Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 116 of 290
Found at i:36102985 original size:93 final size:93
Alignment explanation
Indices: 36102879--36103049 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
36102869 ACCCCTAAGT
* * *
36102879 GAACTCGGACTCAACTCAATGAACTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
36102944 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
** *
36102972 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
36103037 TGAGTTCGGATGC
66 CGAGTTCGGATGC
36103050 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAACTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:36103503 original size:30 final size:30
Alignment explanation
Indices: 36103469--36103528 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
36103459 AATTAATACG
*
36103469 AACTTTGGAAAAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
36103499 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36103529 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.38
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36109324 original size:28 final size:28
Alignment explanation
Indices: 36109292--36109356 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
36109282 ATTTACTAGA
*
36109292 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
36109320 ATACCCCTATGTATGCTAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36109348 ATACCCCTA
1 ATACCCCTA
36109357 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36109503 original size:28 final size:28
Alignment explanation
Indices: 36109462--36109552 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
36109452 AGGAAGCGTC
36109462 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
36109490 CTGGTGGCCCTGCCACAAATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
* * *
36109518 CTAGTGGCACTACCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
36109547 CTGGTG
1 CTGGTG
36109553 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
28 49 0.89
29 6 0.11
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:36110045 original size:18 final size:18
Alignment explanation
Indices: 36110006--36110046 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
36109996 TAATAAGGCC
* *
36110006 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
36110024 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
36110042 TTTTA
1 TTTTA
36110047 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:36111734 original size:19 final size:17
Alignment explanation
Indices: 36111679--36111728 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 17
36111669 TTATACTATA
36111679 AAATATTTATTATTAAT
1 AAATATTTATTATTAAT
*
36111696 --ATATTTATAATTGTAAT
1 AAATATTTATTA-T-TAAT
36111713 AAATATTTATTATTAA
1 AAATATTTATTATTAA
36111729 AATAAAATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
15 9 0.33
16 1 0.04
17 7 0.26
18 1 0.04
19 9 0.33
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
AAATATTTATTATTAAT
Found at i:36117668 original size:48 final size:48
Alignment explanation
Indices: 36117598--36117823 Score: 281
Period size: 48 Copynumber: 4.7 Consensus size: 48
36117588 TGTGAGCTGA
* * **
36117598 TGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
* * * * *
36117646 TGTAAGACCATGTCTGGGACATGGCATTGGCCTCGGTATGTGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
* * ** *
36117694 TGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
* * * * *
36117742 TGTAAGACCATGTCTAGGACATGGCATCGACCTCGACATGTGGGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
36117790 TGTAAGACCATGTCTGGGACATGGCATCGACATC
1 TGTAAGACCATGTCTGGGACATGGCATCGACATC
36117824 TTACCCTTTT
Statistics
Matches: 147, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 147 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATCGATATGAGAGCTAG
Found at i:36117750 original size:96 final size:96
Alignment explanation
Indices: 36117586--36117822 Score: 377
Period size: 96 Copynumber: 2.5 Consensus size: 96
36117576 TTACTAGGGT
*
36117586 TATGTGAGCT-GATGTAAGACCATGTTTGGAACATGGCATCGACATTTATATGAGAGCTAGTGTA
1 TATGTGAGCTAG-TGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAGTGTA
* * * *
36117650 AGACCATGTCTGGGACATGGCATTGGCCTCGG
65 AGACCATGTCTAGGACATGGCATCGACCTCGA
36117682 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAGTGTAA
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAGTGTAA
36117747 GACCATGTCTAGGACATGGCATCGACCTCGA
66 GACCATGTCTAGGACATGGCATCGACCTCGA
* * * *
36117778 CATGTGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACAT
1 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACAT
36117823 CTTACCCTTT
Statistics
Matches: 131, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
96 130 0.99
97 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGACATTTATATAAGAGCTAGTGTAA
GACCATGTCTAGGACATGGCATCGACCTCGA
Found at i:36125331 original size:27 final size:27
Alignment explanation
Indices: 36125294--36125498 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
36125284 TAAATTGTAC
36125294 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
36125321 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36125348 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36125374 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36125402 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36125430 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36125457 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36125484 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36125499 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36125433 original size:109 final size:108
Alignment explanation
Indices: 36125295--36125498 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
36125285 AAATTGTACA
* *
36125295 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
36125360 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
36125403 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
36125468 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
36125499 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:36133295 original size:27 final size:27
Alignment explanation
Indices: 36133258--36133462 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
36133248 TAAATTGTAC
36133258 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
36133285 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36133312 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36133338 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36133366 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36133394 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36133421 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36133448 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36133463 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36133397 original size:109 final size:108
Alignment explanation
Indices: 36133259--36133462 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
36133249 AAATTGTACA
* *
36133259 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
36133324 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
36133367 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
36133432 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
36133463 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:36135905 original size:40 final size:40
Alignment explanation
Indices: 36135820--36136047 Score: 350
Period size: 40 Copynumber: 5.7 Consensus size: 40
36135810 TCCAAACACA
** *
36135820 AATGCCTTCGGGACTTAGTCCGGATATAAC-ACCAGTACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
* * ** * *
36135859 AGTGCCTTCGGAACTTGGCCCGGATATAACGACCAGCATG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
*
36135899 AATGCCTTCGGGACTTAACCCGGATATAACAACCCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
36135939 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
36135979 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
1 AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
*
36136019 AATGCCTTTGGGACTTAACCCGGATATAA
1 AATGCCTTCGGGACTTAACCCGGATATAA
36136048 TCCTAAATTA
Statistics
Matches: 173, Mismatches: 15, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 26 0.15
40 147 0.85
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATAACAACCAGCACG
Found at i:36143441 original size:48 final size:47
Alignment explanation
Indices: 36143276--36143455 Score: 145
Period size: 48 Copynumber: 3.8 Consensus size: 47
36143266 GGTGTAATGC
* * *
36143276 CGATGCCATGTCACAGACATGGTCTTACACT-AGCTCATCCATCAAGT-T
1 CGATGCCATGTCCCAAACATGGTCTTACACTGA-CAC-TCCAT-AAGTAT
* * *
36143324 -GATGCCATGTCCCAAACATGGTCCTACACTGACTA-TCGA-AATTGAGGT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGAC-ACTCCATAAGT-A--T
* ** * *
36143372 CGACGCCATGTCCCAGGCATGGTCTTACACTGACACCTCTATACGTAT
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACA-CTCCATAAGTAT
*
36143420 CGATGCCATGTCCCAAACATGGTCTTACACTAACAC
1 CGATGCCATGTCCCAAACATGGTCTTACACTGACAC
36143456 ATCTCGTAAC
Statistics
Matches: 105, Mismatches: 17, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
44 3 0.03
46 3 0.03
47 29 0.28
48 35 0.33
49 29 0.28
50 4 0.04
51 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (47 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTGACACTCCATAAGTAT
Found at i:36143522 original size:46 final size:46
Alignment explanation
Indices: 36143470--36143637 Score: 142
Period size: 46 Copynumber: 3.6 Consensus size: 46
36143460 CGTAACTGAC
* * *
36143470 GCATGTCCTAGACATGTCTTACACTGGCT-TACATCACGAGGTCGAT
1 GCATGTCCTAGACATGTCTTACACTAGCTCT-CATCACAAGGCCGAT
* * *
36143516 GCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATGCCGAT
1 GCATGTCCTAGACATGTCTTACACTAGCTCTCATCACAAGGCCGAT
* ** * *** *
36143562 GCCATATCCTAGACATGGTCTTATTCTGGCTCTCAT-AGTGTGGCCAAT
1 G-CATGTCCTAGACAT-GTCTTACACTAGCTCTCATCA-CAAGGCCGAT
* *
36143610 GCATGTCCCAGAAATGTCTTACACTAGC
1 GCATGTCCTAGACATGTCTTACACTAGC
36143638 GCACAAATAA
Statistics
Matches: 95, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
46 49 0.52
47 24 0.25
48 22 0.23
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GCATGTCCTAGACATGTCTTACACTAGCTCTCATCACAAGGCCGAT
Found at i:36151062 original size:48 final size:48
Alignment explanation
Indices: 36150834--36151064 Score: 159
Period size: 48 Copynumber: 4.8 Consensus size: 48
36150824 AAACATAGGG
* * * * *
36150834 TATA-ATGCTGATGTCATGTCCCAGAAATGGTCTTACACTGGCTCATC
1 TATACATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGATCCTC
* * * * * *
36150881 CAT-CAAGTCGATGCCACGTCCCAGACATGGTCTTATACT-GA--CTAT
1 TATACATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGATCCT-C
* * ** * *
36150926 TAAAATCAAGGCCGACACCATGTCCCAGACATGGTCTTACACTGGCTCTCGC
1 T-ATA-C-ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGATC-CTC
* * * * *
36150978 ATCTCCGTGTCGATGCCATGTCCCAGACATGATCTTACACT-GATACCTC
1 -TATACATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGAT-CCTC
36151027 TATACATGCCGATGCCATGTCCCAGACATGGTCTTACA
1 TATACATGCCGATGCCATGTCCCAGACATGGTCTTACA
36151065 TTGACACATC
Statistics
Matches: 134, Mismatches: 38, Indels: 23
0.69 0.19 0.12
Matches are distributed among these distances:
44 1 0.01
