Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 112 of 290
Found at i:34731495 original size:14 final size:13
Alignment explanation
Indices: 34731471--34731507 Score: 56
Period size: 14 Copynumber: 2.7 Consensus size: 13
34731461 GCTGATTTTT
34731471 TTGAAACACAGAAA
1 TTGAAA-ACAGAAA
34731485 TTGAAGAACAGAAA
1 TTGAA-AACAGAAA
34731499 TTGAAAACA
1 TTGAAAACA
34731508 CCTCAGCGTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 4 0.18
14 17 0.77
15 1 0.05
ACGTcount: A:0.57, C:0.11, G:0.16, T:0.16
Consensus pattern (13 bp):
TTGAAAACAGAAA
Found at i:34731560 original size:87 final size:86
Alignment explanation
Indices: 34730983--34731578 Score: 455
Period size: 87 Copynumber: 6.7 Consensus size: 86
34730973 CGGCATGTGA
* ** ** * * *
34730983 TCCTGA-GCTTAACTCATTTCTCGCAATATGAATTGA-CTCTTT-AAAACTAGACATT-AAAAAC
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAC-AGAAATTGAAAAAC
*
34731044 AGAAATTGAAAATAGCTCAGCACG
65 AGAAATTGAAAATACCTCAG--CG
* * * *
34731068 TGAGCC-AAGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT-AAAACA-AAATTTGTAA
1 T---CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAA-TTGAAA
** ** *
34731128 AACAGATTTTGAAAATACCTTGGTATG
62 AACAGAAATTGAAAATACCTCAG--CG
* * * * * *
34731155 TAACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTTTAAA
1 T--CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG-AAAACAGAAA-TTGAAA
* *
34731218 AA-AAATCAATTGAAAATACCTCTGCGTG
62 AACAGA--AATTGAAAATACCTCAGC--G
* *
34731246 TGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACATAAATTGAAAA
1 T--CCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGA-AAACAGAAATTGAAAA
* *
34731311 AAAGAAATTGAAAATACCTCAACGTG
63 ACAGAAATTGAAAATACCTC-A-GCG
* *
34731337 TCCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACA-AAATTTGAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT-G-AAAACAGAAA-TTGAAAA
*
34731401 ACAGAATTTGAAAATACCTCAGCG
63 ACAGAAATTGAAAATACCTCAGCG
* *
34731425 T-GTGAGTCAAAGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACACAGAAATTGA
1 TCCTGAG-----GCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGA
* *
34731489 AGAACAGAAATTGAAAACACCTCAGCG
60 AAAACAGAAATTGAAAATACCTCAGCG
* *
34731516 TCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACAGAAATTGAAAA
34731579 TACCTCAACG
Statistics
Matches: 429, Mismatches: 51, Indels: 60
0.79 0.09 0.11
Matches are distributed among these distances:
85 3 0.01
86 6 0.01
87 124 0.29
88 32 0.07
89 53 0.12
90 44 0.10
91 101 0.24
92 49 0.11
93 17 0.04
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (86 bp):
TCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAATTGAAAAACA
GAAATTGAAAATACCTCAGCG
Found at i:34731632 original size:73 final size:73
Alignment explanation
Indices: 34731485--34731873 Score: 511
Period size: 73 Copynumber: 5.3 Consensus size: 73
34731475 AACACAGAAA
* * *
34731485 TTGAAGAACAGAAATTGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
34731548 GCTGATTTTT
65 GTTGA-TTTT
34731558 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
34731623 GTTGA-TTT
65 GTTGATTTT
* * * *
34731631 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
34731694 GCTGATTTT
65 GTTGATTTT
* *
34731703 TTTAAAGAAAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
34731768 GTTGA-TTT
65 GTTGATTTT
* * * * * *
34731776 TTGACAAACAAAAATTGAAATTACTTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
34731841 GTTGATTTTT
65 GTTGA-TTTT
34731851 TTGAAAAACAGAAATTGAAAATA
1 TTG-AAAACAGAAATTGAAAATA
34731874 GAAATGGAAA
Statistics
Matches: 278, Mismatches: 26, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
71 39 0.14
72 25 0.09
73 112 0.40
74 42 0.15
75 59 0.21
76 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (73 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTT
Found at i:34732273 original size:75 final size:75
Alignment explanation
Indices: 34732003--34732248 Score: 367
Period size: 75 Copynumber: 3.3 Consensus size: 75
34731993 GGGCCCGAGA
*
34732003 CTCAACTCACCTCTCGCAATATGAGCTAATTATTTTGAAAGACAGAAATTGAAAATACCTCAACG
1 CTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACG
34732068 TGTCTTGAGG
66 TGTCTTGAGG
* * * *
34732078 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAA-ACAAAAATTGAAATTACCTC-A-
1 CTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGA-AAGACAGAAATTGAAAATACCTCAAC
* *
34732138 GCGTCTTGATG
65 GTGTCTTGAGG
*
34732149 TTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACG
1 CTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACG
34732214 TGTCTTGAGG
66 TGTCTTGAGG
*
34732224 CTCAACTCACTTCTCGCAATATGAG
1 CTCAACTCACCTCTCGCAATATGAG
34732249 TTGAGTTTTT
Statistics
Matches: 149, Mismatches: 16, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
71 35 0.23
72 3 0.02
73 49 0.33
74 3 0.02
75 59 0.40
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (75 bp):
CTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACG
TGTCTTGAGG
Found at i:34732370 original size:90 final size:89
Alignment explanation
Indices: 34732192--34732544 Score: 291
Period size: 100 Copynumber: 3.7 Consensus size: 89
34732182 TTTGAAAGAC
* * *
34732192 AGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAGTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----
* *
34732257 TTTTTAAAACATAAATT-AAAAAAA-CG-
62 -TTTGAAAACAGAAATTAAAAAAAATCGA
34732283 A-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTG
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTG
* *
34732347 AAAAGCAGAATTTGTAAGGAAAAAATTGAAAAA
66 AAAA-CAGAA-AT-TAA--AAAAAATCG----A
* *
34732380 CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTTATTT
1 -AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--T
* *
34732445 TTGAAAAACAAAAATTAAAAGCAGAAATTGAAAAA
63 TTG-AAAACAGAAATTAAAA--A-AAATCG----A
* ** * * *
34732480 CAGAAATTAAAAATACCTTGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTT
1 -AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
34732545 TTGAAAAGCA
Statistics
Matches: 223, Mismatches: 19, Indels: 33
0.81 0.07 0.12
Matches are distributed among these distances:
85 7 0.03
86 4 0.02
87 1 0.00
88 1 0.00
89 1 0.00
90 56 0.25
91 7 0.03
92 1 0.00
97 2 0.01
98 4 0.02
99 61 0.27
100 66 0.30
101 8 0.04
102 4 0.02
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (89 bp):
AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTG
AAAACAGAAATTAAAAAAAATCGA
Found at i:34732445 original size:407 final size:399
Alignment explanation
Indices: 34731558--34732464 Score: 1093
Period size: 407 Copynumber: 2.2 Consensus size: 399
34731548 GCTGATTTTT
* * *
34731558 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
34731623 GTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCA
66 GTTTATTTTTGA-AAACAAAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCA
* *
34731688 ATATGAGCTGATTTTTTTAAAGAAAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
130 ATATGAGCTGATTTTTTGAAAGAAAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCA
* * * * *
34731753 CCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACTTCAGCGTGTCCTGAGGC
195 CCTCTCGCAATATGAGCTAATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGC
* *
34731818 TCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATAGAAATGGAA
260 TCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAAAAGAAATGGAA
* * *
34731883 AACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAACACAT
325 AACACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA---TTTTGAAACACAG
34731948 AAATTAAAAAAAA
387 AAATTAAAAAAAA
* ** * * *
34731961 TT-AAAAACAGAATTTGAAAGGACCTC-GACGTGGGGCCCGAGACTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAG-CGT--GTCCTGAGGCTCAACTCACCTCTCGCAATA
* *
34732024 TGAGCTAATTA-TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
63 TGAG-T--TTATTTTTGAAA-ACAAAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCAC
* * *
34732088 CTCTCGCAATATGAGTTGA-TTTTTGACAA-ACAA-AAATTGAAATTACCTC-A-GCGTCTTGAT
122 CTCTCGCAATATGAGCTGATTTTTTGA-AAGA-AAGAAATTGAAAATACCTCAACGCGTCTTGAG
* *
34732148 GTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGA-AAGACAGAAATTGAAAATACCTCAA
185 GCTCAACTCACCTCTCGCAATATGAGCTAA--TTTTTGACAA-ACAAAAATTGAAAATACCTCAA
* * * * *
34732212 CGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAGTTTTTTT-TAAAACATAAATTAA
247 CGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGA-TTTTTTTGAAAAACAGAAATTAA
* * *
34732276 AAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
311 AAAAA-G-AAATGGAAAACACCTCAGC--GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
*
34732341 GA-TTTGAAA-AGCAGAATTTGTAAGGAAAAAA
372 GATTTTGAAACA-CAGAA-AT-TAA--AAAAAA
*
34732372 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
34732437 GTTTATTTTTGAAAAACAAAAATT-AAAA
66 GTTTATTTTTG-AAAACAAAAATTGAAAA
34732465 GCAGAAATTG
Statistics
Matches: 428, Mismatches: 48, Indels: 52
0.81 0.09 0.10
Matches are distributed among these distances:
402 23 0.05
403 2 0.00
404 30 0.07
405 38 0.09
406 28 0.07
407 122 0.29
408 63 0.15
409 24 0.06
410 30 0.07
411 43 0.10
412 24 0.06
413 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (399 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTTATTTTTGAAAACAAAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAA
TATGAGCTGATTTTTTGAAAGAAAGAAATTGAAAATACCTCAACGCGTCTTGAGGCTCAACTCAC
CTCTCGCAATATGAGCTAATTTTTGACAAACAAAAATTGAAAATACCTCAACGTGTCCTGAGGCT
CAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTAAAAAAAGAAATGGAAA
ACACCTCAGCGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTGAAACACAGAAAT
TAAAAAAAA
Found at i:34732483 original size:14 final size:13
Alignment explanation
Indices: 34732448--34732492 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
34732438 TTTATTTTTG
*
34732448 AAAAACAAAAATT
1 AAAAACAGAAATT
*
34732461 AAAAGCAGAAATT
1 AAAAACAGAAATT
34732474 GAAAAACAGAAATT
1 -AAAAACAGAAATT
34732488 AAAAA
1 AAAAA
34732493 TACCTTGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.71, C:0.07, G:0.09, T:0.13
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:34732528 original size:100 final size:101
Alignment explanation
Indices: 34732276--34732564 Score: 397
Period size: 100 Copynumber: 2.9 Consensus size: 101
34732266 CATAAATTAA
34732276 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
34732340 TGA--TTTGAAAAGCAGAATTTGTAAGGAAAAAATTG
65 TGATTTTTGAAAAGCAAAAATTGAAAAGAAAAAATTG
*
34732375 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATAAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
34732440 TATTTTTGAAAAACAAAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAGCAAAAATTGAAAAGAAAAAATTG
* ** * * *
34732475 AAAAACAGAAATTAAAAATACCTTGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
34732540 GATTTTTGAAAAGCATAAATTGAAA
66 GATTTTTGAAAAGCAAAAATTGAAA
34732565 TTACCTCAGC
Statistics
Matches: 167, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
99 63 0.38
100 87 0.52
101 17 0.10
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAAAAATTGAAAAGAAAAAATTG
Found at i:34732595 original size:73 final size:74
Alignment explanation
Indices: 34732472--34732637 Score: 226
Period size: 73 Copynumber: 2.2 Consensus size: 74
34732462 AAAGCAGAAA
* * * ** *
34732472 TTGAAAAACAGAAATTAAAAATACCTTGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
34732537 GTTGA-TTT
66 GTTGATTTT
* * * *
34732545 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGG
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
34732610 GTTGATTTTT
66 GTTGA-TTTT
34732620 TTGAAAAGCATAAATTGA
1 TTGAAAAGCATAAATTGA
34732638 GAAAACAGAA
Statistics
Matches: 81, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
