Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 118 of 290
Found at i:36813413 original size:26 final size:26
Alignment explanation
Indices: 36813384--36813503 Score: 107
Period size: 26 Copynumber: 4.5 Consensus size: 26
36813374 TTAGTTTACC
36813384 AAATTACTGAAATACCCCCAATTGTA
1 AAATTACTGAAATACCCCCAATTGTA
* ** *
36813410 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAA-TACCCCC-AATTGTA
* ****
36813437 AAATTACCGAAATACCGTTGATTGTA
1 AAATTACTGAAATACCCCCAATTGTA
* *
36813463 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCC-CCAATTGTA
36813490 AAATTACTGAAATA
1 AAATTACTGAAATA
36813504 TTCCTGTAAG
Statistics
Matches: 74, Mismatches: 16, Indels: 7
0.76 0.16 0.07
Matches are distributed among these distances:
25 3 0.04
26 34 0.46
27 34 0.46
28 3 0.04
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (26 bp):
AAATTACTGAAATACCCCCAATTGTA
Found at i:36813442 original size:53 final size:53
Alignment explanation
Indices: 36813384--36813503 Score: 143
Period size: 53 Copynumber: 2.3 Consensus size: 53
36813374 TTAGTTTACC
*
36813384 AAATTACTGAAATACCCCCAATTGTAAAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAATACCCCCAATTGTAAAATTACTCAAA-TACCCCCGATTTATA
* **** * * *
36813437 AAATTACCGAAATACCGTTGATTGTAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCCCAATTGTAAAATTACTCAAATACCCCCGATTTATA
36813490 AAATTACTGAAATA
1 AAATTACTGAAATA
36813504 TTCCTGTAAG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
53 53 0.95
54 3 0.05
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (53 bp):
AAATTACTGAAATACCCCCAATTGTAAAATTACTCAAATACCCCCGATTTATA
Found at i:36813496 original size:27 final size:27
Alignment explanation
Indices: 36813384--36813503 Score: 129
Period size: 27 Copynumber: 4.5 Consensus size: 27
36813374 TTAGTTTACC
* *
36813384 AAATTACTGAAATACCC-CCAATTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
36813410 AAATTAC-CAAAGTACCCCCGGTTTATA
1 AAATTACTGAAA-TACCCTCGATTTGTA
* * *
36813437 AAATTACCGAAATACCGTTGA-TTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
36813463 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
36813490 AAATTACTGAAATA
1 AAATTACTGAAATA
36813504 TTCCTGTAAG
Statistics
Matches: 76, Mismatches: 14, Indels: 7
0.78 0.14 0.07
Matches are distributed among these distances:
25 3 0.04
26 34 0.45
27 36 0.47
28 3 0.04
ACGTcount: A:0.41, C:0.19, G:0.11, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:36813546 original size:27 final size:27
Alignment explanation
Indices: 36813514--36813739 Score: 326
Period size: 27 Copynumber: 8.4 Consensus size: 27
36813504 TTCCTGTAAG
*
36813514 ATAGAATTACCATTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* * * **
36813541 ACAGAATTATCGTTTTACCCAAGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
*
36813568 ATAGAATTACCATTTTACCTTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* *
36813595 ATAGAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
36813622 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* * *
36813649 ACAGAATTACCGTCTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
36813676 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
36813703 ATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTT
* *
36813730 ACAAAATTAC
1 ATAGAATTAC
36813740 TGAAATACCT
Statistics
Matches: 174, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 174 1.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39
Consensus pattern (27 bp):
ATAGAATTACCATTTTACCCTCGATTT
Found at i:36813748 original size:27 final size:27
Alignment explanation
Indices: 36813610--36813858 Score: 128
Period size: 27 Copynumber: 9.2 Consensus size: 27
36813600 ATTATCGTTT
* * ***
36813610 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCAAAA
* * ****
36813637 TACCCTCGATTTACAGAATTACCGTCT
1 TACCCTCGATTTAAAAAATTACCAAAA
* * ***
36813664 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCAAAA
* * ***
36813691 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTAAAAAATTACCAAAA
* **
36813718 TACCCTCGATTTACAAAATTACTGAAA
1 TACCCTCGATTTAAAAAATTACCAAAA
**
36813745 TA-CCTTTAGTTTAAAAAATTACCAAAA
1 TACCCTCGA-TTTAAAAAATTACCAAAA
*
36813772 TACCCTCGA-TCAATAAAATTACCAAAA
1 TACCCTCGATTTAA-AAAATTACCAAAA
* **
36813799 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTAAAAAATTACCAAAA
*** *
36813826 TACCC-CTGATTTGTGAAATTACCGAAA
1 TACCCTC-GATTTAAAAAATTACCAAAA
36813853 TACCCT
1 TACCCT
36813859 TGTAGGATAG
Statistics
Matches: 187, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
26 9 0.05
27 172 0.92
28 6 0.03
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (27 bp):
TACCCTCGATTTAAAAAATTACCAAAA
Found at i:36813765 original size:54 final size:54
Alignment explanation
Indices: 36813718--36813830 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
36813708 ATTACCATTT
** ** **
36813718 TACCCTCGATTTACAAAATTACTGAAATACCTTTAGTTTAAAAAATTACCAAAA
1 TACCCTCGATCAACAAAATTACCAAAATACCCCTAGTTTAAAAAATTACCAAAA
* **
36813772 TACCCTCGATCAATAAAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTCGATCAACAAAATTACCAAAATACCCCTAGTTTAAAAAATTACCAAAA
36813826 TACCC
1 TACCC
36813831 CTGATTTGTG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.28
Consensus pattern (54 bp):
TACCCTCGATCAACAAAATTACCAAAATACCCCTAGTTTAAAAAATTACCAAAA
Found at i:36813776 original size:81 final size:81
Alignment explanation
Indices: 36813610--36813795 Score: 221
Period size: 81 Copynumber: 2.3 Consensus size: 81
36813600 ATTATCGTTT
* *** *
36813610 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCGTCTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGAAATACCCTAGATT
* * ***
36813675 TATAGAATTACCATTT
66 TAAAAAATTACCAAAA
* *
36813691 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACTGAAATACCTTTAG-T
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGAAATACC-CTAGAT
36813755 TTAAAAAATTACCAAAA
65 TTAAAAAATTACCAAAA
** *
36813772 TACCCTCGATCAATAAAATTACCA
1 TACCCTCGATTTATAGAATTACCA
36813796 AAATACCCCT
Statistics
Matches: 89, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 87 0.98
82 2 0.02
ACGTcount: A:0.35, C:0.23, G:0.07, T:0.35
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAATTACCGAAATACCCTAGATT
TAAAAAATTACCAAAA
Found at i:36813872 original size:27 final size:27
Alignment explanation
Indices: 36813842--36814278 Score: 558
Period size: 27 Copynumber: 16.2 Consensus size: 27
36813832 TGATTTGTGA
* *
36813842 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
36813869 AATTATTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36813896 AATTACGGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36813923 AATTA-CTAGAATACCCCTGTAGGGTAA
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
36813950 AATTACC-AGAATACCCCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
36813977 AATTACC-AGAATACCTCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
36814004 AATTACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36814031 AATCACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36814058 AATTACCAAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36814085 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
36814112 AATTATCGCAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36814139 AATTACC-AGGATATCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* * *
36814166 AATTACCGAAATACCCTTATAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36814193 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36814220 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36814247 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
36814274 AATTA
1 AATTA
36814279 TCGAGATGCC
Statistics
Matches: 361, Mismatches: 44, Indels: 10
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.00
27 357 0.99
28 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:36813873 original size:54 final size:54
Alignment explanation
Indices: 36813788--36814278 Score: 576
Period size: 54 Copynumber: 9.1 Consensus size: 54
36813778 CGATCAATAA
* ** * **
36813788 AATTACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGT-G
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTACCAAAATACCCCTGTA-GGGTAG
* * *** *
36813841 AAATTACCGAAATACCCTTGTAGGATAGAATTATTGAAATACCCTTGTAGGGTAG
1 -AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * * *
36813896 AATTACGGAAATACCCCTGTAGGGTAGAATTACTAGAATACCCCTGTAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * *
36813950 AATTACC-AGAATACCCCTATAGGGTAGAATTACCAGAATACCTCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * * *
36814004 AATTACCGAAATACCCCTGTATGGTAGAATCACCGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* *
36814058 AATTACCAAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * * ** *
36814112 AATTATCGCAATACCCTTGTAGGGTAGAATTACCAGGATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * *
36814166 AATTACCGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * * *
36814220 AATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
36814274 AATTA
1 AATTA
36814279 TCGAGATGCC
Statistics
Matches: 376, Mismatches: 56, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
53 3 0.01
54 370 0.98
55 3 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:36813873 original size:81 final size:82
Alignment explanation
Indices: 36813788--36814278 Score: 534
Period size: 81 Copynumber: 6.1 Consensus size: 82
36813778 CGATCAATAA
** * **
36813788 AATTACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCCTG-ATTTGT-GAAATTACCG
1 AATTACCAAAATACCCCTAGTAGGGTAGAATTACCAAAATACCCCTGTA-GGGTAG-AATTACCG
*
36813850 AAATACCCTTGTAGGATAG
64 AAATACCCCTGTAGGATAG
*** * ** *
36813869 AATTATTGAAATA-CCCTTGTAGGGTAGAATTACGGAAATACCCCTGTAGGGTAGAATTA-CTAG
1 AATTACCAAAATACCCCTAGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGA-
* *
36813932 AATACCCCTGTAGGGTAA
65 AATACCCCTGTAGGATAG
* * *
36813950 AATTACCAGAATACCCCTA-TAGGGTAGAATTACCAGAATACCTCTGTAGGGTAGAATTACCGAA
1 AATTACCAAAATACCCCTAGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
36814014 ATACCCCTGTATGG-TAG
66 ATACCCCTGTA-GGATAG
* * * * *
36814031 AATCACCGAAATACCCCT-GTATGGTAGAATTACCAAAATACCCCTGTATGGTAGAATTACCAAA
1 AATTACCAAAATACCCCTAGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
36814095 ATACCCCTGTAGGGTAG
66 ATACCCCTGTAGGATAG
* ** * ** *
36814112 AATTATCGCAATA-CCCTTGTAGGGTAGAATTACCAGGATATCCCTGTAGGGTAGAATTACCGAA
1 AATTACCAAAATACCCCTAGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
* *
36814176 ATACCCTTATAGGATAG
66 ATACCCCTGTAGGATAG
* * * *
36814193 AATTACCAAAATACCCCT-GTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAA
1 AATTACCAAAATACCCCTAGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
*
36814257 ATACCCCTGTAGGGTAG
66 ATACCCCTGTAGGATAG
36814274 AATTA
1 AATTA
36814279 TCGAGATGCC
Statistics
Matches: 340, Mismatches: 59, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
80 14 0.04
81 312 0.92
82 14 0.04
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (82 bp):
AATTACCAAAATACCCCTAGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
ATACCCCTGTAGGATAG
Found at i:36814315 original size:27 final size:27
Alignment explanation
Indices: 36814285--36814350 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
36814275 ATTATCGAGA
*
36814285 TGCCCTTATGGGGTAAAATTACCATTT