46 2 0.01
47 30 0.22
48 34 0.25
49 33 0.25
50 31 0.23
51 1 0.01
53 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (48 bp):
TATACATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGATCCTC
Found at i:36151176 original size:46 final size:47
Alignment explanation
Indices: 36150943--36151206 Score: 197
Period size: 46 Copynumber: 5.6 Consensus size: 47
36150933 AAGGCCGACA
* * *
36150943 CCATGTCCCAGACATGGTCTTACACTGGCTCTCGCATCTCCGTGTCGATG
1 CCATGTCCCAGACAT-GTCTTACACTAGCTCT--CATCTCAGTGCCGATG
* *
36150993 CCATGTCCCAGACATGATCTTACACT-GATACCTCTAT-ACA-TGCCGATG
1 CCATGTCCCAGACATG-TCTTACACTAGCT--CTC-ATCTCAGTGCCGATG
* * * * *
36151041 CCATGTCCCAGACATGGTCTTACA-TTG-ACACATCTC-GTAGTCGACG
1 CCATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCAGT-GCCGATG
* * *
36151087 -CATGTCCCAGACATGTCTTACAGTGGCT-TACATCATGAG-GCCGATG
1 CCATGTCCCAGACATGTCTTACACTAGCTCT-CATC-TCAGTGCCGATG
* *
36151133 -CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAGTGCCGATG
1 CCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAGTGCCGATG
* * *
36151179 CCACGTCCTAGACATATCTTACACTAGC
1 CCATGTCCCAGACATGTCTTACACTAGC
36151207 ACACAAATAA
Statistics
Matches: 173, Mismatches: 24, Indels: 37
0.74 0.10 0.16
Matches are distributed among these distances:
44 10 0.06
45 23 0.13
46 49 0.28
47 26 0.15
48 31 0.18
49 6 0.03
50 26 0.15
51 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
CCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAGTGCCGATG
Found at i:36153147 original size:21 final size:21
Alignment explanation
Indices: 36153113--36153180 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
36153103 TATATTCGAA
*
36153113 ATTATTTTTATAAATTTTAAAT
1 ATTATTTTT-TAAATATTAAAT
*
36153135 ATTATTTTTTAAATATTACAT
1 ATTATTTTTTAAATATTAAAT
*
36153156 A-TATTTTTTAATAATATAAAAT
1 ATTATTTTTT-A-AATATTAAAT
36153178 ATT
1 ATT
36153181 TAAATATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
20 8 0.21
21 12 0.31
22 18 0.46
23 1 0.03
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTATTTTTTAAATATTAAAT
Found at i:36153206 original size:22 final size:21
Alignment explanation
Indices: 36153179--36153253 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 21
36153169 ATATAAAATA
* *
36153179 TTTAAATATTTTTAATGTATAT
1 TTTAAAT-TTTTAAATATATAT
*
36153201 TTTAAATTTTAAATATAATATAT
1 TTTAAATTTTTAA-AT-ATATAT
36153224 TTTAAATTTTTAAATATAATAT
1 TTTAAATTTTTAAATAT-ATAT
36153246 TTTAAATT
1 TTTAAATT
36153254 ATGATTTTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
21 6 0.13
22 23 0.50
23 17 0.37
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (21 bp):
TTTAAATTTTTAAATATATAT
Found at i:36153224 original size:44 final size:45
Alignment explanation
Indices: 36153168--36153253 Score: 122
Period size: 45 Copynumber: 1.9 Consensus size: 45
36153158 ATTTTTTAAT
* *
36153168 AATATAAAATA-TTTAAATATTTTTAATGT-ATATTTTAAATTTTA
1 AATATAAAATATTTTAAAT-TTTTAAATATAATATTTTAAATTTTA
*
36153212 AATATAATATATTTTAAATTTTTAAATATAATATTTTAAATT
1 AATATAAAATATTTTAAATTTTTAAATATAATATTTTAAATT
36153254 ATGATTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 18 0.49
45 19 0.51
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (45 bp):
AATATAAAATATTTTAAATTTTTAAATATAATATTTTAAATTTTA
Found at i:36153225 original size:23 final size:22
Alignment explanation
Indices: 36153196--36153253 Score: 91
Period size: 23 Copynumber: 2.6 Consensus size: 22
36153186 ATTTTTAATG
36153196 TATATTTTAAATTTTAAATATAA
1 TATATTTTAAATTTTAAATAT-A
36153219 TATATTTTAAATTTTTAAATATA
1 TATATTTTAAA-TTTTAAATATA
36153242 -ATATTTTAAATT
1 TATATTTTAAATT
36153254 ATGATTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
21 2 0.06
22 10 0.29
23 12 0.35
24 10 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TATATTTTAAATTTTAAATATA
Found at i:36153239 original size:24 final size:23
Alignment explanation
Indices: 36153196--36153253 Score: 93
Period size: 22 Copynumber: 2.6 Consensus size: 23
36153186 ATTTTTAATG
36153196 TATATTTTAAA-TTTTAAATATAA
1 TATATTTTAAATTTTTAAATAT-A
36153219 TATATTTTAAATTTTTAAATATA
1 TATATTTTAAATTTTTAAATATA
36153242 -ATATTTTAAATT
1 TATATTTTAAATT
36153254 ATGATTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
22 12 0.35
23 12 0.35
24 10 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (23 bp):
TATATTTTAAATTTTTAAATATA
Found at i:36153250 original size:14 final size:14
Alignment explanation
Indices: 36153206--36153266 Score: 53
Period size: 14 Copynumber: 4.6 Consensus size: 14
36153196 TATATTTTAA
36153206 ATTTTAAATATAAT
1 ATTTTAAATATAAT
36153220 ATATTT---TA-AAT
1 AT-TTTAAATATAAT
36153231 -TTTTAAATATAAT
1 ATTTTAAATATAAT
*
36153244 ATTTTAAATTATGAT
1 ATTTTAAA-TATAAT
36153259 -TTTTAAAT
1 ATTTTAAAT
36153267 TATTTTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 15
0.71 0.02 0.27
Matches are distributed among these distances:
9 3 0.08
10 1 0.03
11 3 0.08
12 4 0.10
13 4 0.10
14 16 0.41
15 8 0.21
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (14 bp):
ATTTTAAATATAAT
Found at i:36153267 original size:14 final size:14
Alignment explanation
Indices: 36153228--36153269 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
36153218 ATATATTTTA
36153228 AATTTTTAAA-TAT
1 AATTTTTAAATTAT
36153241 AATATTTTAAATTAT
1 AAT-TTTTAAATTAT
*
36153256 GATTTTTAAATTAT
1 AATTTTTAAATTAT
36153270 TTTTAAAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 3 0.12
14 18 0.69
15 5 0.19
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
AATTTTTAAATTAT
Found at i:36153433 original size:20 final size:20
Alignment explanation
Indices: 36153408--36153473 Score: 84
Period size: 20 Copynumber: 3.4 Consensus size: 20
36153398 TATATTATTA
36153408 AAAATATATCTTTAAAATTT
1 AAAATATATCTTTAAAATTT
*
36153428 AAAATATATCTTTAAACAAATT
1 AAAATATATCTTT-AA-AATTT
36153450 AAAA-ATA--TTTAAAATTT
1 AAAATATATCTTTAAAATTT
36153467 AAAATAT
1 AAAATAT
36153474 TATAAAACTA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 8 0.20
18 4 0.10
19 3 0.07
20 13 0.32
21 5 0.12
22 8 0.20
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAATATATCTTTAAAATTT
Found at i:36153464 original size:16 final size:17
Alignment explanation
Indices: 36153445--36153480 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
36153435 ATCTTTAAAC
36153445 AAATTAAAAATATT-TA
1 AAATTAAAAATATTATA
*
36153461 AAATTTAAAATATTATA
1 AAATTAAAAATATTATA
36153478 AAA
1 AAA
36153481 CTAATAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATTAAAAATATTATA
Found at i:36153560 original size:20 final size:21
Alignment explanation
Indices: 36153521--36153579 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
36153511 AAAATCTTTA
*
36153521 AATATTTTATATTATTAAAAA-
1 AATATTTAATATTA-TAAAAAT
*
36153542 ATTATTTAATATT-TAAAAAT
1 AATATTTAATATTATAAAAAT
36153562 AATATTTAAATATATATA
1 AATATTT-AATAT-TATA
36153580 TTTAAAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 6 0.19
20 6 0.19
21 16 0.52
22 1 0.03
23 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
AATATTTAATATTATAAAAAT
Found at i:36153582 original size:14 final size:13
Alignment explanation
Indices: 36153548--36153586 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
36153538 AAAAATTATT
36153548 TAATATTTAAAAA
1 TAATATTTAAAAA
*
36153561 TAATATTTAAATA
1 TAATATTTAAAAA
36153574 TATATATTTAAAA
1 TA-ATATTTAAAA
36153587 TTTTAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:36155000 original size:14 final size:15
Alignment explanation
Indices: 36154981--36155013 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
36154971 TATTATTTAA
36154981 TTAAAA-TATATTTT
1 TTAAAAGTATATTTT
36154995 TTAAAAGTTATATTTT
1 TTAAAAG-TATATTTT
36155011 TTA
1 TTA
36155014 GCGGCGTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
16 11 0.65
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TTAAAAGTATATTTT
Found at i:36155103 original size:43 final size:43
Alignment explanation
Indices: 36155054--36155193 Score: 185
Period size: 43 Copynumber: 3.3 Consensus size: 43
36155044 GTCTGTTTTA
*
36155054 TAGCGGCATTTGTGAAAAAGGTGCCGCTAAAAGTCATGGTCTT
1 TAGCGGCGTTTGTGAAAAAGGTGCCGCTAAAAGTCATGGTCTT
* * *
36155097 TAGCGGCGTTTTTGGGAAAAGCGT--CGCTAAAGGTCATGGTCTT
1 TAGCGGCGTTTGT-GAAAAAG-GTGCCGCTAAAAGTCATGGTCTT
* * *
36155140 TAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAAGTCATGGTCTT
1 TAGCGGCGTTTGTGAAAAAGGTGCCGCTAAAAGTCATGGTCTT
36155183 TAGCGGCGTTT
1 TAGCGGCGTTT
36155194 TTTAAAATAA
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.01
42 5 0.06
43 69 0.83
44 6 0.07
45 2 0.02
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAAAAAGGTGCCGCTAAAAGTCATGGTCTT
Found at i:36155174 original size:86 final size:85
Alignment explanation
Indices: 36155010--36155195 Score: 266
Period size: 86 Copynumber: 2.2 Consensus size: 85
36155000 AGTTATATTT
* * * * * * *
36155010 TTTAGCGGCGTTTATGTGATAAGTGTCGCTAAAGGTCTGTTTTATAGCGGCATTTGTGAAAAAGG
1 TTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTCTGTCTTATAGCGGCATTTGCGAAAAAAG
*
36155075 TGCCGCTAAAAGTCATGGTC
66 CGCCGCTAAAAGTCATGGTC
*
36155095 TTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTCATGGTCTT-TAGCGGCGTTTGCGAAAAA
1 TTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTC-T-GTCTTATAGCGGCATTTGCGAAAAA
36155159 AGCGCCGCTAAAAGTCATGGTC
64 AGCGCCGCTAAAAGTCATGGTC
36155181 TTTAGCGGCGTTTTT
1 TTTAGCGGCGTTTTT
36155196 TAAAATAATC
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
85 33 0.37
86 53 0.59
87 4 0.04
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (85 bp):
TTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTCTGTCTTATAGCGGCATTTGCGAAAAAAG
CGCCGCTAAAAGTCATGGTC
Found at i:36159051 original size:22 final size:22
Alignment explanation
Indices: 36159026--36159068 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
36159016 AACTTAATTC
*
36159026 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
36159048 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
36159069 ATGAGCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:36164126 original size:18 final size:17
Alignment explanation
Indices: 36164068--36164136 Score: 54
Period size: 18 Copynumber: 4.1 Consensus size: 17
36164058 AATTTAGCCA
**
36164068 TTTATTTTT-ATTACAT
1 TTTATTTTTCATTTTAT
**
36164084 TTTATTTTTGTTTTTAGT
1 TTTATTTTTCATTTTA-T
*
36164102 TTAATTTTTACATTTTAT
1 TTTATTTTT-CATTTTAT
36164120 TTTA-TTTT-ATTTTAT
1 TTTATTTTTCATTTTAT
36164135 TT
1 TT
36164137 GCTTATGGTA
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
15 9 0.21
16 9 0.21
17 7 0.16
18 13 0.30
19 5 0.12
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (17 bp):
TTTATTTTTCATTTTAT
Found at i:36168191 original size:3 final size:3
Alignment explanation
Indices: 36168183--36168246 Score: 55
Period size: 3 Copynumber: 22.7 Consensus size: 3
36168173 TTAATTGTAT
* * * * *
36168183 TTA TTA TTA TTA TAA TTT TTA TTG TTA TT- TTA TT- TTC TT- CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36168228 TTA TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TT
36168247 TGGCTATAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
2 7 0.14
3 42 0.86
ACGTcount: A:0.25, C:0.03, G:0.02, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:36169879 original size:26 final size:26