73 60 0.74
75 21 0.26
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:34732711 original size:92 final size:91
Alignment explanation
Indices: 34732547--34732717 Score: 281
Period size: 92 Copynumber: 1.9 Consensus size: 91
34732537 GTTGATTTTT
* * * *
34732547 GAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGGGT
1 GAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGAGT
34732612 TGATTTTTTTGAAAAGCATAAATTGA
66 TGATTTTTTTGAAAAGCATAAATTGA
34732638 GAAAA-CAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGA
1 GAAAAGCAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCCCAACTCACCTCTCGCAATATGA
34732702 GTTGATTTTTTTGAAA
64 GTTGATTTTTTTGAAA
34732718 GACAGAAATA
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
90 24 0.32
91 5 0.07
92 45 0.61
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (91 bp):
GAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCCCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTGAAAAGCATAAATTGA
Found at i:34733595 original size:41 final size:43
Alignment explanation
Indices: 34733543--34733629 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 43
34733533 TGTATTAATC
34733543 AAGACGCCC-TTTTCGAGTTTTCACCTTGA-TCCCTTTTTTTT
1 AAGACGCCCTTTTTCGAGTTTTCACCTTGATTCCCTTTTTTTT
* * * **
34733584 AAGATGCCCTTTTTCGGGTTTTCATCTTGATTTTCTTTTTTTT
1 AAGACGCCCTTTTTCGAGTTTTCACCTTGATTCCCTTTTTTTT
34733627 AAG
1 AAG
34733630 CATAATTTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 8 0.21
42 18 0.46
43 13 0.33
ACGTcount: A:0.15, C:0.21, G:0.14, T:0.51
Consensus pattern (43 bp):
AAGACGCCCTTTTTCGAGTTTTCACCTTGATTCCCTTTTTTTT
Found at i:34739407 original size:16 final size:15
Alignment explanation
Indices: 34739381--34739415 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
34739371 TGATGTGAAT
34739381 AATATAAAATATTAA
1 AATATAAAATATTAA
*
34739396 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
34739412 AATA
1 AATA
34739416 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:34739586 original size:20 final size:20
Alignment explanation
Indices: 34739529--34739635 Score: 63
Period size: 22 Copynumber: 5.0 Consensus size: 20
34739519 AATACTACAT
34739529 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
34739548 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
34739571 AAATATGTACATAATATAGTGTAA
1 AAATATGTACATAATATA----AA
**
34739595 AAATACATACATAATATAATTA
1 AAATATGTACATAATATAA--A
* *
34739617 AAATATATACATAAGATAA
1 AAATATGTACATAATATAA
34739636 CATGTAAATA
Statistics
Matches: 68, Mismatches: 10, Indels: 17
0.72 0.11 0.18
Matches are distributed among these distances:
19 8 0.12
20 8 0.12
22 20 0.29
23 14 0.21
24 18 0.26
ACGTcount: A:0.57, C:0.06, G:0.07, T:0.31
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:34739595 original size:24 final size:23
Alignment explanation
Indices: 34739566--34739773 Score: 102
Period size: 25 Copynumber: 8.5 Consensus size: 23
34739556 ACGTGATAAT
*
34739566 ATTAAAAATATGTACATAATATA
1 ATTAAAAATATATACATAATATA
* *
34739589 GTGTAAAAATACATACATAATATA
1 AT-TAAAAATATATACATAATATA
*
34739613 ATT-AAAATATATACATAAGATAA
1 ATTAAAAATATATACATAATAT-A
*
34739636 CATGTAAATATATATATATAAATAATATA
1 -AT-T-AA-A-A-ATATATACATAATATA
* *
34739665 GTATTAAAGATATATACATAAAATA
1 --ATTAAAAATATATACATAATATA
* * *
34739690 GTATAATATATATATACGTAATATAGA
1 AT-TAA-AAATATATACATAATAT--A
* * *
34739717 ATT-TAGA-ATATACCTAATAT-
1 ATTAAAAATATATACATAATATA
*
34739737 ATTAAAAGA-ATATATATAATATA
1 ATTAAAA-ATATATACATAATATA
34739760 ATATAAGAAATATA
1 AT-TAA-AAATATA
34739774 ATAATAACAA
Statistics
Matches: 141, Mismatches: 24, Indels: 38
0.69 0.12 0.19
Matches are distributed among these distances:
20 3 0.02
21 1 0.01
22 28 0.20
23 18 0.13
24 31 0.22
25 34 0.24
26 1 0.01
27 4 0.03
28 3 0.02
29 3 0.02
30 15 0.11
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (23 bp):
ATTAAAAATATATACATAATATA
Found at i:34739626 original size:22 final size:22
Alignment explanation
Indices: 34739529--34739661 Score: 78
Period size: 24 Copynumber: 5.9 Consensus size: 22
34739519 AATACTACAT
*
34739529 AAATATGTACAT-ATATAA--A
1 AAATATATACATAATATAATTA
* * *
34739548 AAATAAATACGTGATA-ATATTAA
1 AAATATATACATAATATA-ATT-A
* *
34739571 AAATATGTACATAATATAGTGTAA
1 AAATATATACATAATATAAT-T-A
*
34739595 AAATACATACATAATATAATTA
1 AAATATATACATAATATAATTA
*
34739617 AAATATATACATAAGATAACATGTA
1 AAATATATACATAATAT-A-AT-TA
*
34739642 AATATATATATATAA-ATAAT
1 AA-ATATATACATAATATAAT
34739662 ATAGTATTAA
Statistics
Matches: 89, Mismatches: 14, Indels: 18
0.74 0.12 0.15
Matches are distributed among these distances:
19 10 0.11
20 4 0.04
22 16 0.18
23 18 0.20
24 24 0.27
25 6 0.07
26 11 0.12
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.32
Consensus pattern (22 bp):
AAATATATACATAATATAATTA
Found at i:34739672 original size:15 final size:14
Alignment explanation
Indices: 34739640--34739705 Score: 57
Period size: 14 Copynumber: 4.7 Consensus size: 14
34739630 AGATAACATG
34739640 TAAATATATATATA
1 TAAATATATATATA
34739654 TAAATA-ATATAGTA
1 TAAATATATATA-TA
* *
34739668 TTAAAGATATATACA
1 -TAAATATATATATA
34739683 TAAA-ATAGTATA-A
1 TAAATATA-TATATA
*
34739696 TATATATATA
1 TAAATATATA
34739706 CGTAATATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
13 14 0.32
14 19 0.43
15 6 0.14
16 5 0.11
ACGTcount: A:0.56, C:0.02, G:0.05, T:0.38
Consensus pattern (14 bp):
TAAATATATATATA
Found at i:34739749 original size:22 final size:22
Alignment explanation
Indices: 34739721--34739779 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
34739711 TATAGAATTT
* *
34739721 AGAATATACCTAATATATTAAA
1 AGAATATACATAATATAATAAA
* *
34739743 AGAATATATATAATATAATATA
1 AGAATATACATAATATAATAAA
34739765 AGAAATATA-ATAATA
1 AG-AATATACATAATA
34739780 ACAAAAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 26 0.81
23 6 0.19
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.32
Consensus pattern (22 bp):
AGAATATACATAATATAATAAA
Found at i:34740270 original size:18 final size:18
Alignment explanation
Indices: 34740247--34740300 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
34740237 ACAAGTGGTG
34740247 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
34740265 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
34740277 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
34740295 GTGGAG
1 GTGGAG
34740301 TTTGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:34740283 original size:30 final size:30
Alignment explanation
Indices: 34740242--34740340 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
34740232 TAGGTACAAG
34740242 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
34740272 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
34740302 TTGTGGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
34740332 TGGTGGTGG
1 TGGTGGTGG
34740341 CAAAGGCTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.18, C:0.06, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:34740898 original size:21 final size:21
Alignment explanation
Indices: 34740869--34740908 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
34740859 ATCCTCGATC
34740869 AGCTCCACTGCAACTTCAATT
1 AGCTCCACTGCAACTTCAATT
* *
34740890 AGCTTCACTGTAACTTCAA
1 AGCTCCACTGCAACTTCAA
34740909 GGATATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.30, G:0.10, T:0.30
Consensus pattern (21 bp):
AGCTCCACTGCAACTTCAATT
Found at i:34741321 original size:92 final size:90
Alignment explanation
Indices: 34741030--34741562 Score: 447
Period size: 90 Copynumber: 5.9 Consensus size: 90
34741020 TTAAAAACAG
* * *
34741030 AAATTGAAAATAGCTCAGCACGTG-AGCC-AATGCTCAACTCACTTCTCGCAATATGAGTTGA--
1 AAATTGAAAATACCTCAG--CGTGTA-CCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
34741091 TTTTT-AAAACA-AAATTTGTAAAACAGAT
63 TTTTTGAAAACATAAA-TTG-AAAAAAAAT
* * ** ** *
34741119 --TTTGAAAATACCTCGGTATGTAACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TT
1 AAATTGAAAATACCTCAGCGTGT-ACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
** *
34741180 TTTGCAAAGTATAAATTTAAAAAAAAT
65 TTTG-AAAACATAAATTGAAAAAAAAT
* * * *
34741207 CAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGATTTGATTTT
1 AAATTGAAAATACCTCAGCGTGT-ACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
34741272 TTTGACAAACATAAATTGAAAAAAAAT
65 TTTGA-AAACATAAATTGAAAAAAAAT
* * *
34741299 AAATTGAAAATACCTCAACGTGT-CCTAATGCTGAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
34741363 TTGGAAAAACA-AAATTTG-AAAAACAG
66 TT-G-AAAACATAAA-TTGAAAAAAAAT
* * * *
34741389 AATTTGAAAATACCTCAGCGTGTGA-GTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTT
1 AAATTGAAAATACCTCAGCGTGT-ACCT-AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* * * *
34741453 TTTTGAAACACAGAAATTG-AAGAACAG
64 TTTTGAAA-ACATAAATTGAAAAAAAAT
* * * * *
34741480 AAATAGAAAACACCTCAGC--GT-CTTAAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 AAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
34741542 TTGAAAGAC-TGAAATTGAAAA
66 TTGAAA-ACAT-AAATTGAAAA
34741563 TACCTCAACG
Statistics
Matches: 372, Mismatches: 50, Indels: 45
0.80 0.11 0.10
Matches are distributed among these distances:
85 2 0.01
86 2 0.01
87 98 0.26
88 10 0.03
89 8 0.02
90 127 0.34
91 41 0.11
92 84 0.23
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (90 bp):
AAATTGAAAATACCTCAGCGTGTACCTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGAAAACATAAATTGAAAAAAAAT
Found at i:34741398 original size:13 final size:14
Alignment explanation
Indices: 34741366--34741398 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
34741356 GATTTTTTTG
34741366 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
34741380 GAAAAACAGAATTT
1 GAAAAACAAAATTT
34741394 GAAAA
1 GAAAA
34741399 TACCTCAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:34741412 original size:182 final size:176
Alignment explanation
Indices: 34741146--34741634 Score: 487
Period size: 182 Copynumber: 2.8 Consensus size: 176
34741136 ATGTAACCCG
* * * * *
34741146 AGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGTATAAATTTAAAAAAAATCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAA-AACAAATTT-GAAAAAA--A
* *
34741209 ATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGATTTGATTTTTT
62 ATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
* * * * *
34741274 TGACAAACATAAATTGAAAAAAAATAAATTGAAAATACCTCAACGTGTCCTA
127 TGACAAACAAAAATTGAAAAAAAAGAAATAGAAAACACCTC-A-GCGTCCTA
* *
34741326 ATGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAAATTTGAAAAACAGAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAAC-AAATTTGAAAAA-A-AA
* * * *
34741391 TTTGAAAATACCTCAGCGTGTGA-GTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
63 -TTGAAAATACCTCAGCGTGTGACCT-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * * *
34741455 TTGA-AACACAGAAATTG-AAGAACAGAAATAGAAAACACCTCAGCGTCTTA
126 TTGACAA-ACAAAAATTGAAAAAAAAGAAATAGAAAACACCTCAGCGTCCTA
* * *
34741505 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT-GAAAGAC-----TG-----AAATTG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAATTTGAAAAAAAATTG
* *
34741559 AAAATACCTCAACGTGT--CTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAC
66 AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC
34741620 AAACAAAAATTGAAA
131 AAACAAAAATTGAAA
34741635 TTACCTCAGC
Statistics
Matches: 266, Mismatches: 33, Indels: 39
0.79 0.10 0.12
Matches are distributed among these distances:
160 16 0.06
161 4 0.02
162 30 0.11
163 1 0.00
164 19 0.07
165 2 0.01
166 1 0.00
172 2 0.01
178 6 0.02
179 41 0.15
180 30 0.11
181 30 0.11
182 84 0.32
