Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 120 of 290
Found at i:37457667 original size:47 final size:46
Alignment explanation
Indices: 37457587--37457780 Score: 228
Period size: 47 Copynumber: 4.1 Consensus size: 46
37457577 CATACATATT
* * * *
37457587 TCACATTAGCCATTCGACTTTACCACATATATGCATGTTCATATTC-
1 TCACATTGGCCATTCG-CCTTATCACATATATGCATGTTCACATTCA
** * *
37457633 TCCACATTGGTTATTCAGCCTTATCACACATATGCATGCTCACATTCA
1 T-CACATTGGCCATTC-GCCTTATCACATATATGCATGTTCACATTCA
37457681 TCACATTGGCCATTCGTCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCG-CCTTATCACATATATGCATGTTCACATTCA
* * **
37457728 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTC-GCCTTATCACATATATGCATGTTCACATTCA
37457775 TCACAT
1 TCACAT
37457781 AAAATCCTAA
Statistics
Matches: 127, Mismatches: 16, Indels: 9
0.84 0.11 0.06
Matches are distributed among these distances:
46 2 0.02
47 122 0.96
48 3 0.02
ACGTcount: A:0.27, C:0.28, G:0.09, T:0.35
Consensus pattern (46 bp):
TCACATTGGCCATTCGCCTTATCACATATATGCATGTTCACATTCA
Found at i:37466028 original size:23 final size:23
Alignment explanation
Indices: 37466001--37466111 Score: 104
Period size: 23 Copynumber: 4.9 Consensus size: 23
37465991 ATCTTACTAT
* *
37466001 TTTCAACTCATTGGAGCTTACCG
1 TTTCAGCTCATTAGAGCTTACCG
* *
37466024 TTTCAGCTC-GTATGAGCTTACTG
1 TTTCAGCTCATTA-GAGCTTACCG
* *
37466047 TTT-AGCTCAATAGAGCTTACTG
1 TTTCAGCTCATTAGAGCTTACCG
*
37466069 -TTCAGCTCGA-TAGAGCTTACCA
1 TTTCAGCTC-ATTAGAGCTTACCG
*
37466091 TTTTAGCTCATTAGAGCTTAC
1 TTTCAGCTCATTAGAGCTTAC
37466112 TATTCATCAG
Statistics
Matches: 74, Mismatches: 8, Indels: 12
0.79 0.09 0.13
Matches are distributed among these distances:
21 2 0.03
22 32 0.43
23 40 0.54
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (23 bp):
TTTCAGCTCATTAGAGCTTACCG
Found at i:37466062 original size:22 final size:22
Alignment explanation
Indices: 37466014--37466112 Score: 103
Period size: 22 Copynumber: 4.4 Consensus size: 22
37466004 CAACTCATTG
* *
37466014 GAGCTTACCGTTTCAGCTC-GTA
1 GAGCTTACTGTTT-AGCTCAATA
37466036 TGAGCTTACTGTTTAGCTCAATA
1 -GAGCTTACTGTTTAGCTCAATA
* *
37466059 GAGCTTACTGTTCAGCTCGATA
1 GAGCTTACTGTTTAGCTCAATA
*
37466081 GAGCTTACCAT-TTTAGCTCATTA
1 GAGCTTA-C-TGTTTAGCTCAATA
37466104 GAGCTTACT
1 GAGCTTACT
37466113 ATTCATCAGC
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
21 1 0.02
22 33 0.50
23 31 0.47
24 1 0.02
ACGTcount: A:0.23, C:0.22, G:0.19, T:0.35
Consensus pattern (22 bp):
GAGCTTACTGTTTAGCTCAATA
Found at i:37466096 original size:45 final size:44
Alignment explanation
Indices: 37465979--37466117 Score: 147
Period size: 45 Copynumber: 3.1 Consensus size: 44
37465969 TACCGATATA
* * * * *
37465979 TCAGCTCGTAAGATCTTACTATTTTCAACTCATTGGAGCTTACCGTT
1 TCAGCTCGT-AGAGCTTACCATTTT-AGCTCATTAGAGCTTACTG-T
*
37466026 TCAGCTCGTATGAGCTTA-C-TGTTTAGCTCAATAGAGCTTACTGT
1 TCAGCTCGTA-GAGCTTACCAT-TTTAGCTCATTAGAGCTTACTGT
*
37466070 TCAGCTCGATAGAGCTTACCATTTTAGCTCATTAGAGCTTACTAT