Alignment explanation
Indices: 36169847--36169927 Score: 75
Period size: 26 Copynumber: 3.3 Consensus size: 26
36169837 TTTATGTTTA
*
36169847 TGTTTATTATTTT-TT-AA-TTATTT
1 TGTTTCTTATTTTCTTAAACTTATTT
36169870 T-TATTCTTATTTTCTTAAACTTATTT
1 TGT-TTCTTATTTTCTTAAACTTATTT
* *
36169896 TGTTTCTTATCTT-TTGAACTATATTT
1 TGTTTCTTATTTTCTTAAACT-TATTT
36169922 T-TTTCT
1 TGTTTCT
36169928 ATGGTTGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
22 1 0.02
23 10 0.20
24 2 0.04
25 13 0.27
26 22 0.45
27 1 0.02
ACGTcount: A:0.20, C:0.09, G:0.04, T:0.68
Consensus pattern (26 bp):
TGTTTCTTATTTTCTTAAACTTATTT
Found at i:36174453 original size:40 final size:40
Alignment explanation
Indices: 36174400--36174584 Score: 309
Period size: 40 Copynumber: 4.6 Consensus size: 40
36174390 ACTACTTGCT
* *
36174400 CAAATGCCTTCGGGACTTAGCCCGGCTATAGAAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
36174440 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
36174480 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
36174520 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
36174560 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
36174585 TTATCATCCG
Statistics
Matches: 138, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
39 1 0.01
40 137 0.99
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:36176753 original size:22 final size:22
Alignment explanation
Indices: 36176725--36176767 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
36176715 AACTTAATAC
*
36176725 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
36176747 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
36176768 AGGAGTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:36176778 original size:30 final size:30
Alignment explanation
Indices: 36176742--36176802 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
36176732 TTGATTGAAT
36176742 GTAATACATTTATTAATTGAATGTAAAGGA
1 GTAATACATTTATTAATTGAATGTAAAGGA
36176772 GTAATACATTTATTAATTGAATGTAAAGGA
1 GTAATACATTTATTAATTGAATGTAAAGGA
36176802 G
1 G
36176803 CTTATAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.03, G:0.18, T:0.36
Consensus pattern (30 bp):
GTAATACATTTATTAATTGAATGTAAAGGA
Found at i:36181734 original size:68 final size:64
Alignment explanation
Indices: 36181635--36181780 Score: 161
Period size: 68 Copynumber: 2.2 Consensus size: 64
36181625 CCACGTATGC
** * *
36181635 GACCTAGCTACATATATCCCGTAGCTCTCTTGTTTACATGGTGTACACAT-AGCA-TCACCCATG
1 GACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACAC-TCAGCACT-ACACATG
36181698 T
64 T
* * *
36181699 GACCTAGCTACATCATAATGTCTCGTAGCTCTCTTGTACACATGATGTGCACTCAGCACTATACA
1 GACCTAGCTACAT-AT-A--TCCCGTAGCTCTCTTGTACACATGATGTACACTCAGCACTACACA
36181764 TGT
62 TGT
36181767 GACCTAGCTACATA
1 GACCTAGCTACATA
36181781 CCATCTGTAT
Statistics
Matches: 69, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
64 13 0.19
65 2 0.03
66 1 0.01
67 2 0.03
68 50 0.72
69 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (64 bp):
GACCTAGCTACATATATCCCGTAGCTCTCTTGTACACATGATGTACACTCAGCACTACACATGT
Found at i:36182279 original size:30 final size:30
Alignment explanation
Indices: 36182245--36182305 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36182235 TCCTTAACTC
36182245 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
36182275 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
36182305 A
1 A
36182306 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:36186197 original size:11 final size:11
Alignment explanation
Indices: 36186181--36186210 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
36186171 AGTCGAATAG
36186181 ATTATTTTATT
1 ATTATTTTATT
36186192 ATTATTTTATT
1 ATTATTTTATT
36186203 ATTATTTT
1 ATTATTTT
36186211 GATGTTATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (11 bp):
ATTATTTTATT
Found at i:36187550 original size:50 final size:51
Alignment explanation
Indices: 36187346--36187565 Score: 179
Period size: 46 Copynumber: 4.6 Consensus size: 51
36187336 GGTGTGAGCC
* * *
36187346 AGTGTAAGACCATGTTTGGGACATGGCATCGGC-ATTGAG--A--CGAGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTA-CGAGATATGCGA-AGCT
* * *
36187394 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCT-CAAGACAT---AAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCTACGAGATATGCGAAGCT
* *
36187440 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACGAGATGTGTG-AG-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATATGCGAAGCT
** *
36187487 -GTAAAAGACCATGTCTGGGGCATGGCATCGGC-ACGA-ATATGCGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATATGCG-AAGCT
36187536 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
36187566 AACCTCGATG
Statistics
Matches: 140, Mismatches: 17, Indels: 28
0.76 0.09 0.15
Matches are distributed among these distances:
45 3 0.02
46 54 0.39
47 34 0.24
48 22 0.16
49 1 0.01
50 26 0.19
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (51 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCTACGAGATATGCGAAGCT
Found at i:36187610 original size:99 final size:95
Alignment explanation
Indices: 36187435--36187616 Score: 224
Period size: 99 Copynumber: 1.9 Consensus size: 95
36187425 CTCAAGACAT
** **
36187435 AAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTGAGTGTAAAAGACCATG
1 AAGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGATGTGCCAGTGT-AAAGACCATG
** *
36187500 TCTGGGGCATGGCATCGGCACGAATATGCGA
65 TCCAGGACATGGCATCGGCACGAATATGCGA
36187531 AAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCT-CGATGATGATAGCCAGTGT-AAGA
1 AAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATC-ACCTACGA-GATG-T-GCCAGTGTAAAGA
36187594 CCATGTCCAGGACATGGCATCGG
60 CCATGTCCAGGACATGGCATCGG
36187617 TAACTTACCC
Statistics
Matches: 73, Mismatches: 7, Indels: 9
0.82 0.08 0.10
Matches are distributed among these distances:
96 14 0.19
97 14 0.19
98 8 0.11
99 30 0.41
100 1 0.01
101 6 0.08
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (95 bp):
AAGCTAGTGTAAGACATGTCTGGGACATGCATCACCTACGAGATGTGCCAGTGTAAAGACCATGT
CCAGGACATGGCATCGGCACGAATATGCGA
Found at i:36191290 original size:140 final size:140
Alignment explanation
Indices: 36190872--36191416 Score: 580
Period size: 140 Copynumber: 3.9 Consensus size: 140
36190862 CTTCCAAAAG
* * * * ** *
36190872 ATAGTTAGCACGAGCTCAAGCTCCAAATTGTAACCTTAAGGCTCAAAAGTTCAATATTGC-AGCC
1 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAAACC
* * ** * * * *
36190936 CCAAAATTAGTTAGTGCGAGCTCAAGCTCCTAGTTGTAACCTTAAGGCTTGCAGGTTCAATACCG
66 CCAAAA-CAGTTAGTGTGAGCTCAAGCTCCTAACTGTAACTTTAAGGCTTACAAGTTTAATACCG
* *
36191001 TAGCCACCAAA
130 TAACCCCCAAA
* * * ** * *
36191012 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCTTTAAGGCTCGCAGGTTCAATATTG-TATCC
1 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAAACC
* * * *
36191076 CCAAAACAGTTAGCGTGAGTTCAAGCT-CTCAACTATAACTGTAAGGCTTACAAGTTTAATACCG
66 CCAAAACAGTTAGTGTGAGCTCAAGCTCCT-AACTGTAACTTTAAGGCTTACAAGTTTAATACCG
*
36191140 CAACCCCCAAA
130 TAACCCCCAAA
** * *
36191151 ATAGTTAGTGCAAACTCAAGCTCCCAATTGTAGCTTTAAGGCTCACAAGTTCAATACCGCAAACC
1 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAAACC
* * * *
36191216 CCAAAAGAGTTAGTGTGAGCTCAATCTCCTAACTGTGACTTTAAGGCTCACAAGTTTAATACCGT
66 CCAAAACAGTTAGTGTGAGCTCAAGCTCCTAACTGTAACTTTAAGGCTTACAAGTTTAATACCGT
36191281 AACCCCCAAA
131 AACCCCCAAA
* * *
36191291 ATAGTTAACACGAGCTCAAGCTCCCAATTGTAGCCTTAAGGTTCACAAGTTCAATACCGC-AACC
1 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAAACC
* * * * * * *
36191355 TCTAAGACAGTTAGTGTGA-ATCCAAGCTCCCAACTATAGCTTTAAGG-TTCATAAGTTTAATA
66 -CCAAAACAGTTAGTGTGAGCT-CAAGCTCCTAACTGTAACTTTAAGGCTT-ACAAGTTTAATA
36191417 TTGTCGTCTT
Statistics
Matches: 339, Mismatches: 59, Indels: 14
0.82 0.14 0.03
Matches are distributed among these distances:
138 2 0.01
139 109 0.32
140 226 0.67
141 2 0.01
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (140 bp):
ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAAACC
CCAAAACAGTTAGTGTGAGCTCAAGCTCCTAACTGTAACTTTAAGGCTTACAAGTTTAATACCGT
AACCCCCAAA
Found at i:36191367 original size:70 final size:69
Alignment explanation
Indices: 36190872--36191354 Score: 439
Period size: 70 Copynumber: 6.9 Consensus size: 69
36190862 CTTCCAAAAG
* * * * ** *
36190872 ATAGTTAGCACGAGCTCAAGCTCCAAATTGTAACCTTAAGGCTCAAAAGTTCAATATTGCAGCCC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAACCC
36190937 CAAA
66 CAAA
* * * * ** * * *
36190941 ATTAGTTAGTGCGAGCTCAAGCTCCTAGTTGTAACCTTAAGGCTTGCAGGTTCAATACCGTAGCC
1 A-TAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAACC
36191006 ACCAAA
65 -CCAAA
* * * * * ** * *
36191012 ATAGTTAGCACAAGCTCAAGCTCCCAATTGTAGCTTTAAGGCTCGCAGGTTCAATATTGTATCCC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAACCC
36191077 CAAA
66 CAAA
* * * * * * * * *
36191081 ACAGTTAGCGTGAGTTCAAGCTCTCAACTATA-ACTGTAAGGCTTACAAGTTTAATACCGCAACC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCT-TAAGGCTCACAAGTTCAATACCGCAA-C
36191145 CCCAAA
64 CCCAAA
* * * *
36191151 ATAGTTAGTGCAAACTCAAGCTCCCAATTGTAGCTTTAAGGCTCACAAGTTCAATACCGCAAACC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGC-AACC
36191216 CCAAA
65 CCAAA
* * * * * * * * *
36191221 AGAGTTAGTGTGAGCTCAATCTCCTAACTGT-GACTTTAAGGCTCACAAGTTTAATACCGTAACC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAG-CCTTAAGGCTCACAAGTTCAATACCGCAA-C
36191285 CCCAAA
64 CCCAAA
* * *
36191291 ATAGTTAACACGAGCTCAAGCTCCCAATTGTAGCCTTAAGGTTCACAAGTTCAATACCGCAACC
1 ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAACC
36191355 TCTAAGACAG
Statistics
Matches: 331, Mismatches: 74, Indels: 18
0.78 0.17 0.04
Matches are distributed among these distances:
68 1 0.00
69 53 0.16
70 267 0.81
71 10 0.03
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (69 bp):
ATAGTTAGCGCGAGCTCAAGCTCCCAATTGTAGCCTTAAGGCTCACAAGTTCAATACCGCAACCC
CAAA
Found at i:36191381 original size:70 final size:70
Alignment explanation
Indices: 36190884--36191416 Score: 380
Period size: 70 Copynumber: 7.6 Consensus size: 70
36190874 AGTTAGCACG
* * * * * ** * *
36190884 AGCTCAAGCTCCAAATTGTAACCTTAAGGCTCAAAAGTTCAATATTGCAGCCCCAAAATTAGTTA
1 AGCTCAAGCTCCCAACTGTAGCTTTAAGGCTCACAAGTTCAATACCGCAACCCCAAAA-CAGTTA
*
36190949 GTGCG-
65 GTGTGA
* ** * * ** * * * *
36190954 AGCTCAAGCTCCTAGTTGTAACCTTAAGGCTTGCAGGTTCAATACCGTAGCCACCAAAATAGTTA
1 AGCTCAAGCTCCCAACTGTAGCTTTAAGGCTCACAAGTTCAATACCGCAACC-CCAAAACAGTTA
***
36191019 G-CACA
65 GTGTGA
* * * ** * *
36191024 AGCTCAAGCTCCCAATTGTAGCTTTAAGGCTCGCAGGTTCAATATTGTATCCCCAAAACAGTTAG
1 AGCTCAAGCTCCCAACTGTAGCTTTAAGGCTCACAAGTTCAATACCGCAACCCCAAAACAGTTAG
*
36191089 CGTG-
66 TGTGA
* * * * * * * *
36191093 AGTTCAAGCTCTCAACTATAACTGTAAGGCTTACAAGTTTAATACCGCAACCCCCAAAATAGTTA
1 AGCTCAAGCTCCCAACTGTAGCTTTAAGGCTCACAAGTTCAATACCGCAA-CCCCAAAACAGTTA
*
36191158 GTG-CA
65 GTGTGA
* * *
36191163 AACTCAAGCTCCCAATTGTAGCTTTAAGGCTCACAAGTTCAATACCGCAAACCCCAAAAGAGTTA
1 AGCTCAAGCTCCCAACTGTAGCTTTAAGGCTCACAAGTTCAATACCGC-AACCCCAAAACAGTTA
36191228 GTGTG-
65 GTGTGA
* * * * *
36191233 AGCTCAATCTCCTAACTGT-GACTTTAAGGCTCACAAGTTTAATACCGTAACCCCCAAAATAGTT
1 AGCTCAAGCTCCCAACTGTAG-CTTTAAGGCTCACAAGTTCAATACCGCAA-CCCCAAAACAGTT
****
36191297 AACACG-
64 AGTGTGA
* * * * *
36191303 AGCTCAAGCTCCCAATTGTAGCCTTAAGGTTCACAAGTTCAATACCGCAACCTCTAAGACAGTTA
