Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 111 of 290
Found at i:34478696 original size:37 final size:37
Alignment explanation
Indices: 34478650--34478721 Score: 117
Period size: 37 Copynumber: 1.9 Consensus size: 37
34478640 TGGAATATAT
*
34478650 TCCGAGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGAGTAAGACCCGATAACTACGTGTGGAGATTTTG
* *
34478687 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGAGTAAGACCCGATAACTACGTGTGGAGATTT
34478722 CGTCTGAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (37 bp):
TCCGAGTAAGACCCGATAACTACGTGTGGAGATTTTG
Found at i:34480167 original size:40 final size:40
Alignment explanation
Indices: 34479924--34480155 Score: 311
Period size: 40 Copynumber: 5.8 Consensus size: 40
34479914 GTTCATTGAG
*
34479924 AGTGATATACCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *** *
34479964 AGTGATGTATCCACACTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
34480004 AGTGATGTATCCGGACTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
34480044 AGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
** **
34480084 AGTGATATATCCATGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
34480124 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
34480156 ATCATGCTGG
Statistics
Matches: 168, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 168 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:34480361 original size:25 final size:25
Alignment explanation
Indices: 34480331--34480381 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
34480321 TGTGTAAAAC
34480331 GAATGAATAAGA-GCACTATGTGTGT
1 GAATG-ATAAGAGGCACTATGTGTGT
* *
34480356 GAATGATTAGAGGCACTGTGTGTGT
1 GAATGATAAGAGGCACTATGTGTGT
34480381 G
1 G
34480382 CGAATTCCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.29
Consensus pattern (25 bp):
GAATGATAAGAGGCACTATGTGTGT
Found at i:34484091 original size:47 final size:47
Alignment explanation
Indices: 34484037--34484183 Score: 195
Period size: 47 Copynumber: 3.1 Consensus size: 47
34484027 TTAGGATTTT
** * *
34484037 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
34484084 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
34484131 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
34484178 ATGTGA
1 ATGTGA
34484184 AATATGTATG
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
47 86 1.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:34484139 original size:25 final size:25
Alignment explanation
Indices: 34484066--34484139 Score: 59
Period size: 23 Copynumber: 3.1 Consensus size: 25
34484056 GTATATATGA
*
34484066 GATAAGGCCGAATGGCCAATGTGAT
1 GATAAGGCCGAATGGCCAATGTGGT
* * *
34484091 GA-ATGTG-AGCAT-G-CATATGT-GT
1 GATAAG-GCCGAATGGCCA-ATGTGGT
34484113 GATAAGGCCGAATGGCCAATGTGGT
1 GATAAGGCCGAATGGCCAATGTGGT
34484138 GA
1 GA
34484140 ATATGAACAT
Statistics
Matches: 35, Mismatches: 7, Indels: 14
0.62 0.12 0.25
Matches are distributed among these distances:
22 6 0.17
23 10 0.29
24 10 0.29
25 9 0.26
ACGTcount: A:0.30, C:0.14, G:0.34, T:0.23
Consensus pattern (25 bp):
GATAAGGCCGAATGGCCAATGTGGT
Found at i:34484311 original size:98 final size:96
Alignment explanation
Indices: 34484154--34484337 Score: 298
Period size: 98 Copynumber: 1.9 Consensus size: 96
34484144 GAACATGCAT
* *
34484154 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
34484219 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
*
34484250 ATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATATATGAGATATGTATATGTGGTAAAGC
*
34484314 CAAATGGCTAGTGTGAAATATGTA
63 CAAATGGCTAATGTGAAATATGTA
34484338 GGCGATGCGC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 26 0.32
97 2 0.02
98 52 0.64
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAAAGCCAA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:34484320 original size:50 final size:48
Alignment explanation
Indices: 34484153--34484337 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
34484143 TGAACATGCA
34484153 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
34484201 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
* * *
34484249 CATATGTGGTAAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCT-AATGTG-AA-ATATGTATGAGATATG
* *
34484299 TATATGTGGTAAAGCCAAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTA
34484338 GGCGATGCGC
Statistics
Matches: 125, Mismatches: 8, Indels: 8
0.89 0.06 0.06
Matches are distributed among these distances:
47 1 0.01
48 80 0.64
49 4 0.03
50 39 0.31
51 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:34484524 original size:37 final size:37
Alignment explanation
Indices: 34484483--34484664 Score: 321
Period size: 37 Copynumber: 4.9 Consensus size: 37
34484473 GGAAATATAT
34484483 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
34484520 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
34484557 TCCTGGTAAGACCCGATGACTAC-TGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
34484593 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
** *
34484630 TCCGGGTAAGACCCGAAAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
34484665 CGTCTGAGCT
Statistics
Matches: 139, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
36 35 0.25
37 104 0.75
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:34484607 original size:73 final size:74
Alignment explanation
Indices: 34484483--34484664 Score: 321
Period size: 73 Copynumber: 2.5 Consensus size: 74
34484473 GGAAATATAT
34484483 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATGACTACGTGTG
34484548 GAGATTTTG
66 GAGATTTTG
*
34484557 TCCTGGTAAGACCCGATGACTAC-TGTGGAGATTTTGTCCGGGTAAGACCCGATGACTACGTGTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATGACTACGTGTG
34484621 GAGATTTTG
66 GAGATTTTG
** *
34484630 TCCGGGTAAGACCCGAAAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
34484665 CGTCTGAGCT
Statistics
Matches: 102, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
73 69 0.68
74 33 0.32
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (74 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTAAGACCCGATGACTACGTGTG
GAGATTTTG
Found at i:34492088 original size:21 final size:20
Alignment explanation
Indices: 34492048--34492088 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
34492038 CTAAACCGAT
* *
34492048 CACTTATAAAAATTTCTGAA
1 CACTTAGAAAAATTTATGAA
34492068 CACTTAGAAAAATTTTATGAA
1 CACTTAGAAAAA-TTTATGAA
34492089 AACATAGGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (20 bp):
CACTTAGAAAAATTTATGAA
Found at i:34492940 original size:43 final size:42
Alignment explanation
Indices: 34492869--34493030 Score: 132
Period size: 43 Copynumber: 3.8 Consensus size: 42
34492859 TAAGCTCGTA
* * * *
34492869 CAATGCC-ATATCCCATATATGGTATTACATGCTATCATATAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATG-TATCATATAT
* * * * * *
34492911 CGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCA-ATTAA
1 CAATGCCAATGTCCCAGACATGGTCTTACATG-TATCATA-TAT
* *
34492954 CAATGCCAAAGTCCCAGACATGGTCTTACATGTAATC-TCTAT
1 CAATGCCAATGTCCCAGACATGGTCTTACATGT-ATCATATAT
* *
34492996 ACAAAGCCAATGTCCCAGACATGGTCTTACGTGTA
1 -CAATGCCAATGTCCCAGACATGGTCTTACATGTA
34493031 ATCACATCTC
Statistics
Matches: 93, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
42 10 0.11
43 83 0.89
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (42 bp):
CAATGCCAATGTCCCAGACATGGTCTTACATGTATCATATAT
Found at i:34494987 original size:43 final size:43
Alignment explanation
Indices: 34494845--34495015 Score: 150
Period size: 43 Copynumber: 4.0 Consensus size: 43
34494835 ACATAAGGTC
* * * * *
34494845 ATACAATGCC-ATATCCCAGATATGGGCTTACATGTTATCA-T
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
* * * * * * *
34494886 ATATCGATGCCACTGTCCCAAGATAGGGTCTTACACGAAATC-GA
1 ATA-CAATGCCAATGTCCC-AGACATGGTCTTACATGTAATCACA
* * *
34494930 TTAACGATGGCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 AT-ACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
*
34494974 ATACAATGCCAATGTCCCAAACATGGTCTTACATGTAATCAC
1 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCAC
34495016 TACTCGATAA
Statistics
Matches: 103, Mismatches: 21, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
41 3 0.03
42 6 0.06
43 60 0.58
44 33 0.32
45 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
Found at i:34495557 original size:28 final size:29
Alignment explanation
Indices: 34495503--34495557 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 29
34495493 ATTTATTTGA
*
34495503 CAATTTAACCCTTCAATTTACACTTTTCT
1 CAATTTAACCCTTCAATTGACACTTTTCT
*
34495532 CAATTTAATCCC-T-AATTGACATTTTT
1 CAATTTAA-CCCTTCAATTGACACTTTT
34495558 TTTCAAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
28 11 0.48
29 9 0.39
30 3 0.13
ACGTcount: A:0.29, C:0.24, G:0.02, T:0.45
Consensus pattern (29 bp):
CAATTTAACCCTTCAATTGACACTTTTCT
Found at i:34500374 original size:46 final size:44
Alignment explanation
Indices: 34500269--34500429 Score: 137
Period size: 46 Copynumber: 3.5 Consensus size: 44
34500259 TGGGCTATTG
** * * *
34500269 TGAGCTAGTGTAAGACCACATCTGGGACATGGCATTAGCATTAAGATGA
1 TGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCA-C-CTACGA-GA
* *
34500318 -GAGCTGGTGTAAGACATGTCTGGGCCATGCATCAACCT-CGAGA
1 TGAGCTAGTGTAAGACATGTCTGGGACATGCATC-ACCTACGAGA
**
34500361 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA
1 TG--AGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGA
*
34500407 TGAGCCAGTGTAAGACGATGTCT
1 TGAGCTAGTGTAAGAC-ATGTCT
34500430 AAGACATGGC
Statistics
Matches: 94, Mismatches: 12, Indels: 16
0.77 0.10 0.13
Matches are distributed among these distances:
43 2 0.02
44 16 0.17
45 9 0.10
46 42 0.45
47 12 0.13
48 13 0.14
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (44 bp):
TGAGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGA
Found at i:34500584 original size:28 final size:28
Alignment explanation
Indices: 34500552--34500609 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
34500542 GTGACGTGAG
34500552 TAATACAAGTACCTATTCGTTATATATA
1 TAATACAAGTACCTATTCGTTATATATA
*
34500580 TAATACAAGTACCTATTTGTTATATATA
1 TAATACAAGTACCTATTCGTTATATATA
34500608 TA
1 TA
34500610 TAAGATGAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.41
Consensus pattern (28 bp):
TAATACAAGTACCTATTCGTTATATATA
Found at i:34501639 original size:21 final size:22
Alignment explanation
Indices: 34501600--34501640 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
34501590 TCTAATCGGT
*
34501600 CACACGGGTGTGTTGCCCCTCC
1 CACACGGGCGTGTTGCCCCTCC
34501622 CACACGGGCGTG-TGCCCCT
1 CACACGGGCGTGTTGCCCCT
34501641 GTGTCTAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.10, C:0.41, G:0.29, T:0.20
Consensus pattern (22 bp):
CACACGGGCGTGTTGCCCCTCC
Found at i:34502827 original size:21 final size:20
Alignment explanation
Indices: 34502792--34502830 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
34502782 AAATAATTCA
*
34502792 AAATAATTTTCAAAATTTCG
1 AAATAATTTTAAAAATTTCG
34502812 AAATAATTTTTAAAAATTT
1 AAATAA-TTTTAAAAATTT
34502831 AAAATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.44
Consensus pattern (20 bp):
AAATAATTTTAAAAATTTCG
Found at i:34502835 original size:20 final size:20
Alignment explanation
Indices: 34502786--34502845 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 20
34502776 ATTACAAAAT
* *
34502786 AATTCAAAATAA-TTTTCAA
1 AATTTAAAATAATTTTTAAA
*
34502805 AATTTCGAAATAATTTTTAAA
1 AATTT-AAAATAATTTTTAAA
*
34502826 AATTTAAAAT-ATTTATAAA
1 AATTTAAAATAATTTTTAAA
34502845 A
1 A
34502846 GTTTTTCTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
19 13 0.38
20 10 0.29
21 11 0.32
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (20 bp):
AATTTAAAATAATTTTTAAA
Found at i:34502880 original size:19 final size:18
Alignment explanation
Indices: 34502856--34502896 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
34502846 GTTTTTCTTT
*
34502856 TTTTTTGATAAAATTATAA
1 TTTTTT-ATAAAATAATAA
*
34502875 TTTTTTCTAAAATAATAA
1 TTTTTTATAAAATAATAA
34502893 TTTT
1 TTTT
34502897 AGAGACATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.56
Consensus pattern (18 bp):
TTTTTTATAAAATAATAA
Found at i:34511372 original size:14 final size:15
Alignment explanation
Indices: 34511350--34511379 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
34511340 GAATATCAAG
34511350 ACATGAATTAAGAAC
1 ACATGAATTAAGAAC
34511365 ACAT-AATTAAGAAC
1 ACATGAATTAAGAAC
34511379 A
1 A
34511380 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.57, C:0.13, G:0.10, T:0.20
Consensus pattern (15 bp):
ACATGAATTAAGAAC
Found at i:34518446 original size:31 final size:31
Alignment explanation
Indices: 34518411--34518474 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
34518401 CCTTTTCATA
34518411 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
34518442 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
34518473 TT
1 TT
34518475 ACTGTAAACG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:34518719 original size:24 final size:24
Alignment explanation
Indices: 34518668--34518762 Score: 122
Period size: 24 Copynumber: 4.0 Consensus size: 24
34518658 GCTTTATCAT
* *
34518668 ATAACTGGAGGCCT-AGCCTCTTTGA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
34518693 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
34518717 ATAACTAGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
34518740 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
34518763 TCACTTCCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
23 22 0.35
24 28 0.45
25 12 0.19
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:34518743 original size:23 final size:23
Alignment explanation
Indices: 34518668--34518761 Score: 118
Period size: 23 Copynumber: 4.0 Consensus size: 23
34518658 GCTTTATCAT
*
34518668 ATAACTGGAGGCCT-AGCCTCTTTGA
1 ATAACTGG-GGCATAAGCC-CTTT-A
*
34518693 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCC-TTTA
*
34518717 ATAACTAGGGCATAAGCCCTTTA
1 ATAACTGGGGCATAAGCCCTTTA
34518740 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
34518762 TTCACTTCCT
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
23 25 0.40
24 22 0.35
25 15 0.24
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (23 bp):
ATAACTGGGGCATAAGCCCTTTA
Found at i:34518837 original size:20 final size:20
Alignment explanation
Indices: 34518812--34518878 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
34518802 TTATGATTAC