1 TGCCCTTATGGGGTAAAATGACCATTT
* * * **
36814312 TGCCCCTATGGTGTTAAATGACTGTTT
1 TGCCCTTATGGGGTAAAATGACCATTT
*
36814339 TGCCCTTGTGGG
1 TGCCCTTATGGG
36814351 CAAGTGACTG
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.18, C:0.20, G:0.24, T:0.38
Consensus pattern (27 bp):
TGCCCTTATGGGGTAAAATGACCATTT
Found at i:36814549 original size:27 final size:27
Alignment explanation
Indices: 36814507--36814585 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
36814497 GGAGGAAGCG
*
36814507 TTCTGGTGGCTATGCCACAAATATCTA
1 TTCTGGTGGCTCTGCCACAAATATCTA
* *
36814534 TTCTGGTGGCTCTGCCACAATATTTGTA
1 TTCTGGTGGCTCTGCCACAA-ATATCTA
* *
36814562 TT-TGGTGACTCTGTCAC-AATATCT
1 TTCTGGTGGCTCTGCCACAAATATCT
36814586 GTTGACCGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
25 4 0.09
26 1 0.02
27 32 0.73
28 7 0.16
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAAATATCTA
Found at i:36814708 original size:22 final size:22
Alignment explanation
Indices: 36814676--36814734 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
36814666 CCCGTTATTA
*
36814676 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
36814698 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
36814720 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
36814735 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:36814921 original size:27 final size:27
Alignment explanation
Indices: 36814899--36814972 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
36814889 TAGGTGGGTT
*
36814899 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
* *
36814926 TGCCATAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
36814953 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
36814973 CAGCCATGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.12
27 34 0.85
28 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:36815099 original size:6 final size:6
Alignment explanation
Indices: 36815090--36815282 Score: 175
Period size: 6 Copynumber: 31.8 Consensus size: 6
36815080 TTGCATTCAC
* *
36815090 ATTCTG ATTCTG ATTCTG -TCACGTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
36815139 -TTACTA ATACTG ATTCTG ATTCTG ATTCTG -TTATTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * * *
36815187 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTTTG -TTACTA ATAT-TG
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG AT-TCTG
36815236 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
36815283 CATTTTGGTT
Statistics
Matches: 153, Mismatches: 18, Indels: 32
0.75 0.09 0.16
Matches are distributed among these distances:
5 11 0.07
6 129 0.84
7 10 0.07
8 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:36815231 original size:85 final size:85
Alignment explanation
Indices: 36815090--36815277 Score: 308
Period size: 85 Copynumber: 2.2 Consensus size: 85
36815080 TTGCATTCAC
*
36815090 ATTCTGATTCTGATTCTGTCACGTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
*
36815155 TGATTCTGATTCTG-TTATTG
66 TGATTCTGATTCTGATT-CTG
* *
36815175 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTTTGTTACTAATATTGATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
36815240 TGATTCTGATTCTGATTCTG
66 TGATTCTGATTCTGATTCTG
36815260 -TTACTGATTCTGATTCTG
1 ATT-CTGATTCTGATTCTG
36815278 ATTCTCATTT
Statistics
Matches: 97, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
84 2 0.02
85 93 0.96
86 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTGATTC
TGATTCTGATTCTGATTCTG
Found at i:36815303 original size:36 final size:34
Alignment explanation
Indices: 36815173--36815303 Score: 116
Period size: 36 Copynumber: 3.9 Consensus size: 34
36815163 ATTCTGTTAT
* * *
36815173 TGATTCTGATTCTGATTCTG-TC-A-CCTAATTC
1 TGATTCTGATTCTGATTTTGTTCAATTCTGATTC
36815204 TGATTCTGATTCTGATTTTGTTACTAATAT-TGATTC
1 TGATTCTGATTCTGATTTTGTT-C-AAT-TCTGATTC
*
36815240 TGATTCTGATTCTGATTCTGTT--A--CTGATTC
1 TGATTCTGATTCTGATTTTGTTCAATTCTGATTC
*
36815270 TGATTCTGATTCTCATTTTGGTTCCAATTCTGAT
1 TGATTCTGATTCTGATTTT-GTT-CAATTCTGAT
36815304 AATGTTTCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 21
0.75 0.06 0.19
Matches are distributed among these distances:
30 23 0.28
31 22 0.27
32 2 0.02
33 1 0.01
34 1 0.01
35 1 0.01
36 31 0.38
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.50
Consensus pattern (34 bp):
TGATTCTGATTCTGATTTTGTTCAATTCTGATTC
Found at i:36817401 original size:54 final size:53
Alignment explanation
Indices: 36817252--36817425 Score: 201
Period size: 53 Copynumber: 3.3 Consensus size: 53
36817242 TTAGTTTACC
** * * * *
36817252 AAATTACTAAAATACCCCCAGTTGTAAAATTAC-CAAAGTACCC-CCAGTTTATA
1 AAATTACCGAAATACCCTCAGTTGTAAAATTACTGAAA-TACCCTCGA-TTTGTA
* *
36817305 AAATTACCGAAATACCGT-TGATTGTAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAG-TTGTAAAATTACTGAAATACCCTCGATTTGTA
*
36817358 AAATTACCGAAATACCCTCAGTTTGCAAAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCGAAATACCCTCAG-TTGTAAAATTACTGAAATACCCTCGATTTGTA
*
36817412 AAATTACTGAAATA
1 AAATTACCGAAATA
36817426 TTCCTGTAAG
Statistics
Matches: 104, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
52 1 0.01
53 53 0.51
54 50 0.48
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (53 bp):
AAATTACCGAAATACCCTCAGTTGTAAAATTACTGAAATACCCTCGATTTGTA
Found at i:36817402 original size:27 final size:27
Alignment explanation
Indices: 36817252--36817425 Score: 187
Period size: 27 Copynumber: 6.5 Consensus size: 27
36817242 TTAGTTTACC
* *
36817252 AAATTACTAAAATACCCCCAG-TTGTA
1 AAATTACTGAAATACCCTCAGTTTGTA
* * *
36817278 AAATTAC-CAAAGTACCCCCAGTTTATA
1 AAATTACTGAAA-TACCCTCAGTTTGTA
* * * *
36817305 AAATTACCGAAATACCGT-TGATTGTA
1 AAATTACTGAAATACCCTCAGTTTGTA
36817331 AAATTACTGAAATACCCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAG-TTTGTA
* *
36817358 AAATTACCGAAATACCCTCAGTTTGCA
1 AAATTACTGAAATACCCTCAGTTTGTA
36817385 AAATTACTGAAATACCCTC-GATTTGTA
1 AAATTACTGAAATACCCTCAG-TTTGTA
36817412 AAATTACTGAAATA
1 AAATTACTGAAATA
36817426 TTCCTGTAAG
Statistics
Matches: 126, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
25 3 0.02
26 39 0.31
27 80 0.63
28 4 0.03
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAGTTTGTA
Found at i:36817468 original size:27 final size:27
Alignment explanation
Indices: 36817438--36817661 Score: 286
Period size: 27 Copynumber: 8.3 Consensus size: 27
36817428 CCTGTAAGAT
*
36817438 AGAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * ** *
36817465 AGAATTATCGTTTTACCCAAGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* *
36817492 AGAATTACCATTTTACCTTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
* * *
36817519 AGAATTATCGTTTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
36817546 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* * * *
36817573 AGAATTATCGTCTTACCCTCGATTTAT
1 AGAATTACCATTTTACCCTCGATTTAC
36817600 AGAATTACCATTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
36817627 AAAATTACCATTTTACCCTCAATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
*
36817654 AAAATTAC
1 AGAATTAC
36817662 TGAAATACCT
Statistics
Matches: 170, Mismatches: 27, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 170 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:36817494 original size:54 final size:54
Alignment explanation
Indices: 36817436--36817661 Score: 344
Period size: 54 Copynumber: 4.2 Consensus size: 54
36817426 TTCCTGTAAG
* **
36817436 ATAGAATTACCATTTTACCCTCAATTTACAGAATTATCGTTTTACCCAAGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTT
* *
36817490 ATAGAATTACCATTTTACCTTCGATTTATAGAATTATCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTT
*
36817544 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTCTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTT
* * * *
36817598 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTT
* *
36817652 ACAAAATTAC
1 ATAGAATTAC
36817662 TGAAATACCT
Statistics
Matches: 157, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 157 1.00
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTATCGTTTTACCCTCGATTT
Found at i:36817670 original size:27 final size:26
Alignment explanation
Indices: 36817532--36817752 Score: 84
Period size: 27 Copynumber: 8.2 Consensus size: 26
36817522 ATTATCGTTT
* * ***
36817532 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTA-CAAAA
* ****
36817559 TACCCTCGATTTACAGAATTATCGTCT
1 TACCCTCGATTTACAAAATTA-CAAAA
* * ***
36817586 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAAAATTA-CAAAA
***
36817613 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTA-CAAAA
* *
36817640 TACCCTCAATTTACAAAATTACTGAAA
1 TACCCTCGATTTACAAAATTAC-AAAA
* * *
36817667 TACCTTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTACAAAATTA-CAAAA
** **
36817694 TACCCTCGATCAATGAAATTACCAAAA
1 TACCCTCGATTTACAAAATTA-CAAAA
* **
36817721 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTACAAAATTA-CAAAA
36817748 TACCC
1 TACCC
36817753 CTAATTTGTG
Statistics
Matches: 159, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
26 3 0.02
27 155 0.97
28 1 0.01
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.33
Consensus pattern (26 bp):
TACCCTCGATTTACAAAATTACAAAA
Found at i:36817687 original size:81 final size:81
Alignment explanation
Indices: 36817436--36817690 Score: 273
Period size: 81 Copynumber: 3.1 Consensus size: 81
36817426 TTCCTGTAAG
* * * * *
36817436 ATAGAATTACCATTTTACCCTCAATTTACAGAATTATCGTTTTACCC-AAGATTTATAGAATTAC
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCA-ATTTACAGAATTAC
* *
36817500 -CATTTTACCTTCGATTT
65 TGA-ATTACCTTCGATTT
* * * *
36817517 ATAGAATTATCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTA-T
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACT
** *
36817581 CGTCTTACCCTCGATTT
66 -GAATTACCTTCGATTT
* *
36817598 ATAGAATTACCATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCAATTTACAAAATTACT
1 ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACT
* * *
36817663 GAAATACCTTTGGTTT
66 GAATTACCTTCGATTT
* *
36817679 ACAAAATTACCA
1 ATAGAATTACCA
36817691 AAATACCCTC
Statistics
Matches: 143, Mismatches: 27, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
81 142 0.99
82 1 0.01
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.39
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAGAATTACT
GAATTACCTTCGATTT
Found at i:36817753 original size:27 final size:27
Alignment explanation
Indices: 36817709--36817779 Score: 115
Period size: 27 Copynumber: 2.6 Consensus size: 27
36817699 TCGATCAATG
*
36817709 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAATTTGTA
*
36817736 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTAATTTGTA
*
36817763 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
36817780 TTGTAGGATA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAATTTGTA
Found at i:36817794 original size:27 final size:27
Alignment explanation
Indices: 36817764--36818228 Score: 481
Period size: 27 Copynumber: 17.3 Consensus size: 27
36817754 TAATTTGTGA
* *
36817764 AATTACCGAAATACCCTTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
36817791 AATTATTGAAATACCCTTGTAGGGTTA-
1 AATTACCGAAATACCCCTGTAGGG-TAG
*
36817818 AATTACTGAAATA-CCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36817844 AATTA-CTAGAATACCCTTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