1 AGCTCAAGCTCCCAACTGTAGCTTTAAGGCTCACAAGTTCAATACCGCAACC-CCAAAACAGTTA
36191368 GTGTGA
65 GTGTGA
* * * * *
36191374 ATC-CAAGCTCCCAACTATAGCTTTAAGGTTCATAAGTTTAATA
1 AGCTCAAGCTCCCAACTGTAGCTTTAAGGCTCACAAGTTCAATA
36191417 TTGTCGTCTT
Statistics
Matches: 368, Mismatches: 83, Indels: 24
0.77 0.17 0.05
Matches are distributed among these distances:
69 53 0.14
70 304 0.83
71 11 0.03
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.26
Consensus pattern (70 bp):
AGCTCAAGCTCCCAACTGTAGCTTTAAGGCTCACAAGTTCAATACCGCAACCCCAAAACAGTTAG
TGTGA
Found at i:36196690 original size:19 final size:18
Alignment explanation
Indices: 36196666--36196701 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
36196656 ATCTCTATGC
36196666 AAAAAAAAAGAAGAAAAAG
1 AAAAAAAAAG-AGAAAAAG
*
36196685 AAAAAAATAGAGAAAAA
1 AAAAAAAAAGAGAAAAA
36196702 TTTAAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (18 bp):
AAAAAAAAAGAGAAAAAG
Found at i:36197344 original size:19 final size:20
Alignment explanation
Indices: 36197306--36197347 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
36197296 CCAGTCCTAC
* *
36197306 GAATAGTAGGGTCAACTCAT
1 GAATAGTAGAGTCAAATCAT
36197326 GAATAGT-GAGTCAAATCAT
1 GAATAGTAGAGTCAAATCAT
36197345 GAA
1 GAA
36197348 CAATGATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.40, C:0.12, G:0.24, T:0.24
Consensus pattern (20 bp):
GAATAGTAGAGTCAAATCAT
Found at i:36198343 original size:14 final size:14
Alignment explanation
Indices: 36198324--36198352 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36198314 CTTAATGAGA
36198324 TAGCTTTGAGATTT
1 TAGCTTTGAGATTT
36198338 TAGCTTTGAGATTT
1 TAGCTTTGAGATTT
36198352 T
1 T
36198353 CTCAAAAGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.52
Consensus pattern (14 bp):
TAGCTTTGAGATTT
Found at i:36205872 original size:18 final size:17
Alignment explanation
Indices: 36205849--36205891 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
36205839 TTGTGTGTTC
36205849 TTTATTTATTT-TTTTATT
1 TTTATTT-TTTATTTTA-T
36205867 TTTATTTTTTATTTTAT
1 TTTATTTTTTATTTTAT
36205884 TTTATTTT
1 TTTATTTT
36205892 CTCAAATTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTATTTTTTATTTTAT
Found at i:36205876 original size:13 final size:13
Alignment explanation
Indices: 36205849--36205886 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 13
36205839 TTGTGTGTTC
*
36205849 TTTATTTAT-TTT
1 TTTATTTTTATTT
36205861 TTTATTTTTATTT
1 TTTATTTTTATTT
36205874 TTTA-TTTTATTT
1 TTTATTTTTATTT
36205886 T
1 T
36205887 ATTTTCTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 17 0.71
13 7 0.29
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTATTTTTATTT
Found at i:36219702 original size:49 final size:49
Alignment explanation
Indices: 36219624--36219869 Score: 294
Period size: 49 Copynumber: 5.0 Consensus size: 49
36219614 GTAGCCGAAG
* * *
36219624 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
36219673 TTATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * *
36219723 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* * ** *
36219773 GTTATCAGGTACAAATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * *
36219823 CAATCTAGTACACGTAGTAGCCTTCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
36219870 TCACAATAGC
Statistics
Matches: 165, Mismatches: 29, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
49 79 0.48
50 48 0.29
51 38 0.23
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:36219807 original size:101 final size:98
Alignment explanation
Indices: 36219638--36219869 Score: 331
Period size: 100 Copynumber: 2.3 Consensus size: 98
36219628 CTGGTACGCA
* * * **
36219638 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACAAATAGTAGCCTGCACTTA
* *
36219703 GTACTACACACGTGACCTAACCATCT-GATACACG
66 GTACTACACACGCGACC-AACAATCTAG-TACACG
*
36219737 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACAAATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCAGGTACAAATAGTAGCCTGCACT
*
36219802 TAGTACTACACATGCGACCAACAATCTAGTACACG
64 TAGTACTACACACGCGACCAACAATCTAGTACACG
*
36219837 TAGTAGCCTTCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
36219870 TCACAATAGC
Statistics
Matches: 119, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
99 30 0.25
100 46 0.39
101 43 0.36
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCAGGTACAAATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACAATCTAGTACACG
Found at i:36220551 original size:30 final size:30
Alignment explanation
Indices: 36220517--36220576 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
36220507 CTTTAATACG
36220517 AACTTTGGAAAAATTAC-CATTTTGCCCCTA
1 AACTTTGGAAAAATTACAC-TTTTGCCCCTA
* * *
36220547 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
36220577 GGCTCAAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:36224263 original size:42 final size:42
Alignment explanation
Indices: 36224216--36224315 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
36224206 CACGGCCTAA
* * *
36224216 CACACGGGTGTGTGTGGCATTTTTTAGAGCATACGGACTAGC
1 CACACGGGTGTGTGTGGCACTTTTTAGAGCACACAGACTAGC
* *
36224258 CACACGGGTTTGTGTGGCACTTTTTAGGGCACACAGACTAGC
1 CACACGGGTGTGTGTGGCACTTTTTAGAGCACACAGACTAGC
*
36224300 CACACGGGCGTGTGTG
1 CACACGGGTGTGTGTG
36224316 TTGGCCGAGT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.20, C:0.22, G:0.32, T:0.26
Consensus pattern (42 bp):
CACACGGGTGTGTGTGGCACTTTTTAGAGCACACAGACTAGC
Found at i:36228445 original size:19 final size:20
Alignment explanation
Indices: 36228418--36228460 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
36228408 TGATTAAGTT
*
36228418 TTAATTAATTAAAG-TTTAA
1 TTAAGTAATTAAAGATTTAA
36228437 TTAAGTAATTAAAGATTTAA
1 TTAAGTAATTAAAGATTTAA
36228457 TTAA
1 TTAA
36228461 CGTATATAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
TTAAGTAATTAAAGATTTAA
Found at i:36228707 original size:18 final size:18
Alignment explanation
Indices: 36228684--36228719 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
36228674 AAGTTTTTGA
36228684 AAGTTTTCATTGTTGTTT
1 AAGTTTTCATTGTTGTTT
36228702 AAGTTTTCATTGTTGTTT
1 AAGTTTTCATTGTTGTTT
36228720 TCTTGAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.06, G:0.17, T:0.61
Consensus pattern (18 bp):
AAGTTTTCATTGTTGTTT
Found at i:36231449 original size:42 final size:43
Alignment explanation
Indices: 36231390--36231489 Score: 139
Period size: 42 Copynumber: 2.3 Consensus size: 43
36231380 GTTTGTTTGA
* * * *
36231390 AAAAAACGCCGCTAAAGATCATGACTTTTAG-GGTGCTTTTTT
1 AAAAAACGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTAT
* *
36231432 AAAAAACGTCGCTAAAGATCGGGACCTTTAGCGGCGCTTTTAT
1 AAAAAACGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTAT
36231475 AAAAAACGCCGCTAA
1 AAAAAACGCCGCTAA
36231490 TTTGCCCAGT
Statistics
Matches: 50, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 27 0.54
43 23 0.46
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (43 bp):
AAAAAACGCCGCTAAAGATCAGGACCTTTAGCGGCGCTTTTAT
Found at i:36231807 original size:21 final size:21
Alignment explanation
Indices: 36231783--36231830 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
36231773 TTCTGTTCTG
*
36231783 CTCCGCCTCCCTCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
36231804 CTCCGCCTCCCGCGCTGCTGC
1 CTCCGCCTCCCGCGCTGCTGC
36231825 CTCCGC
1 CTCCGC
36231831 TCTAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.00, C:0.58, G:0.21, T:0.21
Consensus pattern (21 bp):
CTCCGCCTCCCGCGCTGCTGC
Found at i:36235526 original size:12 final size:12
Alignment explanation
Indices: 36235509--36235534 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36235499 GTCATCCTCC
36235509 TCATCAGATTCA
1 TCATCAGATTCA
36235521 TCATCAGATTCA
1 TCATCAGATTCA
36235533 TC
1 TC
36235535 CCTCGATCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (12 bp):
TCATCAGATTCA
Found at i:36236910 original size:40 final size:40
Alignment explanation
Indices: 36236865--36236945 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
36236855 TGCATCCCGC
*
36236865 ATCATACCTTCCATGTCATCTTCTTTAACATACTGACGGT
1 ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
*
36236905 ATCATACCTTCCATGTCATCTTCTCTAATATACTGACGGT
1 ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
36236945 A
1 A
36236946 ACCACTATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.26, C:0.27, G:0.10, T:0.37
Consensus pattern (40 bp):
ATCATACCTTCCATGTCATCTTCTCTAACATACTGACGGT
Found at i:36237421 original size:9 final size:9
Alignment explanation
Indices: 36237407--36237534 Score: 112
Period size: 9 Copynumber: 13.6 Consensus size: 9
36237397 ATGTATTAGT
36237407 TAAGTTATG
1 TAAGTTATG
36237416 TAAGTTGTTATG
1 TAA---GTTATG
* *
36237428 TACGCTATG
1 TAAGTTATG
*
36237437 TGAGTTATG
1 TAAGTTATG
*
36237446 TAAATTATG
1 TAAGTTATG
36237455 TAAGTTATG
1 TAAGTTATG
*
36237464 TGAGTTATG
1 TAAGTTATG
36237473 TAAGTTGTTATG
1 TAA---GTTATG
*
36237485 TAAATTATG
1 TAAGTTATG
*
36237494 TAAGTTATA
1 TAAGTTATG
*
36237503 TGAGTTATG
1 TAAGTTATG
36237512 TAAGTTATG
1 TAAGTTATG
* *
36237521 TAATTTATT
1 TAAGTTATG
36237530 TAAGT
1 TAAGT
36237535 AATGATCAAT
Statistics
Matches: 94, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
9 77 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (9 bp):
TAAGTTATG
Found at i:36237534 original size:57 final size:57
Alignment explanation
Indices: 36237407--36237534 Score: 166
Period size: 57 Copynumber: 2.2 Consensus size: 57
36237397 ATGTATTAGT
** * *
36237407 TAAGTTATGTAAGTTGTTATGTACGCTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAACTATGTAAGTTATATAAATTATGTAAGTTATG
* * * *
36237464 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAACTATGTAAGTTATATAAATTATGTAAGTTATG
* *
36237521 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
36237535 AATGATCAAT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
57 60 1.00
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.46
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAACTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:36238238 original size:10 final size:10
Alignment explanation
Indices: 36238223--36238251 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
36238213 AATAAAATTA
36238223 ATTCATACTT
1 ATTCATACTT
36238233 ATTCATACTT
1 ATTCATACTT
36238243 ATTCATACT
1 ATTCATACT
36238252 CCACTCTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.48
Consensus pattern (10 bp):
ATTCATACTT
Found at i:36238754 original size:183 final size:183
Alignment explanation
Indices: 36238441--36239506 Score: 1970
Period size: 183 Copynumber: 5.8 Consensus size: 183
36238431 CCTAGAACAG
36238441 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
36238506 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTAAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36238571 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
36238624 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
* * *
36238689 ATTAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTTAGTTGAACCAATAGTTGTAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
* *
36238754 AGCAGGAAGCAGTAACTAAAATACATACAACATTAATTCACTAATATAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
36238807 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