34518812 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
34518832 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
34518852 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
34518872 ACCATGT
1 ATCATGT
34518879 TTATCAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:34518843 original size:11 final size:11
Alignment explanation
Indices: 34518812--34518867 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
34518802 TTATGATTAC
34518812 ATCATGTGCAT
1 ATCATGTGCAT
*
34518823 ATCA--TACAT
1 ATCATGTGCAT
34518832 ATCATGTGCAT
1 ATCATGTGCAT
*
34518843 ATCA--TACAT
1 ATCATGTGCAT
*
34518852 GTCATGTGCAT
1 ATCATGTGCAT
34518863 ATCAT
1 ATCAT
34518868 ACATACCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.12, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:34518947 original size:25 final size:25
Alignment explanation
Indices: 34518915--34518962 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
34518905 ATACATAAAC
* * *
34518915 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
34518940 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
34518963 CATGTTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:34537806 original size:27 final size:28
Alignment explanation
Indices: 34537776--34537832 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
34537766 ATTTTTGGTG
34537776 AAATGAGCTATTTG-GG-CTAATTTGTGA
1 AAATGAGCT-TTTGAGGACTAATTTGTGA
*
34537803 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGCTTTTG-AGGACTAATTTGTGA
34537832 A
1 A
34537833 TTAAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.35
Consensus pattern (28 bp):
AAATGAGCTTTTGAGGACTAATTTGTGA
Found at i:34538312 original size:44 final size:43
Alignment explanation
Indices: 34538238--34538398 Score: 170
Period size: 42 Copynumber: 3.7 Consensus size: 43
34538228 GTTGGTATTA
* *
34538238 ATCTGAA-TTATCGTGTAAGACCGTGTCTGGGACACAAGCATCG
1 ATCTGAATTTA-CGTGTAAGACCATGTCTGGGACACAGGCATCG
*
34538281 ATTTGAAATTTACGTGTAAGACCATGTCTGGGACATC-GGCATCG
1 ATCTG-AATTTACGTGTAAGACCATGTCTGGGACA-CAGGCATCG
* * *
34538325 TATCT-AATTT-CGTATAAGACCTTGTCTGGGACAGAGGCATCG
1 -ATCTGAATTTACGTGTAAGACCATGTCTGGGACACAGGCATCG
* *
34538367 ATACTGAA-TTACATGTAAGACCACGTCTGGGA
1 AT-CTGAATTTACGTGTAAGACCATGTCTGGGA
34538399 TGTTGGCTTA
Statistics
Matches: 99, Mismatches: 11, Indels: 16
0.79 0.09 0.13
Matches are distributed among these distances:
41 2 0.02
42 32 0.32
43 28 0.28
44 30 0.30
45 7 0.07
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (43 bp):
ATCTGAATTTACGTGTAAGACCATGTCTGGGACACAGGCATCG
Found at i:34538356 original size:42 final size:41
Alignment explanation
Indices: 34538238--34538398 Score: 162
Period size: 44 Copynumber: 3.8 Consensus size: 41
34538228 GTTGGTATTA
* *
34538238 ATCTGAATTATCGTGTAAGACCGTGTCTGGGACACAAGCATCG
1 ATCTGAATT-TCGTGTAAGACCATGTCTGGGACAC-GGCATCG
*
34538281 ATTTGAAATTTACGTGTAAGACCATGTCTGGGACATCGGCATCG
1 ATCTG-AATTT-CGTGTAAGACCATGTCTGGGACA-CGGCATCG
* * *
34538325 TATCT-AATTTCGTATAAGACCTTGTCTGGGACAGAGGCATCG
1 -ATCTGAATTTCGTGTAAGACCATGTCTGGGACA-CGGCATCG
* * *
34538367 ATACTGAATTACATGTAAGACCACGTCTGGGA
1 AT-CTGAATTTCGTGTAAGACCATGTCTGGGA
34538399 TGTTGGCTTA
Statistics
Matches: 99, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
41 2 0.02
42 30 0.30
43 31 0.31
44 32 0.32
45 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (41 bp):
ATCTGAATTTCGTGTAAGACCATGTCTGGGACACGGCATCG
Found at i:34546587 original size:27 final size:26
Alignment explanation
Indices: 34546547--34546598 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
34546537 GCGAGGCTGC
*
34546547 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGACACCAGAA
*
34546573 CAGATATATGTGACGAGGACACCAGA
1 CAGATAT-TGTGACGAAGACACCAGA
34546599 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAGAA
Found at i:34549360 original size:30 final size:30
Alignment explanation
Indices: 34549326--34549386 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
34549316 TTAAGTCACG
34549326 ATACATTTTACTCCCTCCAGGATGCATAGC
1 ATACATTTTACTCCCTCCAGGATGCATAGC
*
34549356 ATACATTTTACTCCCTCTAGGATGCATAGC
1 ATACATTTTACTCCCTCCAGGATGCATAGC
34549386 A
1 A
34549387 CACAGACCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (30 bp):
ATACATTTTACTCCCTCCAGGATGCATAGC
Found at i:34550869 original size:47 final size:48
Alignment explanation
Indices: 34550770--34550870 Score: 116
Period size: 47 Copynumber: 2.1 Consensus size: 48
34550760 TGTGAGTATT
* * *
34550770 GAGATCCCGTATAAGACCATATCTAGGATATGGAAATGGCATCGAGAT
1 GAGATCCCATATAAGACCATATCTAGGATATGGAAATGACATCGAGAA
* * * *
34550818 GAGATCCCATCTAAGACCATAT-TGGGATATGG-CATCGACATCGATAA
1 GAGATCCCATATAAGACCATATCTAGGATATGGAAAT-GACATCGAGAA
34550865 GAGATC
1 GAGATC
34550871 TTGTATAAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
46 2 0.04
47 23 0.51
48 20 0.44
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (48 bp):
GAGATCCCATATAAGACCATATCTAGGATATGGAAATGACATCGAGAA
Found at i:34557488 original size:48 final size:48
Alignment explanation
Indices: 34557418--34557694 Score: 301
Period size: 48 Copynumber: 5.8 Consensus size: 48
34557408 TGTGAGTATT
* * * *
34557418 GAGAT-CCAGTATAAGATCATATCTGGGATATGGAATCAGCATCTA-AA
1 GAGATCCCA-TATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
* *
34557465 TGAGATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATAA
1 -GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
* *
34557514 GAGATCTCATATAAGACCATGTCTGGGATATGGCATCGGCATCGATAA
1 GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
* * * *
34557562 GAGATCCCATATAAGACCATGTCTGGGACATGGTATCGGCATC-AGTAT
1 GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGA-TAA
* * * * **
34557610 GAGATCCCATGTAAGACCATATATGGGATATGGCATTGGCATCAATGT
1 GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
* * *
34557658 GAGATCCCGTATAAGATCATGA-CTGGGACATGGCATC
1 GAGATCCCATATAAGACCAT-ATCTGGGATATGGCATC
34557695 TGAACCGTTA
Statistics
Matches: 197, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
47 1 0.01
48 189 0.96
49 7 0.04
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (48 bp):
GAGATCCCATATAAGACCATATCTGGGATATGGCATCGGCATCGATAA
Found at i:34557684 original size:144 final size:144
Alignment explanation
Indices: 34557418--34557694 Score: 387
Period size: 144 Copynumber: 1.9 Consensus size: 144
34557408 TGTGAGTATT
* *
34557418 GAGATCCAGTATAAGATCATATCTGGGATATGGAATCAGCATCTAAATGAGATCCCATGTAAGAC
1 GAGATCCAGTATAAGACCATATCTGGGACATGGAATCAGCATCTAAATGAGATCCCATGTAAGAC
* * * * *
34557483 CATATCTGGGATATGGCATTGGCATCGATAAGAGATCTCATATAAGACCATGTCTGGGATATGGC
66 CATATATGGGATATGGCATTGGCATCAATAAGAGATCCCATATAAGACCATGACTGGGACATGGC
34557548 ATCGGCATCGATAA
131 ATCGGCATCGATAA
* * * *
34557562 GAGATCCCA-TATAAGACCATGTCTGGGACATGGTATCGGCATC-AGTATGAGATCCCATGTAAG
1 GAGAT-CCAGTATAAGACCATATCTGGGACATGGAATCAGCATCTA-AATGAGATCCCATGTAAG
** * *
34557625 ACCATATATGGGATATGGCATTGGCATCAATGTGAGATCCCGTATAAGATCATGACTGGGACATG
64 ACCATATATGGGATATGGCATTGGCATCAATAAGAGATCCCATATAAGACCATGACTGGGACATG
34557690 GCATC
129 GCATC
34557695 TGAACCGTTA
Statistics
Matches: 116, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
143 1 0.01
144 112 0.97
145 3 0.03
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (144 bp):
GAGATCCAGTATAAGACCATATCTGGGACATGGAATCAGCATCTAAATGAGATCCCATGTAAGAC
CATATATGGGATATGGCATTGGCATCAATAAGAGATCCCATATAAGACCATGACTGGGACATGGC
ATCGGCATCGATAA
Found at i:34562692 original size:43 final size:43
Alignment explanation
Indices: 34562652--34562752 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
34562642 TAGCCCAACT
34562652 ATGGTCTCACACGA-AATCAAATAACGATGCCAATGTCCCAAAC
1 ATGGTCTCACAC-ATAATCAAATAACGATGCCAATGTCCCAAAC
* * * * ***
34562695 ATGGTCTTACACATAATCACATAATGATTCCAATGTCCCGGGC
1 ATGGTCTCACACATAATCAAATAACGATGCCAATGTCCCAAAC
*
34562738 ATGGTCTTACACATA
1 ATGGTCTCACACATA
34562753 TTCACATCTC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 49 0.98
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.25
Consensus pattern (43 bp):
ATGGTCTCACACATAATCAAATAACGATGCCAATGTCCCAAAC
Found at i:34572910 original size:27 final size:27
Alignment explanation
Indices: 34572847--34572912 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
34572837 GCCCTAAAAT
* ** *
34572847 AGGTAAAATAACCATAATACCCCTGTA
1 AGGTAAAATGACTGTAATACACCTGTA
34572874 AGGTAAAATGACTGTAATACACCTGTA
1 AGGTAAAATGACTGTAATACACCTGTA
*
34572901 TGGTAAAATGAC
1 AGGTAAAATGAC
34572913 GATTTTGCCC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (27 bp):
AGGTAAAATGACTGTAATACACCTGTA
Found at i:34573342 original size:33 final size:33
Alignment explanation
Indices: 34573294--34573359 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
34573284 TTAGGTCTAC
* * *
34573294 ACTGTTACTGTATAGGGCTAAGGCCCAGACTGT
1 ACTGATACTGAATAGGGCTAAGACCCAGACTGT
* *
34573327 ACTGATACTGAATAGGGCTCAGACCTAGACTGT
1 ACTGATACTGAATAGGGCTAAGACCCAGACTGT
34573360 TACTCTATGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTAAGACCCAGACTGT
Found at i:34576147 original size:43 final size:43
Alignment explanation
Indices: 34576099--34576264 Score: 126
Period size: 43 Copynumber: 3.9 Consensus size: 43
34576089 TACTGAGATG
*
34576099 TGATTACATGTAAGACCATGTCTGGGACATTGGCATTGAATTT
1 TGATTACATGTAAGACCATATCTGGGACATTGGCATTGAATTT
* * * *
34576142 TGATTACGTGTAAGACCATGTCTAGGATATTGGTATCATT-AA--T
1 TGATTACATGTAAGACCATATCTGGGACATTGG---CATTGAATTT
* * * * * *
34576185 TGGTTACGTGTAAGACCCTATCTGGGACAGTGGCATCG-ATATG
1 TGATTACATGTAAGACCATATCTGGGACATTGGCATTGAAT-TT
* * * *
34576228 TGATAACATGTAGGACCATATATGGGATA-TGGCATTG
1 TGATTACATGTAAGACCATATCTGGGACATTGGCATTG
34576265 TACGAGCTAT
Statistics
Matches: 97, Mismatches: 19, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
40 4 0.04
42 7 0.07
43 80 0.82
45 2 0.02
46 4 0.04
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (43 bp):
TGATTACATGTAAGACCATATCTGGGACATTGGCATTGAATTT
Found at i:34585465 original size:23 final size:23
Alignment explanation
Indices: 34585436--34585489 Score: 108
Period size: 23 Copynumber: 2.3 Consensus size: 23
34585426 ATTATGTAGA
34585436 ACCAAAATACTTCAATTTAAAAT
1 ACCAAAATACTTCAATTTAAAAT
34585459 ACCAAAATACTTCAATTTAAAAT
1 ACCAAAATACTTCAATTTAAAAT
34585482 ACCAAAAT
1 ACCAAAAT
34585490 CGATAAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.28
Consensus pattern (23 bp):
ACCAAAATACTTCAATTTAAAAT
Found at i:34589376 original size:25 final size:26
Alignment explanation
Indices: 34589306--34589445 Score: 87
Period size: 25 Copynumber: 5.6 Consensus size: 26
34589296 CCAGATGACA
*
34589306 CACCACAAAGGCTTTCTAGA-GAGTT
1 CACCACAAAGGCTTTCTAAAGGAGTT
* * * *
34589331 TACCGCAAAGGCATTCCAAAGGA-TT
1 CACCACAAAGGCTTTCTAAAGGAGTT
*
34589356 CACCACAAAGACTTTCTAAA-GAGTT
1 CACCACAAAGGCTTTCTAAAGGAGTT
* * * **
34589381 CGCCAAAAAGGCCTTC-GGA-GAGTT
1 CACCACAAAGGCTTTCTAAAGGAGTT
* * *
34589405 CACCATAAAGGCTTT-TCGAA-CAGTT
1 CACCACAAAGGCTTTCT-AAAGGAGTT
*
34589430 CACCACAAAGACTTTC
1 CACCACAAAGGCTTTC
34589446 CTAAGAATCT
Statistics
Matches: 87, Mismatches: 23, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
24 20 0.23
25 65 0.75
26 2 0.02
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (26 bp):
CACCACAAAGGCTTTCTAAAGGAGTT
Found at i:34593436 original size:27 final size:27
Alignment explanation
Indices: 34593401--34593512 Score: 86
Period size: 27 Copynumber: 4.1 Consensus size: 27
34593391 AGCATGGCTG
* *
34593401 CCAGAACAGATAA-TGTGACAGAGTCG
1 CCAGAACAGATAACTGTGACAGAGACA
* **
34593427 CCAGATACAGATAACCGTGGTAGA-ACCA
1 CCAGA-ACAGATAACTGTGACAGAGA-CA
*
34593455 CCAGAACAGATATA-TGTGGCAGAGACA
1 CCAGAACAGATA-ACTGTGACAGAGACA
* * * *
34593482 CCAGATCAGATAATTGTGACATAGCCA
1 CCAGAACAGATAACTGTGACAGAGACA
34593509 CCAG
1 CCAG
34593513 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 11, Indels: 11
0.76 0.12 0.12
Matches are distributed among these distances:
26 6 0.09
27 49 0.71
28 14 0.20
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAACTGTGACAGAGACA
Found at i:34593510 original size:54 final size:54
Alignment explanation
Indices: 34593401--34593512 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 54
34593391 AGCATGGCTG
* * **
34593401 CCAGAACAGATAATGTGACAGAGTCGCCAGATACAGATAACCGTGGTAGAACCA
1 CCAGAACAGATAATGTGACAGAGACACCAGATACAGATAACCGTGACAGAACCA
* ** * *
34593455 CCAGAACAGATATATGTGGCAGAGACACCAGAT-CAGATAATTGTGACATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGACACCAGATACAGATAACCGTGACAGAACCA
34593509 CCAG
1 CCAG
34593513 GACGCTTCCT
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
54 31 0.65
55 17 0.35
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGACACCAGATACAGATAACCGTGACAGAACCA
Found at i:34594975 original size:24 final size:24
Alignment explanation
Indices: 34594943--34595015 Score: 119
Period size: 24 Copynumber: 3.0 Consensus size: 24
34594933 AAACAGTTCA
*
34594943 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCTTCT
*
34594967 CCCTGATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCTTCT
*
34594991 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCTTCT
34595015 C
1 C
34595016 TAGACAGACT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.22, C:0.40, G:0.05, T:0.33
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCTTCT
Found at i:34597254 original size:18 final size:18
Alignment explanation
Indices: 34597227--34597263 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
34597217 CTGTAATTTG
*
34597227 AATATTAATCTGAATCTA
1 AATATAAATCTGAATCTA
34597245 AATATAAATCTGAATCTA
1 AATATAAATCTGAATCTA
34597263 A
1 A
34597264 TTCTGTATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (18 bp):
AATATAAATCTGAATCTA
Found at i:34598646 original size:20 final size:20
Alignment explanation
Indices: 34598618--34598661 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
34598608 CCACACCAAA
*
34598618 GCACTGAAGTGCAAACAGTG
1 GCACCGAAGTGCAAACAGTG
* *
34598638 GCACCGAAGTGCGAATAGTG
1 GCACCGAAGTGCAAACAGTG
34598658 GCAC
1 GCAC
34598662 TAGAGTGCGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.23, G:0.32, T:0.14
Consensus pattern (20 bp):
GCACCGAAGTGCAAACAGTG
Found at i:34598763 original size:21 final size:22
Alignment explanation
Indices: 34598693--34598767 Score: 82
Period size: 22 Copynumber: 3.5 Consensus size: 22
34598683 GAAGTATGAA
* * *
34598693 CAGT-GGCACCAAATTGTGAAT
1 CAGTAGGCACCATAGTGCGAAT
* *
34598714 CAATAGGCACCATAGTTCGAAT
1 CAGTAGGCACCATAGTGCGAAT
*
34598736 CAGTAGGCATCATAGTGCGAAT
1 CAGTAGGCACCATAGTGCGAAT
34598758 -AGTAGGCACC