36817871 AATTACC-AGAATACCCCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
36817898 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
36817925 AATTACTAAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36817952 AATTACCAAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36817979 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * **
36818006 AATTATCGCAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36818033 AATTACCAAAATACCCCTGTTGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
36818060 AATTACC-AGGATATCCCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* * * * * *
36818087 AATTGCCGAAACACCCTTATAGGATAA
1 AATTACCGAAATACCCCTGTAGGGTAG
*
36818114 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36818141 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
36818168 AAATACCGAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * * *
36818195 AGTTACCGAGAGACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
36818222 AATTACC
1 AATTACC
36818229 ATTTTGCCCC
Statistics
Matches: 370, Mismatches: 60, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
25 3 0.01
26 19 0.05
27 343 0.93
28 5 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:36817795 original size:54 final size:54
Alignment explanation
Indices: 36817710--36818229 Score: 444
Period size: 54 Copynumber: 9.6 Consensus size: 54
36817700 CGATCAATGA
** * * *
36817710 AATTACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCCTAATTTGTG-A-
1 AATTACCAAAATACCCCT-GTAGGGTAGAATTACCAAAATACCCCT--TTAGGGTAG
* * * ***
36817764 AATTACCGAAATACCCTTGTAGGATAGAATTATTGAAATA-CCCTTGTAGGGTTA-
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTT-TAGGG-TAG
** * *
36817818 AATTACTGAAATA-CCCTGTAGGGTAGAATTACTAGAATA-CCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTT-TAGGGTAG
* * *
36817871 AATTACCAGAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTTTAGGGTAG
* * * *
36817925 AATTACTAAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTATGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTTTAGGGTAG
* ** *
36817979 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGCAATA-CCTTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTT-TAGGGTAG
* ** * *
36818033 AATTACCAAAATACCCCTGTTGGGTAGAATTACCAGGATATCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTTTAGGGTAG
* * * * * * * *
36818087 AATTGCCGAAACACCCTTATAGGATAAAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTTTAGGGTAG
* * * * * * *
36818141 AATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAATATCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTTTAGGGTAG
* * * * * * *
36818195 AGTTACCGAGAGACCCTTGTGGGGTAAAATTACCA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCA
36818230 TTTTGCCCCT
Statistics
Matches: 384, Mismatches: 73, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
51 1 0.00
52 5 0.01
53 51 0.13
54 320 0.83
55 7 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTTTAGGGTAG
Found at i:36817795 original size:81 final size:81
Alignment explanation
Indices: 36817710--36818201 Score: 498
Period size: 81 Copynumber: 6.1 Consensus size: 81
36817700 CGATCAATGA
* * * **
36817710 AATTACCAAAATACCCCTAGT-TTGTAAAATTACCAAAATACCCCT-AATTTGT-GAAATTACCG
1 AATTACCAAAATACCCCT-GTATGGTAGAATTACCAAAATACCCCTGTA-GGGTAG-AATTACCG
36817772 AAATACCCTTGTAGGATAG
63 AAATACCCTTGTAGGATAG
*** * * ** *
36817791 AATTATTGAAATACCCTTGTAGGGTTA-AATTACTGAAATA-CCCTGTAGGGTAGAATTA-CTAG
1 AATTACCAAAATACCCCTGTATGG-TAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGA-
*
36817853 AATACCCTTGTAGGGTAG
64 AATACCCTTGTAGGATAG
* * * **
36817871 AATTACCAGAATACCCCTATAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACTAAAA
1 AATTACCAAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAA
*
36817936 TACCCCTGTATGG-TAG
66 TACCCTTGTA-GGATAG
* *
36817952 AATTACCAAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTATCGCAA
1 AATTACCAAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAA
* *
36818017 TACCTTTGTAGGGTAG
66 TACCCTTGTAGGATAG
** * * *
36818033 AATTACCAAAATACCCCTGT-TGGGTAGAATTACCAGGATATCCCTATAGGGTAGAATTGCCGAA
1 AATTACCAAAATACCCCTGTAT-GGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA
* * *
36818097 ACACCCTTATAGGATAA
65 ATACCCTTGTAGGATAG
* * * * *
36818114 AATTACCAAAATACCCCTGTAGGGTAGAATTATCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 AATTACCAAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAA
*
36818179 TATCCC-TGTAGGGTAG
66 TA-CCCTTGTAGGATAG
*
36818195 AGTTACC
1 AATTACC
36818202 GAGAGACCCT
Statistics
Matches: 338, Mismatches: 60, Indels: 26
0.80 0.14 0.06
Matches are distributed among these distances:
79 4 0.01
80 62 0.18
81 264 0.78
82 8 0.02
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTATGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCTTGTAGGATAG
Found at i:36818465 original size:27 final size:26
Alignment explanation
Indices: 36818427--36818509 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
36818417 CGGAGGAAGC
*
36818427 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
36818454 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
36818480 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
36818507 GTT
1 GTT
36818510 GACCGATCGA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.20
27 41 0.80
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:36818842 original size:27 final size:27
Alignment explanation
Indices: 36818820--36818893 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
36818810 TAGGTGGGTT
*
36818820 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
* *
36818847 TGCCATAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
36818874 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
36818894 CAGCCATGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.12
27 34 0.85
28 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:36819020 original size:6 final size:6
Alignment explanation
Indices: 36819011--36819160 Score: 141
Period size: 6 Copynumber: 24.8 Consensus size: 6
36819001 TTGCATTCAC
* * *
36819011 ATTCTG ATTCTG ATTCTG -TTACTA ATACTG ATTCTG ATTCTG ATTCAG
1 ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
36819059 -TTACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
*
36819108 -TTACTA ATAT-TG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
36819156 ATTCT
1 ATTCT
36819161 CATTTTGGTT
Statistics
Matches: 119, Mismatches: 12, Indels: 26
0.76 0.08 0.17
Matches are distributed among these distances:
5 10 0.08
6 99 0.83
7 8 0.07
8 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:36819156 original size:24 final size:24
Alignment explanation
Indices: 36819014--36819160 Score: 170
Period size: 24 Copynumber: 5.8 Consensus size: 24
36819004 CATTCACATT
**
36819014 CTGATTCTGATTCTG-TTACTAATA
1 CTGATTCTGATTCTGATT-CTGTTA
*
36819038 CTGATTCTGATTCTGATTCAGTTA
1 CTGATTCTGATTCTGATTCTGTTA
*
36819062 CTGATTCTGATTCTGATTCTGTCA
1 CTGATTCTGATTCTGATTCTGTTA
*
36819086 CCTAATTCTGATTCTGATTCTGTTA
1 -CTGATTCTGATTCTGATTCTGTTA
36819111 CTAATATTGATTCTGATTCTGATTCTGTTA
1 C------TGATTCTGATTCTGATTCTGTTA
36819141 CTGATTCTGATTCTGATTCT
1 CTGATTCTGATTCTGATTCT
36819161 CATTTTGGTT
Statistics
Matches: 107, Mismatches: 8, Indels: 16
0.82 0.06 0.12
Matches are distributed among these distances:
24 60 0.56
25 24 0.22
30 23 0.21
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.48
Consensus pattern (24 bp):
CTGATTCTGATTCTGATTCTGTTA
Found at i:36820365 original size:40 final size:39
Alignment explanation
Indices: 36820321--36820500 Score: 234
Period size: 40 Copynumber: 4.5 Consensus size: 39
36820311 CCAACCCAAT
* * * * *
36820321 TGCCTTTGGGATTTAGCCCGAATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGAA-ATAACAACCAGCACGAA
* *
36820361 TGCCTTCGGGACTTAACCCGGAAATAGCGACCAGCACGAA
1 TGCCTTCGGGACTTAACCC-GAAATAACAACCAGCACGAA
* *
36820401 TGCCTTCGGGGCTTAACCCGAAAATAACAACCAGCATGAA
1 TGCCTTCGGGACTTAACCCG-AAATAACAACCAGCACGAA
*
36820441 TGCCTTCGGGACTTAACCCGTAAATAGCAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCG-AAATAACAACCAGCACGAA
36820481 TGCCTTCGGGACTTAACCCG
1 TGCCTTCGGGACTTAACCCG
36820501 GATATAATCC
Statistics
Matches: 123, Mismatches: 15, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 119 0.97
41 3 0.02
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.19
Consensus pattern (39 bp):
TGCCTTCGGGACTTAACCCGAAATAACAACCAGCACGAA
Found at i:36820454 original size:80 final size:80
Alignment explanation
Indices: 36820321--36820500 Score: 270
Period size: 80 Copynumber: 2.2 Consensus size: 80
36820311 CCAACCCAAT
* * * **
36820321 TGCCTTTGGGATTTAGCCCGAATGTAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAAT
1 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAAT
*
36820386 AGCGACCAGCACGAA
66 AGCAACCAGCACGAA
* ** *
36820401 TGCCTTCGGGGCTTAACCCGAAAATAACAACCAGCATGAATGCCTTCGGGACTTAACCCGTAAAT
1 TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAAT
36820466 AGCAACCAGCACGAA
66 AGCAACCAGCACGAA
36820481 TGCCTTCGGGACTTAACCCG
1 TGCCTTCGGGACTTAACCCG
36820501 GATATAATCC
Statistics
Matches: 89, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
80 89 1.00
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.19
Consensus pattern (80 bp):
TGCCTTCGGGACTTAACCCGAAAATAACAACCAGCACAAATGCCTTCGGGACTTAACCCGGAAAT
AGCAACCAGCACGAA
Found at i:36822655 original size:3 final size:3
Alignment explanation
Indices: 36822647--36822672 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36822637 TATGTAAGTA
36822647 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
36822673 TTTTAAGAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:36829952 original size:13 final size:13
Alignment explanation
Indices: 36829934--36829960 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36829924 GCTCGGTAGG
36829934 GACACGCCCGTGT
1 GACACGCCCGTGT
36829947 GACACGCCCGTGT
1 GACACGCCCGTGT
36829960 G
1 G
36829961 CGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:36830495 original size:20 final size:20
Alignment explanation
Indices: 36830470--36830508 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
36830460 CGTGACCACA
36830470 AGTCATTTGTCTTTGTGATG
1 AGTCATTTGTCTTTGTGATG
36830490 AGTCATTTGTCTTTGTGAT
1 AGTCATTTGTCTTTGTGAT
36830509 AAATGGCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.10, G:0.23, T:0.51
Consensus pattern (20 bp):
AGTCATTTGTCTTTGTGATG
Found at i:36836472 original size:46 final size:46
Alignment explanation
Indices: 36836370--36836590 Score: 175
Period size: 46 Copynumber: 4.7 Consensus size: 46
36836360 ACATTATGGG
* * *
36836370 AGCCAGTGTCAGACCATGTCTGGGACATGGCATCAGCATTGAGAC-A
1 AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCCTCGAGACGA
* *
36836416 AGGGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
1 A--GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGAGACG-A
* * *
36836464 AGCCAGTGTAAGACATGTCTAGGACAT-GCATCAG-CTACAAGATGA
1 AGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCT-CGAGACGA
* * * * *
36836509 TAGTCAGTGTAAGACCATGTCTGGGACATGGCAT-TGACTTGAGA-TA
1 -AGCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGCCTCGAGACGA
* *
36836555 TGAGCCAGTGTAAGACTGTGTCTAGGACATGGCATC
1 --AGCCAGTGTAAGAC-ATGTCTGGGACATGGCATC
36836591 GACACCTTAC
Statistics