1 TCAGCTCG-TAGAGCTTACCATTTTAGCTCATTAGAGCTTACTGT
37466115 TCA
1 TCA
37466118 TCAGCTCAAG
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
44 16 0.20
45 43 0.54
46 5 0.06
47 15 0.19
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (44 bp):
TCAGCTCGTAGAGCTTACCATTTTAGCTCATTAGAGCTTACTGT
Found at i:37469638 original size:14 final size:15
Alignment explanation
Indices: 37469608--37469639 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
37469598 CACTGATATC
37469608 AATAGCTCCATACAG
1 AATAGCTCCATACAG
37469623 AATAGCTCCA-ACAG
1 AATAGCTCCATACAG
37469637 AAT
1 AAT
37469640 TAAAAGAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.44, C:0.25, G:0.12, T:0.19
Consensus pattern (15 bp):
AATAGCTCCATACAG
Found at i:37473749 original size:45 final size:47
Alignment explanation
Indices: 37473643--37473767 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 47
37473633 AGCTCGTAAG
**
37473643 AGCTTACCGATATATCAGCTCGTAAGAGCTTACTATTTTCAGCTCATTGG
1 AGCTTACCG-T-T-TCAGCTCGTAAGAGCTTACTATTTTCAGCTCATTAA
* *
37473693 AGCTTACCGTTTCAGCTTGTACGAGCTTACTA-TTT-AGCTCGA-TAA
1 AGCTTACCGTTTCAGCTCGTAAGAGCTTACTATTTTCAGCTC-ATTAA
* * * *
37473738 AGCTTATCGTTTTAGCTCATCAGAGCTTAC
1 AGCTTACCGTTTCAGCTCGTAAGAGCTTAC
37473768 CGTTCATCAA
Statistics
Matches: 64, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
45 30 0.47
46 4 0.06
47 19 0.30
48 1 0.02
49 1 0.02
50 9 0.14
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (47 bp):
AGCTTACCGTTTCAGCTCGTAAGAGCTTACTATTTTCAGCTCATTAA
Found at i:37473764 original size:23 final size:23
Alignment explanation
Indices: 37473725--37473771 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
37473715 GAGCTTACTA
*
37473725 TTTAGCTCGATAAAGCTTATCGT
1 TTTAGCTCGATAAAGCTTACCGT
*
37473748 TTTAGCTC-ATCAGAGCTTACCGT
1 TTTAGCTCGAT-AAAGCTTACCGT
37473771 T
1 T
37473772 CATCAACTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 19 0.90
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.38
Consensus pattern (23 bp):
TTTAGCTCGATAAAGCTTACCGT
Found at i:37475299 original size:27 final size:27
Alignment explanation
Indices: 37475237--37475288 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
37475227 TACAGTCTCG
*
37475237 TCAAACTATCCCATGTTTAATGTCCCA
1 TCAAACTATCCCATATTTAATGTCCCA
37475264 TCAAACTATCCCATATTTAATGTCC
1 TCAAACTATCCCATATTTAATGTCC
37475289 TGTCGGACTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.29, G:0.06, T:0.35
Consensus pattern (27 bp):
TCAAACTATCCCATATTTAATGTCCCA
Found at i:37475499 original size:45 final size:45
Alignment explanation
Indices: 37475382--37475503 Score: 138
Period size: 45 Copynumber: 2.7 Consensus size: 45
37475372 TTAAAGGATG
* * *
37475382 TCATAGCATCTTTTAGCTATGATCTTACTCATTTCTATCATGATG
1 TCATAGCATCTTTTAGCTATGGTCTTACTCATTTCTACCATGATA
* * * * * * *
37475427 TTATAGCATCTTTCAGTTTTGGCCTTACTTATATT-TCCCATGATA
1 TCATAGCATCTTTTAGCTATGGTCTTACTCAT-TTCTACCATGATA