* *
36238872 ATCAGTACCAAATATTAATTTGAAGATTAAATGGTAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
*
36238937 AGCAGGAAGCAGTAACTGAAATACATAACAACATTATTTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACAT-ACAACATTAATTCACTAATACAGACAC
*
36238991 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAAATTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
36239056 ATTAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36239121 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
*
36239174 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCAAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
36239239 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAACTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36239304 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
*
36239357 ATGTAAGATTATAAGAGTAGCACCAAATATTTTTTCAGTTTAAGCAAATATAAAAACTTTATCTA
1 ATGTAAGATTATAAGAGTAGCACCAAATA-TATTTCAGTTTAAGCAAATATAAAAACTTTATCTA
*
36239422 TATCAGTACCAAATATTAATTCGAACATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAG
65 TATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAG
*
36239487 GAGCAGGAAGTAGTAACTGA
130 GAGCAGGAAGCAGTAACTGA
36239507 TGCTGAATCT
Statistics
Matches: 854, Mismatches: 27, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
183 562 0.66
184 292 0.34
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (183 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:36239505 original size:367 final size:366
Alignment explanation
Indices: 36238441--36239506 Score: 1979
Period size: 367 Copynumber: 2.9 Consensus size: 366
36238431 CCTAGAACAG
36238441 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
36238506 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTAAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36238571 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
36238636 AAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATTAGTACCAAA
196 AAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATTAGTACCAAA
* *
36238701 TATTAATTCGAAGATTAAATGGCAGCTTTAGTTGAACCAATAGTTGTAGGAGGAGCAGGAAGCAG
261 TATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCAG
* *
36238766 TAACTAAAATACATACAACATTAATTCACTAATATAGACAC
326 TAACTGAAATACATACAACATTAATTCACTAATACAGACAC
36238807 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
* *
36238872 ATCAGTACCAAATATTAATTTGAAGATTAAATGGTAGCTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
*
36238937 AGCAGGAAGCAGTAACTGAAATACATAACAACATTATTTCACTAATACAGACACATGTAAGATTA
131 AGCAGGAAGCAGTAACTGAAATACAT-ACAACATTAATTCACTAATACAGACACATGTAAGATTA
*
36239002 TAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAAATTTATCTATATTAGTACCAA
195 TAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATTAGTACCAA
36239067 ATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCA
260 ATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCA
36239132 GTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
325 GTAACTGAAATACATACAACATTAATTCACTAATACAGACAC
*
36239174 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCAAT
1 ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
*
36239239 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAACTTCAGTTGAACCAATAGTTGCAGGAGG
66 ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
36239304 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
131 AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
* *
36239369 AAGAGTAGCACCAAATATTTTTTCAGTTTAAGCAAATATAAAAACTTTATCTATATCAGTACCAA
196 AAGAGTAGCACCAAATA-TATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATTAGTACCAA
* *
36239434 ATATTAATTCGAACATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGTA
260 ATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCA
36239499 GTAACTGA
325 GTAACTGA
36239507 TGCTGAATCT
Statistics
Matches: 679, Mismatches: 19, Indels: 3
0.97 0.03 0.00
Matches are distributed among these distances:
366 208 0.31
367 471 0.69
ACGTcount: A:0.43, C:0.14, G:0.15, T:0.28
Consensus pattern (366 bp):
ATGTAAGATTATAAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTAT
ATCAGTACCAAATATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGG
AGCAGGAAGCAGTAACTGAAATACATACAACATTAATTCACTAATACAGACACATGTAAGATTAT
AAGAGTAGCACCAAATATATTTCAGTTTAAGCAAATATAAAAACTTTATCTATATTAGTACCAAA
TATTAATTCGAAGATTAAATGGCAGCTTCAGTTGAACCAATAGTTGCAGGAGGAGCAGGAAGCAG
TAACTGAAATACATACAACATTAATTCACTAATACAGACAC
Found at i:36240720 original size:151 final size:148
Alignment explanation
Indices: 36240515--36240814 Score: 537
Period size: 151 Copynumber: 2.0 Consensus size: 148
36240505 CCTTAATCAT
*
36240515 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTGTTATTGACTTAAA
1 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTGTTATCGACTTAAA
*
36240580 AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTTTTT
66 AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATC---TC
36240645 TTTTTTACAATTTATTGCATA
128 TTTTTTACAATTTATTGCATA
* *
36240666 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACTAGTTGTTATCGACTTAAA
1 AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTGTTATCGACTTAAA
36240731 AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCTTT
66 AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCTTT
36240796 TTTACAATTTATTGCATA
131 TTTACAATTTATTGCATA
36240814 A
1 A
36240815 CATTTCCGAG
Statistics
Matches: 145, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
148 23 0.16
151 122 0.84
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (148 bp):
AAGCTTGTGGAAGTTTAAAGTAGCTTATTCCAAACATAGCAGCAACCAGCTGTTATCGACTTAAA
AGGATATGCCAAAAAGCTGCAATTAGATACTAATATTTTACCCTTGAGTGCATATAAATCTCTTT
TTTACAATTTATTGCATA
Found at i:36243689 original size:14 final size:14
Alignment explanation
Indices: 36243672--36243712 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
36243662 ATTAAATCAT
*
36243672 AAACCCTACACCCC
1 AAACCCTAAACCCC
36243686 AAACCCTAAACCCC
1 AAACCCTAAACCCC
* *
36243700 AAATCATAAACCC
1 AAACCCTAAACCC
36243713 TAGAGCTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.44, C:0.46, G:0.00, T:0.10
Consensus pattern (14 bp):
AAACCCTAAACCCC
Found at i:36243693 original size:35 final size:35
Alignment explanation
Indices: 36243647--36243714 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
36243637 CCATATTTAT
**
36243647 CCCCAAACCCTAAAAATTAAATCATAAACCCTACA
1 CCCCAAACCCTAAAAACCAAATCATAAACCCTACA
**
36243682 CCCCAAACCCTAAACCCCAAATCATAAACCCTA
1 CCCCAAACCCTAAAAACCAAATCATAAACCCTA
36243715 GAGCTTAGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.46, C:0.40, G:0.00, T:0.15
Consensus pattern (35 bp):
CCCCAAACCCTAAAAACCAAATCATAAACCCTACA
Found at i:36243980 original size:14 final size:14
Alignment explanation
Indices: 36243963--36244035 Score: 64
Period size: 14 Copynumber: 5.4 Consensus size: 14
36243953 CCTTAAACCC
36243963 TAAACCATATATCT
1 TAAACCATATATCT
*
36243977 TAAACC--ATA-GT
1 TAAACCATATATCT
*
36243988 T-AACTCATAAATCT
1 TAAAC-CATATATCT
36244002 TAAACCCATATATCT
1 TAAA-CCATATATCT
* *
36244017 TAAACCATAAACCT
1 TAAACCATATATCT
36244031 TAAAC
1 TAAAC
36244036 TATAATGATA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
10 3 0.06
11 3 0.06
12 3 0.06
13 2 0.04
14 21 0.45
15 14 0.30
16 1 0.02
ACGTcount: A:0.45, C:0.23, G:0.01, T:0.30
Consensus pattern (14 bp):
TAAACCATATATCT
Found at i:36244255 original size:41 final size:40
Alignment explanation
Indices: 36244206--36244299 Score: 152
Period size: 41 Copynumber: 2.3 Consensus size: 40
36244196 CTTTTAGCAT
36244206 CGTTTTACCAAAAGCACCGCTAATGCTCTGGTCTTTAGCGG
1 CGTTTTACCAAAAGCACCGCTAATGCTCT-GTCTTTAGCGG
* * *
36244247 CGTTTTACCAAAAGCGCCTCTAATGCTCTGTTTTTAGCGG
1 CGTTTTACCAAAAGCACCGCTAATGCTCTGTCTTTAGCGG
36244287 CGTTTTACCAAAA
1 CGTTTTACCAAAA
36244300 ATGCCGGTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
40 23 0.46
41 27 0.54
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.32
Consensus pattern (40 bp):
CGTTTTACCAAAAGCACCGCTAATGCTCTGTCTTTAGCGG
Found at i:36244294 original size:40 final size:40
Alignment explanation
Indices: 36244197--36244363 Score: 165
Period size: 40 Copynumber: 4.1 Consensus size: 40
36244187 GTTATATGAC
** *
36244197 TTTTAGCATCGTTTTACCAAAAGCACCGCTAATGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
* *
36244238 CTTTAGCGGCGTTTTACCAAAAGCGCCTCTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
** * * *
36244278 TTTTAGCGGCGTTTTACCAAAAATGCCGGTATTGCTTTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* *** *
36244318 TTTTAGTGGCGTTTTTGGTAAAA-CGCCGCTATTGCTCTGT
1 TTTTAGCGGCG-TTTTACCAAAAGCGCCGCTAATGCTCTGT
36244358 GTTTTA
1 -TTTTA
36244364 CAATTTTTAC
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
40 59 0.56
41 46 0.44
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:36246236 original size:22 final size:22
Alignment explanation
Indices: 36246202--36246244 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36246192 CAACACTTCC
*
36246202 CATATATTGTGATAATTTTGTA
1 CATATATTATGATAATTTTGTA
*
36246224 CATATTTTATGATAATTTTGT
1 CATATATTATGATAATTTTGT
36246245 CTTCATCGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.12, T:0.53
Consensus pattern (22 bp):
CATATATTATGATAATTTTGTA
Found at i:36252027 original size:18 final size:18
Alignment explanation
Indices: 36252004--36252055 Score: 72
Period size: 18 Copynumber: 3.0 Consensus size: 18
36251994 TAAAACTAAA
36252004 TATATTATTAGGAGATAT
1 TATATTATTAGGAGATAT
*
36252022 TATATTATTATGAGATAT
1 TATATTATTAGGAGATAT
*
36252040 TATCTT-TTAGGA-ATAT
1 TATATTATTAGGAGATAT
36252056 ATAAATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
16 4 0.13
17 5 0.16
18 22 0.71
ACGTcount: A:0.37, C:0.02, G:0.13, T:0.48
Consensus pattern (18 bp):
TATATTATTAGGAGATAT
Found at i:36256096 original size:39 final size:39
Alignment explanation
Indices: 36256016--36256299 Score: 355
Period size: 38 Copynumber: 7.3 Consensus size: 39
36256006 ATTTGAATGA
* *
36256016 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
36256055 TATCC-GGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGA-TT
36256094 TAT-CGGG-TAAGACCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGA-TT
36256132 TATCCGGG-TAAGACCCGAAGGCATTTGTGCTAGTGA-T
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
36256169 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
36256209 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
36256249 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
36256288 ATATCC-GGCTAA
1 -TATCCGGGCTAA
36256300 ATTCCGAAGA
Statistics
Matches: 224, Mismatches: 14, Indels: 14
0.89 0.06 0.06
Matches are distributed among these distances:
37 9 0.04
38 88 0.39
39 55 0.25
40 72 0.32
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:36256163 original size:77 final size:76
Alignment explanation
Indices: 36256020--36256295 Score: 322
Period size: 77 Copynumber: 3.6 Consensus size: 76
36256010 GAATGATATC
* * * * * *
36256020 CGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTATCCGGCTAAGTCCCGAAGGCATTTATGC
1 CGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATATATCCGGGTAAGACCCGAAGGCATTTGTGC
36256085 TAGTGATTTTAT
66 TAGTGA-TTTAT
*