Matches: 143, Mismatches: 20, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
45 3 0.02
46 63 0.44
47 59 0.41
48 18 0.13
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGAGACGA
Found at i:36836564 original size:47 final size:48
Alignment explanation
Indices: 36836369--36836589 Score: 181
Period size: 47 Copynumber: 4.7 Consensus size: 48
36836359 CACATTATGG
* * *
36836369 GAGCCAGTGTCAGACCATGTCTGGGACATGGCA-TCAGCATTGAGACAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTCAGC-TCGAGACAT
* * * *
36836417 GGGCTAGTGTAAGA-CATGTCTGGGACAT-GCA-TCGGCCTCGAGACGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTCAG-CTCGAGACAT
* * * *
36836463 AAGCCAGTGTAAGA-CATGTCTAGGACAT-GCA-TCAGCTACAAGATGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTCAGCT-CGAGA-CAT
* * * *
36836510 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATTGA-CTTGAGATAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTCAGCTCGAGACAT
** *
36836556 GAGCCAGTGTAAGACTGTGTCTAGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
36836590 CGACACCTTA
Statistics
Matches: 141, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
45 2 0.01
46 60 0.43
47 61 0.43
48 16 0.11
49 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATTCAGCTCGAGACAT
Found at i:36836577 original size:140 final size:141
Alignment explanation
Indices: 36836328--36836591 Score: 329
Period size: 140 Copynumber: 1.9 Consensus size: 141
36836318 TGTGTGAGCT
* ** * *
36836328 AGTGTAAGACATATCTGGGACATGCATCGATCACATTATGGGAGCCAGTGTCAGACCATGTCTGG
1 AGTGTAAGACATATCTAGGACATGCATCGATCACAAGATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
36836393 GACATGGCATCAGCATTGAGACAAGGGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
66 GACATGGCATCAGCATTGAGACAAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCG
36836457 AGACGTAAGCC
131 AGACGTAAGCC
* * * *
36836468 AGTGTAAGACATGTCTAGGACATGCATC-AGCTACAAGATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATATCTAGGACATGCATCGATC-ACAAGATGAGAGCCAGTGTAAGACCATGTCTG
* * * *
36836532 GGACATGGCAT-TG-ACTTGAGATATGAGCCAGTGTAAGACTGTGTCTAGGACATGGCATCG
65 GGACATGGCATCAGCA-TTGAGACAAGAGCCAGTGTAAGAC-ATGTCTAGGACATGGCATCG
36836592 ACACCTTACC
Statistics
Matches: 104, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
138 1 0.01
139 23 0.22
140 74 0.71
141 6 0.06
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATATCTAGGACATGCATCGATCACAAGATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGCATTGAGACAAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGGCCTCG
AGACGTAAGCC
Found at i:36842306 original size:10 final size:10
Alignment explanation
Indices: 36842291--36842317 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
36842281 GTACCCAAGA
36842291 CTTCTTCCAG
1 CTTCTTCCAG
36842301 CTTCTTCCAG
1 CTTCTTCCAG
36842311 CTTCTTC
1 CTTCTTC
36842318 TAAAATCTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.07, C:0.41, G:0.07, T:0.44
Consensus pattern (10 bp):
CTTCTTCCAG
Found at i:36861845 original size:20 final size:21
Alignment explanation
Indices: 36861820--36861861 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
36861810 AAGTTCCCAT
36861820 AAGG-ACTCGAGTTAAGTTAA
1 AAGGAACTCGAGTTAAGTTAA
*
36861840 AAGGACACTCGGGTTAAGTTAA
1 AAGGA-ACTCGAGTTAAGTTAA
36861862 GGGAGAGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 4 0.21
22 15 0.79
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (21 bp):
AAGGAACTCGAGTTAAGTTAA
Found at i:36862898 original size:61 final size:61
Alignment explanation
Indices: 36862816--36862979 Score: 197
Period size: 60 Copynumber: 2.7 Consensus size: 61
36862806 AAATTTCTGA
* * * * *
36862816 AGGAAAGCCTTTGTGGTGAGTACTGGTTATAAAGGATAGCTTTTGT-AGCACAACTTTGGAT
1 AGGAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGCTTTTGTGA-CACAACTCTAGAT
*
36862877 AGGAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGC-TTTGTGACATAACTCTAGAT
1 AGGAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGCTTTTGTGACACAACTCTAGAT
* * * * * *
36862937 AAGAAAGCCTTTTTGGCAAGCACTAGATATAAAGGATAACTTT
1 AGGAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGCTTT
36862980 GTGGAAAAAC
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
60 49 0.55
61 40 0.45
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.30
Consensus pattern (61 bp):
AGGAAAGCCTTTATGGCGAGTACTGGATATAAAGGATAGCTTTTGTGACACAACTCTAGAT
Found at i:36863310 original size:16 final size:16
Alignment explanation
Indices: 36863289--36863319 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36863279 TTTCACTTTA
*
36863289 TGTCTTTTGTATTTTT
1 TGTCTTTTATATTTTT
36863305 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
36863320 GTATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.06, G:0.10, T:0.74
Consensus pattern (16 bp):
TGTCTTTTATATTTTT
Found at i:36864727 original size:37 final size:36
Alignment explanation
Indices: 36864676--36864751 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 36
36864666 ATTCTAAAAA
*
36864676 TAATATTATTTTAATAGT-TTAATATTAAATTTAAT-T
1 TAATATTATCTTAATAGTATT-ATATT-AATTTAATAT
*
36864712 TAATACTTATCTTAATAGTATTTTATTAATTTAATAT
1 TAATA-TTATCTTAATAGTATTATATTAATTTAATAT
36864749 TAA
1 TAA
36864752 GATAATTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
36 13 0.37
37 20 0.57
38 2 0.06
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (36 bp):
TAATATTATCTTAATAGTATTATATTAATTTAATAT
Found at i:36870508 original size:50 final size:50
Alignment explanation
Indices: 36870454--36870554 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
36870444 ATTCTTAATA
36870454 ATTATCTCAAAACCAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
1 ATTATCTCAAAACCAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
36870504 ATTATCTCAAAACCAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
1 ATTATCTCAAAACCAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
36870554 A
1 A
36870555 GTCAACCTGG
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.43, C:0.12, G:0.08, T:0.38
Consensus pattern (50 bp):
ATTATCTCAAAACCAATTTTGTCTAAACAAGAAATTGAAATAATGTTTTT
Found at i:36885386 original size:19 final size:19
Alignment explanation
Indices: 36885362--36885407 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
36885352 TGTGGGTAGT
*
36885362 CCGTGTGGATTTCATACGC
1 CCGTGTGGATTTCACACGC
36885381 CCGTGTGGATTTCACACGC
1 CCGTGTGGATTTCACACGC
36885400 CCGTGTGG
1 CCGTGTGG
36885408 CTAGGACACG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.28, G:0.30, T:0.28
Consensus pattern (19 bp):
CCGTGTGGATTTCACACGC
Found at i:36889825 original size:42 final size:42
Alignment explanation
Indices: 36889762--36889845 Score: 132
Period size: 42 Copynumber: 2.0 Consensus size: 42
36889752 CAAATCGGTG
** *
36889762 TCGATGCCATGTCCCGGACATGGTCTTATACGGGACCTCATA
1 TCGATGCCATGTCCCAAACATGGTCTTACACGGGACCTCATA
*
36889804 TCGATGCCATGTCCCAAACATGGTCTTACACGGGATCTCATA
1 TCGATGCCATGTCCCAAACATGGTCTTACACGGGACCTCATA
36889846 AATCATGGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (42 bp):
TCGATGCCATGTCCCAAACATGGTCTTACACGGGACCTCATA
Found at i:36895484 original size:42 final size:41
Alignment explanation
Indices: 36895400--36895489 Score: 119
Period size: 42 Copynumber: 2.1 Consensus size: 41
36895390 AATCGGTGCT
* *
36895400 GATGCCATGTCCCAGACGTGGTCTTATACGGAACATCATATC
1 GATGCCATGTCCCAGACATGGTCTTATAC-GAAAATCATATC
*
36895442 GATGCCATGTCCTAGACATGGTCTTATAC-AAAATCACTTATC
1 GATGCCATGTCCCAGACATGGTCTTATACGAAAATCA--TATC
36895484 GATGCC
1 GATGCC
36895490 GAAGCCATAT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
40 6 0.14
42 37 0.86
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (41 bp):
GATGCCATGTCCCAGACATGGTCTTATACGAAAATCATATC
Found at i:36895497 original size:90 final size:90
Alignment explanation
Indices: 36895306--36895519 Score: 225
Period size: 90 Copynumber: 2.4 Consensus size: 90
36895296 CCAAATAGGG
* * * *
36895306 TGCCAAAGCCATGTCTCAGACATGGTCTTACATGGAACTACACATCGATGCCATATCCCAGATAT
1 TGCCGAAGCCATGTCCCAGACATGGTCTTACACGGAACTACACATCGATGCCATATCCCAGACAT
* * *
36895371 AGTCTTATACAAAGTCTCAAATCGG
66 AGTCTTATACAAAATCACAAATCGA
* * * * * * *
36895396 TGCTGATGCCATGTCCCAGACGTGGTCTTATACGGAAC-ATCATATCGATGCCATGTCCTAGACA
1 TGCCGAAGCCATGTCCCAGACATGGTCTTACACGGAACTA-CACATCGATGCCATATCCCAGACA
* **
36895460 TGGTCTTATACAAAATCACTTATCGA
65 TAGTCTTATACAAAATCACAAATCGA
* *
36895486 TGCCGAAGCCATATCCCTA-ATATGGTCTTACACG
1 TGCCGAAGCCATGTCCC-AGACATGGTCTTACACG
36895520 AGATCTCGTA
Statistics
Matches: 99, Mismatches: 23, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
89 1 0.01
90 97 0.98
91 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (90 bp):
TGCCGAAGCCATGTCCCAGACATGGTCTTACACGGAACTACACATCGATGCCATATCCCAGACAT
AGTCTTATACAAAATCACAAATCGA
Found at i:36900502 original size:16 final size:16
Alignment explanation
Indices: 36900481--36900512 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
36900471 AAATGTGTCC
36900481 ATATTATAGTAAACAT
1 ATATTATAGTAAACAT
36900497 ATATTATAGTAAACAT
1 ATATTATAGTAAACAT
36900513 GTAATTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (16 bp):
ATATTATAGTAAACAT
Found at i:36905568 original size:42 final size:43
Alignment explanation
Indices: 36905498--36905685 Score: 181
Period size: 42 Copynumber: 4.4 Consensus size: 43
36905488 CGTTCCGACG
* * * *
36905498 TGGTCTTACATGTTATTCA-ATATCGATGCCTCTGTCCCAGACA
1 TGGTCTTACACGTAAATCAGATAT-GATGCCTATGTCCCAGACA
*
36905541 GGGTCTTACACG-AAATCAGATATGATG-CTGATGTCCCAGACA
1 TGGTCTTACACGTAAATCAGATATGATGCCT-ATGTCCCAGACA
* *
36905583 TGGTCTTATACGTAAATCTCA-AT-TGAGGCCTATGTCCCAGACA
1 TGGTCTTACACGTAAA--TCAGATATGATGCCTATGTCCCAGACA
* * * * *
36905626 CGGTCTTACAC-AAAATCAGATACGATGCCGATGTCCCAGATA
1 TGGTCTTACACGTAAATCAGATATGATGCCTATGTCCCAGACA
*
36905668 TGGTCTTATACGTAAATC
1 TGGTCTTACACGTAAATC
36905686 TCAATCGAGG
Statistics
Matches: 118, Mismatches: 18, Indels: 18
0.77 0.12 0.12
Matches are distributed among these distances:
40 3 0.03
41 4 0.03
42 57 0.48
43 47 0.40
44 4 0.03
45 3 0.03
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (43 bp):
TGGTCTTACACGTAAATCAGATATGATGCCTATGTCCCAGACA
Found at i:36905642 original size:85 final size:85
Alignment explanation
Indices: 36905519--36905718 Score: 310
Period size: 85 Copynumber: 2.4 Consensus size: 85
36905509 GTTATTCAAT
* * * * * *
36905519 ATCGATGCCTCTGTCCCAGACAGGGTCTTACACGAAATCAGATATGATGCTGATGTCCCAGACAT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACACAAAATCAGATACGATGCCGATGTCCCAGACAT
36905584 GGTCTTATACGTAAATCTCA
66 GGTCTTATACGTAAATCTCA
* *
36905604 ATTGAGGCCTATGTCCCAGACACGGTCTTACACAAAATCAGATACGATGCCGATGTCCCAGATAT
1 ATCGAGGCCTATGTCCCAGACACGGTCTTACACAAAATCAGATACGATGCCGATGTCCCAGACAT
36905669 GGTCTTATACGTAAATCTCA
66 GGTCTTATACGTAAATCTCA
* *
36905689 ATCGAGGCCTGTGTCCCAAACACGGTCTTA
1 ATCGAGGCCTATGTCCCAGACACGGTCTTA
36905719 TACGATGTCT
Statistics
Matches: 104, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
85 104 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (85 bp):
ATCGAGGCCTATGTCCCAGACACGGTCTTACACAAAATCAGATACGATGCCGATGTCCCAGACAT
GGTCTTATACGTAAATCTCA
Found at i:36905719 original size:43 final size:43
Alignment explanation
Indices: 36905519--36905722 Score: 170
Period size: 43 Copynumber: 4.8 Consensus size: 43
36905509 GTTATTCAAT
* * * * **
36905519 ATCGATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATCAGA
1 ATCGAGGCCTGTGTCCCAGACACGGTCTTATACGTAAATCTCA
* *
36905561 TAT-GATG-CTGATGTCCCAGACATGGTCTTATACGTAAATCTCA
1 -ATCGAGGCCTG-TGTCCCAGACACGGTCTTATACGTAAATCTCA
* * * *
36905604 ATTGAGGCCTATGTCCCAGACACGGTCTTACAC--AAA-ATCA
1 ATCGAGGCCTGTGTCCCAGACACGGTCTTATACGTAAATCTCA
* * *
36905644 GATACGATGCC-GATGTCCCAGATATGGTCTTATACGTAAATCTCA
1 -AT-CGAGGCCTG-TGTCCCAGACACGGTCTTATACGTAAATCTCA
*
36905689 ATCGAGGCCTGTGTCCCAAACACGGTCTTATACG
1 ATCGAGGCCTGTGTCCCAGACACGGTCTTATACG
36905723 ATGTCTCAGA
Statistics
Matches: 129, Mismatches: 21, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
40 3 0.02
41 7 0.05
42 51 0.40
43 57 0.44
44 8 0.06
45 3 0.02
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.26
Consensus pattern (43 bp):
ATCGAGGCCTGTGTCCCAGACACGGTCTTATACGTAAATCTCA
Found at i:36912427 original size:20 final size:20
Alignment explanation
Indices: 36912402--36912469 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
36912392 TCAAAACTTA
36912402 TATACATAGACCTTCTAGCC
1 TATACATAGACCTTCTAGCC
* * * *
36912422 TATACAT-G-CCATCAAAACTTA
1 TATACATAGACCTTC-TAGC--C
36912443 TATACATAGACCTTCTAGCC
1 TATACATAGACCTTCTAGCC
36912463 TATACAT
1 TATACAT
36912470 GCCATACTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
18 4 0.11
19 3 0.09
20 14 0.40
21 7 0.20
22 3 0.09
23 4 0.11
ACGTcount: A:0.35, C:0.26, G:0.07, T:0.31
Consensus pattern (20 bp):
TATACATAGACCTTCTAGCC
Found at i:36912438 original size:41 final size:41
Alignment explanation
Indices: 36912390--36912474 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
36912380 AATATATACA
36912390 CATCAAAACTTATATACATAGACCTTCTAGCCTATACATGC
1 CATCAAAACTTATATACATAGACCTTCTAGCCTATACATGC
36912431 CATCAAAACTTATATACATAGACCTTCTAGCCTATACATGC
1 CATCAAAACTTATATACATAGACCTTCTAGCCTATACATGC
36912472 CAT
1 CAT
36912475 ACTTTAAAAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.29
Consensus pattern (41 bp):
CATCAAAACTTATATACATAGACCTTCTAGCCTATACATGC
Found at i:36912977 original size:43 final size:43
Alignment explanation
Indices: 36912928--36913148 Score: 189
Period size: 43 Copynumber: 5.2 Consensus size: 43
36912918 CCCTGACGTA
* * * *
36912928 GTCTTACATGTAATTCA-ATATCGATGCCTCTGTCCCAGACAGG
1 GTCTTACACGTAAATCAGATA-CGATGCCTATGTCCCAGACACG
* *
36912971 GTCTTACACG-AAATCAGATACGATGCCGATGTCCCAGACATG
1 GTCTTACACGTAAATCAGATACGATGCCTATGTCCCAGACACG
* * ** * * *
36913013 GTCATAAACGTAAATCTCAAACGAGGCCTGTGTCCCAGACACG
1 GTCTTACACGTAAATCAGATACGATGCCTATGTCCCAGACACG
* * * *
36913056 GTCTTACATG-AAATCAGATACGATGTCGATGTCCCAGACATG
1 GTCTTACACGTAAATCAGATACGATGCCTATGTCCCAGACACG
* * * * * *
36913098 GTTTTATACGTAAATCACA-ATCGAGGCCTGTTTCCCAGACACG
1 GTCTTACACGTAAATCAGATA-CGATGCCTATGTCCCAGACACG
36913141 GTCTTACA
1 GTCTTACA
36913149 TGATGTCTCA
Statistics
Matches: 137, Mismatches: 37, Indels: 8
0.75 0.20 0.04
Matches are distributed among these distances:
42 64 0.47
43 73 0.53
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.25
Consensus pattern (43 bp):
GTCTTACACGTAAATCAGATACGATGCCTATGTCCCAGACACG
Found at i:36913070 original size:85 final size:85
Alignment explanation
Indices: 36912953--36913151 Score: 308
Period size: 85 Copynumber: 2.3 Consensus size: 85
36912943 CAATATCGAT
* * *
36912953 GCCTCTGTCCCAGACAGGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCAT
1 GCCTGTGTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGACATGGTCAT
*
36913018 AAACGTAAATCTCAAACGAG
66 AAACGTAAATCACAAACGAG
* **
36913038 GCCTGTGTCCCAGACACGGTCTTACATGAAATCAGATACGATGTCGATGTCCCAGACATGGTTTT
1 GCCTGTGTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGACATGGTCAT
* *
36913103 ATACGTAAATCACAATCGAG
66 AAACGTAAATCACAAACGAG
*
36913123 GCCTGTTTCCCAGACACGGTCTTACATGA
1 GCCTGTGTCCCAGACACGGTCTTACATGA
36913152 TGTCTCAGAC
Statistics
Matches: 104, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
85 104 1.00
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (85 bp):
GCCTGTGTCCCAGACACGGTCTTACATGAAATCAGATACGATGCCGATGTCCCAGACATGGTCAT
AAACGTAAATCACAAACGAG
Found at i:36921888 original size:55 final size:55
Alignment explanation
Indices: 36921786--36921923 Score: 145
Period size: 55 Copynumber: 2.5 Consensus size: 55
36921776 CATAGTTGAA
* * * * *
36921786 CACACGGGCGTGTGCCATGGCCGTGTTTTAAAGTCAGTGTTATACATGGGCAAGT
1 CACACGGACATGTGCCATGGCCGTGTTTAAAAGACAGTATTATACATGGGCAAGT
* * * *
36921841 CACACGGACATGTGCTATGGTCGTGTTTAAAAGACAGTATTGA-ACATGGG-TAGAC
1 CACACGGACATGTGCCATGGCCGTGTTTAAAAGACAGTATT-ATACATGGGCAAG-T
* *
36921896 CACACGGGCATGTGCCATGGCCATGTTT
1 CACACGGACATGTGCCATGGCCGTGTTT
36921924 TAAATCCAGT
Statistics
Matches: 68, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
54 2 0.03
55 65 0.96
56 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (55 bp):
CACACGGACATGTGCCATGGCCGTGTTTAAAAGACAGTATTATACATGGGCAAGT
Found at i:36923626 original size:22 final size:21
Alignment explanation
Indices: 36923601--36923642 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
36923591 GTCAAGAAGG
36923601 CCACACGGGCGTGTCGCCCCTT
1 CCACACGGGCGTGT-GCCCCTT
* *
36923623 CCACATGGGTGTGTGCCCCT
1 CCACACGGGCGTGTGCCCCT
36923643 ATTTCAAGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.10, C:0.40, G:0.29, T:0.21
Consensus pattern (21 bp):
CCACACGGGCGTGTGCCCCTT
Found at i:36925584 original size:17 final size:16
Alignment explanation
Indices: 36925562--36925621 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 16
36925552 ATTTCCATAG
36925562 TTTAATATTAAATTAAA
1 TTTAATATTAAATT-AA
*
36925579 TTTAATATTAAAGTGGTTA
1 TTTAATATTAAA-T--TAA
36925598 TCTTAATATTAAATTTAA
1 T-TTAATATTAAA-TTAA
36925616 TTTAAT
1 TTTAAT
36925622 GTTTATCTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
17 17 0.47
18 4 0.11
19 2 0.06
20 13 0.36
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (16 bp):
TTTAATATTAAATTAA
Found at i:36927635 original size:27 final size:26
Alignment explanation
Indices: 36927587--36927646 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
36927577 GCAAGGCTGC
* *
36927587 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCA-AAA
* * *
36927614 CAGATATTGTGGCTAGGCCACCAAAA
1 CAGATATTGTGACAAAGCCACCAAAA
36927640 CAGATAT
1 CAGATAT
36927647 ATATGTGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.32
27 19 0.68
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAAAA
Found at i:36928358 original size:26 final size:27
Alignment explanation
Indices: 36928329--36928382 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
36928319 TCACACAAGT
*
36928329 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
36928355 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
36928382 T
1 T
36928383 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:36928487 original size:81 final size:81
Alignment explanation
Indices: 36928383--36928555 Score: 220
Period size: 81 Copynumber: 2.1 Consensus size: 81
36928373 GGGGCAAAAT
* ** ** * * *
36928383 GGTAATTTTACCCCGCAAGGGTATCTCGGTAATTGTACCCTGTAGGGGTATTTCGGTATTTCTAC
1 GGTAATTCTACCCAACAAGGGTATCTCAATAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
36928448 CCTACAAGGGTATTTC
66 CCTACAAGGGTATTTC
* *
36928464 GGTAATTCTACCCAACAGGGGTATTTCAATAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCAACAAGGGTATCTCAATAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
** *
36928529 TTTACAGGGGTATTTC
66 CCTACAAGGGTATTTC
*
36928545 GATAATTCTAC
1 GGTAATTCTAC
36928556 AACTTATCCA
Statistics
Matches: 78, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 78 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (81 bp):
GGTAATTCTACCCAACAAGGGTATCTCAATAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
CCTACAAGGGTATTTC
Found at i:36928552 original size:27 final size:27
Alignment explanation
Indices: 36928383--36928555 Score: 193
Period size: 27 Copynumber: 6.4 Consensus size: 27
36928373 GGGGCAAAAT
* ** * *
36928383 GGTAATTTTACCCCGCAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* **
36928410 GGTAATTGTACCCTGTAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
36928437 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36928464 GGTAATTCTACCCAACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
36928491 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
36928518 GGTAATTCTACTTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
36928545 GATAATTCTAC
1 GGTAATTCTAC
36928556 AACTTATCCA
Statistics
Matches: 123, Mismatches: 23, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:36932700 original size:43 final size:43
Alignment explanation
Indices: 36932652--36932862 Score: 166
Period size: 43 Copynumber: 4.9 Consensus size: 43
36932642 CATCGAGACG
*
36932652 AGATTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTA
1 AGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
**
36932695 AGATTATGTGTAAGACCATGTCTGGGACATTGGCATCAT-TA-TA
1 AGATTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTATTA
* * *** *
36932738 CGATTACGTGTAAGACCATGTCTAAAACATTGGCATCG--TTA
1 AGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
* * * * *
36932779 ATCGATTACATGTAAGACCCTTTCTAGGACAGTGGCATCGATATGT-
1 A--GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-TAT-TA
* * *
36932825 -GATAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 AGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
36932863 CGAGCTTATT
Statistics
Matches: 136, Mismatches: 22, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
41 4 0.03
42 7 0.05
43 120 0.88
44 2 0.01
45 1 0.01
46 1 0.01
47 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (43 bp):
AGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTA
Found at i:36939289 original size:25 final size:23
Alignment explanation
Indices: 36939244--36939301 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
36939234 ACTTTAACCA
* *
36939244 TTTTTATTTTTATTGCAATTTAATT
1 TTTTTATTTTAATTACAATTT--TT
*
36939269 TTTTTATTTTAATTACTATTTTT
1 TTTTTATTTTAATTACAATTTTT
36939292 TCTTTTATTT
1 T-TTTTATTT
36939302 GCTTTCGGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 3 0.10
24 8 0.28
25 18 0.62
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (23 bp):
TTTTTATTTTAATTACAATTTTT
Found at i:36951570 original size:51 final size:51
Alignment explanation
Indices: 36951515--36951614 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
36951505 CTACGTTATG
* *
36951515 ACATGT-TACACATCCATAATGAACTCGGACCAATCAACGAGCTCTGATGTT
1 ACATGTAT-CACATCCATAATGAACTCAGACCAATCAACGAGCTCGGATGTT
* * *
36951566 ACATGTATCGCATCCATTATGAACTCAGACCACTCAACGAGCTCGGATG
1 ACATGTATCACATCCATAATGAACTCAGACCAATCAACGAGCTCGGATG
36951615 CCACATATAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
51 42 0.98
52 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (51 bp):
ACATGTATCACATCCATAATGAACTCAGACCAATCAACGAGCTCGGATGTT
Found at i:36951645 original size:42 final size:43
Alignment explanation
Indices: 36951586--36951698 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 43
36951576 CATCCATTAT
*
36951586 GAACTCAGACCACTCAACGAGCTCGGATGC-CACATATATCAC
1 GAACTCGGACCACTCAACGAGCTCGGATGCTCACATATATCAC
* * * * *
36951628 GAACTTGGACCACTCAACAAGTTCGTATTCTCACATATATCAC
1 GAACTCGGACCACTCAACGAGCTCGGATGCTCACATATATCAC
* *
36951671 GAACTCGAACCGCTCAACGAGCTCGGAT
1 GAACTCGGACCACTCAACGAGCTCGGAT
36951699 TTCTTAATTC
Statistics