37475472 TCATAGCATCTTTTAGCTATGGTCTTACTCAT
1 TCATAGCATCTTTTAGCTATGGTCTTACTCAT
37475504 CTTGGCATAT
Statistics
Matches: 60, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
45 58 0.97
46 2 0.03
ACGTcount: A:0.23, C:0.20, G:0.11, T:0.45
Consensus pattern (45 bp):
TCATAGCATCTTTTAGCTATGGTCTTACTCATTTCTACCATGATA
Found at i:37479141 original size:50 final size:50
Alignment explanation
Indices: 37479060--37479166 Score: 151
Period size: 50 Copynumber: 2.1 Consensus size: 50
37479050 GAGAATTCTT
* * *
37479060 TAGAAAGCCTTTGTGGCTAATCTTGTAAAAAGCCTTTGTGGCGTATTATC
1 TAGAAAGCCTTTGTGGCTAATATTGTAAAAAGCCTTTGTAGAGTATTATC
* * *
37479110 TAGAAAGCCTTTGTGGCTAATATTGTGAAAAGCTTTTTTAGAGTATTATC
1 TAGAAAGCCTTTGTGGCTAATATTGTAAAAAGCCTTTGTAGAGTATTATC
*
37479160 TGGAAAG
1 TAGAAAG
37479167 ACCGTGTGAC
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.36
Consensus pattern (50 bp):
TAGAAAGCCTTTGTGGCTAATATTGTAAAAAGCCTTTGTAGAGTATTATC
Found at i:37479145 original size:24 final size:24
Alignment explanation
Indices: 37479063--37479142 Score: 90
Period size: 25 Copynumber: 3.2 Consensus size: 24
37479053 AATTCTTTAG
*
37479063 AAAGCCTTTGTGGCTAATCTTGTAA
1 AAAGCCTTTGTGGCTAATATTGT-A
* *
37479088 AAAGCCTTTGTGGCGTATTA-TCTA
1 AAAGCCTTTGTGGC-TAATATTGTA
37479112 GAAAGCCTTTGTGGCTAATATTGTGA
1 -AAAGCCTTTGTGGCTAATATTGT-A
37479138 AAAGC
1 AAAGC
37479143 TTTTTTAGAG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
24 5 0.11
25 37 0.80
26 4 0.09
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.34
Consensus pattern (24 bp):
AAAGCCTTTGTGGCTAATATTGTA
Found at i:37482335 original size:54 final size:54
Alignment explanation
Indices: 37482277--37482394 Score: 202
Period size: 54 Copynumber: 2.2 Consensus size: 54
37482267 TTAACACCAC
37482277 AAATCACT-TACTAATATATTTCAGCAACTCAATCTGAGAAAAGACGACCCTCAA
1 AAATC-CTCTACTAATATATTTCAGCAACTCAATCTGAGAAAAGACGACCCTCAA
*
37482331 AAATCTTCTACTAATATATTTCAGCAACTCAATCTGAGAAAAGACGACCCTCAA
1 AAATCCTCTACTAATATATTTCAGCAACTCAATCTGAGAAAAGACGACCCTCAA
*
37482385 AAATCTTCTA
1 AAATCCTCTA
37482395 GTATTGCTCC
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
53 1 0.02
54 61 0.98
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (54 bp):
AAATCCTCTACTAATATATTTCAGCAACTCAATCTGAGAAAAGACGACCCTCAA
Found at i:37483635 original size:86 final size:86
Alignment explanation
Indices: 37483490--37483659 Score: 313
Period size: 86 Copynumber: 2.0 Consensus size: 86
37483480 TTATGAGAAG
*
37483490 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCGCCACCACCACC
1 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC
37483555 AGGTGCAAGTTAAACTATAAA
66 AGGTGCAAGTTAAACTATAAA
* *
37483576 AAGAAGCGTAAGCGACCACCAGCTCAACAGATCCCGACTCTACCATTGCCGCCACCACCACCACC
1 AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC
37483641 AGGTGCAAGTTAAACTATA
66 AGGTGCAAGTTAAACTATA
37483660 TATATGCATC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 81 1.00