36256097 CGGG-TAAGACCCGAAGGCATTTGTGCTAGTGATTTTATCCGGGTAAGACCCGAAGGCATTTGTG
1 CGGGCTAAGACCCGAAGGCATTTGTGCTAGTGA-TATATCCGGGTAAGACCCGAAGGCATTTGTG
36256161 CTAGTGA-TTAT
65 CTAGTGATTTAT
*
36256172 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATATATCCGGGCTAAGACCCGAAGGCATTTG
1 -CGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATATATCCGGG-TAAGACCCGAAGGCATTTG
* * * *
36256237 TGCGAGTTGCTATACC
63 TGCTAG-TGATTTA-T
* * * *
36256253 CGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCCGG
1 CGGGCTAAGACCCGAAGGCATTTGTGCTAGT-GATATATCCGG
36256296 CTAAATTCCG
Statistics
Matches: 174, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
75 4 0.02
76 30 0.17
77 72 0.41
78 27 0.16
79 3 0.02
80 38 0.22
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (76 bp):
CGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATATATCCGGGTAAGACCCGAAGGCATTTGTGC
TAGTGATTTAT
Found at i:36264550 original size:40 final size:40
Alignment explanation
Indices: 36264490--36264780 Score: 372
Period size: 40 Copynumber: 7.3 Consensus size: 40
36264480 ATTTGAATGA
* * *
36264490 TATCTGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
36264530 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
36264570 TATCTGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
36264610 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* *
36264650 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * *
36264690 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * * * *
36264730 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
36264770 TATCC-GGCTAA
1 TATCCGGGCTAA
36264781 ATTCCGAAGA
Statistics
Matches: 231, Mismatches: 17, Indels: 7
0.91 0.07 0.03
Matches are distributed among these distances:
39 7 0.03
40 221 0.96
41 3 0.01
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.30
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:36266201 original size:74 final size:75
Alignment explanation
Indices: 36266080--36266230 Score: 295
Period size: 74 Copynumber: 2.0 Consensus size: 75
36266070 TTTTTTATGG
36266080 ACTGTGAAAACAAAGTAATTAAGTCTGTTAGCACCTCACGTTCGACTTCGGCAACGGTCTCGAGT
1 ACTGTGAAAACAAAGTAATTAAGTCTGTTAGCACCTCACGTTCGACTTCGGCAACGGTCTCGAGT
36266145 AC-GGGTGTT
66 ACGGGGTGTT
36266154 ACTGTGAAAACAAAGTAATTAAGTCTGTTAGCACCTCACGTTCGACTTCGGCAACGGTCTCGAGT
1 ACTGTGAAAACAAAGTAATTAAGTCTGTTAGCACCTCACGTTCGACTTCGGCAACGGTCTCGAGT
36266219 ACGGGGTGTT
66 ACGGGGTGTT
36266229 AC
1 AC
36266231 AGTTCCATTA
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 67 0.88
75 9 0.12
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (75 bp):
ACTGTGAAAACAAAGTAATTAAGTCTGTTAGCACCTCACGTTCGACTTCGGCAACGGTCTCGAGT
ACGGGGTGTT
Found at i:36267638 original size:65 final size:65
Alignment explanation
Indices: 36267498--36267638 Score: 176
Period size: 65 Copynumber: 2.2 Consensus size: 65
36267488 CTCTCGTATG
* * * **
36267498 TCTAGACCGTGTGAAAATTAGGGAGGCTACTGACTTAGCCACACAGCCACATGACACGCTTGTGT
1 TCTAGACCGTGTAAAAATTAGGGAGGCTACTAACTTAGCCACACAGCCACATCACACGCCCGTGT
* * * *
36267563 GCTAGGCCGTGTAAAAATTAGGGAGGCTACTAACTTAGCCACACGGCCA-GTCACACGCCCGTGT
1 TCTAGACCGTGTAAAAATTAGGGAGGCTACTAACTTAGCCACACAGCCACATCACACGCCCGTGT
*
36267627 ATCTAGCCCGTG
1 -TCTAGACCGTG
36267639 CTCGAAACTG
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
64 11 0.17
65 53 0.83
ACGTcount: A:0.26, C:0.27, G:0.26, T:0.21
Consensus pattern (65 bp):
TCTAGACCGTGTAAAAATTAGGGAGGCTACTAACTTAGCCACACAGCCACATCACACGCCCGTGT
Found at i:36268830 original size:44 final size:44
Alignment explanation
Indices: 36268739--36268848 Score: 127
Period size: 44 Copynumber: 2.5 Consensus size: 44
36268729 ATGCCATTGA
* * * * *
36268739 CCCAGACAGGGTCTTACATG-AA-ATCAAATACAATGCTGATGT
1 CCCAGACATGGTCTAACACGAAATATCAAATACAATGCTAACGT
*
36268781 CCCAGACATGGTCTAACACGTAAATATCAAAT-CGATGCTAACGT
1 CCCAGACATGGTCTAACACG-AAATATCAAATACAATGCTAACGT
*
36268825 CCCAGACATGGTCTTACACGAAAT
1 CCCAGACATGGTCTAACACGAAAT
36268849 CACATATTGA
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 17 0.29
43 4 0.07
44 30 0.52
45 7 0.12
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (44 bp):
CCCAGACATGGTCTAACACGAAATATCAAATACAATGCTAACGT
Found at i:36280908 original size:7 final size:7
Alignment explanation
Indices: 36280898--36281002 Score: 57
Period size: 7 Copynumber: 13.9 Consensus size: 7
36280888 ATTGATAATT
36280898 AAAAATA
1 AAAAATA
*
36280905 AAAAAGA
1 AAAAATA
*
36280912 AAAATCTA
1 AAAA-ATA
36280920 ATAAAATTA
1 A-AAAA-TA
*
36280929 AAAATTA
1 AAAAATA
36280936 AAAAATA
1 AAAAATA
*
36280943 AAAATTA
1 AAAAATA
*
36280950 AAAATTA
1 AAAAATA
*
36280957 AAAAGTA
1 AAAAATA
**
36280964 ATTTTAATA
1 A--AAAATA
*
36280973 AAAATTA
1 AAAAATA
36280980 AAAACATA
1 AAAA-ATA
36280988 AAATAATA
1 AAA-AATA
36280996 AATAAAT
1 AA-AAAT
36281003 GTTTTTAAAC
Statistics
Matches: 75, Mismatches: 15, Indels: 15
0.71 0.14 0.14
Matches are distributed among these distances:
7 45 0.60
8 18 0.24
9 12 0.16
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.25
Consensus pattern (7 bp):
AAAAATA
Found at i:36280929 original size:30 final size:28
Alignment explanation
Indices: 36280885--36280960 Score: 91
Period size: 31 Copynumber: 2.6 Consensus size: 28
36280875 AGAAATAACC
* *
36280885 AAAATTGATAATTAAAAA-TAAAAAAGA
1 AAAATTAAAAATTAAAAATTAAAAAAGA
*
36280912 AAAATCTAATAAAATTAAAAATTAAAAAATA
1 AAAAT-T-A-AAAATTAAAAATTAAAAAAGA
36280943 AAAATTAAAAATTAAAAA
1 AAAATTAAAAATTAAAAA
36280961 GTAATTTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.12
28 12 0.29
29 1 0.02
30 11 0.26
31 13 0.31
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.24
Consensus pattern (28 bp):
AAAATTAAAAATTAAAAATTAAAAAAGA
Found at i:36280958 original size:14 final size:14
Alignment explanation
Indices: 36280894--36280960 Score: 73
Period size: 14 Copynumber: 4.6 Consensus size: 14
36280884 CAAAATTGAT
36280894 AATTAAAAA-TAAA
1 AATTAAAAATTAAA
**
36280907 AAAGAAAAATCTAATAA
1 AATTAAAAAT-T-A-AA
36280924 AATTAAAAATTAAA
1 AATTAAAAATTAAA
*
36280938 AAATAAAAATTAAA
1 AATTAAAAATTAAA
36280952 AATTAAAAA
1 AATTAAAAA
36280961 GTAATTTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
13 7 0.16
14 23 0.52
15 2 0.05
16 2 0.05
17 10 0.23
ACGTcount: A:0.75, C:0.01, G:0.01, T:0.22
Consensus pattern (14 bp):
AATTAAAAATTAAA
Found at i:36283026 original size:55 final size:56
Alignment explanation
Indices: 36282965--36283094 Score: 140
Period size: 55 Copynumber: 2.4 Consensus size: 56
36282955 TCCGTGTTAA
* * **
36282965 TTTAACAGGTTTGACCACGGGTAC-TAGACACGGGTGTGTCGCACGCCTGTGTTGT
1 TTTAACAGGTTTGACCACGGGTACTTACACACGGGCGTGTCGCACGCCCATGTTGT
* * * *
36283020 TTTAACAGG-TTCACC-CATGGTTCTTCCACACGGGCGTGTCGCACGCCCATGTTGT
1 TTTAACAGGTTTGACCAC-GGGTACTTACACACGGGCGTGTCGCACGCCCATGTTGT
**
36283075 TTTGGCAGGTTTGACCACGG
1 TTTAACAGGTTTGACCACGG
36283095 CCATGTCGCA
Statistics
Matches: 59, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
53 1 0.02
54 9 0.15
55 42 0.71
56 6 0.10
57 1 0.02
ACGTcount: A:0.17, C:0.25, G:0.28, T:0.29
Consensus pattern (56 bp):
TTTAACAGGTTTGACCACGGGTACTTACACACGGGCGTGTCGCACGCCCATGTTGT
Found at i:36291253 original size:49 final size:49
Alignment explanation
Indices: 36291198--36291468 Score: 211
Period size: 49 Copynumber: 5.6 Consensus size: 49
36291188 ATCTAAGTCA
*
36291198 ATGCCATGTCCCAGACAGGTTTTACACTAGCTTCCATATATCGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTG
* * * * * *
36291247 ATGCCATGTCCTAGATAGGTCTTACACTGGC-CCTCACT-TATCTGTGTC-G
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTC-CA-TATATC-GAGGCTG
* ** * ** *
36291296 ATGCCATGTCCCAAACAGGTCTT--ACT--CTGACACACCTC-AAGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTG
* * * *
36291340 ATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATCTTGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTG
* * * *
36291389 ATGCCATGTCCTAGACAGGTCTTACACTGGC-TCTCATCTATCG-GTGCCG
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTC-CATATATCGAG-GCTG
* *
36291438 ATGCCATGTCTCAGAAAGGTCTTACACTAGC
1 ATGCCATGTCCCAGACAGGTCTTACACTAGC
36291469 ACACACATCA
Statistics
Matches: 171, Mismatches: 38, Indels: 26
0.73 0.16 0.11
Matches are distributed among these distances:
43 1 0.01
44 22 0.13
45 5 0.03
46 3 0.02
47 3 0.02
48 10 0.06
49 123 0.72
50 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.28
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTG
Found at i:36291392 original size:93 final size:92
Alignment explanation
Indices: 36291243--36291413 Score: 229
Period size: 93 Copynumber: 1.8 Consensus size: 92
36291233 ATATATCGAG
* * * *
36291243 GCTGATGCCATGTCCTAGATAGGTCTTACACTGGCCCTCACTTATCTGTGTCGATGCCATGTCCC
1 GCTGATGCCATGTCCCAGATAGGTCTTACACTAGCCCTCAC-TATCTGAGGCGATGCCATGTCCC
36291308 AAACAGGTCTTACTCTGACACACCTCAA
65 AAACAGGTCTTACTCTGACACACCTCAA
*
36291336 GCTGATGCCATGTCCCAGATAGGTCTTACACTAG-CTTGCA-TATCTTGAGGCTGATGCCATGTC
1 GCTGATGCCATGTCCCAGATAGGTCTTACACTAGCCCT-CACTATC-TGAGGC-GATGCCATGTC
* *
36291399 CTAGACAGGTCTTAC
63 CCAAACAGGTCTTAC
36291414 ACTGGCTCTC
Statistics
Matches: 68, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
91 4 0.06
92 6 0.09
93 58 0.85
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (92 bp):
GCTGATGCCATGTCCCAGATAGGTCTTACACTAGCCCTCACTATCTGAGGCGATGCCATGTCCCA
AACAGGTCTTACTCTGACACACCTCAA
Found at i:36291458 original size:142 final size:142
Alignment explanation
Indices: 36291198--36291462 Score: 408
Period size: 142 Copynumber: 1.9 Consensus size: 142
36291188 ATCTAAGTCA
* *
36291198 ATGCCATGTCCCAGACAGGTTTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCTAGAT
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCTAGAC
* *
36291263 AGGTCTTACACTGGCCCTCACTTATCTGTGTCGATGCCATGTCCCAAACAGGTCTTACTCTGACA
66 AGGTCTTACACTGGCCCTCACTTATCGGTGCCGATGCCATGTCCCAAACAGGTCTTACTCTGACA
36291328 CACCTCAAGCTG
131 CACCTCAAGCTG
* * * *
36291340 ATGCCATGTCCCAGATAGGTCTTACACTAGCTTGCATATCTTGAGGCTGATGCCATGTCCTAGAC
1 ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCTAGAC
* *
36291405 AGGTCTTACACTGGCTCTCA-TCTATCGGTGCCGATGCCATGTCTCAGAA-AGGTCTTAC
66 AGGTCTTACACTGGCCCTCACT-TATCGGTGCCGATGCCATGTCCCA-AACAGGTCTTAC
36291463 ACTAGCACAC
Statistics
Matches: 111, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
141 1 0.01
142 108 0.97
143 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (142 bp):
ATGCCATGTCCCAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCTAGAC
AGGTCTTACACTGGCCCTCACTTATCGGTGCCGATGCCATGTCCCAAACAGGTCTTACTCTGACA
CACCTCAAGCTG
Found at i:36291472 original size:142 final size:142
Alignment explanation
Indices: 36291145--36291474 Score: 405
Period size: 142 Copynumber: 2.3 Consensus size: 142
36291135 TAAGGTACGA
* * * * * *
36291145 TGCCGACGCCATGTTCCAAACATGGTCTTACACTGGCTCTCACATCTAAG-TCAATGCCATGTCC
1 TGCCGATGCCATGTCCCAAACA-GGTCTTACACT-G-ACACACCTC-AAGCT-GATGCCATGTCC
* *
36291209 CAGACAGGTTTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCTAGATAGGTCTTACAC
61 CAGACAGGTCTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCTAGACAGGTCTTACAC
*
36291274 TGGCCCTCACTTATCTG
126 TGGCCCTCACTTATCGG
* * *
36291291 TGTCGATGCCATGTCCCAAACAGGTCTTACTCTGACACACCTCAAGCTGATGCCATGTCCCAGAT
1 TGCCGATGCCATGTCCCAAACAGGTCTTACACTGACACACCTCAAGCTGATGCCATGTCCCAGAC
* * * *