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (176 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGAAAAACAAATTTGAAAAAAAATTG
AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAC
AAACAAAAATTGAAAAAAAAGAAATAGAAAACACCTCAGCGTCCTA
Found at i:34741542 original size:87 final size:86
Alignment explanation
Indices: 34741009--34741562 Score: 385
Period size: 87 Copynumber: 6.2 Consensus size: 86
34740999 TTGACTCTTT
* * * *
34741009 AAAACTAGACATT-AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGC-CAATGCTCAACTCAC
1 AAAAC-AGAAATTGAAAAACAGAAATTGAAAATACCTCAG--CGT---CTTAAGGCTCAACTCAC
* *
34741072 TTCTCGCAATATGAGTTGA--TTTTT-
60 CTCTCGCAATATGAGCTGATTTTTTTG
* ** *
34741096 AAAACA-AAATTTGTAAAACAGATTTTGAAAATACCTC-G-GTATGTAACCCGAGGCTCAACTCA
1 AAAACAGAAA-TTGAAAAACAGAAATTGAAAATACCTCAGCGTCT-T-A----AGGCTCAACTCA
* *
34741158 CCTCTCGTAATATGAGTTGA--TTTTTG
59 CCTCTCGCAATATGAGCTGATTTTTTTG
** * * * * * *
34741184 CAAAGTATAAATTTAAAAA-AAATCAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCA
1 -AAAACAGAAATTGAAAAACAGA--AATTGAAAATACCTCAGC--GT--CTTAAGGCTCAACTCA
**
34741248 CCTCTCGCAATATGATTTGATTTTTTTG
59 CCTCTCGCAATATGAGCTGATTTTTTTG
* * * * * * *
34741276 ACAAACATAAATTGAAAAAAAATAAATTGAAAATACCTCAACGTGTCCTAATGCTGAACTCACCT
1 A-AAACAGAAATTG-AAAAACAGAAATTGAAAATACCTC-A-GCGTCTTAAGGCTCAACTCACCT
*
34741341 CTCGCAATATGAGTTGATTTTTTTGG
62 CTCGCAATATGAGCTGATTTTTTT-G
* *
34741367 AAAAACA-AAATTTGAAAAACAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCAC
1 -AAAACAGAAA-TTGAAAAACAGAAATTGAAAATACCTCAGCGTCT---T-AAGGCTCAACTCAC
*
34741431 CACTCGCAATATGAGCTGATTTTTTTG
60 CTCTCGCAATATGAGCTGATTTTTTTG
* * * *
34741458 AAACACAGAAATTGAAGAACAGAAATAGAAAACACCTCAGCGTCTTAAGGTTCAACTCACCTCTC
1 AAA-ACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTCTTAAGGCTCAACTCACCTCTC
34741523 GCAATATGAGCTGATTTTTTTG
65 GCAATATGAGCTGATTTTTTTG
*
34741545 AAAGACTGAAATTGAAAA
1 AAA-ACAGAAATTGAAAA
34741563 TACCTCAACG
Statistics
Matches: 379, Mismatches: 52, Indels: 72
0.75 0.10 0.14
Matches are distributed among these distances:
83 3 0.01
85 2 0.01
86 4 0.01
87 113 0.30
88 6 0.02
89 11 0.03
90 112 0.30
91 45 0.12
92 72 0.19
93 5 0.01
94 5 0.01
95 1 0.00
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (86 bp):
AAAACAGAAATTGAAAAACAGAAATTGAAAATACCTCAGCGTCTTAAGGCTCAACTCACCTCTCG
CAATATGAGCTGATTTTTTTG
Found at i:34741599 original size:75 final size:74
Alignment explanation
Indices: 34741469--34741858 Score: 481
Period size: 73 Copynumber: 5.3 Consensus size: 74
34741459 AACACAGAAA
* * * * *
34741469 TTGAAGAACAGAAATAGAAAACACCTC-A-GCGTCTTAAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
34741532 GCTGATTTTT
65 GTTGATTTTT
*
34741542 TTGAAAGACTGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
34741607 GTTGA--TTT
65 GTTGATTTTT
* * * * *
34741615 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGG
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
34741678 GCTGATTTTT
65 GTTGATTTTT
*
34741688 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCGCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
34741753 GTTGA--TTT
65 GTTGATTTTT
* * * * * * *
34741761 TTGACAAATAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGG
1 TTGA-AAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
34741826 GTTGATTTTT
65 GTTGATTTTT
34741836 TTGAAAAACAGAAATTGAAAATA
1 TTG-AAAACAGAAATTGAAAATA
34741859 GAAATGGAAG
Statistics
Matches: 272, Mismatches: 32, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
71 36 0.13
72 4 0.01
73 133 0.49
74 6 0.02
75 92 0.34
76 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:34741755 original size:146 final size:146
Alignment explanation
Indices: 34741491--34741858 Score: 628
Period size: 146 Copynumber: 2.5 Consensus size: 146
34741481 AATAGAAAAC
* * *
34741491 ACCTCAGCGTCTTAAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACTGAAA
1 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGGGCTGATTTTTTTGAAAGACAGAAA
*
34741556 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
66 TTGAAAATACCTCAACGTGTCTTGAGGCGCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
34741621 AACAAAAATTGAAATT
131 AACAAAAATTGAAATT
34741637 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGGGCTGATTTTTTTGAAAGACAGAAA
1 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGGGCTGATTTTTTTGAAAGACAGAAA
34741702 TTGAAAATACCTCAACGTGTCTTGAGGCGCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
66 TTGAAAATACCTCAACGTGTCTTGAGGCGCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
*
34741767 AATAAAAATTGAAATT
131 AACAAAAATTGAAATT
* * * * *
34741783 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGGGTTGATTTTTTTGAAAAACAGA
1 ACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGGGCTGATTTTTTTGAAAGACAGA
34741848 AATTGAAAATA
64 AATTGAAAATA
34741859 GAAATGGAAG
Statistics
Matches: 210, Mismatches: 10, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
146 149 0.71
148 61 0.29
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (146 bp):
ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGGGCTGATTTTTTTGAAAGACAGAAA
TTGAAAATACCTCAACGTGTCTTGAGGCGCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
AACAAAAATTGAAATT
Found at i:34742296 original size:146 final size:148
Alignment explanation
Indices: 34741949--34742321 Score: 448
Period size: 146 Copynumber: 2.5 Consensus size: 148
34741939 AAAAAAAATT
* ** * * * *
34741949 AAAAAA-AGAATTTGAAAGGACCTCGACGTGTGGCCCGAGACTCAACTCACCTCTTGCAATATGA
1 AAAAAATAGAAATTGAAAATACCTCAACGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGA
*
34742013 GTTGATTCTTTTTGAAAAGCAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTC
64 GTTGA---TTTTTGAAAAGCAAAAATTGAAAATACCTCAGCA-GTCCCGAGGCTCAACTCACCTC
*
34742078 TCGCAATATGAGTTGATTTTTTTG
125 TCGCAATATGAGCTGATTTTTTTG
* * * * * *
34742102 ATAAAAATAGAATTTGAAATTATCTCAGCGTGTCCTGAGGCTTAACTCACCTCTCACAATATGAG
1 A-AAAAATAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* ** *
34742167 TTGATTTTTGACAAA-CAAAAATTGAAATTACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGC
65 TTGATTTTTGA-AAAGCAAAAATTGAAAATACCTCAGCAGTCCCGAGGCTCAACTCACCTCTCGC
34742230 AATATGAGCTGATTTTTTTG
129 AATATGAGCTGATTTTTTTG
* * *
34742250 -AAAGATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGT
1 AAAAAATAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
34742314 TGATTTTT
66 TGATTTTT
34742322 TTTGAAACAT
Statistics
Matches: 192, Mismatches: 25, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
146 63 0.33
148 42 0.22
150 27 0.14
151 3 0.02
153 32 0.17
154 5 0.03
155 20 0.10
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (148 bp):
AAAAAATAGAAATTGAAAATACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTGAAAAGCAAAAATTGAAAATACCTCAGCAGTCCCGAGGCTCAACTCACCTCTCGCAA
TATGAGCTGATTTTTTTG
Found at i:34742532 original size:13 final size:14
Alignment explanation
Indices: 34742511--34742569 Score: 86
Period size: 14 Copynumber: 4.4 Consensus size: 14
34742501 TTGATTTTTC
34742511 AAAAACAGAAATT-
1 AAAAACAGAAATTG
*
34742524 AAAAGCAGAAATTG
1 AAAAACAGAAATTG
*
34742538 AAAAGCAGAAATTG
1 AAAAACAGAAATTG
34742552 AAAAACAGAAATT-
1 AAAAACAGAAATTG
34742565 AAAAA
1 AAAAA
34742570 TACCTCGGCG
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
13 17 0.40
14 26 0.60
ACGTcount: A:0.66, C:0.07, G:0.14, T:0.14
Consensus pattern (14 bp):
AAAAACAGAAATTG
Found at i:34742610 original size:114 final size:114
Alignment explanation
Indices: 34742410--34742637 Score: 312
Period size: 114 Copynumber: 2.0 Consensus size: 114
34742400 AGTTGATTTG
* * * * * * * *
34742410 AAAAGCAGAATTTGTAAGGCAAAAATTGAAAAATAGAAATTGAAAATATCTCAGCGTATCCTGAG
1 AAAAGCAGAAATTGAAAAGCAAAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTACCCCGAG
*
34742475 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCAAAAACAGAAATT
66 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTCAAAAACAGAAATT
* * *
34742524 AAAAGCAGAAATTGAAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAG
1 AAAAGCAGAAATTGAAAAGCAAAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTACCCCGAG
* * * *
34742589 GCTCAGCTCACCTCTCACAATATGAGTTGATTTTTGAAAAGCATAAATT
66 GCTCAACTCACCTCTCACAATATGAGTTGATTTTTCAAAAACAGAAATT
34742638 GAAATTACCT
Statistics
Matches: 98, Mismatches: 16, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
114 98 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (114 bp):
AAAAGCAGAAATTGAAAAGCAAAAATTGAAAAACAGAAATTAAAAATACCTCAGCGTACCCCGAG
GCTCAACTCACCTCTCACAATATGAGTTGATTTTTCAAAAACAGAAATT
Found at i:34742672 original size:73 final size:74
Alignment explanation
Indices: 34742549--34742717 Score: 214
Period size: 73 Copynumber: 2.3 Consensus size: 74
34742539 AAAGCAGAAA
* * * * *
34742549 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCACAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
34742614 GTTGA-TTT
66 GTTGATTTT
* * ** * * *
34742622 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAGTATGG
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
34742687 GTTGATTTTT
66 GTTGA-TTTT
34742697 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
34742718 AAAAGGAAAT
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
73 58 0.72
75 23 0.28
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTTT
Found at i:34750613 original size:18 final size:18
Alignment explanation
Indices: 34750590--34750643 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
34750580 ACAAGTGGTG
34750590 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
34750608 GT-G-G--AGT-AGG-TA
1 GTGGAGCAAGTGTGGCTA
34750620 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
34750638 GTGGAG
1 GTGGAG
34750644 TTTGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 4 0.14
16 4 0.14
17 3 0.11
18 10 0.36
ACGTcount: A:0.22, C:0.07, G:0.48, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:34750626 original size:30 final size:30
Alignment explanation
Indices: 34750585--34750683 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
34750575 TAGGTACAAG
34750585 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
34750615 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
34750645 TTGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
34750675 TGGTGGTGG
1 TGGTGGTGG
34750684 CAAAAGCTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.17, C:0.06, G:0.48, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:34750673 original size:18 final size:18
Alignment explanation
Indices: 34750618--34750673 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
34750608 GTGGAGTAGG
*
34750618 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAATTGTGGC
34750636 TAGTGGAG---TT-T-G-
1 TAGTGGAGCAATTGTGGC
*
34750648 TGGTGGAGCAATTGTGGC
1 TAGTGGAGCAATTGTGGC
34750666 TAGTGGAG
1 TAGTGGAG
34750674 TTGGTGGTGG
Statistics
Matches: 29, Mismatches: 3, Indels: 12
0.66 0.07 0.27
Matches are distributed among these distances:
12 7 0.24
13 1 0.03
14 1 0.03
15 3 0.10
16 1 0.03
17 1 0.03
18 15 0.52
ACGTcount: A:0.20, C:0.07, G:0.45, T:0.29
Consensus pattern (18 bp):
TAGTGGAGCAATTGTGGC
Found at i:34752741 original size:21 final size:22
Alignment explanation
Indices: 34752715--34752757 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
34752705 ATTAACTGAT
**
34752715 TATTTTTATTTTAT-TTTTAAA
1 TATTTTTAAATTATATTTTAAA
34752736 TATTTTTAAATTATATTTTAAA
1 TATTTTTAAATTATATTTTAAA
34752758 GAAGTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
TATTTTTAAATTATATTTTAAA
Found at i:34752742 original size:11 final size:11
Alignment explanation
Indices: 34752713--34752757 Score: 56
Period size: 11 Copynumber: 4.1 Consensus size: 11
34752703 TAATTAACTG
*
34752713 ATTATTTTTAT