1 CAGTAGGCACC
34598768 GAAGTGAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
21 12 0.27
22 32 0.73
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (22 bp):
CAGTAGGCACCATAGTGCGAAT
Found at i:34601837 original size:49 final size:49
Alignment explanation
Indices: 34601657--34601901 Score: 274
Period size: 49 Copynumber: 4.9 Consensus size: 49
34601647 TCTATTGTGA
* * * * *
34601657 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-T
* * * **
34601708 GATCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
34601757 AGGTCACGTGTGTAGTACTAAGTGGACGCTACTACGTGTACCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
34601807 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACAAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
34601856 GGTCGCATGTGTAGTACTATGTGCAGGCTACGATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
34601902 GCTTTGGCTA
Statistics
Matches: 165, Mismatches: 28, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
49 85 0.52
50 43 0.26
51 37 0.22
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:34601845 original size:99 final size:101
Alignment explanation
Indices: 34601656--34601896 Score: 292
Period size: 99 Copynumber: 2.4 Consensus size: 101
34601646 ATCTATTGTG
* * *
34601656 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACGTGTGTA
1 AGGTCACATGTGTAGTACTAAGTGCACGCTACTACGCGTACCGGAAAACTGTGATCACGTGTGTA
*
34601721 GTACTAAGTGTAGGCTACTACGTGTATCAGATGGTT
66 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
* * * * *
34601757 AGGTCACGTGTGTAGTACTAAGTGGACGCTACTACGTGTACCGGATAA-T-TGGTCACGTGTGTA
1 AGGTCACATGTGTAGTACTAAGTGCACGCTACTACGCGTACCGGAAAACTGTGATCACGTGTGTA
* **
34601820 GTACTAAGTGCAGGCTACTATGTGTA-CAAGATAATT
66 GTACTAAGTGCAGGCTACTACGTGTATC-AGATGGTT
* * * * *
34601856 -GGTCGCATGTGTAGTACTATGTGCAGGCTACGATGCGTACC
1 AGGTCACATGTGTAGTACTAAGTGCACGCTACTACGCGTACC
34601897 AGATAGCTTT
Statistics
Matches: 119, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
98 34 0.29
99 43 0.36
100 1 0.01
101 41 0.34
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (101 bp):
AGGTCACATGTGTAGTACTAAGTGCACGCTACTACGCGTACCGGAAAACTGTGATCACGTGTGTA
GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:34603793 original size:25 final size:25
Alignment explanation
Indices: 34603765--34603834 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
34603755 CTCTTTTAAT
*
34603765 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
34603790 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
34603815 AACTAGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
34603835 AGCACTTCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:34604117 original size:27 final size:27
Alignment explanation
Indices: 34604087--34604371 Score: 358
Period size: 27 Copynumber: 10.6 Consensus size: 27
34604077 CCTACAAGGT
* * *
34604087 TATTTTAGTAATTTCACAAATCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* **
34604114 TATTTTGGTAATTTTATAAAGTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* *
34604141 TATTTTGGTAATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
34604168 TATTTTGGTACA-TTTACAAACCAAGGG
1 TATTTTGGTA-ATTTTACAAACCAGGGG
* *
34604195 TATTTTGGTAATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
34604222 TATTTTGGTAATTTTACAAACTAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
* *
34604249 TATTTTGGTAATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
34604276 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*
34604303 TATTTTAGTAATTTTACAAACCAGGGG
1 TATTTTGGTAATTTTACAAACCAGGGG
*** *
34604330 TATTTTGGTAATTTTATTGATC-GAGGG
1 TATTTTGGTAATTTTACAAACCAG-GGG
34604357 TATTTTGGTAATTTT
1 TATTTTGGTAATTTT
34604372 GTAAATCGAG
Statistics
Matches: 231, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
26 2 0.01
27 228 0.99
28 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
TATTTTGGTAATTTTACAAACCAGGGG
Found at i:34604172 original size:81 final size:81
Alignment explanation
Indices: 34604081--34604398 Score: 379
Period size: 81 Copynumber: 3.9 Consensus size: 81
34604071 TTCTACCCTA
* * * * * **
34604081 CAAGGTTATTTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTATAAAGTAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTT
* *
34604146 TGGTAATTTTATAAAC
66 TAGTAATTTTACAAAC
*
34604162 CAAGGGTATTTTGGTACA-TTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAAGGGTATT
1 CAAGGGTATTTTGGTA-ATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATT
*
34604226 TTGGTAATTTTACAAAC
65 TTAGTAATTTTACAAAC
* * * * *
34604243 TAGGGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTT
34604308 TAGTAATTTTACAAAC
66 TAGTAATTTTACAAAC
* *** * * * *
34604324 CAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAATC-GAGGGTATT
1 CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAG-GGGTATT
*
34604388 TCAGTAATTTT
65 TTAGTAATTTT
34604399 GTAAATCGAG
Statistics
Matches: 208, Mismatches: 26, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
80 2 0.01
81 205 0.99
82 1 0.00
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTATAAACCAGGGGTATTT
TAGTAATTTTACAAAC
Found at i:34604379 original size:27 final size:27
Alignment explanation
Indices: 34604087--34604750 Score: 332
Period size: 27 Copynumber: 24.6 Consensus size: 27
34604077 CCTACAAGGT
* * *
34604087 TATTTTAGTAATTTCACAAATC-AGGGG
1 TATTTTGGTAATTTTATAAATCGA-GGG
*
34604114 TATTTTGGTAATTTTATAAAGTAG-GGG
1 TATTTTGGTAATTTTATAAA-TCGAGGG
* *
34604141 TATTTTGGTAATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
* * *
34604168 TATTTTGGTACA-TTTACAAACCAAGGG
1 TATTTTGGTA-ATTTTATAAATCGAGGG
* *
34604195 TATTTTGGTAATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
* *
34604222 TATTTTGGTAATTTTACAAA-CTAGGGG
1 TATTTTGGTAATTTTATAAATCGA-GGG
* *
34604249 TATTTTGGTAATTTTATAAACCAAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
* * *
34604276 TATTTTAGTAATTTTACAAA-CCAGGGG
1 TATTTTGGTAATTTTATAAATCGA-GGG
* * *
34604303 TATTTTAGTAATTTTACAAA-CCAGGGG
1 TATTTTGGTAATTTTATAAATCGA-GGG
**
34604330 TATTTTGGTAATTTTATTGATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
*
34604357 TATTTTGGTAATTTTGTAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
** *
34604384 TATTTCAGTAATTTTGTAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
*** * * *
34604411 TAAAATAGTAATTCTGTAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
**** * * * *
34604438 TAAAACGGTAATTCTGTAAGTCGATGG
1 TATTTTGGTAATTTTATAAATCGAGGG
*** * *
34604465 TAAAATGATAATTCTATAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
***** * *
34604492 TAAAACAGTAATTCTGTAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
**** * * * *
34604519 TAAAACGGTAATTCTGTAAGTCGATGG
1 TATTTTGGTAATTTTATAAATCGAGGG
*** * *
34604546 TAAAATGATAATTCTATAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
**** *
34604573 TAAAACGGTAATTCTATAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
*** * * *
34604600 TAAAATAGTAATTCTATAAATTGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
*** * * *
34604627 TAAAATGGTAATTCTATAAACCGATGG
1 TATTTTGGTAATTTTATAAATCGAGGG
*** *
34604654 TAAAATGGTAATTCTATAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
*** * * *
34604681 TAAAATGGAAATTCTGTAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
**** * *
34604708 TAAAACGGTAAATCTATAAATCGAGGG
1 TATTTTGGTAATTTTATAAATCGAGGG
*
34604735 TACTTTGGTAATTTTA
1 TATTTTGGTAATTTTA
34604751 CAATTTGAGG
Statistics
Matches: 553, Mismatches: 75, Indels: 18
0.86 0.12 0.03
Matches are distributed among these distances:
26 5 0.01
27 542 0.98
28 6 0.01
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
TATTTTGGTAATTTTATAAATCGAGGG
Found at i:34604422 original size:54 final size:54
Alignment explanation
Indices: 34604362--34604736 Score: 432
Period size: 54 Copynumber: 6.9 Consensus size: 54
34604352 GAGGGTATTT
* ** * *
34604362 TGGTAATTTTGTAAATCGAGGGTATTTCAGTAATTTTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAATCAGTAATTCTATAAATCGAGGGTAAAA
* * * * * *
34604416 TAGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTGTAAGTCGATGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAATCAGTAATTCTATAAATCGAGGGTAAAA
* * * *
34604470 TGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGTAAATCAGTAATTCTATAAATCGAGGGTAAAA
* * * *
34604524 CGGTAATTCTGTAAGTCGATGGTAAAATGA-TAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGT-AAATCAGTAATTCTATAAATCGAGGGTAAAA
* * *
34604578 CGGTAATTCTATAAATCGAGGGTAAAAT-AGTAATTCTATAAATTGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGT-AAATCAGTAATTCTATAAATCGAGGGTAAAA
* * * *
34604632 TGGTAATTCTATAAACCGATGGTAAAAT-GGTAATTCTATAAATCGAGGGTAAAA
1 TGGTAATTCTGTAAATCGAGGGT-AAATCAGTAATTCTATAAATCGAGGGTAAAA
* * * *
34604686 TGGAAATTCTGTAAATCGAGGGTAAAACGGTAAATCTATAAATCGAGGGTA
1 TGGTAATTCTGTAAATCGAGGGTAAATCAGTAATTCTATAAATCGAGGGTA
34604737 CTTTGGTAAT
Statistics
Matches: 280, Mismatches: 38, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
53 4 0.01
54 272 0.97
55 4 0.01
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (54 bp):
TGGTAATTCTGTAAATCGAGGGTAAATCAGTAATTCTATAAATCGAGGGTAAAA
Found at i:34604434 original size:81 final size:81
Alignment explanation
Indices: 34604362--34604736 Score: 482
Period size: 81 Copynumber: 4.6 Consensus size: 81
34604352 GAGGGTATTT
* ** * * * *
34604362 TGGTAATTTTGTAAATCGAGGGT-ATTTCAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCT
1 TGGTAATTCTGTAAATCGAGGGTAAAATGA-TAATTCTATAAATCGAGGGTAAAACAGTAATTCT
*
34604426 GTAAATCGAGGGTAAAA
65 ATAAATCGAGGGTAAAA
* * * *
34604443 CGGTAATTCTGTAAGTCGATGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTG
1 TGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTA
34604508 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * *
34604524 CGGTAATTCTGTAAGTCGATGGTAAAATGATAATTCTATAAATCGAGGGTAAAACGGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTA
34604589 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * * * * **
34604605 TAGTAATTCTATAAATTGAGGGTAAAATGGTAATTCTATAAACCGATGGTAAAATGGTAATTCTA
1 TGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTA
34604670 TAAATCGAGGGTAAAA
66 TAAATCGAGGGTAAAA
* * * *
34604686 TGGAAATTCTGTAAATCGAGGGTAAAACGGTAAATCTATAAATCGAGGGTA
1 TGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTA
34604737 CTTTGGTAAT
Statistics
Matches: 263, Mismatches: 30, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
81 260 0.99
82 3 0.01
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (81 bp):
TGGTAATTCTGTAAATCGAGGGTAAAATGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTA
TAAATCGAGGGTAAAA
Found at i:34605061 original size:26 final size:26
Alignment explanation
Indices: 34605032--34605137 Score: 176
Period size: 26 Copynumber: 4.1 Consensus size: 26
34605022 TGATACAAAT
34605032 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
34605058 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
34605084 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
34605110 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
34605136 TG
1 TG
34605138 GTGGGCATTT
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:34610384 original size:15 final size:15
Alignment explanation
Indices: 34610364--34610428 Score: 64
Period size: 15 Copynumber: 4.4 Consensus size: 15
34610354 GTATCTTGGG
34610364 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
34610379 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
34610394 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
* *
34610409 TTTTTTTATT-TGGT
1 TTTCTTTATTCTGGA
34610423 TTTCTT
1 TTTCTT
34610429 GTTATCTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
14 12 0.29
15 27 0.64
16 3 0.07
ACGTcount: A:0.09, C:0.11, G:0.14, T:0.66
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:34610396 original size:30 final size:30
Alignment explanation
Indices: 34610359--34610428 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
34610349 GTATCGTATC
34610359 TTGGGTTTCTT-TAT-TCTGGATTTCTTTAT
1 TTGGGTTTCTTCTATCT-TGGATTTCTTTAT
*
34610388 TCTGGGTTT-TTCTATCTTGGATTTTTTTAT
1 T-TGGGTTTCTTCTATCTTGGATTTCTTTAT
*
34610418 TTGGTTTTCTT
1 TTGGGTTTCTT
34610429 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
29 9 0.26
30 25 0.71
31 1 0.03
ACGTcount: A:0.09, C:0.10, G:0.17, T:0.64
Consensus pattern (30 bp):
TTGGGTTTCTTCTATCTTGGATTTCTTTAT
Found at i:34612715 original size:49 final size:49
Alignment explanation
Indices: 34612549--34612786 Score: 314
Period size: 49 Copynumber: 4.8 Consensus size: 49
34612539 TGAGGTCGCA
* * *
34612549 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAATTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTG-G-TCACG
* * **
34612600 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACG
*
34612650 TGTGTAGTACTAAGTGCAGACTACTATGTGTACCAGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* * * *
34612699 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* * *
34612748 TGTGTAGTACTATGTGCAGGCTACTATGCGTACTAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
34612787 GCTTTGGCTA
Statistics
Matches: 164, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 85 0.52
50 42 0.26
51 36 0.22
52 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
Found at i:34615839 original size:49 final size:49
Alignment explanation
Indices: 34615763--34615869 Score: 153
Period size: 49 Copynumber: 2.2 Consensus size: 49
34615753 CTGTGTCACA
*
34615763 AGCCGTGTGCCTGATCGCGTGAACCTGCACTAAAATTTACAAGACACGC
1 AGCCGTGTGCCTAATCGCGTGAACCTGCACTAAAATTTACAAGACACGC
* * *
34615812 AGCCGTGTGCCTAA-CTGTGTGATCCTGCACTAAAATTTGCAAGACACGC
1 AGCCGTGTGCCTAATC-GCGTGAACCTGCACTAAAATTTACAAGACACGC
*
34615861 GGCCGTGTG
1 AGCCGTGTG
34615870 ATAGACCGTG
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
48 1 0.02
49 51 0.98
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.22
Consensus pattern (49 bp):
AGCCGTGTGCCTAATCGCGTGAACCTGCACTAAAATTTACAAGACACGC
Found at i:34628925 original size:20 final size:20
Alignment explanation
Indices: 34628846--34628994 Score: 75
Period size: 20 Copynumber: 7.3 Consensus size: 20
34628836 TACACCACAC
* *
34628846 CAGGGGCACCAAAGATGCATAA
1 CAGGGGCACCGAAG-TGCA-AT
* * *
34628868 CAAGGGCACCAAAGTGAAAT
1 CAGGGGCACCGAAGTGCAAT
* * *
34628888 CAGGAGCA-TGAATATGCAAT
1 CAGGGGCACCGAA-GTGCAAT
*
34628908 CAGGGGCACCGAAGTGCAAA
1 CAGGGGCACCGAAGTGCAAT
* * * *
34628928 CAAGGGCACAGATGTGCATT
1 CAGGGGCACCGAAGTGCAAT
* * * *
34628948 CAGGGGTACCGAACTACAAC
1 CAGGGGCACCGAAGTGCAAT
