indices: 34470328--34471701 Score: 1434
Period size: 94 Copynumber: 14.9 Consensus size: 94
34470318 CCCTTCGGGA
* * * * * * * *
34470328 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
34470393 TTTCACATTCATCACATCAGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
34470422 TTTATCACATATATACAGTTTCACATTCATCACATCGGCCATTAGGCCTTATCCCATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
34470487 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
34470516 CTTATCACATATATAAACTTTCACATTCATCACATCAGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
34470581 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
34470610 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
34470675 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
34470708 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
34470773 ACTTTCACATTCATCACATCGGCCTTTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
34470804 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
34470869 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
34470900 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
34470965 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * **
34470994 CTTATCACATATATATACATT-AGGCCTT-ATCACAT-----ATATATACACTT-TCAC--AT-T
1 CTTATCACATATATACACTTTCA--CATTCATCACATCGGCCAT-TAGGC-CTTATCACATATAT
** * *
34471048 -CA---TCACA-TCGGC-CATTAGGCC-TTA-TC
62 ACACTTTCACATTCATCACA-TCGGCCATTAGGC
* * * *
34471074 ACATATATATACACT-T-T-CACATTCATCA--CATCGGCCATTAGGCC--T------TATCACA
1 -C-T-TAT-CACA-TATATACACTTTCA-CATTCATC--ACA-TCGGCCATTAGGCCTTATCACA
*
34471126 TATATTCACTTTCACATTCATCACATCGGCCATTAGGC
57 TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34471164 CTTATCACATATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
34471229 TTTCACATTCATCACATTGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * **
34471258 CTTATCACATATATATACATT-AGGCCTT-ATCACAT-----ATATATACACTT-TCAC--AT-T
1 CTTATCACATATATACACTTTCA--CATTCATCACATCGGCCAT-TAGGC-CTTATCACATATAT
** * *
34471312 -CA---TCACA-TCGGC-CATTAGGCC-TTA-TC
62 ACACTTTCACATTCATCACA-TCGGCCATTAGGC
* * * * * *
34471338 ACATATATATACACT-T-T-CACATTCATCA--CATCGGCCATTAGGCC-TTA----TCA-CATA
1 -C-T-TAT-CACA-TATATACACTTTCA-CATTCATC--ACA-TCGGCCATTAGGCCTTATCACA
34471392 TATATACACTTTCACATTCATCACATCGGCCATTAGGC
57 TATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34471430 CTTATCACATATATCCACTTTCACATTCATCACATTGGCCTTTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
34471495 ACTTTCACATTCATCACATCGTCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
34471526 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
34471591 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
34471620 ATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCATATATGCA-
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
34471684 TGTTCACATCCATCACAT
66 T-TTCACATTCATCACAT
34471702 AGAATCCTAA
Statistics
Matches: 1099, Mismatches: 86, Indels: 190
0.80 0.06 0.14
Matches are distributed among these distances:
79 1 0.00
80 6 0.01
81 18 0.02
82 35 0.03
83 25 0.02
84 14 0.01
85 4 0.00
86 14 0.01
87 18 0.02
88 31 0.03
89 30 0.03
90 31 0.03
91 16 0.01
92 1 0.00
93 5 0.00
94 473 0.43
95 6 0.01
96 275 0.25
98 96 0.09
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:34470643 original size:49 final size:49
Alignment explanation
Indices: 34470328--34471680 Score: 1251
Period size: 47 Copynumber: 28.3 Consensus size: 49
34470318 CCCTTCGGGA
* * * * *
34470328 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34470375 CCTGTCAC--ATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34470422 TTTATCAC--ATATATACAGTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34470469 CTTATC-C-CATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34470516 CTTATCACATATATA-A-ACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34470563 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34470610 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34470659 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34470708 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34470757 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCTTTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34470804 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34470853 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
34470900 CTTATCAC--ATATATACACTTTCACATTCATCACATCAGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34470947 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** * **
34470994 CTTATCACATATATATACA-TTAGGCCTT-ATCACAT-----ATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAT-TAGGC
* * * * **
34471037 ACTT-TCACAT-TCATCACATCGGCCATT-AGGCCTT-ATCACAT-----ATATATAC