1 ATTATTTTTAA
*
34752724 TTTATTTTTAA
1 ATTATTTTTAA
34752735 A-TATTTTTAA
1 ATTATTTTTAA
34752745 ATTATATTTTAA
1 ATTAT-TTTTAA
34752757 A
1 A
34752758 GAAGTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
10 10 0.34
11 12 0.41
12 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTATTTTTAA
Found at i:34764189 original size:21 final size:20
Alignment explanation
Indices: 34764148--34764197 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
34764138 ATGTGTTATA
34764148 AAAATAAACATATTATGAAATT
1 AAAATAAA-ATATTATGAAA-T
* *
34764170 AAAATAAAATTTTATTAAAT
1 AAAATAAAATATTATGAAAT
34764190 -AAATAAAA
1 AAAATAAAA
34764198 AGCATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 8 0.31
20 1 0.04
21 9 0.35
22 8 0.31
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (20 bp):
AAAATAAAATATTATGAAAT
Found at i:34764369 original size:31 final size:29
Alignment explanation
Indices: 34764303--34764377 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 29
34764293 AGTGTGTTTT
* *
34764303 TATTTTGGTCACTCAAGTTTAAAAATTTT
1 TATTTTAGTCACTCAAGTTTAAAAATTTA
*
34764332 TATTTTAGTCACT-AACGTTGTCAAAATTTAA
1 TATTTTAGTCACTCAA-GTT-TAAAAATTT-A
*
34764363 TATTTTAGACACTCA
1 TATTTTAGTCACTCA
34764378 TCCTTTAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
28 2 0.05
29 15 0.39
30 8 0.21
31 12 0.32
32 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.09, T:0.44
Consensus pattern (29 bp):
TATTTTAGTCACTCAAGTTTAAAAATTTA
Found at i:34765229 original size:15 final size:16
Alignment explanation
Indices: 34765203--34765237 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
34765193 GAGATTTAAA
34765203 AAAATATATTATTTAT
1 AAAATATATTATTTAT
*
34765219 AAAAT-TATTATTTTT
1 AAAATATATTATTTAT
34765234 AAAA
1 AAAA
34765238 ATAAATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 13 0.72
16 5 0.28
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AAAATATATTATTTAT
Found at i:34765238 original size:16 final size:17
Alignment explanation
Indices: 34765196--34765240 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
34765186 TATTTTTGAG
*
34765196 ATTTAAAAAAATATATT
1 ATTTATAAAAATATATT
34765213 ATTTAT-AAAAT-TATT
1 ATTTATAAAAATATATT
*
34765228 ATTTTTAAAAATA
1 ATTTATAAAAATA
34765241 AATTTTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 9 0.38
16 10 0.42
17 5 0.21
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTTATAAAAATATATT
Found at i:34765256 original size:20 final size:20
Alignment explanation
Indices: 34765220--34765258 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
34765210 ATTATTTATA
*
34765220 AAATTATTATTTTTAAAAAT
1 AAATTATTATTTATAAAAAT
34765240 AAATT-TTATGTTATAAAAA
1 AAATTATTAT-TTATAAAAA
34765259 AGAAAAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (20 bp):
AAATTATTATTTATAAAAAT
Found at i:34766508 original size:15 final size:15
Alignment explanation
Indices: 34766488--34766519 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
34766478 ATTTTAATCC
34766488 TTAATATTATTAAAA
1 TTAATATTATTAAAA
34766503 TTAATATTATTAAAA
1 TTAATATTATTAAAA
34766518 TT
1 TT
34766520 CATTATTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAATATTATTAAAA
Found at i:34771479 original size:13 final size:13
Alignment explanation
Indices: 34771463--34771494 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
34771453 GACGGCGACT
34771463 GGCGGCGACATAC
1 GGCGGCGACATAC
34771476 GGCGGCGACATAC
1 GGCGGCGACATAC
*
34771489 GACGGC
1 GGCGGC
34771495 TTGCTCGCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.22, C:0.31, G:0.41, T:0.06
Consensus pattern (13 bp):
GGCGGCGACATAC
Found at i:34772007 original size:9 final size:9
Alignment explanation
Indices: 34771990--34772067 Score: 50
Period size: 9 Copynumber: 8.4 Consensus size: 9
34771980 TTTCATTTTC
34771990 ATTATTTAAT
1 ATTA-TTAAT
34772000 ATTATTAAT
1 ATTATTAAT
*
34772009 ATTATCT-CT
1 ATTAT-TAAT
*
34772018 AATATTAAT
1 ATTATTAAT
* * * *
34772027 CTAATCACT
1 ATTATTAAT
*
34772036 ATTATTATT
1 ATTATTAAT
*
34772045 ATTATTATT
1 ATTATTAAT
34772054 ATTATTATAT
1 ATTATTA-AT
34772064 ATTA
1 ATTA
34772068 GTATATATTT
Statistics
Matches: 52, Mismatches: 13, Indels: 6
0.73 0.18 0.08
Matches are distributed among these distances:
8 1 0.02
9 41 0.79
10 10 0.19
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.55
Consensus pattern (9 bp):
ATTATTAAT
Found at i:34772043 original size:3 final size:3
Alignment explanation
Indices: 34772035--34772085 Score: 61
Period size: 3 Copynumber: 17.0 Consensus size: 3
34772025 ATCTAATCAC
*
34772035 TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TAG TAT ATAT T-T T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TAT TAT
34772080 TAT TAT
1 TAT TAT
34772086 ATATGTATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 4 0.09
3 33 0.77
4 6 0.14
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:34772216 original size:41 final size:40
Alignment explanation
Indices: 34772148--34772334 Score: 113
Period size: 41 Copynumber: 4.7 Consensus size: 40
34772138 TTTAATATTT
**
34772148 TTATTA-TATTA-TATTATATTAGCTTTTTGTATTTCAATA
1 TTATTATTATTATTATTAT-TTATATTTTTGTATTTCAATA
* * **
34772187 TTATTATTATTATTATTATTGTATATTTTTATATATGTATA
1 TTATTATTATTATTATTATT-TATATTTTTGTATTTCAATA
* *
34772228 TGTATATATTTATACATAGTATTATTT-T-TTTAAT-TACTTT-AAT-
1 T-TAT-TA-TTAT---TATTATTATTTATATTT-TTGTA-TTTCAATA
* * *
34772271 TTAATATTTTTATTA-TATTTA-CTTTTTGTATTTCAATA
1 TTATTATTATTATTATTATTTATATTTTTGTATTTCAATA
*
34772309 TTATTATTATTATTATTATTAATATT
1 TTATTATTATTATTATTATTTATATT
34772335 AGTGTATATG
Statistics
Matches: 112, Mismatches: 18, Indels: 35
0.68 0.11 0.21
Matches are distributed among these distances:
36 9 0.08
37 12 0.11
38 13 0.12
39 11 0.10
40 11 0.10
41 23 0.21
42 5 0.04
43 3 0.03
44 11 0.10
45 4 0.04
46 1 0.01
47 9 0.08
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (40 bp):
TTATTATTATTATTATTATTTATATTTTTGTATTTCAATA
Found at i:34772218 original size:22 final size:23
Alignment explanation
Indices: 34772188--34772240 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 23
34772178 ATTTCAATAT
*
34772188 TATTATTATTATTAT-TAT-TGTA
1 TATTTTTATTA-TATGTATATGTA
34772210 TATTTTTA-TATATGTATATGTA
1 TATTTTTATTATATGTATATGTA
*
34772232 TATATTTAT
1 TATTTTTAT
34772241 ACATAGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 3 0.12
21 5 0.19
22 18 0.69
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (23 bp):
TATTTTTATTATATGTATATGTA
Found at i:34772249 original size:131 final size:130
Alignment explanation
Indices: 34772038--34772421 Score: 424
Period size: 131 Copynumber: 2.9 Consensus size: 130
34772028 TAATCACTAT
* * * * *
34772038 TATTATTATTATTATTATTATTATATATTAGTATATATTTTTTATTATATATGTATAAGTATATA
1 TATTATCAATATTATTATTATTAT-TATTA-T-TGTA-TATTT-TTATATATGTAT-A-TGTATA
34772103 TATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTATATT
59 TATTTATACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATT-T-TT
**
34772168 AGCT-TTT-TG
122 -G-TATTTCAA
34772177 TATT-TCAATATTATTATTATTATTATTATTGTATATTTTTATATATGTATATGTATATATTTAT
1 TATTATCAATATTATTATTATTATTATTATTGTATATTTTTATATATGTATATGTATATATTTAT
*
34772241 ACATAGTATTATTTTTTTAATTACTTTAATTTAATATTTTTATTATATT-TACTTTTTGTATTTC
66 ACATAGTATTA-TTTTTTAATTACTTTATTTTAATATTTTTATTATATTATA-TTTTTGTATTTC
34772305 AA
129 AA
* * * * * *
34772307 TATTATTATTATTATTATTATTAATATTAGTGTATATGTTTAT-TATATATATG--TATATTTAT
1 TATTATCAATATTATTATTATTATTATTATTGTATATTTTTATATATGTATATGTATATATTTAT
* * * * *
34772369 ATATAGTACTA-TTTTTAGTTACTTTATTTTAACATTATTATTATATTATATTT
66 ACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTT
34772422 GCTTTTTTTT
Statistics
Matches: 219, Mismatches: 20, Indels: 25
0.83 0.08 0.09
Matches are distributed among these distances:
126 35 0.16
127 2 0.01
128 19 0.09
129 4 0.02
130 15 0.07
131 59 0.27
132 39 0.18
133 12 0.05
134 4 0.02
135 3 0.01
136 1 0.00
137 5 0.02
138 17 0.08
139 4 0.02
ACGTcount: A:0.33, C:0.03, G:0.04, T:0.60
Consensus pattern (130 bp):
TATTATCAATATTATTATTATTATTATTATTGTATATTTTTATATATGTATATGTATATATTTAT
ACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTTTTGTATTTCAA
Found at i:34772354 original size:21 final size:22
Alignment explanation
Indices: 34772324--34772364 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
34772314 ATTATTATTA
34772324 TTATTAATAT-TAGTGTATATGT
1 TTATTAATATATA-TGTATATGT
34772346 TTATT-ATATATATGTATAT
1 TTATTAATATATATGTATAT
34772365 TTATATATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (22 bp):
TTATTAATATATATGTATATGT
Found at i:34772359 original size:15 final size:14
Alignment explanation
Indices: 34772339--34772382 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 14
34772329 AATATTAGTG
*
34772339 TATATGTTTATTATA
1 TATATGTATATT-TA
34772354 TATATGTATATTTA
1 TATATGTATATTTA
34772368 TATATAGTACTATTT
1 TATAT-GTA-TATTT
34772383 TTAGTTACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 7 0.27
15 14 0.54
16 5 0.19
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (14 bp):
TATATGTATATTTA
Found at i:34772368 original size:16 final size:16
Alignment explanation
Indices: 34772339--34772382 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
34772329 AATATTAGTG
*
34772339 TATATGTTTA-TTATA
1 TATATGTATATTTATA
34772354 TATATGTATATTTATA
1 TATATGTATATTTATA
34772370 TATA-GTACTATTT
1 TATATGTA-TATTT
34772383 TTAGTTACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 12 0.46
16 14 0.54
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (16 bp):
TATATGTATATTTATA
Found at i:34772427 original size:131 final size:130
Alignment explanation
Indices: 34772045--34772428 Score: 405
Period size: 122 Copynumber: 2.9 Consensus size: 130
34772035 TATTATTATT
34772045 ATTATTATTATTATTATATATTAGTATATATTTTTTATTATATATGTATAAGTATATATATTTAT
1 ATTATTATTATTATTA-ATATTAGT-TATA--TTTTATTATATA--TAT--G---ATATATTTAT
*
34772110 ACATAGTATTATTTTTTAATTACTTTATTTTAATATTTTTATTATATTATATTATATTAGCTTTT
55 ACATAGTATTATTTTTTAATTACTTTATTTTAA-A---TTA-T-TATTATATTATATTTGCTTTT
34772175 TGTATTTCAATATTATT
114 TGTATTTCAATATTATT
* * *
34772192 ATTATTATTATTATT-GTA-TA-TT-T-TTATA-TATGTATATGTATATATTTATACATAGTATT
1 ATTATTATTATTATTAATATTAGTTATATTTTATTATATATATG-ATATATTTATACATAGTATT
* *
34772251 ATTTTTTTAATTACTTTAATTT-AA-TATT-TT-TATTATATTTACTTTTTGTATTTCAATATTA
65 A-TTTTTTAATTACTTTATTTTAAATTATTATTATATTATATTTGCTTTTTGTATTTCAATATTA
34772312 TT
129 TT
* *
34772314 ATTATTATTATTATTAATATTAGTGTATATGTTTATTATATATATG-TATATTTATATATAGTAC
1 ATTATTATTATTATTAATATTAGT-TATAT-TTTATTATATATATGATATATTTATACATAGTAT
*
34772378 TA-TTTTTAGTTACTTTATTTTAACATTATTATTATATTATATTTGCTTTTT
64 TATTTTTTAATTACTTTATTTTAA-ATTATTATTATATTATATTTGCTTTTT
34772429 TTTTTGTATT
Statistics
Matches: 209, Mismatches: 14, Indels: 44
0.78 0.05 0.16
Matches are distributed among these distances:
122 46 0.22
123 4 0.02
124 3 0.01
125 2 0.01
126 20 0.10
127 2 0.01
128 20 0.10
129 7 0.03
130 12 0.06
131 39 0.19
132 19 0.09
133 1 0.00
135 3 0.01
137 5 0.02
138 4 0.02
141 1 0.00
142 1 0.00
143 1 0.00
144 2 0.01
145 2 0.01
147 15 0.07
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (130 bp):
ATTATTATTATTATTAATATTAGTTATATTTTATTATATATATGATATATTTATACATAGTATTA
TTTTTTAATTACTTTATTTTAAATTATTATTATATTATATTTGCTTTTTGTATTTCAATATTATT
Found at i:34780608 original size:104 final size:104
Alignment explanation
Indices: 34780428--34780651 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
34780418 TGTATATAAA
** * *
34780428 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
34780493 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
34780532 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