** * *
34628968 CAGGGGCATAGATGTGCATT
1 CAGGGGCACCGAAGTGCAAT
34628988 CAGGGGC
1 CAGGGGC
34628995 GTCAAGTGCA
Statistics
Matches: 91, Mismatches: 34, Indels: 6
0.69 0.26 0.05
Matches are distributed among these distances:
19 2 0.02
20 70 0.77
21 6 0.07
22 13 0.14
ACGTcount: A:0.35, C:0.21, G:0.30, T:0.13
Consensus pattern (20 bp):
CAGGGGCACCGAAGTGCAAT
Found at i:34628951 original size:40 final size:40
Alignment explanation
Indices: 34628902--34629260 Score: 416
Period size: 40 Copynumber: 9.0 Consensus size: 40
34628892 AGCATGAATA
* * * *
34628902 TGCAATCAGGGGCACCGAAGTGCAAACAAGGGCACAGATG
1 TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
* * *
34628942 TGCATTCAGGGGTACCGAACTACAACCAGGGGCATAGATG
1 TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
*** * *
34628982 TGCATTCAGGGGCGTC-AAGTGCAAATA-GGGCACAGATG
1 TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
* * * * *
34629020 TGCATTCTGGGGTACCAAAGTACAAAAAGGGGAACAAATG
1 TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
* * *
34629060 TGCATTCAAGGGTACCGAAGTCCAAACAGGGGCATAGATG
1 TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
* *
34629100 TGCATTCAGGGGTACTGAAGTACAAATAGGGGCACAGATG
1 TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
* * * *
34629140 TGCATTCTGGGGTACCAAAGTACAAAAAGGGGAACAGATG
1 TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
* * *
34629180 TGCATTCAAGGGTACCGAAGTCCAAACAGGGGCATAGATG
1 TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
** *
34629220 TGCATTCAGGGGTACTAAAGTACAAATAGGGGCACAGATG
1 TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
34629260 T
1 T
34629261 ACAAACAGGG
Statistics
Matches: 263, Mismatches: 54, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
38 22 0.08
39 16 0.06
40 225 0.86
ACGTcount: A:0.34, C:0.18, G:0.31, T:0.18
Consensus pattern (40 bp):
TGCATTCAGGGGTACCGAAGTACAAACAGGGGCACAGATG
Found at i:34629175 original size:120 final size:120
Alignment explanation
Indices: 34628939--34629260 Score: 542
Period size: 120 Copynumber: 2.7 Consensus size: 120
34628929 AAGGGCACAG
* * * * *
34628939 ATGTGCATTCAGGGGTACCGAACTACAACCAGGGGCATAGATGTGCATTCAGGGG--CGTCAAGT
1 ATGTGCATTCAAGGGTACCGAAGTCCAAACAGGGGCATAGATGTGCATTCAGGGGTAC-TAAAGT
*
34629002 GCAAATA-GGGCACAGATGTGCATTCTGGGGTACCAAAGTACAAAAAGGGGAACAA
65 ACAAATAGGGGCACAGATGTGCATTCTGGGGTACCAAAGTACAAAAAGGGGAACAA
*
34629057 ATGTGCATTCAAGGGTACCGAAGTCCAAACAGGGGCATAGATGTGCATTCAGGGGTACTGAAGTA
1 ATGTGCATTCAAGGGTACCGAAGTCCAAACAGGGGCATAGATGTGCATTCAGGGGTACTAAAGTA
*
34629122 CAAATAGGGGCACAGATGTGCATTCTGGGGTACCAAAGTACAAAAAGGGGAACAG
66 CAAATAGGGGCACAGATGTGCATTCTGGGGTACCAAAGTACAAAAAGGGGAACAA
34629177 ATGTGCATTCAAGGGTACCGAAGTCCAAACAGGGGCATAGATGTGCATTCAGGGGTACTAAAGTA
1 ATGTGCATTCAAGGGTACCGAAGTCCAAACAGGGGCATAGATGTGCATTCAGGGGTACTAAAGTA
34629242 CAAATAGGGGCACAGATGT
66 CAAATAGGGGCACAGATGT
34629261 ACAAACAGGG
Statistics
Matches: 193, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
118 51 0.26
119 11 0.06
120 131 0.68
ACGTcount: A:0.34, C:0.17, G:0.30, T:0.19
Consensus pattern (120 bp):
ATGTGCATTCAAGGGTACCGAAGTCCAAACAGGGGCATAGATGTGCATTCAGGGGTACTAAAGTA
CAAATAGGGGCACAGATGTGCATTCTGGGGTACCAAAGTACAAAAAGGGGAACAA
Found at i:34631645 original size:45 final size:44
Alignment explanation
Indices: 34631582--34631671 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 44
34631572 TAAAGCATCA
34631582 TAGGAAAAAACAAATTCTTTCTCGAATTTATATTGAGTCAACAT
1 TAGGAAAAAACAAATTCTTTCTCGAATTTATATTGAGTCAACAT
34631626 TAGGAAAAAAACAAATTCTTTCTCGAATTTATATTGAGTCAACAT
1 TAGG-AAAAAACAAATTCTTTCTCGAATTTATATTGAGTCAACAT
34631671 T
1 T
34631672 TGGGCTTCTG
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 4 0.09
45 41 0.91
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.34
Consensus pattern (44 bp):
TAGGAAAAAACAAATTCTTTCTCGAATTTATATTGAGTCAACAT
Found at i:34639034 original size:27 final size:26
Alignment explanation
Indices: 34638994--34639098 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 26
34638984 AGGAAGCGTC
*
34638994 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
34639021 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
34639048 CTGGTGGTTCTGCCACGATTATTTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
34639076 CTAGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
34639099 ATTCTGGCAG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
26 2 0.03
27 48 0.74
28 15 0.23
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:34639098 original size:54 final size:54
Alignment explanation
Indices: 34638994--34639105 Score: 136
Period size: 54 Copynumber: 2.1 Consensus size: 54
34638984 AGGAAGCGTC
* * *
34638994 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTATT
* * * * *
34639048 CTGGTGGTTCTGCCACGATTATTTGTATCTAGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTATT
34639102 CTGG
1 CTGG
34639106 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
54 32 0.65
55 17 0.35
ACGTcount: A:0.18, C:0.22, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTATT
Found at i:34645365 original size:24 final size:24
Alignment explanation
Indices: 34645332--34645405 Score: 130
Period size: 24 Copynumber: 3.1 Consensus size: 24
34645322 AAGTCTGTCT
* *
34645332 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATTAG
34645356 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATTAG
34645380 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATTAG
34645404 GG
1 GG
34645406 TGAACTGTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.31, C:0.04, G:0.42, T:0.23
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATTAG
Found at i:34645401 original size:12 final size:12
Alignment explanation
Indices: 34645338--34645401 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 12
34645328 GTCTGGAGAA
34645338 GATTTAGGAGCT
1 GATTTAGGAGCT
* **
34645350 GA-TAAGGGAGAG
1 GATTTA-GGAGCT
34645362 GATTTAGGAGCT
1 GATTTAGGAGCT
**
34645374 GA-TTAGGGAGAG
1 GATTTA-GGAGCT
34645386 GATTTAGGAGCT
1 GATTTAGGAGCT
34645398 GATT
1 GATT
34645402 AGGGTGAACT
Statistics
Matches: 38, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
11 5 0.13
12 28 0.74
13 5 0.13
ACGTcount: A:0.30, C:0.05, G:0.39, T:0.27
Consensus pattern (12 bp):
GATTTAGGAGCT
Found at i:34646876 original size:27 final size:26
Alignment explanation
Indices: 34646836--34646941 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 26
34646826 AGGAAGCGTC
*
34646836 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
34646863 CTGGTGGCTCTGCCATATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
34646890 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
34646918 CTAGTGACTCTGTCACATTATCTG
1 CTGGTGGCTCTGCCACATTATCTG
34646942 TTCTAGCAGC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
26 2 0.03
27 49 0.74
28 15 0.23
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:34646940 original size:54 final size:54
Alignment explanation
Indices: 34646836--34646945 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
34646826 AGGAAGCGTC
* * *
34646836 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCATATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
* * * *
34646890 CTGGTGGTTCTGCCACGATTATCTGTATCTAGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTAGTGACTCTGCCACATATATCTGTT
34646944 CT
1 CT
34646946 AGCAGCCATG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 32 0.67
55 16 0.33
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.39
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGACTCTGCCACATATATCTGTT
Found at i:34649707 original size:21 final size:21
Alignment explanation
Indices: 34649640--34649709 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 21
34649630 CTACACACAC
34649640 CAAAT-AGT-GGCACTGAAGTG
1 CAAATCAGTAGGCAC-GAAGTG
* *
34649660 CGAATCAGTAGGCACCATAGTG
1 CAAATCAGTAGGCACGA-AGTG
*
34649682 TAAATCAGTAGGCACGAAGTG
1 CAAATCAGTAGGCACGAAGTG
34649703 CAAATCA
1 CAAATCA
34649710 CATACGAGTA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
20 4 0.10
21 14 0.34
22 23 0.56
ACGTcount: A:0.37, C:0.19, G:0.26, T:0.19
Consensus pattern (21 bp):
CAAATCAGTAGGCACGAAGTG
Found at i:34650364 original size:13 final size:14
Alignment explanation
Indices: 34650346--34650379 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
34650336 ACAGGGACAT
34650346 GCCCGTGTCCT-CA
1 GCCCGTGTCCTCCA
34650359 GCCCGTGTCCTCCA
1 GCCCGTGTCCTCCA
34650373 -CCCGTGT
1 GCCCGTGT
34650380 GGAATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 18 0.90
14 2 0.10
ACGTcount: A:0.06, C:0.47, G:0.24, T:0.24
Consensus pattern (14 bp):
GCCCGTGTCCTCCA
Found at i:34650492 original size:40 final size:41
Alignment explanation
Indices: 34650413--34650492 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 41
34650403 TACAGGGGTT
* *
34650413 TTCACACGGCATGACACATGCCAGTGTCCCTGGCCCGTGTCC
1 TTCACACGCCATGACACA-GCCAGTGTCCCTAGCCCGTGTCC
*
34650455 TTCACACGACCATGACAC-GCCTGTGT-CCTAGCCCGTGT
1 TTCACACG-CCATGACACAGCCAGTGTCCCTAGCCCGTGT
34650493 GTAAAAACCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
40 11 0.32
41 7 0.21
42 8 0.24
43 8 0.24
ACGTcount: A:0.17, C:0.38, G:0.23, T:0.23
Consensus pattern (41 bp):
TTCACACGCCATGACACAGCCAGTGTCCCTAGCCCGTGTCC
Found at i:34651581 original size:48 final size:46
Alignment explanation
Indices: 34651498--34651623 Score: 159
Period size: 47 Copynumber: 2.7 Consensus size: 46
34651488 CTCGTAGTCA
* *
34651498 ATGCATGTCCCAGACATGTCTTACACTAGCGCTCAT-TTCAAT-GCCG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAAT--ATGGCCG
*
34651544 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATATGGCCG
1 ATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATATGGCCG
34651592 ATGCATGTCCCA-AGCATGTCTTACACTAGCTC
1 ATGCATGTCCCAGA-CATGTCTTACACTAGCTC
34651624 ACAATAACCC
Statistics
Matches: 71, Mismatches: 4, Indels: 10
0.84 0.05 0.12
Matches are distributed among these distances:
46 18 0.25
47 28 0.39
48 24 0.34
49 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCATAATATGGCCG
Found at i:34663115 original size:26 final size:26
Alignment explanation
Indices: 34663084--34663191 Score: 155
Period size: 26 Copynumber: 4.2 Consensus size: 26
34663074 TGAAATGCCC
*
34663084 ATCATGAAACATTTACCTAAACCATT
1 ATCATGAAACATTTACCTAACCCATT
34663110 ATCATGGAAA-ATTTACCTAACCCATT
1 ATCAT-GAAACATTTACCTAACCCATT
* * *
34663136 ATCATGGAATATTTACCTAATCCATT
1 ATCATGAAACATTTACCTAACCCATT
*
34663162 ATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAACCCATT
34663188 ATCA
1 ATCA
34663192 ATTTGTACCA
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
25 3 0.04
26 68 0.91
27 4 0.05
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGAAACATTTACCTAACCCATT
Found at i:34663161 original size:52 final size:52
Alignment explanation
Indices: 34663084--34663191 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
34663074 TGAAATGCCC
34663084 ATCATGAAACATTTACCTAAACCATTATCATGGAAAATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATTATCATGGAAAATTTACCTAACCCATT
* * * *
34663136 ATCATGGAATATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATT
1 ATCATGAAACATTTACCTAAACCATTATCATGGAAAATTTACCTAACCCATT
34663188 ATCA
1 ATCA
34663192 ATTTGTACCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (52 bp):
ATCATGAAACATTTACCTAAACCATTATCATGGAAAATTTACCTAACCCATT
Found at i:34663683 original size:43 final size:43
Alignment explanation
Indices: 34663630--34663800 Score: 261
Period size: 43 Copynumber: 4.0 Consensus size: 43
34663620 AAAAAATCCC
* * *
34663630 GCTATAGAACATGAACTTTAGCGGCGCTTTCCCCACAAACACT
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCT
34663673 GCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCT
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCT
* * *
34663716 GCGAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAATCGCC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCT
* * *
34663759 GCTAAAGAACATGACCTTTAGCAGCGCTTTTCCCAAAAACGC
1 GCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGC
34663801 CACTAAATGT
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 117 1.00
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (43 bp):
GCTAAAGAACATGACCTTTAGCGGCGCTTTCCCCACAAACGCT
Found at i:34664471 original size:23 final size:23
Alignment explanation
Indices: 34664426--34665084 Score: 411
Period size: 23 Copynumber: 28.8 Consensus size: 23
34664416 ACATAAACTA
*
34664426 AATTT-CAGCAAC-TAAACAATTC
1 AATTTGCAGC-ACTTAAACACTTC
* *
34664448 AATTTGCAGTACTTAAAAACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
34664471 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
34664494 AATTTGCAGCACTTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
34664517 AATTTGCAGCACTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * * * *
34664540 AATTAACAACATTTATACTCCTC
1 AATTTGCAGCACTTAAACACTTC
* *
34664563 AA-TTACAGCGA-TAAAACA-TCTC
1 AATTTGCAGC-ACTTAAACACT-TC
*
34664585 AATTTCCAGCAAC-TAAACACTTC
1 AATTTGCAGC-ACTTAAACACTTC
* *
34664608 AATTTGCAGTACTTAAACAATTC
1 AATTTGCAGCACTTAAACACTTC
* *
34664631 AATTTGCAGTACTTAAAAACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
34664654 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
34664677 AATTTGCAGCACTTTAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
34664700 AATTTGCAGCATTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * * * *
34664723 AATTAACAACATTTATACTCCTC
1 AATTTGCAGCACTTAAACACTTC
* *
34664746 AA-TTACAGCGA-TAAAACA-TCTC
1 AATTTGCAGC-ACTTAAACACT-TC
*
34664768 AATTTCCAGCAAC-TAAACACTTC
1 AATTTGCAGC-ACTTAAACACTTC
* *
34664791 AATTTGTAGTACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
34664814 AATTTACAACATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * *
34664837 AATTTACAACA-TTCAGACACTTC
1 AATTTGCAGCACTT-AAACACTTC
**
34664860 AATTTGCAATACTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* * * *
34664883 AATTTACTA-CATTTAAGCACTTT
1 AATTTGC-AGCACTTAAACACTTC
* *
34664906 AATTTACAGCATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
*
34664929 AATTTGCAGCACTTTAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
** * * *
34664952 AATTAACAACATTTATACACATT-
1 AATTTGCAGCACTTAAACAC-TTC
* * *
34664975 AA-TTACAGCAATAAAACA-TCTC
1 AATTTGCAGCACTTAAACACT-TC
*
34664997 AATTTCCAGCAAC-TAAACACTTC
1 AATTTGCAGC-ACTTAAACACTTC
* * *
34665020 AATTTTCAGTATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
34665043 AATTTACAGCATTTAAACACTTC
1 AATTTGCAGCACTTAAACACTTC