1 -CTTATCACATAT-AT-ATA-C--ACTTTCA--CATTCATCACATCGGCCAT-TAGGC
* * * * * **
34471086 ACTT-TCACAT-T-CAT-CAC-ATCGGCCATT-AGGC-CTTATC--ACATATATTC
1 -CTTATCACATATATATACACTTTC--ACATTCA-TCAC--ATCGGCCAT-TAGGC
* * * * * **
34471133 ACTT-TCACAT-T-CAT-CAC-ATCGGCCATT-AGGC-CTTATC--ACATATATAC
1 -CTTATCACATATATATACACTTTC--ACATTCA-TCAC--ATCGGCCAT-TAGGC
* *
34471180 ACTT-TCACAT-TCATCACATCAGCTATT-AGGCCTT-ATCACAT-----ATATA--C
1 -CTTATCACATAT-AT-ATA-CA-CT-TTCA--CATTCATCACATCGGCCAT-TAGGC
* * ****
34471227 ACTT-TCACAT-T-CAT-CACATTGGC-CATTAGGCCTTATCACATATATATACATTAGGC
1 -CTTATCACATATATATACAC-TT-TCACATT----C--ATCAC--AT-CGGCCATTAGGC
34471283 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34471332 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34471381 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
34471430 CTTATCAC--ATATATCCACTTTCACATTCATCACATTGGCCTTTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34471477 CTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34471526 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
34471573 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34471620 ATTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
34471667 CTTATCTCATATAT
1 CTTATCACATATAT
34471681 GCATGTTCAC
Statistics
Matches: 1161, Mismatches: 73, Indels: 142
0.84 0.05 0.10
Matches are distributed among these distances:
40 3 0.00
41 3 0.00
42 12 0.01
43 12 0.01
44 9 0.01
45 6 0.01
46 4 0.00
47 653 0.56
48 8 0.01
49 403 0.35
50 3 0.00
52 9 0.01
53 2 0.00
54 8 0.01
55 6 0.01
56 7 0.01
57 2 0.00
58 8 0.01
59 3 0.00
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:34471017 original size:25 final size:25
Alignment explanation
Indices: 34470986--34471037 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
34470976 TCACATCGGC
34470986 CATTAGGCCTTATCACATATATATA
1 CATTAGGCCTTATCACATATATATA
34471011 CATTAGGCCTTATCACATATATATA
1 CATTAGGCCTTATCACATATATATA
34471036 CA
1 CA
34471038 CTTTCACATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.35
Consensus pattern (25 bp):
CATTAGGCCTTATCACATATATATA
Found at i:34471052 original size:27 final size:25
Alignment explanation
Indices: 34470995--34471055 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
34470985 CCATTAGGCC
** *
34470995 TTATCACATATATATACATTAGGCC
1 TTATCACATATATATACATTACACA
*
34471020 TTATCACATATATATACACTTTCACA
1 TTATCACATATATATACA-TTACACA
34471046 TTCATCACAT
1 TT-ATCACAT
34471056 CGGCCATTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 18 0.60
26 5 0.17
27 7 0.23
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (25 bp):
TTATCACATATATATACATTACACA
Found at i:34471181 original size:264 final size:264
Alignment explanation
Indices: 34470749--34471701 Score: 1513
Period size: 264 Copynumber: 3.5 Consensus size: 264
34470739 TCACATCGGC
*
34470749 CATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCTTTAGGCCTTATCAC
1 CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
34470812 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
66 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTCACTTTCAC
34470877 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCTAT
131 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCTAT
34470942 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
196 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
34471007 TATA
261 TATA
34471011 CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
34471076 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTCACTTTCAC
66 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTCACTTTCAC
34471141 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCTAT
131 ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCTAT
*
34471206 TAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATA
196 TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
34471271 TATA
261 TATA
34471275 CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
34471340 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTC
66 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT-T-CACTTTC
* **
34471405 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATCCACTTTCACATTCATCACATTGGCC
129 ACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAG-C
*
34471470 T-TTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGTCCATTAGGCCTTATCAC
193 TATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
34471534 ATATATACACTTTCA
256 ATATAT--A---T-A
* *
34471549 CATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCA
1 CA-T--T---A--GGCC-TTA----TCA-CATATATATACACTTTCACATTCATCACATCGGCCA
* *
34471614 TTAGGCATTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCTCAT
52 TTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT
* *
34471677 ATATGCA-TGTTCACATCCATCACAT
117 ATATTCACT-TTCACATTCATCACAT
34471702 AGAATCCTAA
Statistics
Matches: 649, Mismatches: 14, Indels: 34
0.93 0.02 0.05
Matches are distributed among these distances:
262 16 0.02
264 363 0.56
265 1 0.00
266 81 0.12
267 2 0.00
268 51 0.08
270 1 0.00
273 1 0.00
274 3 0.00
275 1 0.00
277 1 0.00
280 1 0.00
282 4 0.01
283 4 0.01
284 17 0.03
286 52 0.08
287 2 0.00
288 48 0.07
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (264 bp):
CATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATTCACTTTCAC
ATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCAGCTAT
TAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TATA
Found at i:34471281 original size:25 final size:25
Alignment explanation
Indices: 34471250--34471301 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
34471240 TCACATTGGC
34471250 CATTAGGCCTTATCACATATATATA
1 CATTAGGCCTTATCACATATATATA
34471275 CATTAGGCCTTATCACATATATATA
1 CATTAGGCCTTATCACATATATATA
34471300 CA
1 CA
34471302 CTTTCACATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.35
Consensus pattern (25 bp):
CATTAGGCCTTATCACATATATATA
Found at i:34471316 original size:27 final size:25
Alignment explanation
Indices: 34471259--34471319 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
34471249 CCATTAGGCC
** *
34471259 TTATCACATATATATACATTAGGCC
1 TTATCACATATATATACATTACACA
*
34471284 TTATCACATATATATACACTTTCACA
1 TTATCACATATATATACA-TTACACA
34471310 TTCATCACAT
1 TT-ATCACAT
34471320 CGGCCATTAG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 18 0.60
26 5 0.17
27 7 0.23
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (25 bp):
TTATCACATATATATACATTACACA
Found at i:34471652 original size:25 final size:25
Alignment explanation
Indices: 34471576--34471654 Score: 74
Period size: 25 Copynumber: 3.3 Consensus size: 25
34471566 ATTAGGCCTT
34471576 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
**** ***
34471601 ATCACAT-CGGCCA-TTAGGCATT-
1 ATCACATATATACACTTTCACATTC
34471623 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
34471648 ATCACAT
1 ATCACAT
34471655 CGGCCATTAG
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 7 0.19
23 8 0.22
24 8 0.22
25 14 0.38
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:34474269 original size:40 final size:40
Alignment explanation
Indices: 34474186--34474288 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 40
34474176 AACCTAAGTT
* *
34474186 CCGAAGAGCATTCGTGCTAGTGATATATCCATGCTAAACC
1 CCGAAGAGCATTCGTGCTGGTGATATATCCAGGCTAAACC
* * ***
34474226 CCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTC
1 CCGAAGAGCATTCGTGCTGGTGATATATCCAGGCTAAACC
* *
34474266 CCGAAGAGCAATCATGCTGGTGA
1 CCGAAGAGCATTCGTGCTGGTGA
34474289 CGTGTATTCG
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 53 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGAAGAGCATTCGTGCTGGTGATATATCCAGGCTAAACC
Found at i:34478391 original size:48 final size:48
Alignment explanation
Indices: 34478324--34478508 Score: 277
Period size: 48 Copynumber: 3.8 Consensus size: 48
34478314 ATGAACATCA
34478324 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
34478372 TATAATGTGGT-AAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TAT-ATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* *
34478420 -ATATGTGGTAAAGCTGAAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCG-AATGGCT-AATGTG-AA-ATATGTATGAGATATG
*
34478470 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
34478509 GGCGATGTGC
Statistics
Matches: 124, Mismatches: 5, Indels: 16
0.86 0.03 0.11
Matches are distributed among these distances:
46 7 0.06
47 8 0.06
48 57 0.46
49 11 0.09
50 25 0.20
51 16 0.13
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:34478487 original size:98 final size:95
Alignment explanation
Indices: 34478325--34478508 Score: 282
Period size: 98 Copynumber: 1.9 Consensus size: 95
34478315 TGAACATCAT
*
34478325 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATAATGTGGTAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAATGTGGTAAGCCGA
34478390 ATGGCTAATGTGAAATATGTATGAGATATG
66 ATGGCTAATGTGAAATATGTATGAGATATG
*
34478420 ATATGTGGTAAAGCTGAAATGG-TCAATGTGAAATATATATATGAGATATGTAT-ATGTGGTAAA
1 ATATGTGGTAAAGCCG-AATGGCT-AATGTG-AA-ATATATATGAGATATGTATAATGTGGT-AA
*
34478483 GCCGAATGGCTAGTGTGAAATATGTA
61 GCCGAATGGCTAATGTGAAATATGTA
34478509 GGCGATGTGC
Statistics
Matches: 81, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
95 16 0.20
96 11 0.14
97 9 0.11
98 45 0.56
ACGTcount: A:0.36, C:0.06, G:0.27, T:0.31
Consensus pattern (95 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATAATGTGGTAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATG
Done.