34780596 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
34780636 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
34780652 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:34780716 original size:26 final size:26
Alignment explanation
Indices: 34780681--34780732 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
34780671 AAATGAAAAG
* *
34780681 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
34780707 GGGGTTGCTAAGTGATGATTCCCCGA
1 GGGGTTGCTAAGTGATGATTCCCCGA
34780733 TTCAGTGGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.15, C:0.21, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGATGATTCCCCGA
Found at i:34780719 original size:70 final size:72
Alignment explanation
Indices: 34780570--34780720 Score: 243
Period size: 72 Copynumber: 2.1 Consensus size: 72
34780560 TCATTGGTGG
* *
34780570 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
34780635 GAGGGGT
66 GAGGGGT
***
34780642 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATT-CCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
34780705 GAGGGGT
66 GAGGGGT
34780712 TGCTAAGTG
1 TGCTAAGTG
34780721 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
70 20 0.27
71 24 0.32
72 30 0.41
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:34787691 original size:104 final size:104
Alignment explanation
Indices: 34787511--34787734 Score: 378
Period size: 104 Copynumber: 2.2 Consensus size: 104
34787501 TGTATATAAA
** * *
34787511 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
34787576 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
34787615 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
34787679 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
34787719 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
34787735 GATATCCATT
Statistics
Matches: 113, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
104 112 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:34787786 original size:71 final size:72
Alignment explanation
Indices: 34787653--34787804 Score: 243
Period size: 71 Copynumber: 2.1 Consensus size: 72
34787643 TCATTGGTGG
* *
34787653 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
34787718 GAGGGGT
66 GAGGGAT
***
34787725 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
34787789 GAGGGAT
66 GAGGGAT
34787796 TGCTAAGTG
1 TGCTAAGTG
34787805 ATGATTCCCC
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
71 44 0.59
72 30 0.41
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGAT
Found at i:34803574 original size:11 final size:11
Alignment explanation
Indices: 34803543--34803580 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
34803533 TACTACATAC
*
34803543 TTATTTAAAAA
1 TTATTTACAAA
*
34803554 ATATTT-CAAA
1 TTATTTACAAA
34803564 TTATTTACAAA
1 TTATTTACAAA
34803575 TTATTT
1 TTATTT
34803581 TTTAAAACCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 8 0.35
11 15 0.65
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (11 bp):
TTATTTACAAA
Found at i:34806061 original size:46 final size:44
Alignment explanation
Indices: 34805947--34806070 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 44
34805937 TGTGTGTGCT
*
34805947 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAAACGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--GCATTATGAAACGCC
* *
34805994 AGTGTAAGACATGTTTAGGACATGCATCGGCATTGA-GACGAGA-GCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATT-ATGA--A-ACGCC
34806040 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
34806071 TACGAGATGT
Statistics
Matches: 68, Mismatches: 5, Indels: 9
0.83 0.06 0.11
Matches are distributed among these distances:
44 6 0.09
45 1 0.01
46 34 0.50
47 27 0.40
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTATGAAACGCC
Found at i:34809890 original size:15 final size:15
Alignment explanation
Indices: 34809857--34809911 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
34809847 GGTATCGTGA
*
34809857 TTGGATTTTCTTGT-T
1 TTGGA-TTTCTTATAT
34809872 TTGGATTTCTT-TAT
1 TTGGATTTCTTATAT
34809886 GTTGGATTT-TTATAT
1 -TTGGATTTCTTATAT
34809901 TCTGGATTTCT
1 T-TGGATTTCT
34809912 CCGTTATGGA
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
13 1 0.03
14 10 0.29
15 23 0.66
16 1 0.03
ACGTcount: A:0.13, C:0.07, G:0.18, T:0.62
Consensus pattern (15 bp):
TTGGATTTCTTATAT
Found at i:34812623 original size:50 final size:48
Alignment explanation
Indices: 34812458--34812683 Score: 145
Period size: 47 Copynumber: 4.7 Consensus size: 48
34812448 TATGTATGTT
* * *
34812458 CTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCAC--AT-TATGAAATG
1 CTAGTGTAAGACATGTCTGGGACATGGCATCGG-CACGGATGT-CGATA-G
* *
34812505 CCAGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGAGATGT-GTTAG
1 CTAGTGTAAGACATGTCTGGGACATGGCATCGGC-ACG-GATGTCGATAG
* *
34812553 -TA--G-AAGACCATGTCTAGGACATGGCATCGGCACGGATGTGCGAGAG
1 CTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCACGGATGT-CGATAG
* * ** *
34812599 CTAGTGTAAGAGCATGTCTGGGACATGGCGTCAGC-CTCAATTTTC-ATAG
1 CTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCAC-GGA-TGTCGATAG
34812648 TCTA-TGTAAGACCATGTCTGGGACATGGCATCGGCA
1 -CTAGTGTAAGA-CATGTCTGGGACATGGCATCGGCA
34812684 TTATACCCTA
Statistics
Matches: 143, Mismatches: 19, Indels: 31
0.74 0.10 0.16
Matches are distributed among these distances:
44 9 0.06
45 17 0.12
46 12 0.08
47 35 0.24
48 1 0.01
49 35 0.24
50 31 0.22
51 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (48 bp):
CTAGTGTAAGACATGTCTGGGACATGGCATCGGCACGGATGTCGATAG
Found at i:34821263 original size:3 final size:3
Alignment explanation
Indices: 34821177--34821247 Score: 90
Period size: 3 Copynumber: 23.7 Consensus size: 3
34821167 TATTTATCGA
* * *
34821177 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA- TATT TAC TAC TAT TAA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT
*
34821222 TAT TAT TAT TAT CAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
34821248 CCGTATATTT
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
2 2 0.03
3 56 0.93
4 2 0.03
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:34821315 original size:27 final size:25
Alignment explanation
Indices: 34821285--34821362 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 25
34821275 TATACACTCT
34821285 TTATATATAGTATTATTTTTAATATTA
1 TTATAT-TA-TATTATTTTTAATATTA
*
34821312 TTAT-TTAT-TTATTTTTAACA-TA
1 TTATATTATATTATTTTTAATATTA
34821334 -TATATGTATA-TATTTATGTAATATTA
1 TTATAT-TATATTATTT-T-TAATATTA
34821360 TTA
1 TTA
34821363 ATAATTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 14
0.72 0.03 0.24
Matches are distributed among these distances:
21 3 0.07
22 3 0.07
23 19 0.45
24 2 0.05
25 6 0.14
26 3 0.07
27 6 0.14
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (25 bp):
TTATATTATATTATTTTTAATATTA
Found at i:34821323 original size:23 final size:23
Alignment explanation
Indices: 34821297--34821362 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 23
34821287 ATATATAGTA
*
34821297 TTATTTTTAATATTATTATTTAT
1 TTATTTTTAATATTATTATGTAT
*
34821320 TTATTTTTAACA-TATATATGTAT
1 TTATTTTTAATATTAT-TATGTAT
*
34821343 ATATTTATGTAATATTATTA
1 TTATTT-T-TAATATTATTA
34821363 ATAATTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
22 3 0.09
23 22 0.63
24 1 0.03
25 6 0.17
26 3 0.09
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (23 bp):
TTATTTTTAATATTATTATGTAT
Found at i:34821514 original size:23 final size:23
Alignment explanation
Indices: 34821482--34821537 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
34821472 TCATATGTAT
34821482 ATATT-TTATGTACATACTTTTA
1 ATATTATTATGTACATACTTTTA
** *
34821504 ATATTATTATGTATTTATTTTTA
1 ATATTATTATGTACATACTTTTA
34821527 ATA-TA-TATGTA
1 ATATTATTATGTA
34821538 TACATTTAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.20
22 7 0.23
23 17 0.57
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (23 bp):
ATATTATTATGTACATACTTTTA
Found at i:34821544 original size:21 final size:23
Alignment explanation
Indices: 34821482--34821558 Score: 61
Period size: 23 Copynumber: 3.4 Consensus size: 23
34821472 TCATATGTAT
* * *
34821482 ATATT-TTATGTACATACTTTTA
1 ATATTATTATGTATACATTTTTA
**
34821504 ATATTATTATGTATTTATTTTTA
1 ATATTATTATGTATACATTTTTA
*
34821527 ATA-TA-TATGTATACATTTAGGTA
1 ATATTATTATGTATACATTT--TTA
34821550 ATATTATTA
1 ATATTATTA
34821559 ATAGTCGTTC
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
21 11 0.25
22 7 0.16
23 22 0.50
24 2 0.05
25 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (23 bp):
ATATTATTATGTATACATTTTTA
Found at i:34821694 original size:25 final size:25
Alignment explanation
Indices: 34821589--34821747 Score: 144
Period size: 26 Copynumber: 6.2 Consensus size: 25
34821579 AATATGTATA
*
34821589 TATATTATGTAAATA-TTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* *
34821613 TATATTATTTATATATTTTTCTTACATAT
1 TATATTATGTATATA--TTT-TTA-ATAC
*
34821642 TATCTTATGTATATATTTTTAATAAC
1 TATATTATGTATATATTTTTAAT-AC
*
34821668 TATATTATGTATGTATTTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* * *
34821693 TATATTACGTACATACTTTTAATA-
1 TATATTATGTATATATTTTTAATAC
* *
34821717 TCATTATTATGTATAAATTTTCAATA-
1 T-A-TATTATGTATATATTTTTAATAC
34821743 TATAT
1 TATAT
34821748 GCGTATATTT
Statistics
Matches: 110, Mismatches: 17, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
24 17 0.15
25 26 0.24
26 43 0.39
27 5 0.05
28 3 0.03
29 16 0.15
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAATAC
Found at i:34821808 original size:11 final size:11
Alignment explanation
Indices: 34821792--34821832 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
34821782 TTATTTCTAA
34821792 TATGTATATAT
1 TATGTATATAT
34821803 TATGTATATAT
1 TATGTATATAT
* *
34821814 T-TTTA-ATAC
1 TATGTATATAT
34821823 TATGTATATA
1 TATGTATATA
34821833 CATTTTATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 4 0.16
10 6 0.24
11 15 0.60
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (11 bp):
TATGTATATAT
Found at i:34825791 original size:22 final size:22
Alignment explanation
Indices: 34825766--34825820 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
34825756 ATTCATGACT
*
34825766 AACATTCATTTGTCATTTATTC
1 AACATTCATTTGTCATTCATTC
34825788 AACATTCATTTGTCATTCATTC
1 AACATTCATTTGTCATTCATTC
*
34825810 ATTCATTCATT
1 A-ACATTCATT
34825821 GCATGTATAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
22 22 0.73
23 8 0.27
ACGTcount: A:0.27, C:0.20, G:0.04, T:0.49
Consensus pattern (22 bp):
AACATTCATTTGTCATTCATTC
Found at i:34834228 original size:14 final size:14
Alignment explanation
Indices: 34834209--34834238 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
34834199 CGCTGAGGTA
34834209 TTTTCAATTTATGT
1 TTTTCAATTTATGT
34834223 TTTTCAATTTATGT
1 TTTTCAATTTATGT
34834237 TT
1 TT
34834239 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:34834283 original size:85 final size:85
Alignment explanation
Indices: 34834070--34834983 Score: 602
Period size: 85 Copynumber: 10.8 Consensus size: 85
34834060 AATTTCTATT
* * ** * *
34834070 TTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGGGCCTTAGGACACGTTGAGGTATTTTTAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAA
* *
34834135 --TA---TTCTCAATTTCTG
66 TTTATGTTTTTCAATTTATG
*
34834150 TTTGTCAAAAATCAACTCATATTGCAAGA-GTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTC
1 -TT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTC
34834214 AATTTATGTTTTTCAATTTATG
64 AATTTATGTTTTTCAATTTATG
*
34834236 TTTCAAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAA
*
34834301 TTTCTGTTTTTCAATTTATG
66 TTTATGTTTTTCAATTTATG