* *
34665066 AATTTACAGCATTTAAACA
1 AATTTGCAGCACTTAAACA
34665085 GCAGCAACCA
Statistics
Matches: 505, Mismatches: 101, Indels: 61
0.76 0.15 0.09
Matches are distributed among these distances:
20 1 0.00
21 1 0.00
22 57 0.11
23 437 0.87
24 8 0.02
25 1 0.00
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.33
Consensus pattern (23 bp):
AATTTGCAGCACTTAAACACTTC
Found at i:34664695 original size:160 final size:160
Alignment explanation
Indices: 34664426--34664863 Score: 477
Period size: 160 Copynumber: 2.7 Consensus size: 160
34664416 ACATAAACTA
* * ** *
34664426 AATTTCAGCAACTAAACAATTCAATTTGCAGTACTTAAA-AACTTCAATTTACAACATTTAAACA
1 AATTTCAGCAACTAAACACTTCAATTTGCAGTACTTAAACAA-TTCAATTTGCAGTACTTAAACA
* *
34664490 CTTCAATTTGCAGCACTTT-AACACTTCAATTTGCAGCACTTTAACA-TCTCAATTAACAACA-T
65 CTTCAATTTACAACA-TTTAAACACTTCAATTTGCAGCACTTTAACACT-TCAATTAACAACATT
*
34664552 TTATAC-TCCTCAATT-ACAGCGA-TAAAACAT-CTC
128 TTA-ACAT-CTCAATTAACAAC-ATTAAAAC-TCCTC
*
34664585 AATTTCCAGCAACTAAACACTTCAATTTGCAGTACTTAAACAATTCAATTTGCAGTACTTAAAAA
1 AATTT-CAGCAACTAAACACTTCAATTTGCAGTACTTAAACAATTCAATTTGCAGTACTTAAACA
** *
34664650 CTTCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTTGCAGCATTTT
65 CTTCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTAACAACATTTT
* *
34664715 AACATCTCAATTAACAACATTTATACTCCTC
130 AACATCTCAATTAACAACATTAAAACTCCTC
* * * * * *
34664746 AATTACAGCGA-TAAA-ACATCTCAATTTCCAGCAAC-TAAACACTTCAATTTGTAGTACTTAAA
1 AATTTCAGCAACTAAACAC-T-TCAATTTGCAG-TACTTAAACAATTCAATTTGCAGTACTTAAA
* * *
34664808 CACTTCAATTTACAACATTTAAACACTTCAATTTACAACA-TTCAGACACTTCAATT
63 CACTTCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTA-ACACTTCAATT
34664864 TGCAATACTT
Statistics
Matches: 242, Mismatches: 24, Indels: 25
0.83 0.08 0.09
Matches are distributed among these distances:
158 2 0.01
159 16 0.07
160 199 0.82
161 25 0.10
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.33
Consensus pattern (160 bp):
AATTTCAGCAACTAAACACTTCAATTTGCAGTACTTAAACAATTCAATTTGCAGTACTTAAACAC
TTCAATTTACAACATTTAAACACTTCAATTTGCAGCACTTTAACACTTCAATTAACAACATTTTA
ACATCTCAATTAACAACATTAAAACTCCTC
Found at i:34664746 original size:183 final size:183
Alignment explanation
Indices: 34664438--34664887 Score: 783
Period size: 183 Copynumber: 2.5 Consensus size: 183
34664428 TTTCAGCAAC
34664438 TAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
1 TAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
34664503 CACTTTAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACTCCTCAATTA
66 CACTTTAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACTCCTCAATTA
34664568 CAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACT
131 CAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACT
34664621 TAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
1 TAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
*
34664686 CACTTTAACACTTCAATTTGCAGCATTTTAACATCTCAATTAACAACATTTATACTCCTCAATTA
66 CACTTTAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACTCCTCAATTA
*
34664751 CAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGTAGTACT
131 CAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACT
* * ** * * * * *
34664804 TAAACACTTCAATTTACAACATTTAAACACTTCAATTTACAACATTCAGACACTTCAATTTGCAA
1 TAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
* *
34664869 TACTTAAACACTTCAATTT
66 CACTTTAACACTTCAATTT
34664888 ACTACATTTA
Statistics
Matches: 254, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 254 1.00
ACGTcount: A:0.39, C:0.23, G:0.05, T:0.33
Consensus pattern (183 bp):
TAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACAACATTTAAACACTTCAATTTGCAG
CACTTTAACACTTCAATTTGCAGCACTTTAACATCTCAATTAACAACATTTATACTCCTCAATTA
CAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGCAGTACT
Found at i:34664875 original size:229 final size:228
Alignment explanation
Indices: 34664598--34665084 Score: 746
Period size: 229 Copynumber: 2.1 Consensus size: 228
34664588 TTCCAGCAAC
* *
34664598 TAAACACTTCAATTTGCAGTAC-TTAAACAATTCAATTTGCAGTACTTAAAAACTTCAATTTACA
1 TAAACACTTCAATTTACA--ACATTAAACAATTCAATTTGCAATACTTAAAAACTTCAATTTACA
* *
34664662 ACATTTAAACACTTCAATTTGCAGCACTTT-AACACTTCAATTTGCAGCATTTTAACATCTCAAT
64 ACATTTAAACACTTCAATTTACAGCA-TTTAAACACTTCAATTTGCAGCACTTTAACATCTCAAT
* * *
34664726 TAACAACATTTATACTCCTCAATTACAGCGATAAAACATCTCAATTTCCAGCAACTAAACACTTC
128 TAACAACATTTATACACATCAATTACAGCAATAAAACATCTCAATTTCCAGCAACTAAACACTTC
34664791 AATTTGT-AGTACTTAAACACTTCAATTTACAACATT
193 AATTT-TCAGTACTTAAACACTTCAATTTACAACATT
* * * *
34664827 TAAACACTTCAATTTACAACATTCAGACACTTCAATTTGCAATACTTAAACACTTCAATTTACTA
1 TAAACACTTCAATTTACAACATT-AAACAATTCAATTTGCAATACTTAAAAACTTCAATTTACAA
* *
34664892 CATTTAAGCACTTTAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTA
65 CATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTA
*
34664957 ACAACATTTATACACATTAATTACAGCAATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
130 ACAACATTTATACACATCAATTACAGCAATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
* *
34665022 TTTTCAGTATTTAAACACTTCAATTTACAGCATT
195 TTTTCAGTACTTAAACACTTCAATTTACAACATT
*
34665056 TAAACACTTCAATTTACAGCATTTAAACA
1 TAAACACTTCAATTTACAACA-TTAAACA
34665085 GCAGCAACCA
Statistics
Matches: 235, Mismatches: 18, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
227 2 0.01
228 6 0.03
229 225 0.96
230 2 0.01
ACGTcount: A:0.39, C:0.22, G:0.05, T:0.34
Consensus pattern (228 bp):
TAAACACTTCAATTTACAACATTAAACAATTCAATTTGCAATACTTAAAAACTTCAATTTACAAC
ATTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCAATTAA
CAACATTTATACACATCAATTACAGCAATAAAACATCTCAATTTCCAGCAACTAAACACTTCAAT
TTTCAGTACTTAAACACTTCAATTTACAACATT
Found at i:34666295 original size:10 final size:10
Alignment explanation
Indices: 34666280--34666313 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
34666270 TAATGTACAG
34666280 AACATTATTT
1 AACATTATTT
34666290 AACATTATTT
1 AACATTATTT
34666300 AACATTATTT
1 AACATTATTT
34666310 AACA
1 AACA
34666314 AAAGAGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (10 bp):
AACATTATTT
Found at i:34668910 original size:40 final size:40
Alignment explanation
Indices: 34668810--34668940 Score: 156
Period size: 40 Copynumber: 3.2 Consensus size: 40
34668800 TGTTTTTTGC
* * *
34668810 GGCGTTTTTCAGAAAGCGCCGCTAATGCTTCAATCTGTAGCT
1 GGCGTTTTTCAAAAAGCGCCGCTAATGC-TCGATCTATAG-T
*
34668852 -GCATTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGT
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGT
* * * *
34668891 GGCGTTTTTTAAAAAGCGCCGCTAATACTCGATTTATAGC
1 GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGT
34668931 GGCGGTTTTT
1 GGC-GTTTTT
34668941 ATCCAAATGC
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 46 0.59
41 31 0.40
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAGCGCCGCTAATGCTCGATCTATAGT
Found at i:34676378 original size:24 final size:23
Alignment explanation
Indices: 34676351--34676414 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 23
34676341 ACATTGTTTG
34676351 TGAACATGTTCAATTATATATTCA
1 TGAACATGTTCAATTA-ATATTCA
* * *
34676375 TGAACATGTTCATTTAATGTTCG
1 TGAACATGTTCAATTAATATTCA
* *
34676398 TAAACATGTTCGATTAA
1 TGAACATGTTCAATTAA
34676415 GTTAAATGAA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 19 0.56
24 15 0.44
ACGTcount: A:0.34, C:0.12, G:0.12, T:0.41
Consensus pattern (23 bp):
TGAACATGTTCAATTAATATTCA
Found at i:34678429 original size:24 final size:26
Alignment explanation
Indices: 34678402--34678463 Score: 74
Period size: 26 Copynumber: 2.5 Consensus size: 26
34678392 TATTTCATTA
34678402 TATCCTACTATTT-TTTTAGT-TTTT
1 TATCCTACTATTTATTTTAGTATTTT
* *
34678426 TATCCTACCATTTATTTTATTATTTT
1 TATCCTACTATTTATTTTAGTATTTT
**
34678452 TATTATACTATT
1 TATCCTACTATT
34678464 ATCCATTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 12 0.39
25 6 0.19
26 13 0.42
ACGTcount: A:0.23, C:0.13, G:0.02, T:0.63
Consensus pattern (26 bp):
TATCCTACTATTTATTTTAGTATTTT
Found at i:34691153 original size:43 final size:43
Alignment explanation
Indices: 34690969--34691307 Score: 160
Period size: 43 Copynumber: 7.7 Consensus size: 43
34690959 CAATCATCAG
* * *
34690969 TCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACTAGA
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAAA
* ** * *
34691012 TATTATCTTCACTGAGCAGGAGTACAGCA-GATCAAATTTTA-GAGAA
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCT-AAA---TACCA-AA
* * * ** * * *
34691058 TCTTATCTCCA-TGTA-CCGGCGATGGAGCAGATTCCAATCATC-AG
1 TCTTATCTTCACTG-AGCAGGAG-TGGAGCAGGCT-AAAT-ACCAAA
34691102 TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAAA
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAAA
* ** *
34691145 TCTTATCTTCACTGAGCAGGAGTGAAGCAGATCGACT-TTTA-GAGAA
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAG---G-CTAAATACCA-AA
* * * ** * * *
34691191 TCTTATC-CCTA-TGTA-CCGGCGATGGAGCAGATTCCAATCATC-AG
1 TCTTATCTTC-ACTG-AGCAGGAG-TGGAGCAGGCT-AAAT-ACCAAA
34691235 TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAAA
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAAA
* *
34691278 TCTTATCTTCACTGAGTAGGAGTGAAGCAG
1 TCTTATCTTCACTGAGCAGGAGTGGAGCAG
34691308 ATCGACTTTT
Statistics
Matches: 217, Mismatches: 50, Indels: 58
0.67 0.15 0.18
Matches are distributed among these distances:
42 7 0.03
43 93 0.43
44 42 0.19
45 30 0.14
46 39 0.18
47 6 0.03
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
TCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAAA
Found at i:34691185 original size:133 final size:133
Alignment explanation
Indices: 34690946--34691418 Score: 815
Period size: 133 Copynumber: 3.6 Consensus size: 133
34690936 CCAATGGACA
* * *
34690946 ATGGAGCAGATTCCAATCATCAGTCTTATCTTCACTGAGTAGGAGTGGAGCAGGCTAAATACTAG
1 ATGGAGCAGATTCCAATCATCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAA
* * *
34691011 ATATTATCTTCACTGAGCAGGAGT-ACAGCAGATCAAATTTTAGAGAATCTTATCTCCATGTACC
66 ATCTTATCTTCACTGAGCAGGAGTGA-AGCAGATCGACTTTTAGAGAATCTTATCTCCATGTACC
34691075 GGCG
130 GGCG
34691079 ATGGAGCAGATTCCAATCATCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAA
1 ATGGAGCAGATTCCAATCATCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAA
34691144 ATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCGACTTTTAGAGAATCTTATC-CCTATGTACC
66 ATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCGACTTTTAGAGAATCTTATCTCC-ATGTACC
34691208 GGCG
130 GGCG
34691212 ATGGAGCAGATTCCAATCATCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAA
1 ATGGAGCAGATTCCAATCATCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAA
* * *
34691277 ATCTTATCTTCACTGAGTAGGAGTGAAGCAGATCGACTTTTAGAGAATCTTATCTCTACGTACCG
66 ATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCGACTTTTAGAGAATCTTATCTCCATGTACCG
34691342 GCG
131 GCG
* *
34691345 ATGGAGCAGATTCCAATCATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAG
1 ATGGAGCAGATTCCAATCATCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAA
34691410 ATCTTATCT
66 ATCTTATCT
34691419 CCACGTATCG
Statistics
Matches: 326, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
132 2 0.01
133 322 0.99
134 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (133 bp):
ATGGAGCAGATTCCAATCATCAGTCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAA
ATCTTATCTTCACTGAGCAGGAGTGAAGCAGATCGACTTTTAGAGAATCTTATCTCCATGTACCG
GCG
Found at i:34691642 original size:45 final size:45
Alignment explanation
Indices: 34691578--34691749 Score: 240
Period size: 45 Copynumber: 3.8 Consensus size: 45
34691568 GGAGTAGACC
* *
34691578 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCA
1 AGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTAAAGATAGCA
* **
34691623 AGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAGGCAGCA
1 AGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTAAAGATAGCA
* *
34691668 AGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAA-ATAGCA
1 AGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACT-AAAGATAGCA
* *
34691713 AGTCTTATCTTCCTGAAGTTGCA-TGAAGCAGACTAAA
1 AGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTAAA
34691750 ATTACAGATC
Statistics
Matches: 112, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
43 3 0.03
44 10 0.09
45 97 0.87
46 2 0.02
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (45 bp):
AGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTAAAGATAGCA
Found at i:34691732 original size:90 final size:89
Alignment explanation
Indices: 34691578--34691746 Score: 277
Period size: 90 Copynumber: 1.9 Consensus size: 89
34691568 GGAGTAGACC
* *
34691578 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCAAGTCTTATCTCCCTAAAGTT
1 AGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTAAAGATAGCAAGTCTTATCTCCCTAAAGTT
34691643 GCAGTGAAGCAGACTGAAGGCAGCA
66 GCA-TGAAGCAGACTGAAGGCAGCA
* *
34691668 AGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTGAAA-ATAGCAAGTCTTATCTTCCTGAAGT
1 AGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACT-AAAGATAGCAAGTCTTATCTCCCTAAAGT
34691732 TGCATGAAGCAGACT
65 TGCATGAAGCAGACT
34691747 AAAATTACAG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
89 11 0.15
90 60 0.81
91 3 0.04
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.25
Consensus pattern (89 bp):
AGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACTAAAGATAGCAAGTCTTATCTCCCTAAAGTT
GCATGAAGCAGACTGAAGGCAGCA
Found at i:34691815 original size:87 final size:88
Alignment explanation
Indices: 34691713--34691883 Score: 256
Period size: 88 Copynumber: 2.0 Consensus size: 88
34691703 GAAAATAGCA
* * * *
34691713 AGTCTTATCTTCCTGAAGTTGCATGAAGCAGACT-AAAATTACAGATCTTATCTCCATGTACC-A
1 AGTCTTATCTTCCTGAAATTGCAGGAAGCAGACTGAAAATTACAAATCTTATCTCCATATACCGA
34691776 GCTATGAAGCAGATCTCAGCTACT
66 -CTATGAAGCAGATCTCAGCTACT
*
34691800 AGTCTTATCTTCCTGAAATTGCAGGAAGCAGACTGAAAATTACAAATCTTATCTCCATATATCGA
1 AGTCTTATCTTCCTGAAATTGCAGGAAGCAGACTGAAAATTACAAATCTTATCTCCATATACCGA
* *
34691865 CTATGGAGCAGCTCTCAGC
66 CTATGAAGCAGATCTCAGC
34691884 CACCAACCTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
87 32 0.43
88 42 0.56
89 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (88 bp):
AGTCTTATCTTCCTGAAATTGCAGGAAGCAGACTGAAAATTACAAATCTTATCTCCATATACCGA
CTATGAAGCAGATCTCAGCTACT
Found at i:34691850 original size:44 final size:44
Alignment explanation
Indices: 34691578--34691855 Score: 214
Period size: 45 Copynumber: 6.3 Consensus size: 44
34691568 GGAGTAGACC
* *
34691578 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGATAGCA
1 AGTCTTATCTCCCTGAAATTGCAGTGAAGCAGACTAAA-ATAGCA
***
34691623 AGTCTTATCTCCCT-AAAGTTGCAGTGAAGCAGACTGAAGGCAGCA
1 AGTCTTATCTCCCTGAAA-TTGCAGTGAAGCAGACT-AAAATAGCA
* *
34691668 AGTCTTATCTCCCT-AAAGTTACAGTGGAGCAGACTGAAAATAGCA
1 AGTCTTATCTCCCTGAAA-TTGCAGTGAAGCAGACT-AAAATAGCA
* *
34691713 AGTCTTATCTTCCTGAAGTTGCA-TGAAGCAGACTAAAATTA-C-
1 AGTCTTATCTCCCTGAAATTGCAGTGAAGCAGACTAAAA-TAGCA
* * *** * ** *
34691755 AGATCTTATCTCCATGTACCAGCTA-TGAAGCAGATCTCAGCTA-CT
1 AG-TCTTATCTCCCTGAAATTGC-AGTGAAGCAGA-CTAAAATAGCA
*
34691800 AGTCTTATCTTCCTGAAATTGCAG-GAAGCAGACTGAAAATTA-CA
1 AGTCTTATCTCCCTGAAATTGCAGTGAAGCAGACT-AAAA-TAGCA
*
34691844 AATCTTATCTCC
1 AGTCTTATCTCC
34691856 ATATATCGAC
Statistics
Matches: 187, Mismatches: 35, Indels: 23
0.76 0.14 0.09
Matches are distributed among these distances:
42 4 0.02
43 29 0.16
44 54 0.29
45 96 0.51
46 4 0.02
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAATTGCAGTGAAGCAGACTAAAATAGCA
Found at i:34693225 original size:24 final size:26
Alignment explanation
Indices: 34693198--34693259 Score: 67
Period size: 26 Copynumber: 2.5 Consensus size: 26
34693188 TATTTCATTA
34693198 TATCTTACTATTT-TTTTAGT-TTTT
1 TATCTTACTATTTATTTTAGTATTTT
* * *
34693222 TATCCTACCATTTATTTTATTATTTT
1 TATCTTACTATTTATTTTAGTATTTT
34693248 TAT-TATACTATT
1 TATCT-TACTATT
34693260 ATCCATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
24 11 0.37
25 6 0.20
26 13 0.43
ACGTcount: A:0.23, C:0.11, G:0.02, T:0.65
Consensus pattern (26 bp):
TATCTTACTATTTATTTTAGTATTTT
Found at i:34700301 original size:4 final size:4
Alignment explanation
Indices: 34700292--34700321 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
34700282 TTTCTAAAAT
34700292 ATTA ATTA ATTA ATTA ATTA ATTCA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATT-A ATTA A
34700322 ATTATTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (4 bp):
ATTA
Found at i:34710153 original size:30 final size:30
Alignment explanation
Indices: 34710063--34710161 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
34710053 TAGGTACAAG
34710063 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
34710093 AGGTAGTGAAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
34710123 TGGTGGTGGAGTAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
34710153 TGGTGGTGG
1 TGGTGGTGG
34710162 CAAAGGCTAG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.18, C:0.05, G:0.48, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:34711205 original size:88 final size:88
Alignment explanation
Indices: 34710811--34711405 Score: 464
Period size: 87 Copynumber: 6.7 Consensus size: 88
34710801 GGCATGTGAT
** * * ** * * * *
34710811 CCTGA-GCTCAACTCATTTCTCGCAATATGAATTGA-CTCGTTAAAAACAGACATT-AAAATAGA
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAAAAA
* * *
34710873 AATTGAACATAGCTCAGCATGTGAG
66 AATTGAAAATACCTCAGC--GTGTG
* * *
34710898 CC-AAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-AAAACA-AAATTTGTAAAACA
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAA-TTG-AAAAAA
* ** * **
34710958 GATTTTGAAAATACCTCGGTATGTG
64 AAAATTGAAAATACCTCAGCGTGTG
** * * * *
34710983 ACCCAAGGCTTAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTGAAAAAA
1 -CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTG--AAAA
*
34711046 AAACATCAATTGAAAATACCTCGGCGTGTG
62 AAA-A--AATTGAAAATACCTCAGCGTGTG
* *
34711076 ACCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAAAA
1 -CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAAAA
*
34711141 AAAATTGAAAATGCCTCAGCGTGT-
64 AAAATTGAAAATACCTCAGCGTGTG
* *
34711165 CCTGAGGCTGAACTCACATCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTGAAAAA
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-G-AAAACAGAAA-TTGAAAAA
* *
34711229 CAGAATTTGAAAATACCTCAGCGTGTG
63 -AAAAATTGAAAATACCTCAGCGTGTG
** * * * * *
34711256 AGTCAAGGCTCAATTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGAAGAAC
1 CCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAA-AAA
* *
34711321 AAAAATGGAAAACACCTCAGC--GT-
63 AAAAATTGAAAATACCTCAGCGTGTG
* * *
34711344 CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
34711406 TACCTCAACG
Statistics
Matches: 425, Mismatches: 58, Indels: 51
0.80 0.11 0.10
Matches are distributed among these distances:
84 2 0.00
85 11 0.03
86 8 0.02
87 136 0.32
88 44 0.10
89 24 0.06
90 54 0.13
91 28 0.07
92 40 0.09
93 60 0.14
94 1 0.00
95 17 0.04
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (88 bp):
CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAAAAA
AATTGAAAATACCTCAGCGTGTG
Found at i:34711230 original size:180 final size:178
Alignment explanation
Indices: 34711044--34711405 Score: 455
Period size: 180 Copynumber: 2.0 Consensus size: 178
34711034 AAATTGAAAA
* * * *
34711044 AAAAACATCAA-TTGAAAATACCTCGGCGTGTGAC-CTGAGGCTCAACTCACCTCTCGTAATATG
1 AAAAACA-CAATTTGAAAATACCTCAGCGTGTGACTC-AAGGCTCAACTCACCACTCGCAATATG
* * * **
34711107 AGTTGATTTTTTTGACAA-ACATAAATTGAA-AAAAAAAATTGAAAATGCCTCAGCGTGTCCTGA
64 AGCTGATTTTTTTGA-AACACAGAAATTGAAGAAAAAAAATGGAAAACACCTCAGC--GTCCTGA
* *
34711170 GGCTGAACTCACATCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTG
126 GGCTCAACTCACATCTCGCAATATGAGCTGATTTTTTT-GAAAAACAGAAA-TTG
* * *
34711224 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAATTCACCACTCGCAATATGAG
1 AAAAACACAATTTGAAAATACCTCAGCGTGTGACTCAAGGCTCAACTCACCACTCGCAATATGAG
* * *
34711289 CTGATTTTTTTGAAACACAGAAATTGAAGAACAAAAATGGAAAACACCTCAGCGTCTTGAGGTTC
66 CTGATTTTTTTGAAACACAGAAATTGAAGAAAAAAAATGGAAAACACCTCAGCGTCCTGAGGCTC
* *
34711354 AACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTG
131 AACTCACATCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTG
34711402 AAAA
1 AAAA
34711406 TACCTCAACG
Statistics
Matches: 158, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
178 14 0.09
179 47 0.30
180 76 0.48
181 21 0.13
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27
Consensus pattern (178 bp):
AAAAACACAATTTGAAAATACCTCAGCGTGTGACTCAAGGCTCAACTCACCACTCGCAATATGAG
CTGATTTTTTTGAAACACAGAAATTGAAGAAAAAAAATGGAAAACACCTCAGCGTCCTGAGGCTC
AACTCACATCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTG
Found at i:34711241 original size:13 final size:14
Alignment explanation
Indices: 34711209--34711241 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
34711199 GATTTTTTTG
34711209 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
34711223 GAAAAACAGAATTT
1 GAAAAACAAAATTT
34711237 GAAAA
1 GAAAA
34711242 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:34711755 original size:148 final size:146
Alignment explanation
Indices: 34711318--34711753 Score: 791
Period size: 148 Copynumber: 3.0 Consensus size: 146
34711308 GAAATTGAAG
* **
34711318 AACAAAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
34711383 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
34711448 GAGTTGATTTTTGACA
131 GAGTTGATTTTTGACA
34711464 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA--T
* *
34711529 TTTTTTGAAAGAAAGAAATTTAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
64 TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAAT
34711594 ATGAGTTGATTTTTGACA
129 ATGAGTTGATTTTTGACA
34711612 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
* *
34711677 TTTTGGAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAATTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
34711742 GAGTTGATTTTT
131 GAGTTGATTTTT
34711754 TTTGAAACAT
Statistics
Matches: 279, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
146 135 0.48
148 144 0.52
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.31
Consensus pattern (146 bp):
AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGACA
Found at i:34711990 original size:73 final size:73
Alignment explanation
Indices: 34711867--34712605 Score: 363
Period size: 73 Copynumber: 9.3 Consensus size: 73
34711857 AAGGCAAAAA
* * * *
34711867 TTGAAAAACAGAAATTGAAAACACCTCAGCATGCCCTAAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
34711932 GTTGATTT
66 GTTGATTT
* *
34711940 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCTGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
34712005 GTTGATTT
66 GTTGATTT
* * * * *
34712013 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
34712078 GTTGATTTT
66 GTTGA-TTT
* * * * ** ** * *
34712087 TTGAAAAGCATAAATTGAAAAA-ACGGAATTTGAAAAGACCCCGGCGTATGGCCCGAGACTCAAC
1 TTGAAAAACAGAAATT-AAAAATAC-----CT-CAGCGTGCCC--TG-A-GGCTC-A-ACT----
* * *
34712151 TCACCTTTCACAATACGAGTTGATTTT
49 -CACCTCTCGCAATATGAGTTGA-TTT
* * * *
34712178 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
34712242 GTTGATTCTT
66 GTTGA-T-TT
** * ** * *** * * *
34712252 TTGAAAAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCACGTGATCCAAGGCTCAACTC
1 TTGAAAAACAGAAATT-AAAA--A-TACCTCAGCGTGCC-CTG-A-G-GCT-CAA--CT-----C
*
34712317 ACCTCTTGCAATATGAGTTGGATTT
50 ACCTCTCGCAATATGAGTT-GATTT
* *
34712342 TTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGT--CTTGAGGCTCAACTCACCT
1 TTG----A-AAA---AC--A--GAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCT
34712405 CTCGCAATATGAGTTGATTTTT
54 CTCGCAATATGAGTTGA--TTT
* * * *
34712427 TTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
1 TTGA----------AAA-ACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTC
34712492 TCGCAATATGAGTTGATTTTT
55 TCGCAATATGAGTTGA--TTT
* * * *
34712513 TTGAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
34712578 GTTGATTCT
66 GTTGATT-T
* *
34712587 TT-AAAAATAGACATTAAAA
1 TTGAAAAACAGAAATTAAAA
34712606 TAGAAATTAA
Statistics
Matches: 516, Mismatches: 85, Indels: 130
0.71 0.12 0.18
Matches are distributed among these distances:
73 168 0.33
74 29 0.06
75 69 0.13
76 6 0.01
78 3 0.01
79 7 0.01
80 10 0.02
81 3 0.01
82 3 0.01
83 5 0.01
84 51 0.10
85 8 0.02
86 51 0.10
88 3 0.01
89 5 0.01
90 19 0.04
91 49 0.09
92 4 0.01
93 1 0.00
94 2 0.00
95 4 0.01
96 1 0.00
98 4 0.01
99 1 0.00
100 1 0.00
101 3 0.01
102 6 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (73 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTT
Found at i:34712237 original size:237 final size:235
Alignment explanation
Indices: 34711779--34712842 Score: 915
Period size: 237 Copynumber: 4.3 Consensus size: 235
34711769 AAAAAAACGA
*
34711779 AAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAA
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT---
* * *
34711844 AAGCAGAATTTGTAAGGCAA-AAATTGAAAAACAGAAATTGAAAACACCTCAGC-ATGCCCTAAG
63 --------TTTG-AA--AAATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGATGCCC-AAG
* * **
34711907 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTAAAAATACCTCGGC
116 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAAC
* * *
34711970 GTGCCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAGCAT
181 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAG
*
34712024 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * * * *
34712089 GAAAAGCATAAATTGAAAAAACGGAATTTGAAAAGACCCCGGCGTATGGCCCGAGACTCAACTCA
66 GAAAA--ATAAATTG-AAAAACGGAAATTGAAAATACCTCAGCG-AT-GCCCAAGGCTCAACTCA
* * * * * *
34712154 CCTTTCACAATACGAGTTGA-TTTTTTGACA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAG
126 CCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAG
34712217 GCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATTGAAAAGCAG
191 GCTCAACTCACCTCTCGCAATATGAGTTGA----TTT------T-----TTGAAAAGCAG
* *
34712277 AAATTGAAAATACCTCAGCACGTGATCC-AAGGCTCAACTCACCTCTTGCAATATGAGTTGGA-T
1 AAATTGAAAATACCTCAG--CGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-GATT
* ***
34712340 TTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCG-T-CTTGAGGCTCAACTCAC
62 TTTTGAAAAATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGATGCCCAAGGCTCAACTCAC
34712403 CTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAAC
127 CTCTCGCAATATGA---G------TTGA--TTTTTTTGAAAGACAGAAATTGAAAATACCTCAAC
* *
34712468 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAG
181 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGCAG
* * *
34712524 AAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACTTCTCGCAATATGAGTTGATTCTT
1 AAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
34712588 T-AAAAATAGACATT-AAAATA--GAAATT-AAACATAGCTCAGC-ACGTGAGCCAAGGCTCAAC
65 TGAAAAATA-A-ATTGAAAA-ACGGAAATTGAAA-ATACCTCAGCGA--TG-CCCAAGGCTCAAC
* * * *
34712647 TCACTTCTCGCAATATGAATTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTT
123 TCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCT
* * *
34712712 GAGGCTCAACTCACCTCCTTGCAATATGAGTTGATTTTTTAAAACAGAATTTG
188 GAGGCTCAACTCACCT-CTCGCAATATGAGTTGATTTTTTGAAA-AGCA---G
* * *
34712765 AAAAACAGATTTTGAAAATACCTCAGCGTG-CCCGAGGCTCAACTCACCTCTCGCAATATAAGTA
1 ----A-A-A--TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
34712829 GATTTTTTTGAAAA
58 GA-TTTTTTGAAAA
34712843 TAGAAAAAAA
Statistics
Matches: 687, Mismatches: 63, Indels: 133
0.78 0.07 0.15
Matches are distributed among these distances:
231 1 0.00
233 3 0.00
234 10 0.01
235 22 0.03
237 154 0.22
238 30 0.04
239 4 0.01
241 1 0.00
242 2 0.00
243 3 0.00
244 27 0.04
245 100 0.15
246 10 0.01
247 24 0.03
248 83 0.12
249 19 0.03
250 9 0.01
251 1 0.00
252 24 0.03
253 35 0.05
255 43 0.06
256 5 0.01
257 4 0.01
258 4 0.01
260 9 0.01
261 60 0.09
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (235 bp):
AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
GAAAAATAAATTGAAAAACGGAAATTGAAAATACCTCAGCGATGCCCAAGGCTCAACTCACCTCT
CGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCAG
Found at i:34712271 original size:14 final size:14
Alignment explanation
Indices: 34712252--34712286 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
34712242 GTTGATTCTT
*
34712252 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
34712266 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
34712280 TTGAAAA
1 TTGAAAA
34712287 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:34712286 original size:164 final size:162
Alignment explanation
Indices: 34711940--34712848 Score: 925
Period size: 164 Copynumber: 5.5 Consensus size: 162
34711930 GAGTTGATTT
* * *
34711940 TTGAAAAACAGAAATTAAAAATACCTCGGCGT-GCCCTGAGGCTCAGCTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGGCCC-GAGGCTCAACTCACCTCTCGCAATATG
*
34712004 AGTTGA--TTTTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
65 AGTTGATTTTTTTGAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* *
34712067 TCGCAATATGAGTTGATTTTTTGAAAAGCATAAA