Matches: 58, Mismatches: 12, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
42 24 0.41
43 34 0.59
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.20
Consensus pattern (43 bp):
GAACTCGGACCACTCAACGAGCTCGGATGCTCACATATATCAC
Found at i:36955696 original size:57 final size:57
Alignment explanation
Indices: 36955628--36955736 Score: 173
Period size: 57 Copynumber: 1.9 Consensus size: 57
36955618 CATTTTAACA
** *
36955628 AACATAAATATGTGCATTAAGAGACATTATGACAGCACCTATAAATTACATTTGGCC
1 AACATAAATATGCACATTAAGAGACATTATGACAGCAACTATAAATTACATTTGGCC
* *
36955685 AACATAAATATGCACATTAAGAGATATTTTGACAGCAACTATAAATTACATT
1 AACATAAATATGCACATTAAGAGACATTATGACAGCAACTATAAATTACATT
36955737 AAGACCGTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 47 1.00
ACGTcount: A:0.43, C:0.16, G:0.12, T:0.29
Consensus pattern (57 bp):
AACATAAATATGCACATTAAGAGACATTATGACAGCAACTATAAATTACATTTGGCC
Found at i:36957256 original size:16 final size:18
Alignment explanation
Indices: 36957223--36957258 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
36957213 AAAAATGTAA
36957223 TTAATTTAAAATTTTTAT
1 TTAATTTAAAATTTTTAT
36957241 TTAA-TTAAAA-TTTTAT
1 TTAATTTAAAATTTTTAT
36957257 TT
1 TT
36957259 TAATCTCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
17 6 0.33
18 4 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTAATTTAAAATTTTTAT
Found at i:36957421 original size:19 final size:19
Alignment explanation
Indices: 36957399--36957437 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
36957389 AGCTGAACTA
36957399 AAAAAACCACTATTTTTGT
1 AAAAAACCACTATTTTTGT
36957418 AAAAAACCACTATTTTTGT
1 AAAAAACCACTATTTTTGT
36957437 A
1 A
36957438 GTGTATCCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (19 bp):
AAAAAACCACTATTTTTGT
Found at i:36959152 original size:2 final size:2
Alignment explanation
Indices: 36959145--36959177 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
36959135 CTGCTGCTGC
36959145 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
36959178 CCTGCCTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:36962023 original size:11 final size:11
Alignment explanation
Indices: 36962007--36962031 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36961997 AATTGTTAAA
36962007 AAAAAAAAAAC
1 AAAAAAAAAAC
36962018 AAAAAAAAAAC
1 AAAAAAAAAAC
36962029 AAA
1 AAA
36962032 GCGTCTACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:36962362 original size:11 final size:11
Alignment explanation
Indices: 36962346--36962370 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36962336 TCAGTAGGCA
36962346 CATCACTAAAC
1 CATCACTAAAC
36962357 CATCACTAAAC
1 CATCACTAAAC
36962368 CAT
1 CAT
36962371 TATTTGGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.36, G:0.00, T:0.20
Consensus pattern (11 bp):
CATCACTAAAC
Found at i:36964948 original size:58 final size:59
Alignment explanation
Indices: 36964865--36965019 Score: 192
Period size: 59 Copynumber: 2.6 Consensus size: 59
36964855 TATTATGATC
* *
36964865 TTTATT-AATTCATATTTTAAAAATAATTATATTAAGAATGTTATTAAATTATAT-ATTA-T
1 TTTATTAAATT-ATA-TTTAATAATAATTATATTAA-AATATTATTAAATTATATCATTATT
* * *
36964924 TTTATTAAATTGTATTTAATAATAATTATGTTAAAATATTATTTAATTATATCATTATT
1 TTTATTAAATTATATTTAATAATAATTATATTAAAATATTATTAAATTATATCATTATT
*
36964983 TTTATTAAATTATATTTAGTAATAATCTA-ATTAAAAT
1 TTTATTAAATTATATTTAATAATAAT-TATATTAAAAT
36965020 TTAATAACAA
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
57 16 0.19
58 22 0.26
59 40 0.48
60 6 0.07
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (59 bp):
TTTATTAAATTATATTTAATAATAATTATATTAAAATATTATTAAATTATATCATTATT
Found at i:36964966 original size:27 final size:26
Alignment explanation
Indices: 36964880--36965022 Score: 81
Period size: 29 Copynumber: 5.0 Consensus size: 26
36964870 TAATTCATAT
*
36964880 TTTAAAAATAATTATATTAAGAATGTTA
1 TTTAATAATAATTATATTAA-AAT-TTA
* * *
36964908 TTAAATTATATATTATTTTATTAAATTGTA
1 TTTAATAATA-ATTATATTA--AAATT-TA
*
36964938 TTTAATAATAATTATGTTAAAATATTA
1 TTTAATAATAATTATATTAAAAT-TTA
* *
36964965 TTTAATTATATCATTATTTTTATTAAATTATA
1 TTTAA-TA-ATAATTA-TATTA--AAATT-TA
*
36964997 TTTAGTAATAATCTA-ATTAAAATTTA
1 TTTAATAATAAT-TATATTAAAATTTA
36965023 ATAACAATAA
Statistics
Matches: 91, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
26 2 0.02
27 16 0.18
28 10 0.11
29 26 0.29
30 21 0.23
31 6 0.07
32 10 0.11
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.51
Consensus pattern (26 bp):
TTTAATAATAATTATATTAAAATTTA
Found at i:36965227 original size:32 final size:32
Alignment explanation
Indices: 36965181--36965247 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
36965171 TGAATTATTA
* * *
36965181 ATTACAGCTTTATTCTATTACAGTCATATTTT
1 ATTACAGCTCTATTCCATTACAATCATATTTT
* *
36965213 ATTACATCTCTATTCCATTACAATCTTATTTT
1 ATTACAGCTCTATTCCATTACAATCATATTTT
36965245 ATT
1 ATT
36965248 CACCCCAACC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.28, C:0.18, G:0.03, T:0.51
Consensus pattern (32 bp):
ATTACAGCTCTATTCCATTACAATCATATTTT
Found at i:36965242 original size:16 final size:16
Alignment explanation
Indices: 36965190--36965247 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
36965180 AATTACAGCT
*
36965190 TTATTCTATTACAGTC
1 TTATTCTATTACAATC
* *
36965206 ATATTTTATTAC-ATC
1 TTATTCTATTACAATC
*
36965221 TCTATTCCATTACAATC
1 T-TATTCTATTACAATC
*
36965238 TTATTTTATT
1 TTATTCTATT
36965248 CACCCCAACC
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
15 2 0.06
16 26 0.81
17 4 0.12
ACGTcount: A:0.28, C:0.17, G:0.02, T:0.53
Consensus pattern (16 bp):
TTATTCTATTACAATC
Found at i:36965868 original size:57 final size:53
Alignment explanation
Indices: 36965767--36965873 Score: 144
Period size: 57 Copynumber: 1.9 Consensus size: 53
36965757 ATTGTTATTA
*
36965767 AATTATTATTAAATATAATATAATAATAAATAATTTAATCATATT-TTAACAT
1 AATTATTATTAAATATAATATAATAATAAATAATTTAATAATATTCTTAACAT
*
36965819 AATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAATATTCTTAA
1 AATTATTATTAAATATAA--T-AT--AATAATAAATAATTTAATAATATTCTTAA
36965874 TCCAATTGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
52 18 0.38
54 1 0.02
55 2 0.04
57 22 0.47
58 4 0.09
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (53 bp):
AATTATTATTAAATATAATATAATAATAAATAATTTAATAATATTCTTAACAT
Found at i:36970982 original size:22 final size:22
Alignment explanation
Indices: 36970941--36970999 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
36970931 GTTTTAAGAA
* *
36970941 TTGTTTTAGTA-TCATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
36970962 TTGTTTTAATATTTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
36970984 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
36971000 GATTTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 7 0.21
21 16 0.48
22 10 0.30
ACGTcount: A:0.24, C:0.02, G:0.07, T:0.68
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:36970998 original size:20 final size:22
Alignment explanation
Indices: 36970954--36970999 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
36970944 TTTTAGTATC
* *
36970954 ATTTTTATTTGTTTTAATATTT
1 ATTTTTATGTGTTTTAATATAT
36970976 ATTTTTATGT-TTTTAA-ATAT
1 ATTTTTATGTGTTTTAATATAT
36970996 ATTT
1 ATTT
36971000 GATTTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 7 0.32
21 6 0.27
22 9 0.41
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (22 bp):
ATTTTTATGTGTTTTAATATAT
Found at i:36971029 original size:25 final size:26
Alignment explanation
Indices: 36970973--36971030 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
36970963 TGTTTTAATA
36970973 TTTATTT-TTATGTTTTTAAATATAT
1 TTTATTTATTATGTTTTTAAATATAT
* *
36970998 TTGATTTATTATATTTTTTAAAT-T-T
1 TTTATTTATTAT-GTTTTTAAATATAT
36971023 TTTATTTA
1 TTTATTTA
36971031 ATGAAATAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
25 14 0.50
26 5 0.18
27 9 0.32
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (26 bp):
TTTATTTATTATGTTTTTAAATATAT
Found at i:36971556 original size:29 final size:31
Alignment explanation
Indices: 36971508--36971571 Score: 80
Period size: 29 Copynumber: 2.1 Consensus size: 31
36971498 TTTATAATTA
*
36971508 TTTAATTAGATAATTATTATT-TATTTAATAT
1 TTTAATAAGATAATTATTATTAT-TTTAATAT
*
36971539 TTTAATAAGAT-ATT-TTATTATTTTATTAT
1 TTTAATAAGATAATTATTATTATTTTAATAT
36971568 TTTA
1 TTTA
36971572 TTTAATCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 16 0.53
30 4 0.13
31 10 0.33
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
TTTAATAAGATAATTATTATTATTTTAATAT
Found at i:36971560 original size:8 final size:8
Alignment explanation
Indices: 36971549--36971573 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
36971539 TTTAATAAGA
36971549 TATTTTAT
1 TATTTTAT
36971557 TATTTTAT
1 TATTTTAT
36971565 TATTTTAT
1 TATTTTAT
36971573 T
1 T
36971574 TAATCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:36974668 original size:45 final size:45
Alignment explanation
Indices: 36974604--36974836 Score: 367
Period size: 45 Copynumber: 5.2 Consensus size: 45
36974594 TTGTTACCGC
* *
36974604 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
36974649 TACTGTTATCGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
*
36974694 TATTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
36974739 TATTGTTACCGTCACCGATTCAGCACTTTGTGTGTCGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* * *
36974784 TACTATTACCGTTACCGATTCAGCACTTTGTGTGTTGAATATTGT
1 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
36974829 TACTGTTA
1 TACTGTTA
36974837 GTATTACTGT
Statistics
Matches: 174, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 174 1.00
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (45 bp):
TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:36974849 original size:6 final size:6
Alignment explanation
Indices: 36974826--36974890 Score: 60
Period size: 6 Copynumber: 10.7 Consensus size: 6
36974816 TGTTGAATAT
* * *
36974826 TGTTAC TGTTAG TATTAC TGTTAC TGCTAC TGTTAC TGATTAC TGTT-C
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TGTTAC TG-TTAC TGTTAC
* *
36974874 TGGTAC TATGTAC TGTT
1 TGTTAC TGT-TAC TGTT
36974891 TTAGGCACAA
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
5 4 0.09
6 31 0.67
7 11 0.24
ACGTcount: A:0.18, C:0.15, G:0.18, T:0.48
Consensus pattern (6 bp):
TGTTAC
Found at i:36974887 original size:25 final size:25
Alignment explanation
Indices: 36974839--36974888 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
36974829 TACTGTTAGT
*
36974839 ATTACTGTTACTGCTACTGTTACTG
1 ATTACTGTTACTGCTACTATTACTG
*
36974864 ATTACTGTT-CTGGTACTATGTACTG
1 ATTACTGTTACTGCTACTAT-TACTG
36974889 TTTTAGGCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.20, C:0.18, G:0.18, T:0.44
Consensus pattern (25 bp):
ATTACTGTTACTGCTACTATTACTG
Found at i:36975709 original size:19 final size:19
Alignment explanation
Indices: 36975685--36975722 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
36975675 AAAGAAAGAA
36975685 AAGATATAAACATACAGGT
1 AAGATATAAACATACAGGT
36975704 AAGATATAAACATACAGGT
1 AAGATATAAACATACAGGT
36975723 TATTAGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.16, T:0.21
Consensus pattern (19 bp):
AAGATATAAACATACAGGT
Found at i:36976717 original size:8 final size:8
Alignment explanation
Indices: 36976694--36976718 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