36291356 AGGTCTTACACTAGCTTGCATATCTTGAGGCTGATGCCATGTCCTAGACAGGTCTTACACTGGCT
66 AGGTCTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCTAGACAGGTCTTACACTGGCC
36291421 CTCA-TCTATCGG
131 CTCACT-TATCGG
*
36291433 TGCCGATGCCATGTCTCAGAA-AGGTCTTACACTAGCACACAC
1 TGCCGATGCCATGTCCCA-AACAGGTCTTACACT-G-ACACAC
36291475 ATCACCCAAA
Statistics
Matches: 160, Mismatches: 19, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
141 1 0.01
142 113 0.71
143 10 0.06
144 7 0.04
145 10 0.06
146 19 0.12
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (142 bp):
TGCCGATGCCATGTCCCAAACAGGTCTTACACTGACACACCTCAAGCTGATGCCATGTCCCAGAC
AGGTCTTACACTAGCTTCCATATATCGAGGCTGATGCCATGTCCTAGACAGGTCTTACACTGGCC
CTCACTTATCGG
Found at i:36297471 original size:30 final size:30
Alignment explanation
Indices: 36297436--36297496 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
36297426 TCCTTAACTC
36297436 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
36297466 AAACTTTTGCATATTTACAATTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
36297496 A
1 A
36297497 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:36300479 original size:25 final size:25
Alignment explanation
Indices: 36300451--36300522 Score: 59
Period size: 25 Copynumber: 3.2 Consensus size: 25
36300441 TTATGAATGA
36300451 GCAAGTGGTAATCATGGGATTTAAT
1 GCAAGTGGTAATCATGGGATTTAAT
* * * *
36300476 GCAAATTGTAATAAT---A-GT-AT
1 GCAAGTGGTAATCATGGGATTTAAT
36300496 -C-AGTGGTAATCATGGGATTTAAT
1 GCAAGTGGTAATCATGGGATTTAAT
36300519 GCAA
1 GCAA
36300523 ATTGTAATAA
Statistics
Matches: 32, Mismatches: 8, Indels: 14
0.59 0.15 0.26
Matches are distributed among these distances:
18 9 0.28
19 1 0.03
20 2 0.06
21 2 0.06
22 2 0.06
23 2 0.06
24 1 0.03
25 13 0.41
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (25 bp):
GCAAGTGGTAATCATGGGATTTAAT
Found at i:36300515 original size:43 final size:43
Alignment explanation
Indices: 36300454--36300540 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
36300444 TGAATGAGCA
36300454 AGTGGTAATCATGGGATTTAATGCAAATTGTAATAATAGTATC
1 AGTGGTAATCATGGGATTTAATGCAAATTGTAATAATAGTATC
36300497 AGTGGTAATCATGGGATTTAATGCAAATTGTAATAATAGTATC
1 AGTGGTAATCATGGGATTTAATGCAAATTGTAATAATAGTATC
36300540 A
1 A
36300541 TTATGGACGG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (43 bp):
AGTGGTAATCATGGGATTTAATGCAAATTGTAATAATAGTATC
Found at i:36325762 original size:49 final size:51
Alignment explanation
Indices: 36325655--36325831 Score: 167
Period size: 50 Copynumber: 3.6 Consensus size: 51
36325645 AATGCAGATA
* * * ** * *
36325655 CCATGTCCCAGGCTTGGTCTTACACTG-GCTCAT-C-CAT-CAAGTCGATG
1 CCATGTCCCAGACATGGTCTTACACTGAGCTCATACAAATCCGGGCCGACG
36325702 CCATGTCCCAGACATGGTCTTACACTGA-CT-AT-CGAAAT-CGAGGCCGACG
1 CCATGTCCCAGACATGGTCTTACACTGAGCTCATAC-AAATCCG-GGCCGACG
* * * *
36325751 CCATGTCCCAGACATGGTCTTACACT-AGCTCTTACATATCCGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACTGAGCTCATACAAATCCGGGCCGACG
36325801 CCATGTCCCAGACATGGTCTTACACTG-GCTC
1 CCATGTCCCAGACATGGTCTTACACTGAGCTC
36325832 TCATAATGTG
Statistics
Matches: 110, Mismatches: 11, Indels: 15
0.81 0.08 0.11
Matches are distributed among these distances:
46 3 0.03
47 27 0.25
48 4 0.04
49 33 0.30
50 40 0.36
51 3 0.03
ACGTcount: A:0.22, C:0.32, G:0.20, T:0.25
Consensus pattern (51 bp):
CCATGTCCCAGACATGGTCTTACACTGAGCTCATACAAATCCGGGCCGACG
Found at i:36325819 original size:50 final size:51
Alignment explanation
Indices: 36325697--36325832 Score: 174
Period size: 50 Copynumber: 2.7 Consensus size: 51
36325687 TCCATCAAGT
*
36325697 CGATGCCATGTCCCAGACATGGTCTTACACTG-AC-TATCGAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGCTCTTATCGAAATCGAGGC
* * *
36325746 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTTA-C-ATATCCG-TGC
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCTTATCGAAAT-CGAGGC
36325796 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT
1 CGATGCCATGTCCCAGACATGGTCTTACACT-GCTCT
36325833 CATAATGTGG
Statistics
Matches: 77, Mismatches: 6, Indels: 7
0.86 0.07 0.08
Matches are distributed among these distances:
49 30 0.39
50 41 0.53
51 4 0.05
52 2 0.03
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (51 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGCTCTTATCGAAATCGAGGC
Found at i:36329508 original size:58 final size:61
Alignment explanation
Indices: 36329446--36329566 Score: 149
Period size: 61 Copynumber: 2.0 Consensus size: 61
36329436 AATCACTTTA
* * * *
36329446 ATATTAAATTATTATAATACTTA-T-CAAGATAAATATTATATTAAACTTAATATTA-AAT
1 ATATTAAACTAATAGAATACTTACTACAAGATAAATATTAAATTAAACTTAATATTACAAT
* * *
36329504 ATATTAAACTAATAGAATATTTATCTACAAGATAAATATTAAATTTAATTTAATATTACAAT
1 ATATTAAACTAATAGAATACTTA-CTACAAGATAAATATTAAATTAAACTTAATATTACAAT
36329566 A
1 A
36329567 ATTGCTTTAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
58 19 0.37
60 1 0.02
61 28 0.54
62 4 0.08
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.41
Consensus pattern (61 bp):
ATATTAAACTAATAGAATACTTACTACAAGATAAATATTAAATTAAACTTAATATTACAAT
Found at i:36332649 original size:21 final size:21
Alignment explanation
Indices: 36332624--36332663 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
36332614 AATAATTTAC
*
36332624 ATATATAACC-TTTATAATAAA
1 ATATAAAACCATTT-TAATAAA
36332645 ATATAAAACCATTTTAATA
1 ATATAAAACCATTTTAATA
36332664 TAAGGTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.38
Consensus pattern (21 bp):
ATATAAAACCATTTTAATAAA
Found at i:36340748 original size:12 final size:12
Alignment explanation
Indices: 36340731--36340782 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
36340721 ATCTACAAGA
36340731 TAAATATTATAT
1 TAAATATTATAT
*
36340743 TAAATATAATAT
1 TAAATATTATAT
36340755 TAAGATAATTA-AT
1 TAA-AT-ATTATAT
* *
36340768 TTAATATTAAAT
1 TAAATATTATAT
36340780 TAA
1 TAA
36340783 TAAAATACTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 4 0.12
12 20 0.61
13 6 0.18
14 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (12 bp):
TAAATATTATAT
Found at i:36340776 original size:11 final size:11
Alignment explanation
Indices: 36340739--36340825 Score: 53
Period size: 11 Copynumber: 8.1 Consensus size: 11
36340729 GATAAATATT
36340739 ATATTAAATATA
1 ATATTAAAT-TA
36340751 ATATTAAGA-T-
1 ATATTAA-ATTA
*
36340761 A-ATTAATTTA
1 ATATTAAATTA
36340771 ATATTAAATTA
1 ATATTAAATTA
36340782 ATA--AAA-TA
1 ATATTAAATTA
* *
36340790 CTATTAAGATAA
1 ATATTAA-ATTA
36340802 ATATTAAATTTA
1 ATATTAAA-TTA
36340814 AT-TTAATATTA
1 ATATTAA-ATTA
36340825 A
1 A
36340826 ATCTACTAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 21
0.69 0.07 0.24
Matches are distributed among these distances:
8 4 0.07
9 9 0.15
10 4 0.07
11 22 0.37
12 19 0.32
13 1 0.02
ACGTcount: A:0.54, C:0.01, G:0.02, T:0.43
Consensus pattern (11 bp):
ATATTAAATTA
Found at i:36340824 original size:48 final size:51
Alignment explanation
Indices: 36340740--36340838 Score: 143
Period size: 48 Copynumber: 2.0 Consensus size: 51
36340730 ATAAATATTA
36340740 TATTAAATATAATATTAAGATAATTAATTTAATATTAAAT-TAATAAAATAC
1 TATTAAATATAATATTAAGAT-ATTAATTTAATATTAAATCTAATAAAATAC
*
36340791 TATTAAGATA-AATATTAA-AT-TTAATTTAATATTAAATCTACTAAAATA
1 TATTAA-ATATAATATTAAGATATTAATTTAATATTAAATCTAATAAAATA
36340839 ATAGTATTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 6
0.87 0.02 0.12
Matches are distributed among these distances:
48 17 0.38
49 9 0.20
50 2 0.04
51 14 0.31
52 3 0.07
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (51 bp):
TATTAAATATAATATTAAGATATTAATTTAATATTAAATCTAATAAAATAC
Found at i:36340841 original size:68 final size:71
Alignment explanation
Indices: 36340700--36340841 Score: 157
Period size: 68 Copynumber: 2.0 Consensus size: 71
36340690 ATATTAAATT
* * * *
36340700 TATTAAATTAATAGAATATTTATCTACAAGATAAATATTATATTAAATATAATATTAAGATAATT
1 TATTAAATTAATAAAATATCTATCTA-AAGATAAATATTAAATTAAATATAATATTAAGATAACT
**
36340765 AATTTAA
65 AAAATAA
* * *
36340772 TATTAAATTAATAAAATA-CTAT-T-AAGATAAATATTAAATTTAATTTAATATTAA-ATCTACT
1 TATTAAATTAATAAAATATCTATCTAAAGATAAATATTAAATTAAATATAATATTAAGAT-AACT
36340833 AAAATAA
65 AAAATAA
36340840 TA
1 TA
36340842 GTATTTTTGA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
67 2 0.03
68 37 0.62
70 1 0.02
71 3 0.05
72 17 0.28
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.41
Consensus pattern (71 bp):
TATTAAATTAATAAAATATCTATCTAAAGATAAATATTAAATTAAATATAATATTAAGATAACTA
AAATAA
Found at i:36342376 original size:16 final size:15
Alignment explanation
Indices: 36342351--36342380 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
36342341 CTAGATCGGC
36342351 AAAAGCCGAAAAGCT
1 AAAAGCCGAAAAGCT
36342366 AAAATGCCGAAAAGC
1 AAAA-GCCGAAAAGC
36342381 CGGTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.20, G:0.20, T:0.07
Consensus pattern (15 bp):
AAAAGCCGAAAAGCT
Found at i:36342660 original size:28 final size:28
Alignment explanation
Indices: 36342620--36342683 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
36342610 TGTACTAGAG
*
36342620 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
36342648 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
36342676 TACCCCTA
1 TACCCCTA
36342684 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:36342830 original size:28 final size:28
Alignment explanation
Indices: 36342789--36342843 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
36342779 AGGAAGCGTC
*
36342789 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCTATGCCACAAAATATCTGTT
36342817 CTGGTGGC-ACTGCCACAAAATATCTGT
1 CTGGTGGCTA-TGCCACAAAATATCTGT
36342844 ATCTAGCGAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 1 0.04
28 24 0.96
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.31
Consensus pattern (28 bp):
CTGGTGGCTATGCCACAAAATATCTGTT
Found at i:36353124 original size:28 final size:28
Alignment explanation
Indices: 36353092--36353161 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 28
36353082 AATGAGATTG
36353092 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
** *
36353120 GCACTAAGTGTGATAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
36353148 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
36353162 GACTTACTAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
28 30 0.86
29 4 0.11
30 1 0.03
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:36360412 original size:28 final size:28
Alignment explanation
Indices: 36360372--36360435 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
36360362 TGTACTAGAG
*
36360372 TACCCCTATGTATGCAAAATTACCAT-TA
1 TACCCCTATGTATGCAAAATGACC-TCTA
36360400 TACCCCTATGTATGCAAAATGACCTCTA
1 TACCCCTATGTATGCAAAATGACCTCTA
36360428 TACCCCTA
1 TACCCCTA
36360436 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.33, C:0.30, G:0.08, T:0.30
Consensus pattern (28 bp):
TACCCCTATGTATGCAAAATGACCTCTA
Found at i:36360598 original size:27 final size:28
Alignment explanation
Indices: 36360551--36360630 Score: 108
Period size: 27 Copynumber: 2.9 Consensus size: 28
36360541 CTAGTGGCTA
* *
36360551 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
**
36360579 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGGCAC
36360606 TGCCACAAAATATCTGTATCTGGTG
1 TGCCACAAAATATCTGT-TCTGGTG
36360631 ACTCTGTCAC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 23 0.52