129 TCGCAATATGAGTTGATTTTTTGAAAAGTAGAAA
* * * * * * * *
34712101 TTGAAAAAACGGAATTTGAAAAGACCCCGGCGTATGGCCCGAGACTCAACTCACCTTTCACAATA
1 TTG-AAAAACAGAAATTGAAAATACCTCAGCG--TGGCCCGAGGCTCAACTCACCTCTCGCAATA
* *
34712166 CGAGTTGA-TTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
63 TGAGTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCT
34712230 CTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAA
128 CTCGCAATATGAGTTGATT-TTTTGAAAAGTAGAAA
* ** * *
34712266 TTGAAAAGCAGAAATTGAAAATACCTCAGCACGTGATCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAG--CGTGGCCCGAGGCTCAACTCACCTCTCGCAATAT
* * *
34712331 GAGTTGGATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGC--GTCTTGAGGC
64 GAGTT-GA-TTTT------T---TTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
* *****
34712394 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG---ATTTTTTT
117 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAGTAGAAA
* * * **
34712438 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGA
* * *
34712503 GTTGATTTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACTTCT
66 GTTGATTTTTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
* * *
34712568 CGCAATATGAGTTGATTCTTT-AAAAATAGACA
130 CGCAATATGAGTTGATTTTTTGAAAAGTAGAAA
* * * *
34712600 TT--AAAATAGAAATT-AAACATAGCTCAGCACGTGAG-CCAAGGCTCAACTCACTTCTCGCAAT
1 TTGAAAAACAGAAATTGAAA-ATACCTCAG--CGTG-GCCCGAGGCTCAACTCACCTCTCGCAAT
* * * * *
34712661 ATGAATTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
62 ATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
* * *
34712726 CTCCTTGCAATATGAGTTGATTTTTT-AAAA-CAGAAT
126 CT-CTCGCAATATGAGTTGATTTTTTGAAAAGTAGAAA
** *
34712762 TTGAAAAACAGATTTTGAAAATACCTCAGCGT-GCCCGAGGCTCAACTCACCTCTCGCAATATAA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
34712826 GTAGATTTTTTTGAAAATAGAAA
66 GTTGATTTTTTTGAAAACAGAAA
34712849 AAAACATCAA
Statistics
Matches: 617, Mismatches: 93, Indels: 77
0.78 0.12 0.10
Matches are distributed among these distances:
159 28 0.05
160 30 0.05
161 81 0.13
162 117 0.19
163 25 0.04
164 158 0.26
165 35 0.06
166 2 0.00
167 3 0.00
168 4 0.01
169 2 0.00
170 33 0.05
172 28 0.05
173 1 0.00
175 42 0.07
176 6 0.01
177 22 0.04
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (162 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGGCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTTGAAAAGTAGAAA
Found at i:34712417 original size:84 final size:83
Alignment explanation
Indices: 34712178--34712842 Score: 437
Period size: 75 Copynumber: 7.9 Consensus size: 83
34712168 AGTTGATTTT
* * *
34712178 TTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
34712243 TTGATTCTTTTGAAAAGTAGAAA
64 TTGATT-TTTTGAAAA--ATAAA
* ** *
34712266 TTGAAAAGCAGAAATTGAAAATACCTCAGCACGTGATCCAAGGCTCAACTCACCTCTTGCAATAT
1 TTGAAAA-CAGAAATTGAAAATACCTCAG--CGT-CT-TGAGGCTCAACTCACCTCTCGCAATAT
34712331 GAGTTGGA-TTTTTGAAAAATAAA
61 GAGTT-GATTTTTTGAAAAATAAA
*
34712354 TTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
*** ***
34712419 TGATTTTTTTG-ATTTTTTT
65 TGA-TTTTTTGAAAAATAAA
*
34712438 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
34712503 GTTGATTTTTT------T-GA
63 GTTGATTTTTTGAAAAATAAA
* * *
34712517 ---AAAACAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACTTCTCGCAATATGA
1 TTGAAAACAGAAATTGAAAA-TACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
34712578 GTTGATTCTTT-AAAAATAGACA
63 GTTGATTTTTTGAAAAATA-A-A
* * ** *
34712600 TT-AAAATAGAAATT-AAACATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACTTCTCGCAATA
1 TTGAAAACAGAAATTGAAA-ATACCTCAG--CGT---CTTGAGGCTCAACTCACCTCTCGCAATA
* * * *
34712662 TGAATTGATTTTTT-TAAAAGACA
60 TGAGTTGATTTTTTGAAAAATAAA
** * ** ** * *
34712685 --G-AAATTGAAAAT--ACCT-CAAC-GTGTCTTGAGGCTCAACTCACCTCCTTGCAATATGAGT
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCT-CTCGCAATATGAGT
* *
34712743 TGATTTTTT-AAAACAGAAT
65 TGATTTTTTGAAAA-ATAAA
** ** *
34712762 TTGAAAAACAGATTTTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCACCTCTCGCAATATAAG
1 TTG-AAAACAGAAATTGAAAATACCTCAGCGT-CTTGAGGCTCAACTCACCTCTCGCAATATGAG
*
34712827 TAGATTTTTTTGAAAA
64 TTGA-TTTTTTGAAAA
34712843 TAGAAAAAAA
Statistics
Matches: 461, Mismatches: 70, Indels: 93
0.74 0.11 0.15
Matches are distributed among these distances:
73 1 0.00
74 6 0.01
75 69 0.15
76 27 0.06
77 5 0.01
79 2 0.00
80 3 0.01
81 7 0.02
82 1 0.00
83 16 0.03
84 56 0.12
85 55 0.12
86 66 0.14
87 45 0.10
88 35 0.08
89 25 0.05
90 9 0.02
91 31 0.07
92 2 0.00
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.30
Consensus pattern (83 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGAAAAATAAA
Found at i:34712441 original size:498 final size:481
Alignment explanation
Indices: 34711228--34712838 Score: 1445
Period size: 498 Copynumber: 3.3 Consensus size: 481
34711218 AATTTGAAAA
* * * ** * * *
34711228 ACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAATTCACCACTCGCAATATGAGCTGA
1 ACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * * * * *
34711293 TTTTTTTGAAACACAGAAATTGAAGAACAAAAATGGAAAACACCTCAGCGTCT-TGAGGTTCAAC
64 -TTTTTTGAAA-ATAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAAC
* *
34711357 TCACCTCTCGCAATATGAGCTGATTT-TTT-T--G---AAA--G----ACAGAAATTGAAAATAC
127 TCACCTCTCGCAATATGAGTTGATTTATTTGTAAGAAAAAATTGAAAAACAGAAATTGAAAACAC
* * * * * * *
34711409 CTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATT
192 CTCAGC-AGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT
* * * * * *
34711474 GAAATTACCTCAGCGT--CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTTGA
256 AAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGA
* *
34711537 AAGAA-AGAAATTTAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
318 AA-AACAGAAA-TTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * ** * * * *
34711600 TGATT-TTT-GACA-A-ACA--AAAATTGAAATT------ACCTCAGCGTCTTGAG----G-TTC
381 TGATTCTTTAAAAATAGACATTAAAAAAGAAATTAAACAGACCCCAGC-ACATGAGCCAAGACTC
* *
34711648 AACTCACCTCTCGCAATATGAGCTGATTTTTTTGGAAG
445 AACTCACCTTTCGCAATATGAGTTGATTTTTTT-GAAG
*
34711686 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAATTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
*
34711751 TTTTTTGAAACAT--AAATT-AAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCA
64 TTTTTTGAAA-ATAGAAATTGAAAAACA-G-AAATTGAAAATACCTCAGCGTGT-CCGAGGCTCA
*
34711813 ACTCACCTCTCGCAATATGAGTTGATTTGAAAAGCAGAATTTGTAAGGCAAAAATTGAAAAACAG
125 ACTCACCTCTCGCAATATGAGTTGATTT----------ATTTGTAA-GAAAAAATTGAAAAACAG
34711878 AAATTGAAAACACCTCAGCATGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
179 AAATTGAAAACACCTCAGCA-GCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
** *
34711943 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTT
243 AAAAACAGAAATTAAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
34712008 GA-TTTTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
308 GATTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* * * **
34712072 ATATGAGTTGATTTTTTGAAAAGCATA-A-ATTGAAAAAACGGAATTTGAAA-AGACCCCGGCGT
373 ATATGAGTTGATTCTTT-AAAA--ATAGACATT-AAAAAA--GAAATT-AAACAGACCCCAGCAC
* * *
34712134 ATG-GCCCGAGACTCAACTCACCTTTCACAATACGAGTTGA-TTTTTTGACA-
431 ATGAG-CCAAGACTCAACTCACCTTTCGCAATATGAGTTGATTTTTTTGA-AG
* * *
34712184 ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
34712249 CTTTTGAAAAGTAGAAATTGAAAAGCAGAAATTGAAAATACCTCAGCACGTGATCCAAGGCTCAA
66 -TTTTGAAAA-TAGAAATTGAAAAACAGAAATTGAAAATACCTCAG--CGTG-TCCGAGGCTCAA
* * *
34712314 CTCACCTCTTGCAATATGAGTTGGA-TT-TTTG-AA-AAATAAATTGACAAACGGAAATTGAAAA
126 CTCACCTCTCGCAATATGAGTT-GATTTATTTGTAAGAAA-AAATTGAAAAACAGAAATTGAAAA
* * * *
34712375 TACCTCAGC-GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTT
189 CACCTCAGCAGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGA--------
* * *
34712439 TGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
244 --AAA-ACAGAAATTAAAAATACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
34712504 TTGATTTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAATTCACTTCTC
306 TTGA-TTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* * * * *
34712569 GCAATATGAGTTGATTCTTTAAAAATAGACATTAAAATAGAAATTAAACATAGCTCAGCACGTGA
370 GCAATATGAGTTGATTCTTTAAAAATAGACATTAAAAAAGAAATTAAACAGACCCCAGCACATGA
* * *
34712634 GCCAAGGCTCAACTCA-CTTCTCGCAATATGAATTGATTTTTTTAAAAG
435 GCCAAGACTCAACTCACCTT-TCGCAATATGAGTTGATTTTTTT-GAAG
*
34712682 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCCTTGCAATATGAGTTGAT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT-CTCGCAATATGAGTTGAT
* * ** *
34712747 TTTTT-AAAACAGAATTTGAAAAACAGATTTTGAAAATACCTCAGCGTGCCCGAGGCTCAACTCA
65 TTTTTGAAAATAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCA
* * *
34712811 CCTCTCGCAATATAAGTAGATTTTTTTG
130 CCTCTCGCAATATGAGTTGATTTATTTG
34712839 AAAATAGAAA
Statistics
Matches: 951, Mismatches: 108, Indels: 152
0.79 0.09 0.13
Matches are distributed among these distances:
454 5 0.01
455 5 0.01
456 51 0.05
457 13 0.01
458 59 0.06
469 3 0.00
470 1 0.00
473 1 0.00
476 3 0.00
478 1 0.00
479 6 0.01
480 62 0.07
481 3 0.00
482 86 0.09
483 1 0.00
484 32 0.03
485 37 0.04
486 4 0.00
487 37 0.04
488 6 0.01
489 4 0.00
490 5 0.01
492 2 0.00
493 31 0.03
494 9 0.01
495 8 0.01
496 78 0.08
497 27 0.03
498 190 0.20
499 39 0.04
500 139 0.15
501 3 0.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (481 bp):
ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTGAAAATAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCAC
CTCTCGCAATATGAGTTGATTTATTTGTAAGAAAAAATTGAAAAACAGAAATTGAAAACACCTCA
GCAGCCCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAA
TACCTCAACGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGA
AATTAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTA
AAAATAGACATTAAAAAAGAAATTAAACAGACCCCAGCACATGAGCCAAGACTCAACTCACCTTT
CGCAATATGAGTTGATTTTTTTGAAG
Found at i:34712582 original size:409 final size:398
Alignment explanation
Indices: 34711352--34712842 Score: 930
Period size: 409 Copynumber: 3.7 Consensus size: 398
34711342 GTCTTGAGGT
* * * * * *
34711352 TCAACTCACCTCTCGCAATATGAGCTGATT-TTT-TTGA-AAGACAGAAATTGAAAATACCTCAA
1 TCAACTCACCTTTCACAATACGAGTTGATTCTTTATAGACAA-ACAGAAATTGAAAATACCTCAG
* *
34711414 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T-TTTT---G----A---CAAAC
65 CGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAGTAAAATTGAAAAC
* * * ** * * *
34711467 AAAAATTGAAATTACCTCAG--CGTCT-TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
129 AGAAATTGAAAATACCTCAGCACGTGTCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTT
***** * * *
34711529 TT-TTTTGAAA--G--AAA-GAAATTTAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
194 TTGAAAAAAAATTGACAAACGAAATTGAAAATACCTCAGCGTG-CCTGAGGCTCAACTCACCTCT
* * * * *
34711588 CGCAATATGAGTTGA--TTTTTGACAAA-CAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTC
258 CGCAATATGAGTTGATTTTTTTGA-AAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTC
* * * * * *
34711648 AACTCACCTCTCGCAATATGAGCTGATTTTTTTGGAAGACAGAAATTGAA-AA--T-ACCTCAAC
322 AACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAAAGAATTTAACCCCAGC
* ** *
34711709 G-TGTCTTGAGGC
386 GATGGCCCGAGAC
* * * * * * * *
34711721 TCAATTCACCTCTCGCAATATGAGTTGATTTTTTTTGAAACATAAATTAAAAAAACGAAAATTGA
1 TCAACTCACCTTTCACAATACGAGTTGA--TTCTTT-----AT--A-GACAAACA-G-AAATTGA
34711786 AAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAGCAGA
54 AAATACCTCAGCGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TT------C---
* * * *
34711851 ATTTGTAAGGCAAAAATTGAAAAACAGAAATTGAAAACACCTCAGCA--TGCCCTAAGGCTCAAC
108 TTTTG-AA-G-TAAAATTG-AAAACAGAAATTGAAAATACCTCAGCACGTGTCC-AAGGCTCAAC
* * *
34711914 TCACCTCTCGCAATATGAGTTGATTTTTG----AAAA---AC--A-GAAATTAAAAATACCTCGG
168 TCACCTCTTGCAATATGAGTTGATTTTTGAAAAAAAATTGACAAACGAAATTGAAAATACCTCAG
* *
34711969 CGTGCCCTGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCATAAATTGAA
233 CGTG-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAA
* * *
34712032 ATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCA
297 AATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACA
* *
34712097 TAAATTGAAAAAACGGAATTTGAAAAGACCCCGGCGTATGGCCCGAGAC
362 GAAATT----AAA--GAATTT----A-ACCCCAGCG-ATGGCCCGAGAC
*
34712146 TCAACTCACCTTTCACAATACGAGTTGATT-TTT-T-GAC-AACAGAAATTGAAATTACCTCAGC
1 TCAACTCACCTTTCACAATACGAGTTGATTCTTTATAGACAAACAGAAATTGAAAATACCTCAGC
34712207 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAAAGTAGAAATTGAAA
66 GTGTCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTG--AAGTA-AAATTGAAA
34712272 AGCAGAAATTGAAAATACCTCAGCACGTGATCCAAGGCTCAACTCACCTCTTGCAATATGAGTTG
127 A-CAGAAATTGAAAATACCTCAGCACGTG-TCCAAGGCTCAACTCACCTCTTGCAATATGAGTT-
*
34712337 GATTTTTGAAAAATAAATTGACAAACGGAAATTGAAAATACCTCAGCGT-CTTGAGGCTCAACTC
189 GATTTTTGAAAAA-AAATTGACAAAC-GAAATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTC
34712401 ACCTCTCGCAATATGAGTTGATTTTTTTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCA
252 ACCTCTCGCAATATGAGTTGATTTTTTTGA----------AAAG-CAGAAATTGAAAATACCTCA
*
34712466 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT-A
306 ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATTAA
* * * *
34712530 A-AA-TT-ACCTCAGCG-TGTCCTGAGGC
370 AGAATTTAACCCCAGCGATGGCCCGAGAC
* * * *
34712555 TCAATTCA-CTTCTCGCAATATGAGTTGATTCTTTAAAAATAGACATTAAAATAGAAATT-AAAC
1 TCAACTCACCTT-TCACAATACGAGTTGATTCTTT----ATAGAC----AAACAGAAATTGAAA-
* * * * *
34712618 ATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAATTGATT-TTTT----TA
56 ATACCTCAG--CGTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAGTA
**
34712678 AAA--G---ACAGAAATTGAAAATACCTCA--ACGTGTCTTGAGGCTCAACTCACCTCCTTGCAA
118 AAATTGAAAACAGAAATTGAAAATACCTCAGCACGTGTC-CAAGGCTCAACTCACCT-CTTGCAA
* * * ** *
34712736 TATGAGTTGATTTTTTAAAACAGAATTTGAAAAACAGATTTTGAAAATACCTCAGCGTGCCCGAG
181 TATGAGTTGATTTTTGAAAA-A-AAATTGACAAAC-GAAATTGAAAATACCTCAGCGTGCCTGAG
* *
34712801 GCTCAACTCACCTCTCGCAATATAAGTAGATTTTTTTGAAAA
243 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAA
34712843 TAGAAAAAAA
Statistics
Matches: 903, Mismatches: 95, Indels: 218
0.74 0.08 0.18
Matches are distributed among these distances:
369 26 0.03
371 2 0.00
372 3 0.00
378 1 0.00
381 3 0.00
382 3 0.00
383 55 0.06
384 1 0.00
385 1 0.00
395 3 0.00
398 5 0.01
399 36 0.04
400 3 0.00
401 32 0.04
402 11 0.01
405 1 0.00
406 6 0.01
407 114 0.13
408 72 0.08
409 205 0.23
410 7 0.01
411 45 0.05
412 38 0.04
413 1 0.00
414 27 0.03