* ** * *
34834321 TTTCAAAAGTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGACTCACATGCTGAGGTATGTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG--GGACACGCTGAGGTATTTTC
* *
34834386 AATTTCTATTTTTTTTAATTTATG
64 AA-TT-TATGTTTTTCAATTTATG
* * *
34834410 TTTTTCAAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTT
1 --TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCTGAGGTATTT
* *
34834475 TCAAATTT-TGTTTTTCAAATTCTG
62 TC-AATTTATGTTTTTCAATTTATG
** ** ** * *** * * * * *
34834499 TTTTTAATTTCTATTTTTCAAAAAAC-A-ACGCAT-ATTATGAG---AGGTG--A-GTTGAGCCT
1 TTTCAAAAATC-A--ACTCATATTGCGAGA-G-GTGAGT-TGAGCCTCGG-GACACGCTGAG-GT
** * * *
34834555 CATTCACACGTTTAGGTATTTTCAATTTCTG
58 -ATTTTCA-ATTTATGT-TTTTCAATTTATG
* ** * * *
34834586 TCTTTCAAAAAATCAACTCATATTACGAGAATTTAGTTGAGCCTCAGGG-CATGTTGAGGTAATT
1 --TTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTGAGGT-ATT
* **
34834650 TT-AATTTCTGTTCATCAA---A--
61 TTCAATTTATGTTTTTCAATTTATG
*** * * ** * * * *
34834669 -AAAAAAAATCAAATCATACTGCGAGATATGAGTTGATCCTTGGCTCACATGCTGAGGTATTTTC
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTC
* * *
34834733 AATTTCTATTTTTCAATTTCTG
64 AATTTATGTTTTTCAATTTATG
* *
34834755 TTCGTC-AAAATCAACTCATATGGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
1 TT--TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTC
*
34834819 AATTTTTGTTTTTCAATTTATG
64 AATTTATGTTTTTCAATTTATG
*
34834841 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGGTATTTTCAA
1 TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAA
**
34834906 TTTCCGTTTTTC-A---A--
66 TTTATGTTTTTCAATTTATG
* * *
34834920 ----AAAAATCAAGCTCATATTGCGAGAGGTAAGTTGAGCCTCAGGGCACAAGCCGAGGTATTTT
1 TTTCAAAAATCAA-CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGG-ACACGCTGAGGTATTTT
34834981 CAA
63 CAA
34834984 AAAATCAACT
Statistics
Matches: 661, Mismatches: 116, Indels: 115
0.74 0.13 0.13
Matches are distributed among these distances:
75 9 0.01
76 27 0.04
77 3 0.00
78 20 0.03
79 30 0.05
80 5 0.01
81 58 0.09
82 24 0.04
83 6 0.01
84 29 0.04
85 173 0.26
86 51 0.08
87 50 0.08
88 44 0.07
89 41 0.06
90 17 0.03
91 66 0.10
92 8 0.01
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36
Consensus pattern (85 bp):
TTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAA
TTTATGTTTTTCAATTTATG
Found at i:34834313 original size:14 final size:14
Alignment explanation
Indices: 34834294--34834323 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
34834284 CGCTGAGGTA
*
34834294 TTTTCAATTTCTGT
1 TTTTCAATTTATGT
34834308 TTTTCAATTTATGT
1 TTTTCAATTTATGT
34834322 TT
1 TT
34834324 CAAAAGTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.10, G:0.07, T:0.67
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:34834502 original size:13 final size:14
Alignment explanation
Indices: 34834472--34834520 Score: 64
Period size: 14 Copynumber: 3.6 Consensus size: 14
34834462 TGCCGAGGTA
*
34834472 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
34834486 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
* *
34834500 TTTT-AATTTCTAT
1 TTTTCAAATTCTGT
34834513 TTTTCAAA
1 TTTTCAAA
34834521 AAACAACGCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 11 0.37
14 19 0.63
ACGTcount: A:0.24, C:0.10, G:0.04, T:0.61
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:34834656 original size:74 final size:73
Alignment explanation
Indices: 34834500--34834660 Score: 180
Period size: 74 Copynumber: 2.2 Consensus size: 73
34834490 CAAATTCTGT
* * * * *
34834500 TTTTAATTTCTATTTTTCAAAAAACAACGCATATTATGAGAGGTGAGTTGAGCCTCATTCACACG
1 TTTTAATTTCTGTCTTTCAAAAAACAACGCATATTACGAGAAGTGAGTTGAGCCTCATGCACACG
*
34834565 TTTAGGTA
66 TTGAGGTA
* * * **
34834573 TTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTACGAGAATTTAGTTGAGCCTCA-GGGCA
1 TTTT-AATTTCTGTCTTTCAAAAAA-CAACGCATATTACGAGAAGTGAGTTGAGCCTCATGCACA
*
34834637 TGTTGAGGTAA
64 CGTTGAGGT-A
34834648 TTTTAATTTCTGT
1 TTTTAATTTCTGT
34834661 TCATCAAAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
73 4 0.05
74 36 0.49
75 33 0.45
ACGTcount: A:0.30, C:0.15, G:0.16, T:0.39
Consensus pattern (73 bp):
TTTTAATTTCTGTCTTTCAAAAAACAACGCATATTACGAGAAGTGAGTTGAGCCTCATGCACACG
TTGAGGTA
Found at i:34834833 original size:14 final size:14
Alignment explanation
Indices: 34834814--34834843 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
34834804 CGCTGAGGTA
*
34834814 TTTTCAATTTTTGT
1 TTTTCAATTTATGT
34834828 TTTTCAATTTATGT
1 TTTTCAATTTATGT
34834842 TT
1 TT
34834844 CAAAAATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.70
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:34836962 original size:3 final size:3
Alignment explanation
Indices: 34836885--34836946 Score: 72
Period size: 3 Copynumber: 20.7 Consensus size: 3
34836875 TTATCGATGA
* * *
34836885 TAT TAT TAT TAT TAT TAT TA- TATT TAC TAC TAT TAA TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
*
34836930 TAT CAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TA
34836947 CCGTATATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
2 2 0.04
3 47 0.92
4 2 0.04
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:34837014 original size:27 final size:25
Alignment explanation
Indices: 34836984--34837084 Score: 74
Period size: 23 Copynumber: 4.2 Consensus size: 25
34836974 TATACACTCT
34836984 TTATATATAGTATTATTTTTAATATTA
1 TTATAT-TA-TATTATTTTTAATATTA
*
34837011 TTAT-TTAT-TTATTTTTAACA-TA
1 TTATATTATATTATTTTTAATATTA
34837033 -TATATGTATA-TATTTATGTAATATTA
1 TTATAT-TATATTATTT-T-TAATATTA
* *
34837059 TTA-A-TA-ATTGTTTTTAACATTA
1 TTATATTATATTATTTTTAATATTA
34837081 TTAT
1 TTAT
34837085 TATTTCTTAG
Statistics
Matches: 61, Mismatches: 4, Indels: 22
0.70 0.05 0.25
Matches are distributed among these distances:
21 3 0.05
22 13 0.21
23 21 0.34
24 8 0.13
25 6 0.10
26 4 0.07
27 6 0.10
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (25 bp):
TTATATTATATTATTTTTAATATTA
Found at i:34837058 original size:48 final size:45
Alignment explanation
Indices: 34836985--34837078 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 45
34836975 ATACACTCTT
* *
34836985 TATATATAGTATTATTTTTAATATTATTATTTATTTATTTTTAACA
1 TATATATAGTATTATTTTTAATATTATTA-ATAATTATTTTTAACA
*
34837031 TATATAT-GTATATATTTATGTAATATTATTAATAATTGTTTTTAACA
1 TATATATAGTAT-TATTT-T-TAATATTATTAATAATTATTTTTAACA
34837078 T
1 T
34837079 TATTATTATT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
45 4 0.10
46 12 0.29
47 15 0.36
48 11 0.26
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.57
Consensus pattern (45 bp):
TATATATAGTATTATTTTTAATATTATTAATAATTATTTTTAACA
Found at i:34837228 original size:23 final size:22
Alignment explanation
Indices: 34837197--34837252 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
34837187 TCATATGTAT
*
34837197 ATATTTTATGTACATACTTTTA
1 ATATATTATGTACATACTTTTA
** *
34837219 ATAGTATTATGTATTTATTTTTA
1 ATA-TATTATGTACATACTTTTA
34837242 ATATA-TATGTA
1 ATATATTATGTA
34837253 TACATTTAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 6 0.21
22 5 0.17
23 18 0.62
ACGTcount: A:0.34, C:0.04, G:0.07, T:0.55
Consensus pattern (22 bp):
ATATATTATGTACATACTTTTA
Found at i:34837259 original size:21 final size:23
Alignment explanation
Indices: 34837214--34837259 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
34837204 ATGTACATAC
**
34837214 TTTTAATAGTATTATGTATTTAT
1 TTTTAATAGTATTATGTATACAT
34837237 TTTTAATA-TA-TATGTATACAT
1 TTTTAATAGTATTATGTATACAT
34837258 TT
1 TT
34837260 AGGTAGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 11 0.52
22 2 0.10
23 8 0.38
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (23 bp):
TTTTAATAGTATTATGTATACAT
Found at i:34837409 original size:25 final size:25
Alignment explanation
Indices: 34837304--34837462 Score: 126
Period size: 26 Copynumber: 6.2 Consensus size: 25
34837294 AATATGTATA
* * *
34837304 TATATTACGTAAATATTTAT-ATAC
1 TATATTATGTATATATTTTTAATAC
* *
34837328 TATATTATTTATATATTTTTCTTACATAT
1 TATATTATGTATATA--TTT-TTA-ATAC
*
34837357 TATCTTATGTATATATTTTTAATAAC
1 TATATTATGTATATATTTTTAAT-AC
*
34837383 TATATTATGTATGTATTTTTAATAC
1 TATATTATGTATATATTTTTAATAC
* * *
34837408 TATATTACGTACATACTTTTAATA-
1 TATATTATGTATATATTTTTAATAC
* *
34837432 TCATTATTATGTATAAATTTTCAATA-
1 T-A-TATTATGTATATATTTTTAATAC
34837458 TATAT
1 TATAT
34837463 GCGTATATTT
Statistics
Matches: 108, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
24 16 0.15
25 26 0.24
26 46 0.43
27 4 0.04
29 16 0.15
ACGTcount: A:0.36, C:0.08, G:0.04, T:0.53
Consensus pattern (25 bp):
TATATTATGTATATATTTTTAATAC
Found at i:34837522 original size:11 final size:11
Alignment explanation
Indices: 34837506--34837546 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
34837496 TTATTTCTAA
34837506 TATGTATATAT
1 TATGTATATAT
34837517 TATGTATATAT
1 TATGTATATAT
* *
34837528 T-TTTA-ATAC
1 TATGTATATAT
34837537 TATGTATATA
1 TATGTATATA
34837547 CATTTTATTC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
9 4 0.16
10 6 0.24
11 15 0.60
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (11 bp):
TATGTATATAT
Found at i:34838905 original size:27 final size:27
Alignment explanation
Indices: 34838882--34838986 Score: 133
Period size: 27 Copynumber: 3.9 Consensus size: 27
34838872 GTCACCAGAT
* *
34838882 ACAGATAT-TGTGGTAGAGCTACCAAA
1 ACAGATATATGTGGCAGAGCCACCAAA
*
34838908 ACAGATATATGTGGCAGAGCCAGCAAA
1 ACAGATATATGTGGCAGAGCCACCAAA
*
34838935 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATATATGTGGCAGAGCCACCAAA
* *
34838962 TCAGATA-ACTGTGGCATAGCCACCA
1 ACAGATATA-TGTGGCAGAGCCACCA
34838987 GGACGCTTCC
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
26 9 0.13
27 61 0.87
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATATATGTGGCAGAGCCACCAAA
Found at i:34847322 original size:8 final size:8
Alignment explanation
Indices: 34847306--34847335 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
34847296 CTCAAAATAC
34847306 CGGCTTTT
1 CGGCTTTT
*
34847314 CGGCATTT
1 CGGCTTTT
34847322 CGGCTTTT
1 CGGCTTTT
34847330 CGGCTT
1 CGGCTT
34847336 GTGCCGATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.03, C:0.27, G:0.27, T:0.43
Consensus pattern (8 bp):
CGGCTTTT
Found at i:34848549 original size:26 final size:26
Alignment explanation
Indices: 34848513--34848620 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
34848503 TGAAATTGTC
34848513 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
34848539 ATCATTGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
34848565 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
34848591 ATCATGGAACATTTATCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
34848617 ATCA
1 ATCA
34848621 ATTTGTATCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:34856162 original size:31 final size:31
Alignment explanation
Indices: 34856124--34856185 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
34856114 CACGAACTCG
*
34856124 GACTCAACTCAACAAGTTTGGACATTCGCAT
1 GACTCAACTCAACAAGTTCGGACATTCGCAT
* *
34856155 GACTCAACTCAACGAGTTCGGATATTCGCAT
1 GACTCAACTCAACAAGTTCGGACATTCGCAT
34856186 CCATAAGTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (31 bp):
GACTCAACTCAACAAGTTCGGACATTCGCAT
Found at i:34856222 original size:46 final size:46
Alignment explanation
Indices: 34856155--34856315 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 46
34856145 ACATTCGCAT
34856155 GACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCA
1 GACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCA
* ** * * * *
34856201 GACTCAACTCAACGAGCTCGGATGCCTAGTTACTCTCA-CA---AATTCA
1 GACTCAACTCAACGAGTTCGGAT-ATTCG-CA-TC-CATAAGTGAACTCA