36976684 TTTAATATGA
36976694 TATTTTAT
1 TATTTTAT
36976702 TATTTTAT
1 TATTTTAT
36976710 TATTTTAT
1 TATTTTAT
36976718 T
1 T
36976719 TAGTCTATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:36976718 original size:21 final size:21
Alignment explanation
Indices: 36976666--36976719 Score: 58
Period size: 21 Copynumber: 2.7 Consensus size: 21
36976656 AATTAGATAA
36976666 TTATTA-TTTA-TTTAATATT
1 TTATTATTTTATTTTAATATT
* ** *
36976685 TTAATATGATATTTTATTATT
1 TTATTATTTTATTTTAATATT
36976706 TTATTATTTTATTT
1 TTATTATTTTATTT
36976720 AGTCTATATA
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
19 5 0.19
20 2 0.08
21 19 0.73
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.69
Consensus pattern (21 bp):
TTATTATTTTATTTTAATATT
Found at i:36978825 original size:5 final size:5
Alignment explanation
Indices: 36978815--36978849 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
36978805 TCTAAAACTC
36978815 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
36978850 TTTAATATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:36982722 original size:18 final size:18
Alignment explanation
Indices: 36982701--36982739 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
36982691 GTAAAATATT
36982701 AAATAATATTAAATAATA
1 AAATAATATTAAATAATA
* **
36982719 AAATATTATTATTTAATA
1 AAATAATATTAAATAATA
36982737 AAA
1 AAA
36982740 ATATTATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATAATATTAAATAATA
Found at i:36992212 original size:17 final size:17
Alignment explanation
Indices: 36992190--36992223 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
36992180 AGATTGTTTT
36992190 AAAGAACGTGCTTTATG
1 AAAGAACGTGCTTTATG
*
36992207 AAAGAACGTGTTTTATG
1 AAAGAACGTGCTTTATG
36992224 TACCTCATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.35, C:0.09, G:0.24, T:0.32
Consensus pattern (17 bp):
AAAGAACGTGCTTTATG
Found at i:36995106 original size:51 final size:48
Alignment explanation
Indices: 36995004--36995106 Score: 116
Period size: 48 Copynumber: 2.1 Consensus size: 48
36994994 TCCCCAAAAA
* * * *
36995004 TAATATTATTTTAATAGTTTAATATTAAATTAAATTTAATATTTACCT
1 TAATATTATTTTAATAATTTAATATTAAATGAAATTTAATATTAAACT
* * *
36995052 TAATATTATTTTATTAATTTAATATTAAAGTGATTATCTTAATATTAAATT
1 TAATATTATTTTAATAATTTAATATTAAA-TGA-AAT-TTAATATTAAACT
36995103 TAAT
1 TAAT
36995107 TTAATGGTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
48 27 0.60
49 2 0.04
50 2 0.04
51 14 0.31
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (48 bp):
TAATATTATTTTAATAATTTAATATTAAATGAAATTTAATATTAAACT
Found at i:36995354 original size:25 final size:26
Alignment explanation
Indices: 36995312--36995362 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
36995302 AATTGTAAAG
*
36995312 AGAAAGTTCTCTAAAGATATTATTCT
1 AGAAAATTCTCTAAAGATATTATTCT
* *
36995338 AGAAAATT-TCTACAGATATTTTTCT
1 AGAAAATTCTCTAAAGATATTATTCT
36995363 GATTTACAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (26 bp):
AGAAAATTCTCTAAAGATATTATTCT
Found at i:37000912 original size:19 final size:19
Alignment explanation
Indices: 37000885--37000921 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
37000875 CCGTGTGTCT
*
37000885 CACATGGCCTTGGACACGA
1 CACACGGCCTTGGACACGA
37000904 CACACGGCCTTGGACACG
1 CACACGGCCTTGGACACG
37000922 CTCGTGTGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.35, G:0.27, T:0.14
Consensus pattern (19 bp):
CACACGGCCTTGGACACGA
Found at i:37001549 original size:58 final size:58
Alignment explanation
Indices: 37001371--37001561 Score: 169
Period size: 58 Copynumber: 3.3 Consensus size: 58
37001361 ATTTCAAATC
*
37001371 TCAATTCATCAATCAATTTATACCAAAACTTCAACTAAAATCATACCTAAACATATGA
1 TCAATACATCAATCAATTTATACCAAAACTTCAACTAAAATCATACCTAAACATATGA
* ** * * * * * *
37001429 TCAATACATCATTCAATCAAATGCTCAAAACTT--ACCAAAA-C-T-TCTCAAGTTTCAAAT-C
1 TCAATACATCAATCAAT-TTATAC-CAAAACTTCAACTAAAATCATACCT-AA---ACATATGA
* *
37001487 TCAATTCATCAATCAATTTATACAAAAACTTCAACTAAAATCATACCTAAACATATGA
1 TCAATACATCAATCAATTTATACCAAAACTTCAACTAAAATCATACCTAAACATATGA
*
37001545 TCAATACATCATTCAAT
1 TCAATACATCAATCAAT
37001562 CAAATGCTCA
Statistics
Matches: 98, Mismatches: 23, Indels: 24
0.68 0.16 0.17
Matches are distributed among these distances:
55 2 0.02
56 10 0.10
57 8 0.08
58 57 0.58
59 8 0.08
60 11 0.11
61 2 0.02
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.30
Consensus pattern (58 bp):
TCAATACATCAATCAATTTATACCAAAACTTCAACTAAAATCATACCTAAACATATGA
Found at i:37001566 original size:116 final size:116
Alignment explanation
Indices: 37001362--37001592 Score: 444
Period size: 116 Copynumber: 2.0 Consensus size: 116
37001352 TTACCAATCA
*
37001362 TTTCAAATCTCAATTCATCAATCAATTTATACCAAAACTTCAACTAAAATCATACCTAAACATAT
1 TTTCAAATCTCAATTCATCAATCAATTTATACAAAAACTTCAACTAAAATCATACCTAAACATAT
*
37001427 GATCAATACATCATTCAATCAAATGCTCAAAACTTACCAAAACTTCTCAAG
66 GATCAATACATCATTCAATCAAATGCTCAAAACTTACCAAAAATTCTCAAG
37001478 TTTCAAATCTCAATTCATCAATCAATTTATACAAAAACTTCAACTAAAATCATACCTAAACATAT
1 TTTCAAATCTCAATTCATCAATCAATTTATACAAAAACTTCAACTAAAATCATACCTAAACATAT
37001543 GATCAATACATCATTCAATCAAATGCTCAAAACTTACCAAAAATTCTCAA
66 GATCAATACATCATTCAATCAAATGCTCAAAACTTACCAAAAATTCTCAA
37001593 CGTTGACCAT
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 113 1.00
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.29
Consensus pattern (116 bp):
TTTCAAATCTCAATTCATCAATCAATTTATACAAAAACTTCAACTAAAATCATACCTAAACATAT
GATCAATACATCATTCAATCAAATGCTCAAAACTTACCAAAAATTCTCAAG
Found at i:37010300 original size:43 final size:42
Alignment explanation
Indices: 37010241--37010350 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
37010231 CAGTGCCAAG
37010241 GTCCCAGAC-GTGGTCTTACATGTAATCAAATATCGATGC-CACT
1 GTCCCAGACAG-GGTCTTACATGTAATCAAATA-CGATGCTCA-T
** * * * *
37010284 GTCGTAGACAGGGTCTTACACGAAATCAGATACGATGCTGAT
1 GTCCCAGACAGGGTCTTACATGTAATCAAATACGATGCTCAT
*
37010326 GTCCCAGACATGGTCTTACATGTAA
1 GTCCCAGACAGGGTCTTACATGTAA
37010351 AATAGAAGTC
Statistics
Matches: 54, Mismatches: 11, Indels: 5
0.77 0.16 0.07
Matches are distributed among these distances:
42 27 0.50
43 26 0.48
44 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACATGTAATCAAATACGATGCTCAT
Found at i:37010335 original size:42 final size:43
Alignment explanation
Indices: 37010241--37010345 Score: 108
Period size: 43 Copynumber: 2.5 Consensus size: 43
37010231 CAGTGCCAAG
* *
37010241 GTCCCAGAC-GTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACAG-GGTCTTACACGAAATCAAATATCGATGCCACT
** * *
37010284 GTCGTAGACAGGGTCTTACACGAAATCAGATA-CGATGCTGA-T
1 GTCCCAGACAGGGTCTTACACGAAATCAAATATCGATGC-CACT
*
37010326 GTCCCAGACATGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
37010346 TGTAAAATAG
Statistics
Matches: 51, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
42 24 0.47
43 26 0.51
44 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.26
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACACGAAATCAAATATCGATGCCACT
Found at i:37025746 original size:47 final size:47
Alignment explanation
Indices: 37025693--37025787 Score: 138
Period size: 47 Copynumber: 2.0 Consensus size: 47
37025683 CTAATGTACT
37025693 TTTACCCAAAGGACCTTTTACCAGTACGT-TCGTCTCAAAATACTCTA
1 TTTACCCAAAGGACCTTTTACCAGTACGTCT-GTCTCAAAATACTCTA
** * *
37025740 TTTACCCAAAGGATTTTTTACTAGTACGTCTGTCTCAGAATACTCTA
1 TTTACCCAAAGGACCTTTTACCAGTACGTCTGTCTCAAAATACTCTA
37025787 T
1 T
37025788 CTCAAGACTA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 42 0.98
48 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (47 bp):
TTTACCCAAAGGACCTTTTACCAGTACGTCTGTCTCAAAATACTCTA
Found at i:37032438 original size:18 final size:18
Alignment explanation
Indices: 37032397--37032439 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
37032387 CAGTTTAATT
* * *
37032397 AAAAGAATATTAAAATTT
1 AAAAAAATATTAAAAATA
*
37032415 ATAAAAATATTAAAAATA
1 AAAAAAATATTAAAAATA
37032433 AAAAAAA
1 AAAAAAA
37032440 AAATCGATTC
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (18 bp):
AAAAAAATATTAAAAATA
Found at i:37036857 original size:28 final size:28
Alignment explanation
Indices: 37036817--37036895 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
37036807 GCAATCAAAT
* * *
37036817 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
37036845 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* * *
37036873 ATGACATTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
37036896 CAAATGATTC
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.34, C:0.10, G:0.25, T:0.30
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:37037108 original size:43 final size:44
Alignment explanation
Indices: 37037007--37037136 Score: 149
Period size: 44 Copynumber: 3.0 Consensus size: 44
37036997 TTTATAATTG
* * * *
37037007 TGATATTCGGGCTTTGAGCCTAGCAAGCTTTAA-GCTGGTGAATA
1 TGATA-TCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAATA
* *
37037051 TTATTATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA-A
1 TGA-TATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAATA
* *
37037095 TGATATCGGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAAT
1 TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAT
37037137 GAGTTCAGAC
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
42 12 0.16
43 23 0.32
44 28 0.38
45 10 0.14
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (44 bp):
TGATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAATA
Found at i:37039297 original size:40 final size:40
Alignment explanation
Indices: 37039235--37039481 Score: 235
Period size: 40 Copynumber: 6.2 Consensus size: 40
37039225 CGGATGATAA
* *
37039235 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-T
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATAT
* *
37039275 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
* *
37039315 CCAGGCTAAGTCCCGAAGGCGTTTGTGCGA--GCTATTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATAT
*
37039355 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
* * *
37039393 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATAT
* * *
37039434 CCGGGCTAAGTCCCGAAGGCGTTTGAGCTAGTGGCT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATAT
37039474 CC-GGCTAA
1 CCGGGCTAA
37039482 ACTCCGAAGG
Statistics
Matches: 175, Mismatches: 19, Indels: 27
0.79 0.09 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 39 0.22
40 125 0.71
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT
Found at i:37039447 original size:119 final size:120
Alignment explanation
Indices: 37039235--37039458 Score: 326
Period size: 119 Copynumber: 1.9 Consensus size: 120
37039225 CGGATGATAA
* * *
37039235 CCGGGCTAAGTCCCGAGAGCATTTGAGCTAGTGGCTAATTCCGGGCTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
* *
37039300 TGCGAGCTACTATATCCAGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
66 TGCAAGCTACTATAACCAGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
* * * *
37039355 CCGGGCTAAGTCCCGA-AGGCATTTGTGCGAGT-TATTATACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAGA-GCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTC
* *
37039418 GTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCGTTTG
65 GTGCAAGCTACTATAACCAGGCTAAGTCCCGAAGGCGTTTG
37039459 AGCTAGTGGC
Statistics