415 6 0.01
416 6 0.01
417 3 0.00
418 2 0.00
420 3 0.00
421 18 0.02
422 7 0.01
423 44 0.05
424 6 0.01
425 89 0.10
426 18 0.02
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (398 bp):
TCAACTCACCTTTCACAATACGAGTTGATTCTTTATAGACAAACAGAAATTGAAAATACCTCAGC
GTGTCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTTGAAGTAAAATTGAAAACAG
AAATTGAAAATACCTCAGCACGTGTCCAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
GAAAAAAAATTGACAAACGAAATTGAAAATACCTCAGCGTGCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAGAATTTAACCCCAGCGATGG
CCCGAGAC
Found at i:34712771 original size:14 final size:14
Alignment explanation
Indices: 34712752--34712782 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
34712742 TTGATTTTTT
34712752 AAAACAGAATTTGA
1 AAAACAGAATTTGA
*
34712766 AAAACAGATTTTGA
1 AAAACAGAATTTGA
34712780 AAA
1 AAA
34712783 TACCTCAGCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.58, C:0.06, G:0.13, T:0.23
Consensus pattern (14 bp):
AAAACAGAATTTGA
Found at i:34715802 original size:18 final size:17
Alignment explanation
Indices: 34715769--34715807 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
34715759 TTGTATAAAT
34715769 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
34715787 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
34715804 TGTG
1 TGTG
34715808 GAAGGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:34715926 original size:8 final size:8
Alignment explanation
Indices: 34715913--34715941 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
34715903 CACTAGAGAC
34715913 CAGTGTTA
1 CAGTGTTA
34715921 CAGTGTTA
1 CAGTGTTA
34715929 CAGTGTTA
1 CAGTGTTA
34715937 CAGTG
1 CAGTG
34715942 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:34716084 original size:24 final size:23
Alignment explanation
Indices: 34716028--34716104 Score: 136
Period size: 23 Copynumber: 3.3 Consensus size: 23
34716018 AGTGTTATTG
34716028 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
34716051 TTCAGTGGTAGCTTCGGCTACTAT
1 ATCAGTGGTAGCTTCGGCTAC-AT
34716075 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
34716098 ATCAGTG
1 ATCAGTG
34716105 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
23 29 0.57
24 22 0.43
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:34723129 original size:18 final size:17
Alignment explanation
Indices: 34723096--34723134 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
34723086 TTGTATAAAT
34723096 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
34723114 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
34723131 TGTG
1 TGTG
34723135 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:34723252 original size:8 final size:8
Alignment explanation
Indices: 34723239--34723267 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
34723229 CACTAGAGAC
34723239 CAGTGTTA
1 CAGTGTTA
34723247 CAGTGTTA
1 CAGTGTTA
34723255 CAGTGTTA
1 CAGTGTTA
34723263 CAGTG
1 CAGTG
34723268 AGTCCCGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (8 bp):
CAGTGTTA
Found at i:34723380 original size:23 final size:23
Alignment explanation
Indices: 34723353--34723428 Score: 143
Period size: 23 Copynumber: 3.3 Consensus size: 23
34723343 AGTGTTATTG
34723353 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
34723376 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
34723399 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
34723422 ATCAGTG
1 ATCAGTG
34723429 TGGCACTTAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:34729592 original size:20 final size:20
Alignment explanation
Indices: 34729535--34729594 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
34729525 AATACTACAT
34729535 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
34729554 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
34729577 AAATATGTACATAATATA
1 AAATATGTACATAATATA
34729595 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:34729635 original size:47 final size:48
Alignment explanation
Indices: 34729550--34729696 Score: 129
Period size: 48 Copynumber: 3.0 Consensus size: 48
34729540 TGTACATATA
* * * *
34729550 TAAAAAATAAATACGTGATA-ATATTAAAAATATGTACATAATATAGTG
1 TAAAAAATAAATACATAATATATATT-AAAATATATACATAAAATAGTG
* * *
34729598 TAAAAAATACATACATAATATA-ATTAAAATATATACATAAGATAACATG
1 TAAAAAATAAATACATAATATATATTAAAATATATACATAAAAT-A-GTG
* *
34729647 TAAAATATATATATA-ATAATATAGTATTAAAGATATATGCATAAAATAGT
1 TAAAA-A-ATAAATACATAATATA-TATTAAA-ATATATACATAAAATAGT
34729697 ATAATATATA
Statistics
Matches: 81, Mismatches: 10, Indels: 13
0.78 0.10 0.12
Matches are distributed among these distances:
47 16 0.20
48 21 0.26
49 8 0.10
50 9 0.11
51 7 0.09
52 7 0.09
53 13 0.16
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (48 bp):
TAAAAAATAAATACATAATATATATTAAAATATATACATAAAATAGTG
Found at i:34729707 original size:25 final size:25
Alignment explanation
Indices: 34729650--34729708 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
34729640 TAACATGTAA
*
34729650 AATATATATATAATAATATAGTATT
1 AATATATATATAATAAAATAGTATT
* *
34729675 AA-AGATATATGCATAAAATAGTA-T
1 AATATATATAT-AATAAAATAGTATT
34729699 AATATATATA
1 AATATATATA
34729709 CGTAATATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 10 0.36
25 18 0.64
ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37
Consensus pattern (25 bp):
AATATATATATAATAAAATAGTATT
Found at i:34729781 original size:23 final size:25
Alignment explanation
Indices: 34729738--34729783 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
34729728 TATACCTAAT
34729738 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
34729763 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
34729784 ACAAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:34729860 original size:18 final size:18
Alignment explanation
Indices: 34729828--34729862 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
34729818 CGGCCACAAG
34729828 CCGGCCACCGTCCGGTCA
1 CCGGCCACCGTCCGGTCA
34729846 CCGGACCACCG-CCGGTC
1 CCGG-CCACCGTCCGGTC
34729863 GCCGTCGGCG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.11, C:0.51, G:0.29, T:0.09
Consensus pattern (18 bp):
CCGGCCACCGTCCGGTCA
Found at i:34730300 original size:30 final size:30
Alignment explanation
Indices: 34730259--34730357 Score: 153
Period size: 30 Copynumber: 3.3 Consensus size: 30
34730249 TAGGTACAAG
34730259 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
* * *
34730289 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
* *
34730319 TTGTGGTGGAGCAAGTGTGGCTACTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
34730349 TGGTGGTGG
1 TGGTGGTGG
34730358 CAAAGGCTAA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 61 1.00
ACGTcount: A:0.18, C:0.07, G:0.47, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
Found at i:34731261 original size:91 final size:88
Alignment explanation
Indices: 34731048--34731557 Score: 422
Period size: 91 Copynumber: 5.7 Consensus size: 88
34731038 AAAAACAGAA
* ** * *
34731048 ATTGAAAATAGCTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 ATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
34731112 --AAAACAAAATTTGTAAAACAGAT
65 GCAAAACAAAATTTG-AAAAAAAAT
* ** ** * * *
34731135 TTTGAAAATACCTTGGTATGTAACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTG
1 ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
34731200 CAAAGCATAAATTTTAAAAAAAAT
66 CAAAACA-AAATTTGAAAAAAAAT
*
34731224 CAATTGAAAATACCTCTGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 --ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
*
34731289 TTTG-ACAAACATAAA-TTGAAAAAAAGAA
62 TTTGCA-AAACA-AAATTTGAAAAAAA-AT
* *
34731317 ATTGAAAATACCTCAACGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
*
34731380 TGGAAAAACAAAATTTGAAAAACAGAAT
64 T-GCAAAACAAAATTTGAAAAA-A-AAT
* * * * *
34731408 -TTGAAAATACCTCAGCGTGTGA-GTCAAAGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
1 ATTGAAAATACCTCAGCGTGTGACCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
*
34731471 TTG-AAACACAGAAA-TTGAAGAACAGAA-
63 TTGCAAA-ACA-AAATTTGAA-AA-AAAAT
* * * *
34731498 ATTGAAAACACCTCAGC--GT--CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
34731558 TTGAAAGACA
Statistics
Matches: 356, Mismatches: 43, Indels: 50
0.79 0.10 0.11
Matches are distributed among these distances:
85 5 0.01
86 2 0.01
87 80 0.22
88 1 0.00
89 59 0.17
90 42 0.12
91 100 0.28
92 51 0.14
93 16 0.04
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (88 bp):
ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
CAAAACAAAATTTGAAAAAAAAT
Found at i:34731414 original size:13 final size:14
Alignment explanation
Indices: 34731382--34731414 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
34731372 GATTTTTTTG
34731382 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
34731396 GAAAAACAGAATTT
1 GAAAAACAAAATTT
34731410 GAAAA
1 GAAAA
34731415 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:34731444 original size:181 final size:177
Alignment explanation
Indices: 34731038--34732726 Score: 639
Period size: 146 Copynumber: 10.0 Consensus size: 177
34731028 ACTAGACATT
* * ** *
34731038 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* ** ** *
34731103 TTGA--TTTTT-AAAACAAAATTTGTAAAACAGATTTTGAAAATACCTTGGTATGTAACCCGAGG
66 TTGATTTTTTTGAAAACAAAA-TTGAAAAACAGAAATTGAAAATACCTCAG--TGT--CCTGAGG
* * * * *
34731165 CTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTTT
126 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTG
* *
34731215 AAAAA-A-AATCAATTGAAAATACCTCTGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATA
1 AAAAACAGAAT---TTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATA
*
34731277 TGAGTTGATTTTTTTGACAAACATAAATTGAAAAAAAGAAATTGAAAATACCTCAACGTGTCCTG
62 TGAGTTGATTTTTTTGA-AAACA-AAATTGAAAAACAGAAATTGAAAATACCTC-A-GTGTCCTG
*
34731342 AGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTG
123 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAAAAACAGAAATTTG
* * *
34731397 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAAGCTCAACTCACCACTCGCAATATGAG
1 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * * * * *
34731462 CTGATTTTTTTGAAACACAGAAATTGAAGAACAGAAATTGAAAACACCTCAGCGTCTTGAGGTTC
66 TTGATTTTTTTGAAA-ACA-AAATTGAAAAACAGAAATTGAAAATACCTCAGTGTCCTGAGGCTC
*
34731527 AACTCACCTCTCGCAATATGAGCTGATTTTTTT--------GAAA---G
129 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTG
* * **
34731565 ----ACAGAAATTGAAAATACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
34731623 GTTGA--TTTTTG---AC---------AAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCA
65 GTTGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGTGTCCTGAGGCTCA
*
34731674 ACTCACCTCTCGCAATATGAGCTGATTTTTTT----AA-AGAAA---G
130 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTG
* **
34731714 ------A-AA-TTGAAAATACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
* * *
34731768 GTTGA--TTTTTG---AC---------AAACAAAAATTGAAATTACTTCAGCGTGTCCTGAGGCT
65 GTTGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCA--GTGTCCTGAGGCT
*
34731819 CAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAA-TTG
128 CAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTG
* * * * * * *
34731868 -AAAATAGAAATGGAAAACACCTCAGCGTCT-TG---AGGTTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * * **
34731928 CTGATTTTTTTGAAACACATAAATTAAAAAAAATTAAAAACAGAATTTGAAAGGACCTCGACGTG
66 TTGATTTTTTTGAAA-ACA-AAA-T--------TGAAAAACAGAAATTGAAAATACCTC-A-GT-
* * * * * *
34731993 GGGCCCGAGACTCAACTCACCTCTCGCAATATGAGCTAATTATTTT--------GAAA---G
117 -GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTG
* * **
34732044 ----ACAGAAATTGAAAATACCTCAACGTGT---CTTGAGGCTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
* * * * * *
34732102 GTTGA--TTTTTG---AC---------AAACAAAAATTGAAATTACCTCAGCGTCTTGATGTTCA
65 GTTGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGTGTCCTGAGGCTCA
* *
34732153 ACTCACCTCTCGCAATATGAGCTAATTTTTTT--------GAAA---G
130 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTG
* * ** *
34732190 ----ACAGAAATTGAAAATACCTCAACGTGT---CTTGAGGCTCAACTCACTTCTCGCAATATGA
1 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
* *
34732248 GTTGAGTTTTTTTTAAAACATAAATT-AAAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGA
65 GTTGA-TTTTTTTGAAAACA-AAATTGAAAAACA-G-AAATTGAAAATACCTCA--GTGTCCTGA
**** * * *
34732312 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTGAAAAGCAGAATTTGTAAGGAAAAAATTG
124 GGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTTTG-A-AA-----AA-CAGAAATTTG
* * *
34732375 AAAAACAGAAATTGAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATAA
1 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
* *
34732437 GTTTATTTTTGAAAAACAAAAATT-AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTTGG
65 GTTGATTTTT------------TTGAAAA-CA-AAATTGAAAAACAGAAATTGAAAATACC-T--
* * * *
34732501 C-GTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGA--TTTTTG--AAA-AG-CA--T-
113 CAGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTG
* * *
34732556 ------A-AA-TTGAAATTACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGG
1 AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATGA
34732610 GTTGATTTTTTTGAAAAGCATAAATTGAGAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTG
65 GTTGATTTTTTTGAAAA-CA-AAATTGA-AAAACAGAAATTGAAAATACCTCA--GTGT--CCTG
* *
34732675 AGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAAT
123 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAAT
34732727 AAAAACATCG
Statistics
Matches: 1230, Mismatches: 134, Indels: 301
0.74 0.08 0.18
Matches are distributed among these distances:
145 86 0.07
146 173 0.14
147 43 0.03
148 1 0.00
149 11 0.01
150 18 0.01
151 2 0.00
152 7 0.01
154 1 0.00
156 2 0.00
159 31 0.03
160 9 0.01
161 28 0.02
162 44 0.04
163 39 0.03
164 25 0.02
165 72 0.06
167 6 0.00
168 1 0.00
169 4 0.00
170 2 0.00
171 4 0.00
173 85 0.07
174 2 0.00
175 33 0.03
176 2 0.00
177 7 0.01
178 53 0.04
179 42 0.03
180 41 0.03
181 90 0.07
182 51 0.04
183 10 0.01
184 25 0.02
185 3 0.00
186 38 0.03
187 2 0.00
188 5 0.00
189 57 0.05
192 1 0.00
196 1 0.00
197 1 0.00
199 54 0.04
200 11 0.01
201 6 0.00
202 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (177 bp):
AAAAACAGAATTTGAAAATACCTCAGCGTGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTGAAAACAAAATTGAAAAACAGAAATTGAAAATACCTCAGTGTCCTGAGGCTCAA
CTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTG
Done.