ACGTcount: A:0.35, C:0.35, G:0.16, T:0.14
Consensus pattern (86 bp):
AAGAAGCGTAAGCGACCACCAACTCAACAGATCCCGACTCTACCAATGCCGCCACCACCACCACC
AGGTGCAAGTTAAACTATAAA
Found at i:37487113 original size:104 final size:104
Alignment explanation
Indices: 37486933--37487137 Score: 365
Period size: 104 Copynumber: 2.0 Consensus size: 104
37486923 AAACATAATT
* * *
37486933 GAACATCCTCATCAAGCTATTGAGAGAAGCTAAATGAGATTTCCATTGGGCATCACCTAGACGTT
1 GAACATCCTCATCAAGCTATTGAGAGAAGCTAAATGAGATCTCCATTGAGCATCACCTAGACATT
37486998 GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTTTAA
66 GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTTTAA
* *
37487037 GAACATCCTCATCAAGCTATTGAGAGAAGCTAAATGAGATCTCCATTGAGTATCGCCTAGACATT
1 GAACATCCTCATCAAGCTATTGAGAGAAGCTAAATGAGATCTCCATTGAGCATCACCTAGACATT
37487102 GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTT
66 GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTT
37487138 CAAGCTCACC
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
104 96 1.00
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (104 bp):
GAACATCCTCATCAAGCTATTGAGAGAAGCTAAATGAGATCTCCATTGAGCATCACCTAGACATT
GGAGAGTACCAACTTGATTTTTCCCTTTGCCAGTTTTAA
Found at i:37488462 original size:30 final size:30
Alignment explanation
Indices: 37488426--37488533 Score: 126
Period size: 30 Copynumber: 3.4 Consensus size: 30
37488416 GGAACTTGAG
*
37488426 AAGACTTGATATCTCGTTCAGGAGCTTGGA
1 AAGACTTGATATCTCATTCAGGAGCTTGGA
* *
37488456 AAGACTTGATATCTCATTCAAGATCTTGGGTTTGA
1 AAGACTTGATATCTCATTCAGGAGCTT--G---GA
*
37488491 GAAGATTTGATATCTCATTCAGGAGCTTGGA
1 -AAGACTTGATATCTCATTCAGGAGCTTGGA
37488522 AAGACTTGATAT
1 AAGACTTGATAT
37488534 TTGATTTTTC
Statistics
Matches: 65, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
30 35 0.54
31 2 0.03
32 1 0.02
34 1 0.02
35 2 0.03
36 24 0.37
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (30 bp):
AAGACTTGATATCTCATTCAGGAGCTTGGA
Found at i:37489992 original size:50 final size:50
Alignment explanation
Indices: 37489924--37490023 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
37489914 CATTGAAAAC
*
37489924 TTTATATTTCAATAATTTGGGTTTTGCTATAAGGATCGATCGCAACATGG
1 TTTATACTTCAATAATTTGGGTTTTGCTATAAGGATCGATCGCAACATGG
*
37489974 TTTATACTTCAATAATTTGGGTTTTGCTATGAGGATCGATCGCAACATGG
1 TTTATACTTCAATAATTTGGGTTTTGCTATAAGGATCGATCGCAACATGG
37490024 ACTCCATTGT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (50 bp):
TTTATACTTCAATAATTTGGGTTTTGCTATAAGGATCGATCGCAACATGG
Found at i:37492938 original size:71 final size:73
Alignment explanation
Indices: 37492854--37493033 Score: 197
Period size: 71 Copynumber: 2.5 Consensus size: 73
37492844 TTCGGACCTA
* * *** * * *
37492854 AAGGGAGAACATTCAGCCATCGATGTCGCGATAACAACCACTCAATGTCGGGACAACAAATTTTG
1 AAGGG-GAGCATTCAACCATCGATGTCGCGATAACAACCACTCAATGTCACAACAAAAAACTTCG
37492919 AA-CT-TAG
65 AACCTATAG
* * * *
37492926 AAGGGGAGCATTCAACCTTCAATGTCGCAACAACAACCACTCAATGTCACAACAAAAAACTTCGA