28 14 0.32
29 7 0.16
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGGCAC
Found at i:36360641 original size:29 final size:28
Alignment explanation
Indices: 36360551--36360641 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
36360541 CTAGTGGCTA
* * *
36360551 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
** *
36360579 TGCCAC-GTATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
36360606 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
36360635 TGTCACA
1 TGCCACA
36360642 TTTTCTGTAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.44
28 14 0.27
29 15 0.29
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:36360649 original size:55 final size:56
Alignment explanation
Indices: 36360551--36360655 Score: 133
Period size: 55 Copynumber: 1.9 Consensus size: 56
36360541 CTAGTGGCTA
* * *
36360551 TGCCACAAATTATCTGTTCTGGTGGCCCTGCCACGTATATCTGT-TCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
* * *
36360606 TGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTATCTGG
1 TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTATCTGG
36360656 CAGCCATGCT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
55 22 0.52
56 20 0.48
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (56 bp):
TGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTATCTGGTGGCAC
Found at i:36365792 original size:80 final size:80
Alignment explanation
Indices: 36365654--36365813 Score: 311
Period size: 80 Copynumber: 2.0 Consensus size: 80
36365644 CATTTGGCTA
*
36365654 AATTTCCCAATCACATACATTCAATCAAACATGTTAGTCACCAAAATATTCATATCAATCAAGTA
1 AATTGCCCAATCACATACATTCAATCAAACATGTTAGTCACCAAAATATTCATATCAATCAAGTA
36365719 ACATAGATGAGCTCT
66 ACATAGATGAGCTCT
36365734 AATTGCCCAATCACATACATTCAATCAAACATGTTAGTCACCAAAATATTCATATCAATCAAGTA
1 AATTGCCCAATCACATACATTCAATCAAACATGTTAGTCACCAAAATATTCATATCAATCAAGTA
36365799 ACATAGATGAGCTCT
66 ACATAGATGAGCTCT
36365814 CCAAGTAGTA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 79 1.00
ACGTcount: A:0.41, C:0.23, G:0.08, T:0.28
Consensus pattern (80 bp):
AATTGCCCAATCACATACATTCAATCAAACATGTTAGTCACCAAAATATTCATATCAATCAAGTA
ACATAGATGAGCTCT
Found at i:36371949 original size:43 final size:43
Alignment explanation
Indices: 36371848--36371939 Score: 148
Period size: 43 Copynumber: 2.1 Consensus size: 43
36371838 CACATGGCCA
* *
36371848 TGTGTCTAGACCGTGTGTGACACACGGTCTGCCCCAATGGGCG
1 TGTGTCTAGACCGTGTGTAACACACGGTCTGCCCCAATCGGCG
* *
36371891 TGTGTCTAGACCGTGTGTAACACACGGTCTGCCCCCATCGGTG
1 TGTGTCTAGACCGTGTGTAACACACGGTCTGCCCCAATCGGCG
36371934 TGTGTC
1 TGTGTC
36371940 ATGGCCGTGT
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.15, C:0.28, G:0.30, T:0.26
Consensus pattern (43 bp):
TGTGTCTAGACCGTGTGTAACACACGGTCTGCCCCAATCGGCG
Found at i:36373099 original size:46 final size:46
Alignment explanation
Indices: 36372910--36373121 Score: 198
Period size: 46 Copynumber: 4.6 Consensus size: 46
36372900 AGATTTGTGT
* * *
36372910 GCCAGTGTAAGACATGTCTGGGACATGTATCGGCCAT-ATTATGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TCATGATGAGA
* * * *
36372956 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGA-GATGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCATGATGAGA
* ** * *
36373004 GCTAGTGTAAGACATGTCTGGGACATGCATCATCCACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGAGA
* * **
36373050 GCCAGTGTAACACATGTCTGGGACATGCATTGGCCTCGA-GATGTTA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTC-ATGATGAGA
36373096 GCCAGTGTCAA-ACATGTCTGGGACAT
1 GCCAGTGT-AAGACATGTCTGGGACAT
36373122 ACGTCGGCTA
Statistics
Matches: 135, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
46 81 0.60
47 29 0.21
48 23 0.17
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCATGATGAGA
Found at i:36373136 original size:46 final size:46
Alignment explanation
Indices: 36372910--36373165 Score: 139
Period size: 46 Copynumber: 5.6 Consensus size: 46
36372900 AGATTTGTGT
* ** * *
36372910 GCCAGTGTAAGACATGTCTGGGACATGTATCGGCCAT--ATTATGATA
1 GCCAGTGTAACACATGTCTGGGACATACATCGGCC-TCGA-GATGTTA
* * * * * ***
36372956 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGATGAGG
1 GCCAGTGTAACA-CATGTCTGGGACAT-ACATCGGCCTCGAGATGTTA
* * * ** * * **
36373004 GCTAGTGTAAGACATGTCTGGGACATGCATCATCCAC-ATTATGAGA
1 GCCAGTGTAACACATGTCTGGGACATACATCGGCCTCGA-GATGTTA
* *
36373050 GCCAGTGTAACACATGTCTGGGACATGCATTGGCCTCGAGATGTTA
1 GCCAGTGTAACACATGTCTGGGACATACATCGGCCTCGAGATGTTA
*
36373096 GCCAGTGTCAA-ACATGTCTGGGACATACGTCGG-CTACGAGATG-T-
1 GCCAGTGT-AACACATGTCTGGGACATACATCGGCCT-CGAGATGTTA
* * * *
36373140 GCTAGTGTAAGACATTTATGGGACAT
1 GCCAGTGTAACACATGTCTGGGACAT
36373166 GTATCAGCAC
Statistics
Matches: 171, Mismatches: 30, Indels: 20
0.77 0.14 0.09
Matches are distributed among these distances:
43 2 0.01
44 20 0.12
45 4 0.02
46 92 0.54
47 30 0.18
48 22 0.13
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (46 bp):
GCCAGTGTAACACATGTCTGGGACATACATCGGCCTCGAGATGTTA
Found at i:36386591 original size:29 final size:29
Alignment explanation
Indices: 36386531--36386598 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
36386521 CGAAGTACTG
* *
36386531 ATAT-CATGGCCCGAAGCCAAATTAGTCA
1 ATATGCATGGCCCAAAGCCAAATTAGCCA
* *
36386559 ATATGTATGGCCCAAAGCCAAATCT-GCCG
1 ATATGCATGGCCCAAAGCCAAAT-TAGCCA
36386588 ATATGCATGGC
1 ATATGCATGGC
36386599 TTGAAGCCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
28 4 0.12
29 28 0.85
30 1 0.03
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.22
Consensus pattern (29 bp):
ATATGCATGGCCCAAAGCCAAATTAGCCA
Found at i:36388017 original size:46 final size:46
Alignment explanation
Indices: 36387954--36388266 Score: 423
Period size: 46 Copynumber: 6.8 Consensus size: 46
36387944 TTCGACATGA
* * * * * *
36387954 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCACGT
* ** ***
36388000 TGCCATGGTATCATTCAACCATGGTCTTATTCATTTCCCCGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT-CATATCACGT
*
36388047 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
*
36388093 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
* *
36388139 TGCCATGGTATCTTTCACCCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
*
36388185 TGCCATGGTATCTTTCAACCATGGTCTTACACGTTTCATATCA-GCT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACG-T
*
36388231 TGCTATGGTATCTTTCAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTT
36388267 TCTATCAGAG
Statistics
Matches: 245, Mismatches: 19, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
45 4 0.02
46 202 0.82
47 39 0.16
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCACGT
Found at i:36390429 original size:11 final size:11
Alignment explanation
Indices: 36390413--36390464 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
36390403 TATACTAAAT
36390413 AAATAATAATA
1 AAATAATAATA
*
36390424 AAATAAT-ATT
1 AAATAATAATA
* *
36390434 AAATATCTCATA
1 AAATA-ATAATA
*
36390446 AAATATTAATA
1 AAATAATAATA
36390457 AAATAATA
1 AAATAATA
36390465 TTTATCTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 7 0.21
11 19 0.58
12 7 0.21
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (11 bp):
AAATAATAATA
Found at i:36392622 original size:41 final size:40
Alignment explanation
Indices: 36392515--36392622 Score: 110
Period size: 41 Copynumber: 2.6 Consensus size: 40
36392505 GATATTCGGG
* * * *
36392515 CTTTGAGCCTAGCAAGTCTTGTGCTGGTGAATTAAATCAGG
1 CTTTGAGCCTAGC-AGGCTTGTGCCGGTGAATAAAATCAGA
* *
36392556 CTTT-ATGCCTAGCAGGCTTATTGCCGGTGTATAAAATCAGA
1 CTTTGA-GCCTAGCAGGCTT-GTGCCGGTGAATAAAATCAGA
*
36392597 CTTTGAGTCTAGCAGGCATTGTGCCG
1 CTTTGAGCCTAGCAGGC-TTGTGCCG
36392623 ATGTGTGATA
Statistics
Matches: 55, Mismatches: 8, Indels: 8
0.77 0.11 0.11
Matches are distributed among these distances:
40 6 0.11
41 46 0.84
42 3 0.05
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.31
Consensus pattern (40 bp):
CTTTGAGCCTAGCAGGCTTGTGCCGGTGAATAAAATCAGA
Found at i:36395132 original size:28 final size:29
Alignment explanation
Indices: 36395099--36395199 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
36395089 TATAGTAAGT
* * *
36395099 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
36395127 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
36395156 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
36395185 CCGCACATTTAGTGC
1 CCGCACACTTAGTGC
36395200 CAATTTCATG
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:36402298 original size:20 final size:20
Alignment explanation
Indices: 36402275--36402314 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
36402265 AAATAAGATA
36402275 AATAAAG-ATAAAATAAAAAT
1 AATAAAGAAT-AAATAAAAAT
*
36402295 AATAAATAATAAATAAAAAT
1 AATAAAGAATAAATAAAAAT
36402315 TTTTTAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.23
Consensus pattern (20 bp):
AATAAAGAATAAATAAAAAT
Found at i:36419434 original size:47 final size:46
Alignment explanation
Indices: 36419126--36419434 Score: 246
Period size: 47 Copynumber: 6.6 Consensus size: 46
36419116 TTTGTATGCT
*
36419126 AGTGTAAGA-CGTGTCTGGGACAT-GCATCAGCCACATT-ATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--ACATTGATGAGAGCC
* *
36419172 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAAACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTG--ATGAGAGCC
* * * * *
36419220 AGTATAAGA-CACGTCTAGGACAT-G-ATTC-AGCCTCGA-GATGTAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-TCGA-CATTGATGA-G--AGCC
* *
36419266 AGTGTAAGA-CATGTCTGGGACAT-GCATTGACCACATT-ATCAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCA-T--CGACATTGATGAGAGCC
* * *
36419312 AGTGTAAGACCATGTCTGGGACATGGCATTGACATAGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTG--A--TGAGAGCC
36419362 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAT-GA-GAGCC
36419409 AGTGTAAGACCATGTCTGGGACATGG
1 AGTGTAAGACCATGTCTGGGACATGG
36419435 TATCAGCATT
Statistics
Matches: 216, Mismatches: 23, Indels: 47
0.76 0.08 0.16
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 12 0.06
46 54 0.25
47 75 0.35
48 26 0.12
49 6 0.03
50 39 0.18
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGATGAGAGCC
Found at i:36421304 original size:43 final size:43
Alignment explanation
Indices: 36421256--36421338 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
36421246 GAGATATGTG
**
36421256 GCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGATGCTC
1 GCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGCTC
36421299 GCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATG
1 GCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATG
36421339 TGTTTCATGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGAGGTCCAAGTTCATTATGGATGCTC
Found at i:36424166 original size:38 final size:38
Alignment explanation
Indices: 36424115--36424193 Score: 140
Period size: 38 Copynumber: 2.1 Consensus size: 38
36424105 TTACAACTTA
*
36424115 AACCACACCAAAATTTCCACGCCCAATGTAGTCCATAC
1 AACCACACCAAAATTTCCACGCCCAATGTAATCCATAC
*
36424153 AACCACACCAAAATTTCCACGCCTAATGTAATCCATAC
1 AACCACACCAAAATTTCCACGCCCAATGTAATCCATAC
36424191 AAC
1 AAC
36424194 TTTATATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.39, C:0.35, G:0.06, T:0.19
Consensus pattern (38 bp):
AACCACACCAAAATTTCCACGCCCAATGTAATCCATAC
Done.