** *
34856247 GACTCAACTCAACGAGTTCGGACGTTCGCATCCATAAGTGAACTCG
1 GACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCA
*
34856293 GACTCAACTCAACGAGTTTGGAT
1 GACTCAACTCAACGAGTTCGGAT
34856316 GCTCAAATAT
Statistics
Matches: 89, Mismatches: 18, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 73 0.82
47 2 0.02
48 1 0.01
49 3 0.03
50 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
GACTCAACTCAACGAGTTCGGATATTCGCATCCATAAGTGAACTCA
Found at i:34874234 original size:21 final size:23
Alignment explanation
Indices: 34874191--34874234 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
34874181 AACACTACTC
*
34874191 AAATATGTACATGGGACAATATA
1 AAATATATACATGGGACAATATA
34874214 AAATATATACAT-GGA-AATATA
1 AAATATATACATGGGACAATATA
34874235 TAAGTAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 3 0.15
23 11 0.55
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.27
Consensus pattern (23 bp):
AAATATATACATGGGACAATATA
Found at i:34874235 original size:23 final size:23
Alignment explanation
Indices: 34874191--34874247 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 23
34874181 AACACTACTC
* *
34874191 AAATATGTACATGGGACAATATA
1 AAATATATACATGGGAAAATATA
34874214 AAATATATACAT-GGAAATATATA
1 AAATATATACATGGGAAA-ATATA
34874237 AGTAATATATA
1 A--AATATATA
34874248 ACTAATAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 4 0.14
23 17 0.59
25 8 0.28
ACGTcount: A:0.53, C:0.05, G:0.12, T:0.30
Consensus pattern (23 bp):
AAATATATACATGGGAAAATATA
Found at i:34874321 original size:20 final size:20
Alignment explanation
Indices: 34874296--34874343 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
34874286 AGATATATGA
34874296 ATATAATATAATAGGAAAAT
1 ATATAATATAATAGGAAAAT
**
34874316 ATATAATATAATATTAAAAT
1 ATATAATATAATAGGAAAAT
34874336 ATAATAAT
1 AT-ATAAT
34874344 GTAACATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.35
Consensus pattern (20 bp):
ATATAATATAATAGGAAAAT
Found at i:34874352 original size:21 final size:20
Alignment explanation
Indices: 34874296--34874355 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
34874286 AGATATATGA
* **
34874296 ATATAATATAATAGGAAAAT
1 ATATAATATAACATTAAAAT
*
34874316 ATATAATATAATATTAAAAT
1 ATATAATATAACATTAAAAT
*
34874336 ATAATAATGTAACATTAAAA
1 AT-ATAATATAACATTAAAA
34874356 AATACATGAT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
20 20 0.57
21 15 0.43
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.33
Consensus pattern (20 bp):
ATATAATATAACATTAAAAT
Found at i:34874433 original size:26 final size:24
Alignment explanation
Indices: 34874385--34874433 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
34874375 GTATAGTATT
*
34874385 AAGAATACACATATATAATATATG
1 AAGAATACACATATATAAAATATG
*
34874409 AAGAATATACATAATACTAAAATAT
1 AAGAATACACAT-ATA-TAAAATAT
34874434 TTAGGTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 11 0.52
25 3 0.14
26 7 0.33
ACGTcount: A:0.57, C:0.08, G:0.06, T:0.29
Consensus pattern (24 bp):
AAGAATACACATATATAAAATATG
Found at i:34874555 original size:3 final size:3
Alignment explanation
Indices: 34874547--34874582 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
34874537 AAGCATAAAC
*
34874547 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TGA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
34874583 CATTGAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:34874713 original size:3 final size:3
Alignment explanation
Indices: 34874682--34874738 Score: 69
Period size: 3 Copynumber: 18.3 Consensus size: 3
34874672 ATATATTTAC
* *
34874682 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
*
34874729 ATA CTA ATA A
1 ATA ATA ATA A
34874739 CATAAAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
3 40 0.87
4 6 0.13
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:34884368 original size:24 final size:24
Alignment explanation
Indices: 34884341--34884406 Score: 66
Period size: 27 Copynumber: 2.7 Consensus size: 24
34884331 ATTTACATAG
34884341 TAATATATAAAAGATATAT-GAATA
1 TAATATATAAAA-ATATATAGAATA
*
34884365 TAATATAATAGGAAAATATATATAATA
1 TAATAT-ATA--AAAATATATAGAATA
34884392 TAATAT-T-AAAATATA
1 TAATATATAAAAATATA
34884407 ATAATGTAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
22 8 0.22
24 6 0.16
25 4 0.11
26 6 0.16
27 13 0.35
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (24 bp):
TAATATATAAAAATATATAGAATA
Found at i:34884387 original size:22 final size:22
Alignment explanation
Indices: 34884362--34884411 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
34884352 AGATATATGA
34884362 ATATAATATAATAGGAAAATAT
1 ATATAATATAATAGGAAAATAT
**
34884384 ATATAATATAATATTAAAATAT
1 ATATAATATAATAGGAAAATAT
34884406 A-ATAAT
1 ATATAAT
34884412 GTAACATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (22 bp):
ATATAATATAATAGGAAAATAT
Found at i:34884424 original size:22 final size:22
Alignment explanation
Indices: 34884362--34884423 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
34884352 AGATATATGA
* **
34884362 ATATAATATAATAGGAAAATAT
1 ATATAATATAACATTAAAATAT
*
34884384 ATATAATATAATATTAAAATAT
1 ATATAATATAACATTAAAATAT
*
34884406 A-ATAATGTAACATTAAAA
1 ATATAATATAACATTAAAA
34884424 AATACATGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
21 15 0.42
22 21 0.58
ACGTcount: A:0.60, C:0.02, G:0.05, T:0.34
Consensus pattern (22 bp):
ATATAATATAACATTAAAATAT
Found at i:34884501 original size:26 final size:24
Alignment explanation
Indices: 34884453--34884501 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
34884443 GTATAGTATT
*
34884453 AAGAATACACATATATAATATATG
1 AAGAATACACATATATAAAATATG
*
34884477 AAGAATATACATATTACTAAAATAT
1 AAGAATACACATA-TA-TAAAATAT
34884502 TTAGGTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 2 0.10
26 7 0.33
ACGTcount: A:0.55, C:0.08, G:0.06, T:0.31
Consensus pattern (24 bp):
AAGAATACACATATATAAAATATG
Found at i:34884623 original size:3 final size:3
Alignment explanation
Indices: 34884615--34884659 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
34884605 AAGCATAAAC
*
34884615 TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
34884660 CATTGAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:34884780 original size:23 final size:25
Alignment explanation
Indices: 34884754--34884803 Score: 77
Period size: 23 Copynumber: 2.1 Consensus size: 25
34884744 TGTATATATT
34884754 TACATAATAAAAATA-T-ATACTAA
1 TACATAATAAAAATAGTAATACTAA
*
34884777 TACATAATAATAATAGTAATACTAA
1 TACATAATAAAAATAGTAATACTAA
34884802 TA
1 TA
34884804 ATACTAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 14 0.58
24 1 0.04
25 9 0.38
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (25 bp):
TACATAATAAAAATAGTAATACTAA
Found at i:34884788 original size:3 final size:3
Alignment explanation
Indices: 34884757--34884813 Score: 51
Period size: 3 Copynumber: 18.3 Consensus size: 3
34884747 ATATATTTAC
* * * *
34884757 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA GTA ATA CTA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
*
34884804 ATA CTA ATA A
1 ATA ATA ATA A
34884814 CATAAAAATA
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
3 36 0.86
4 6 0.14
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:34888445 original size:46 final size:45
Alignment explanation
Indices: 34888298--34888467 Score: 152
Period size: 46 Copynumber: 3.6 Consensus size: 45
34888288 TGTGTGAGCT
* * *
34888298 AGTGTAAGACATGTCTAGGACATGCATCGGCCACATT-ATGA-GA-GTC
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CATTGA-GACAAGGCC
* *
34888344 GGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGACAA-GGCC
*
34888392 AGTGTAAGACATGTCTGGGACATGCAAT-GGCCTTGAGACGTAA-GCC
1 AGTGTAAGACATGTCTGGGACATGC-ATCGGCATTGAGAC--AAGGCC
34888438 AGTGTAAGACATGTCTGGGACATGGCATCG
1 AGTGTAAGACATGTCTGGGACAT-GCATCG
34888468 ACTTGTGATA
Statistics
Matches: 105, Mismatches: 8, Indels: 21
0.78 0.06 0.16
Matches are distributed among these distances:
45 6 0.06
46 49 0.47
47 32 0.30
48 18 0.17
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACAAGGCC
Found at i:34888484 original size:46 final size:47
Alignment explanation
Indices: 34888345--34888506 Score: 159
Period size: 46 Copynumber: 3.5 Consensus size: 47
34888335 ATGAGAGTCG
* * * *
34888345 GTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGACAAGGGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGAGACATGAGCCA
* * * *
34888393 GTGTAAGA-CATGTCTGGGACAT-GCAATGGCCTTGAGACGTAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGC-ATCGACTTGAGACATGAGCCA
* *
34888439 GTGTAAGA-CATGTCTGGGACATGGCATCGACTTGTGATATGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGACATGAGCCA
* * * *
34888485 GTATAAGATCGTGTCTAGGACA
1 GTGTAAGACCATGTCTGGGACA
34888507 AGACGTCGGC
Statistics
Matches: 95, Mismatches: 16, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
46 56 0.59
47 31 0.33
48 8 0.08
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGACATGAGCCA
Found at i:34895879 original size:47 final size:46
Alignment explanation
Indices: 34895814--34896030 Score: 219
Period size: 46 Copynumber: 4.6 Consensus size: 46
34895804 TGTGTGAGCT
* *
34895814 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTATGAGAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATGAGAGTC
* * *
34895860 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CATTGAGACGAG-GGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGAGAGTC
* * * *
34895907 TAGTGTAAGACATGTCTGGGACATGTAAT-GGCCTCGAGACGTA-AGCC
1 -AGTGTAAGACATGTCTGGGACATG-CATCGGCCACGAGATG-AGAGTC
* *
34895954 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGTC
34896000 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
34896031 ACTTTATATA
Statistics
Matches: 144, Mismatches: 14, Indels: 24
0.79 0.08 0.13
Matches are distributed among these distances:
45 3 0.02
46 63 0.44
47 52 0.36
48 25 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.31, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGTC
Found at i:34896055 original size:47 final size:48
Alignment explanation
Indices: 34895814--34896077 Score: 183
Period size: 47 Copynumber: 5.6 Consensus size: 48
34895804 TGTGTGAGCT
* * * *
34895814 AGTGTAAGA-CATGTCTGGGACAT-GCATC-AGCCAC-ATTATGAGAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGA-CTACGA-GATGATAGCC
* * * ** *
34895860 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTA-CGAGATGATAGCC
** * * *
34895908 AGTGTAAGA-CATGTCTGGGACATGTAATGGCCT-CGAGACG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGAT-AGCC
* *
34895954 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGATAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGATAGCC
** *
34896000 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-TTATAT-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGAT-AGCC
* ** *
34896047 AGTATAAGACTGTGTCTAGGACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
34896078 GCACCTTACC
Statistics
Matches: 176, Mismatches: 30, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
45 5 0.03
46 60 0.34
47 82 0.47
48 28 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTACGAGATGATAGCC
Found at i:34896069 original size:140 final size:140
Alignment explanation
Indices: 34895814--34896071 Score: 351
Period size: 140 Copynumber: 1.8 Consensus size: 140
34895804 TGTGTGAGCT
*
34895814 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGTCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGAGTCAGTGTAAGACCATGTCTGG
* * * * *
34895879 GACATGGCATCGGCATTGAGACGAGGGCTAGTGTAAGACATGTCTGGGACATGTAATGGCCTCGA
66 GACATGGCATCGACATTGAGACGAGAGCCAGTATAAGACATGTCTAGGACATGTAATGGCCTCGA