Matches: 92, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
119 64 0.70
120 28 0.30
ACGTcount: A:0.23, C:0.24, G:0.29, T:0.25
Consensus pattern (120 bp):
CCGGGCTAAGTCCCGAGAGCATTTGAGCGAGTGGATAATACCGGGCTAAGTCCCGAAGGCATTCG
TGCAAGCTACTATAACCAGGCTAAGTCCCGAAGGCGTTTGTGCGAGCTATTATAT
Found at i:37039491 original size:79 final size:79
Alignment explanation
Indices: 37039275--37039481 Score: 265
Period size: 79 Copynumber: 2.6 Consensus size: 79
37039265 GTGGCTAATT
* *
37039275 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCAGGCTAAGTCCCGAAGGCGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCAGGCTAAGTCCCGAAGGCATTTG
* * *
37039340 TGCGAGCTATTATAT
65 TGCAAGCTACTATAA
* *
37039355 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCAGGCTAAGTCCCGAAGGCATTTG
*
37039419 TGCAAGTTACTATAA
65 TGCAAGCTACTATAA
* * * *
37039434 CCGGGCTAAGTCCCGAAGGCGTTTGAGCTAGTGGCTATATCC-GGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCAGGCTAA
37039482 ACTCCGAAGG
Statistics
Matches: 111, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 72 0.65
80 38 0.34
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCAGGCTAAGTCCCGAAGGCATTTGT
GCAAGCTACTATAA
Found at i:37057246 original size:20 final size:20
Alignment explanation
Indices: 37057180--37057246 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
37057170 ATTTTGATAA
*
37057180 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
37057200 ACGTGACATGTATGATATGC
1 ACATGATATGTATGATATGC
37057220 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
37057240 ACATGAT
1 ACATGAT
37057247 GTATTCATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:37057322 original size:24 final size:24
Alignment explanation
Indices: 37057295--37057511 Score: 310
Period size: 24 Copynumber: 9.0 Consensus size: 24
37057285 GGAAGAAGTG
*
37057295 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37057319 CAAAAGGGCTTATGCCCTAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37057343 CAAAAGGGCTTATGCCCCAGGTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37057367 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37057391 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
37057415 TAAAAGGGCTTATGCCCCTGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
37057439 TAAAAGAGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
37057463 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
37057487 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
37057512 ATGACAAAGC
Statistics
Matches: 180, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
24 169 0.94
25 11 0.06
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:37064831 original size:20 final size:20
Alignment explanation
Indices: 37064806--37064864 Score: 118
Period size: 20 Copynumber: 3.0 Consensus size: 20
37064796 TAAAGATGTT
37064806 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
37064826 ATGTATGATATGCACATGAC
1 ATGTATGATATGCACATGAC
37064846 ATGTATGATATGCACATGA
1 ATGTATGATATGCACATGA
37064865 TGTATTCATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (20 bp):
ATGTATGATATGCACATGAC
Found at i:37064941 original size:24 final size:24
Alignment explanation
Indices: 37064914--37065130 Score: 337
Period size: 24 Copynumber: 9.0 Consensus size: 24
37064904 GGAGGAAGTG
37064914 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37064938 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37064962 CAAAAGGGCTTATGCCCCAATTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37064986 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
37065010 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
37065034 CAAAAGGGCTTATGCCCCTGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
37065058 TAAAAGGGCTTATGCCCAAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
37065082 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
37065106 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
37065131 ATGATAAAGC
Statistics
Matches: 181, Mismatches: 10, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
24 170 0.94
25 11 0.06
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:37068013 original size:20 final size:20
Alignment explanation
Indices: 37067988--37068054 Score: 75
Period size: 20 Copynumber: 3.4 Consensus size: 20
37067978 CACACACGTG
*
37067988 CCCTTGATTGTACTTTGGTA
1 CCCTTGATTGTACTTAGGTA
* *
37068008 CCCTTGATTGCACATACGTGT-
1 CCCTTGATTGTACTTA-G-GTA
37068029 CCC-TGATTGTACTTAGGTA
1 CCCTTGATTGTACTTAGGTA
37068048 CCCTTGA
1 CCCTTGA
37068055 ATGCACATAC
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
18 2 0.05
19 4 0.11
20 26 0.68
21 4 0.11
22 2 0.05
ACGTcount: A:0.18, C:0.25, G:0.19, T:0.37
Consensus pattern (20 bp):
CCCTTGATTGTACTTAGGTA
Found at i:37068038 original size:40 final size:40
Alignment explanation
Indices: 37067978--37068092 Score: 142
Period size: 40 Copynumber: 2.8 Consensus size: 40
37067968 TTTGAATACA
* *
37067978 CACACACGTG-CCCTTGATTGTACTTTGGTACCCTTGATTG
1 CACATACGTGTCCC-TGATTGTACTTTGGTACCCTTGAATG
*
37068018 CACATACGTGTCCCTGATTGTACTTAGGTACCCTTGAATG
1 CACATACGTGTCCCTGATTGTACTTTGGTACCCTTGAATG
* * *
37068058 CACATACATATGCCGCTGTTTGTACTTTGGTACCC
1 CACATACGTGT-CC-CTGATTGTACTTTGGTACCC
37068093 CTAAATGGAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
40 42 0.65
41 5 0.08
42 18 0.28
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (40 bp):
CACATACGTGTCCCTGATTGTACTTTGGTACCCTTGAATG
Found at i:37071442 original size:30 final size:30
Alignment explanation
Indices: 37071378--37071443 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
37071368 ACACGGCCAT
* *
37071378 GTGTCACACACGGCCTAGCGACACAGTTGT
1 GTGTCACACACGGCCTAGCGACACAGCTGG
* * *
37071408 GTGTCACACACGGCCTGGTGACACGGCTGG
1 GTGTCACACACGGCCTAGCGACACAGCTGG
37071438 GTGTCA
1 GTGTCA
37071444 TTTGTAAATT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.20, C:0.29, G:0.32, T:0.20
Consensus pattern (30 bp):
GTGTCACACACGGCCTAGCGACACAGCTGG
Found at i:37076471 original size:207 final size:207
Alignment explanation
Indices: 37076116--37076492 Score: 682
Period size: 207 Copynumber: 1.8 Consensus size: 207
37076106 GAGATGAAGG
*
37076116 ACTTGGGATGGAGATTCTCAGAGATAGAAAAAAATGTAAATTGTACCTAAGTTAGAAAGGGTACA
1 ACTTGGGATGGAGATTCTCAGAGATAGAAAAAAATGTAAATTGTACCTAAGTCAGAAAGGGTACA
* *
37076181 TTGAGAAACTTCTTTGCATGTTCAATATGCAGAATGCCAAGGCTGTTAGGACTCCATTAACAGTC
66 TTAAGAAACTTCTTTGCATGTTCAATATGCAAAATGCCAAGGCTGTTAGGACTCCATTAACAGTC
*
37076246 CACTTTAGACTTTCATCAGCTTTGTCTCTACAATCAAATGTATCTACATATAAAGGAGATTCTCA
131 CACTTCAGACTTTCATCAGCTTTGTCTCTACAATCAAATGTATCTACATATAAAGGAGATTCTCA
37076311 GCCAAATAAGAT
196 GCCAAATAAGAT
37076323 ACTTGGGATGGAGATTCTCAGAGATAGAAAAAAATGTAAATTGTACCTAAGTCAGAAAGGGTACA
1 ACTTGGGATGGAGATTCTCAGAGATAGAAAAAAATGTAAATTGTACCTAAGTCAGAAAGGGTACA
* **
37076388 TTAAGAAAGTTCTTTGCATGTTCAATATGCAAAATGCCAAGGCTGTTAGGACTCTGTTAACAGTC
66 TTAAGAAACTTCTTTGCATGTTCAATATGCAAAATGCCAAGGCTGTTAGGACTCCATTAACAGTC
*
37076453 CACTTCAGACTTTCATCAGCTTTTTCTCTACAATCAAATG
131 CACTTCAGACTTTCATCAGCTTTGTCTCTACAATCAAATG
37076493 ATGAGATTGA
Statistics
Matches: 162, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
207 162 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30
Consensus pattern (207 bp):
ACTTGGGATGGAGATTCTCAGAGATAGAAAAAAATGTAAATTGTACCTAAGTCAGAAAGGGTACA
TTAAGAAACTTCTTTGCATGTTCAATATGCAAAATGCCAAGGCTGTTAGGACTCCATTAACAGTC
CACTTCAGACTTTCATCAGCTTTGTCTCTACAATCAAATGTATCTACATATAAAGGAGATTCTCA
GCCAAATAAGAT
Found at i:37078025 original size:119 final size:119
Alignment explanation
Indices: 37077813--37078032 Score: 271
Period size: 119 Copynumber: 1.8 Consensus size: 119
37077803 AGAAAAATTA
* * * * * ** *
37077813 TTTAAGCTCAACTCCTATCTCTTAAGCTGTAGCCTCACCTTTGTATGATCTACTATTGGTTTTAA
1 TTTAAACTCAAATCCTATCTCTCAAGCTGCAACCTCACCTTTGTACAATCTACTATTGGTTCTAA
* *
37077878 CTCATTGCTCTTTCAATCACTTAGAAAGTGTCTACAGTAACCATCTAAGAATGG
66 CACATTGCTCTTTCAATCACTTAAAAAGTGTCTACAGTAACCATCTAAGAATGG
* * *
37077932 TTTAAACTCAAATCCTATCTCTCAAGTTGCAATCTCACCTTTGTACAATCTATTATTGGTTCTAA
1 TTTAAACTCAAATCCTATCTCTCAAGCTGCAACCTCACCTTTGTACAATCTACTATTGGTTCTAA
* * * *
37077997 CACCTTGTTC-TTCTGATCACTTAAAAAGTGTTTACA
66 CACATTGCTCTTTC-AATCACTTAAAAAGTGTCTACA
37078033 ACTACTATCT
Statistics
Matches: 83, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
118 3 0.04
119 80 0.96
ACGTcount: A:0.28, C:0.23, G:0.11, T:0.38
Consensus pattern (119 bp):
TTTAAACTCAAATCCTATCTCTCAAGCTGCAACCTCACCTTTGTACAATCTACTATTGGTTCTAA
CACATTGCTCTTTCAATCACTTAAAAAGTGTCTACAGTAACCATCTAAGAATGG
Found at i:37085998 original size:61 final size:60
Alignment explanation
Indices: 37085841--37086009 Score: 159
Period size: 61 Copynumber: 2.8 Consensus size: 60
37085831 AAAAACTTTG
* * *
37085841 AAAGGAAAGCCTTCTA-GGTAAAACTCTGGATAGGAAAGCCTTTGTGTCGAGTAGTAGATAT
1 AAAGGATAGCCTT-TATGGT-AAACTCTTGATAGGAAAGCCTTTGTGTCGAGTAATAGATAT
* * * *
37085902 AATGGATAGTCTTTATAGCGTAAA-T-TTGGACAGGAAAGCCTTTGTAG-CGAGTAAT-GAATGT
1 AAAGGATAGCCTTTAT-G-GTAAACTCTT-GATAGGAAAGCCTTTGT-GTCGAGTAATAG-ATAT
*
37085963 AAAGGATAGCCTTTATGGTGAAACTCTTGATAGGAAAGCTTTTGTGT
1 AAAGGATAGCCTTTATGGT-AAACTCTTGATAGGAAAGCCTTTGTGT
37086010 AAACCTCTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
59 2 0.02
60 9 0.10
61 67 0.77
62 7 0.08
63 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (60 bp):
AAAGGATAGCCTTTATGGTAAACTCTTGATAGGAAAGCCTTTGTGTCGAGTAATAGATAT
Found at i:37091107 original size:43 final size:42
Alignment explanation
Indices: 37091046--37091214 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
37091036 TAGGGTTTCT
* * *
37091046 GATATGTGCTCTCATGTAAGACCACATCTGAGACGTTGGCATC
1 GATATGTGAT-TCGTGTAAGACCACATCTGGGACGTTGGCATC
** * * *
37091089 GATATGTGATTACGTGTAAGACCATGTGTGGGACATTGGCATT
1 GATATGTGATT-CGTGTAAGACCACATCTGGGACGTTGGCATC
* * * * *
37091132 G-TATTTGATTTGTGTAAGACC-CTGTTTGGGATAG-TGGCATC
1 GATATGTGATTCGTGTAAGACCAC-ATCTGGGA-CGTTGGCATC
* *
37091173 GATATGTGATTGCATGTAAGACCATATCTGGGACGTTGGCAT
1 GATATGTGATT-CGTGTAAGACCACATCTGGGACGTTGGCAT
37091215 TGTATGATAT
Statistics
Matches: 97, Mismatches: 22, Indels: 14
0.73 0.17 0.11
Matches are distributed among these distances:
41 24 0.25
42 18 0.19
43 55 0.57
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (42 bp):
GATATGTGATTCGTGTAAGACCACATCTGGGACGTTGGCATC
Found at i:37093323 original size:33 final size:33
Alignment explanation
Indices: 37093281--37093349 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 33
37093271 AGTCCAAATG
37093281 CTTATTGATAGTACTAGAAACAACATATGTTTT
1 CTTATTGATAGTACTAGAAACAACATATGTTTT
*
37093314 CTTATTGATAGTACTAGAAAGAACATATGTTTT
1 CTTATTGATAGTACTAGAAACAACATATGTTTT
37093347 CTT
1 CTT
37093350 TTTACTTATT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41
Consensus pattern (33 bp):
CTTATTGATAGTACTAGAAACAACATATGTTTT
Found at i:37099102 original size:20 final size:21
Alignment explanation
Indices: 37099057--37099112 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
37099047 GTGGGGGTCT
37099057 ACATGCCCATGTGAAGGCCCC
1 ACATGCCCATGTGAAGGCCCC
* **
37099078 ACATGCCCATGTGGAGG-GGC
1 ACATGCCCATGTGAAGGCCCC
*
37099098 ACATGCCCGTGTGAA
1 ACATGCCCATGTGAA
37099113 CAGCCCGTGT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 14 0.47
21 16 0.53
ACGTcount: A:0.23, C:0.30, G:0.30, T:0.16
Consensus pattern (21 bp):
ACATGCCCATGTGAAGGCCCC
Done.