34895944 GACGTAAGCC
131 GACGTAAGCC
* * *
34895954 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATGATGAGAGTCAGTGTAAGACCATGTCTG
* * * *
34896018 GGACATGGCATCGAC-TTTATA-TATGAGCCAGTATAAGACTGTGTCTAGGACATG
65 GGACATGGCATCGACATTGAGACGA-GAGCCAGTATAAGAC-ATGTCTAGGACATG
34896072 GCATCGGCAC
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
138 1 0.01
139 16 0.16
140 84 0.82
141 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATGAGAGTCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGACGAGAGCCAGTATAAGACATGTCTAGGACATGTAATGGCCTCGA
GACGTAAGCC
Found at i:34897482 original size:28 final size:28
Alignment explanation
Indices: 34897454--34897506 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
34897444 ATTTATTATA
34897454 AAAATAAGT-AAAATTAAATATTTTAAT
1 AAAATAAGTGAAAATTAAATATTTTAAT
** *
34897481 AATTTAAGTGAAAATTAATTATTTTA
1 AAAATAAGTGAAAATTAAATATTTTA
34897507 TAATTAAAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 7 0.32
28 15 0.68
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (28 bp):
AAAATAAGTGAAAATTAAATATTTTAAT
Found at i:34897523 original size:27 final size:28
Alignment explanation
Indices: 34897459--34897516 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 28
34897449 TTATAAAAAT
*
34897459 AAGT-AAAATTAAATATTTTAATAATTT
1 AAGTGAAAATTAAATATTTTAATAATTA
*
34897486 AAGTGAAAATTAATTATTTT-ATAATTA
1 AAGTGAAAATTAAATATTTTAATAATTA
34897513 AAGT
1 AAGT
34897517 TTGAATTTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 14 0.50
28 14 0.50
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (28 bp):
AAGTGAAAATTAAATATTTTAATAATTA
Found at i:34898052 original size:26 final size:26
Alignment explanation
Indices: 34898016--34898073 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
34898006 CAATAGGTTG
34898016 AGCCATGTAAATGGTCTCATCAAGAT
1 AGCCATGTAAATGGTCTCATCAAGAT
** *
34898042 AGCCATGTAAATTTTCTCATGAAGAT
1 AGCCATGTAAATGGTCTCATCAAGAT
34898068 AGCCAT
1 AGCCAT
34898074 TCGAGAATGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.29
Consensus pattern (26 bp):
AGCCATGTAAATGGTCTCATCAAGAT
Found at i:34902118 original size:31 final size:31
Alignment explanation
Indices: 34902083--34902230 Score: 192
Period size: 31 Copynumber: 4.8 Consensus size: 31
34902073 TTGTCACTTT
*
34902083 TAGCCAAAGCTACCACTATTCACTGATCAGG
1 TAGCCAAAGCTACCACTTTTCACTGATCAGG
** *
34902114 TAGCCGGAGCTACCATTTTTCACTGATCAGG
1 TAGCCAAAGCTACCACTTTTCACTGATCAGG
*
34902145 TAGCCGAAGCTACCACTTTTCACTGATCAGG
1 TAGCCAAAGCTACCACTTTTCACTGATCAGG
* *
34902176 TACCCGAAA-CTACCACTTTTCACTGATTAGG
1 TAGCC-AAAGCTACCACTTTTCACTGATCAGG
*
34902207 TAACCGAAA-CTACCACTTTTCACT
1 TAGCC-AAAGCTACCACTTTTCACT
34902231 TGTCATTTAT
Statistics
Matches: 106, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
31 104 0.98
32 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (31 bp):
TAGCCAAAGCTACCACTTTTCACTGATCAGG
Found at i:34902155 original size:62 final size:62
Alignment explanation
Indices: 34902083--34902230 Score: 215
Period size: 62 Copynumber: 2.4 Consensus size: 62
34902073 TTGTCACTTT
* * * * * *
34902083 TAGCCAAAGCTACCACTATTCACTGATCAGGTAGCCGGAGCTACCATTTTTCACTGATCAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGGTACCCGAAACTACCACTTTTCACTGATCAGG
*
34902145 TAGCCGAAGCTACCACTTTTCACTGATCAGGTACCCGAAACTACCACTTTTCACTGATTAGG
1 TAGCCGAAGCTACCACTTTTCACTGATCAGGTACCCGAAACTACCACTTTTCACTGATCAGG
* *
34902207 TAACCGAAACTACCACTTTTCACT
1 TAGCCGAAGCTACCACTTTTCACT
34902231 TGTCATTTAT
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 77 1.00
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (62 bp):
TAGCCGAAGCTACCACTTTTCACTGATCAGGTACCCGAAACTACCACTTTTCACTGATCAGG
Found at i:34902302 original size:50 final size:51
Alignment explanation
Indices: 34902210--34902334 Score: 189
Period size: 50 Copynumber: 2.5 Consensus size: 51
34902200 GATTAGGTAA
* * * * *
34902210 CCGAAACTACCACTTTTCACTTGTCATTTATCCTTGATCAGATAAGTGTAG
1 CCGAAGCTATCACTTATCACTTGTAACTTATCCTTGATCAGATAAGTGTAG
34902261 CCGAAGCTATCACTTATCACTT-TAACTTATCCTTGATCAGATAAGTGTAG
1 CCGAAGCTATCACTTATCACTTGTAACTTATCCTTGATCAGATAAGTGTAG
*
34902311 CCAAAGCTATCACTTATCACTTGT
1 CCGAAGCTATCACTTATCACTTGT
34902335 TGCCATGGTG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 47 0.70
51 20 0.30
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.34
Consensus pattern (51 bp):
CCGAAGCTATCACTTATCACTTGTAACTTATCCTTGATCAGATAAGTGTAG
Found at i:34906003 original size:5 final size:5
Alignment explanation
Indices: 34905990--34906021 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
34905980 AGAAAACTAT
*
34905990 AAATA AAATG AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AAATA AA
34906022 GAACACACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:34912814 original size:19 final size:18
Alignment explanation
Indices: 34912790--34912832 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 18
34912780 AATATGAATA
34912790 AAATTTATCTACCTAAAT
1 AAATTTATCTACCTAAAT
34912808 AAGATTTATCTACCTAAAT
1 AA-ATTTATCTACCTAAAT
34912827 AAATTT
1 AAATTT
34912833 TCAATAAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 6 0.25
19 18 0.75
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.40
Consensus pattern (18 bp):
AAATTTATCTACCTAAAT
Found at i:34920370 original size:19 final size:19
Alignment explanation
Indices: 34920324--34920371 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
34920314 ATATATATAT
34920324 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
34920342 TAAATCTTATTTTGGTAGA
1 TAAATTTTATTTAGGTAGA
34920361 TAAATTTTATT
1 TAAATTTTATT
34920372 CATATTCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:34921752 original size:40 final size:40
Alignment explanation
Indices: 34921697--34921777 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
34921687 GGCCATAAGT
34921697 GTGTGAAGTCCCAACTCTTATTGTACCCTTATTTAGAGGG
1 GTGTGAAGTCCCAACTCTTATTGTACCCTTATTTAGAGGG
34921737 GTGTGAAGTCCCAACTCTTATTGTACCCTTATTTAGAGGG
1 GTGTGAAGTCCCAACTCTTATTGTACCCTTATTTAGAGGG
34921777 G
1 G
34921778 GAGGATGAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (40 bp):
GTGTGAAGTCCCAACTCTTATTGTACCCTTATTTAGAGGG
Found at i:34923292 original size:196 final size:197
Alignment explanation
Indices: 34922951--34923336 Score: 729
Period size: 196 Copynumber: 2.0 Consensus size: 197
34922941 AGTTTGTGCC
*
34922951 AATTTTCTTTGATGACATTTTTGTTTACTCCATGTCTTGGTTAGATCATTTGCTGCATCTCAGAG
1 AATTTTCTTTGATGACATTTTTGTTTACTCCATGTCTTGGTTAGATCATTTGCTACATCTCAGAG
34923016 TAAATGCCAATTTGGTTCCCCTCGAACTAAGTACCTTGGTCATGTAATTTCCCAAGGAACTATGG
66 TAAATGCCAATTTGGTTCCCCTCGAACTAAGTACCTTGGTCATGTAATTTCCCAAGGAACTATGG
* *
34923081 CCATGGACCAATCTAAAGTGAAAAGTGTGATTTTTTGGCAAACTCCACAATCAGTTAAAGAGCTT
131 CCATGGACAAATCTAAAGTGAAAAGTGTGATTTTTTGGCAAACTCCACAATCAATTAAAGAGCTT
34923146 TG
196 TG
*
34923148 AATTTT-TTTGATGACATTTTTGTTTACTCCATGTCTTGGTTCGATCATTTGCTACATCTCAGAG
1 AATTTTCTTTGATGACATTTTTGTTTACTCCATGTCTTGGTTAGATCATTTGCTACATCTCAGAG
34923212 TAAATGCCAATTTGGTTCCCCTCGAACTAAGTACCTTGGTCATGTAATTTCCCAAGGAACTATGG
66 TAAATGCCAATTTGGTTCCCCTCGAACTAAGTACCTTGGTCATGTAATTTCCCAAGGAACTATGG
34923277 CCATGGACAAATCTAAAGTGAAAAGTGTGATTTTTTGGCAAACTCCACAATCAATTAAAG
131 CCATGGACAAATCTAAAGTGAAAAGTGTGATTTTTTGGCAAACTCCACAATCAATTAAAG
34923337 GGTTTTGAGG
Statistics
Matches: 185, Mismatches: 4, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
196 179 0.97
197 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (197 bp):
AATTTTCTTTGATGACATTTTTGTTTACTCCATGTCTTGGTTAGATCATTTGCTACATCTCAGAG
TAAATGCCAATTTGGTTCCCCTCGAACTAAGTACCTTGGTCATGTAATTTCCCAAGGAACTATGG
CCATGGACAAATCTAAAGTGAAAAGTGTGATTTTTTGGCAAACTCCACAATCAATTAAAGAGCTT
TG
Found at i:34923787 original size:21 final size:22
Alignment explanation
Indices: 34923763--34923808 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
34923753 TTCAAACTGA
* *
34923763 AAGGGGC-ACACGCCCTTGTGG
1 AAGGGGCGACACACCCATGTGG
34923784 AA-GGGCGACACACCCATGTGG
1 AAGGGGCGACACACCCATGTGG
34923805 AAGG
1 AAGG
34923809 TCGATATGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
20 4 0.19
21 16 0.76
22 1 0.05
ACGTcount: A:0.26, C:0.26, G:0.37, T:0.11
Consensus pattern (22 bp):
AAGGGGCGACACACCCATGTGG
Found at i:34925063 original size:48 final size:48
Alignment explanation
Indices: 34925008--34925194 Score: 216
Period size: 48 Copynumber: 3.9 Consensus size: 48
34924998 GTGAATTGCT
* * *
34925008 GATGCCATGTTCC-AAACATGGTCTTACACTAGCTCACATGTCGAGGCC
1 GATGCCATG-TCCTAGACATGGTCTTACACTAGCTCACATATCAAGGCC
* * * * *
34925056 GATGCCATGTCCCAGATATGGTCTTACACTAGCGCACATATCAATGCT
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATATCAAGGCC
* * **
34925104 AATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATAAT-TTGGCC
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCACAT-ATCAAGGCC
* *
34925152 GATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCA
1 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATATCA
34925195 CCCAAATGGC
Statistics
Matches: 115, Mismatches: 21, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
47 5 0.04
48 108 0.94
49 2 0.02
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (48 bp):
GATGCCATGTCCTAGACATGGTCTTACACTAGCTCACATATCAAGGCC
Found at i:34925173 original size:96 final size:96
Alignment explanation
Indices: 34925004--34925194 Score: 260
Period size: 96 Copynumber: 2.0 Consensus size: 96
34924994 GAGGGTGAAT
* *
34925004 TGCTGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCGAGGCCGATGCCATGTCCC
1 TGCTAATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCCC
* *
34925069 AGATATGGTCTTACACTAGCGCACATATCAA
66 AGACATGGTCTTACACTAGCACACATATCAA
* * **
34925100 TGCTAATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATAAT-TTGGCCGATGCCATGTC
1 TGCTAATGCCATGTTCC-AAACATGGTCTTACACTAGCTCACAT-ATCGAGGCCGATGCCATGTC
* *
34925163 CTAGACATGGTCTTACACTGGCACACATATCA
64 CCAGACATGGTCTTACACTAGCACACATATCA
34925195 CCCAAATGGC
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
95 3 0.04
96 79 0.95
97 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.28
Consensus pattern (96 bp):
TGCTAATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGCCGATGCCATGTCCC
AGACATGGTCTTACACTAGCACACATATCAA
Found at i:34951945 original size:48 final size:46
Alignment explanation
Indices: 34951873--34952194 Score: 258
Period size: 48 Copynumber: 6.8 Consensus size: 46
34951863 GTGAATTGCT
34951873 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCAAGGCC
1 GATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACATGTCAAGGCC
* * ** * * *
34951921 GATGCCATGTCCCAGACATAGTCTTACACTAGCTTTCGTCTCAATGCC
1 GATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACATGTCAAGGCC
* * * ** * ***
34951969 GAGGCCATGTCCAACATGTTCTTATACTGGCTCTTATATGGTGGCC
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCACATGTCAAGGCC
* * *
34952015 GATGCCATGTCCAACATGGTCTTACACTGGCTCATA-GTCAACGTC
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCACATGTCAAGGCC
* * * * **
34952060 GATGCCATGTCCAAGATGGTCTTACACTAGCTCTCGTAACATA-GCC
1 GATGCCATGTCCAACATGGTCTTACACTGGCTCACATGTCA-AGGCC
*
34952106 GATGCCATGTTCCAAACATGGTCTTACACTGGCATACGAAATGT---GGCC
1 GATGCCATG-TCC-AACATGGTCTTACACTGGC-T-C-ACATGTCAAGGCC
*
34952154 AATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGT
1 GATGCCATGT-CCA-ACATGGTCTTACACTGGCTCACATGT
34952195 TACCCTAAAT
Statistics
Matches: 217, Mismatches: 47, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
45 39 0.18
46 67 0.31
47 10 0.05
48 98 0.45
49 1 0.00
50 1 0.00
51 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (46 bp):
GATGCCATGTCCAACATGGTCTTACACTGGCTCACATGTCAAGGCC
Done.