1 AAGGGGAGCATTCAACCATCGATGTCGCGATAACAACCACTCAATGTCACAACAAAAAACTTCGA
37492991 ACCTATAG
66 ACCTATAG
* *
37492999 -A-GGGAGCATTCAATCATCGATGTTGCGATAACAAC
1 AAGGGGAGCATTCAACCATCGATGTCGCGATAACAAC
37493034 TATTCCATGT
Statistics
Matches: 88, Mismatches: 18, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
71 77 0.88
72 8 0.09
73 3 0.03
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.20
Consensus pattern (73 bp):
AAGGGGAGCATTCAACCATCGATGTCGCGATAACAACCACTCAATGTCACAACAAAAAACTTCGA
ACCTATAG
Found at i:37495257 original size:44 final size:44
Alignment explanation
Indices: 37495197--37495310 Score: 142
Period size: 44 Copynumber: 2.6 Consensus size: 44
37495187 AGGATTCTAG
* * *
37495197 TATGTGATTT-CGTGTAAGACCATGTCTAGGACATTGGCATCGA
1 TATGTGATTTACGTGTAAGACCATGTCTAGGAAAATGACATCGA
* * *
37495240 TTTGTGATTTACGTGTAAGACCCTGTCTGGGAAAATGACATCGA
1 TATGTGATTTACGTGTAAGACCATGTCTAGGAAAATGACATCGA
* *
37495284 TATGTGA-TTACATGTAAGACCACGTCT
1 TATGTGATTTACGTGTAAGACCATGTCT
37495311 GGGATATGGA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 26 0.43
44 34 0.57
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (44 bp):
TATGTGATTTACGTGTAAGACCATGTCTAGGAAAATGACATCGA
Found at i:37499882 original size:39 final size:39
Alignment explanation
Indices: 37499839--37499956 Score: 148
Period size: 39 Copynumber: 3.0 Consensus size: 39
37499829 CTTATATCCC
* *
37499839 TGATCACACTTATGTGCCAC-TATCGTACTTCGATACCCT
1 TGATCACACTTATGTGCC-CTTATCATACTTCGGTACCCT
* *
37499878 TGATCAAACTTATGTGCCCTTATCATACTTCGGTACACT
1 TGATCACACTTATGTGCCCTTATCATACTTCGGTACCCT
* * * *
37499917 TGATCGCATTTACGTGCCCTTGTCATACTTCGGTACCCT
1 TGATCACACTTATGTGCCCTTATCATACTTCGGTACCCT
37499956 T
1 T
37499957 TATTGCACTT
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 1 0.01
39 67 0.99
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (39 bp):
TGATCACACTTATGTGCCCTTATCATACTTCGGTACCCT
Found at i:37499907 original size:19 final size:19
Alignment explanation
Indices: 37499822--37499907 Score: 54
Period size: 19 Copynumber: 4.6 Consensus size: 19
37499812 TAGTTAATTA
*
37499822 TTAT-ATACTTATAT-CCC
1 TTATCATACTTATGTGCCC
* *
37499839 TGATCACACTTATGTGCCAC
1 TTATCATACTTATGTGCC-C
* * *
37499859 -TATCGTACTT-CGATACCC
1 TTATCATACTTATG-TGCCC
*
37499877 TTGATCAAACTTATGTGCCC
1 TT-ATCATACTTATGTGCCC
37499897 TTATCATACTT
1 TTATCATACTT
37499908 CGGTACACTT
Statistics
Matches: 49, Mismatches: 13, Indels: 12
0.66 0.18 0.16
Matches are distributed among these distances:
17 3 0.06
18 10 0.20
19 21 0.43
20 14 0.29
21 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.09, T:0.38
Consensus pattern (19 bp):
TTATCATACTTATGTGCCC
Found at i:37500062 original size:39 final size:39
Alignment explanation
Indices: 37499977--37500064 Score: 140
Period size: 39 Copynumber: 2.3 Consensus size: 39
37499967 ACAATTCCTG
* *
37499977 TCATACTTCAGTAGCCTTGGTTGCACCTACGTGCCCCTA
1 TCATACTTCGGTAGCCCTGGTTGCACCTACGTGCCCCTA
37500016 TCATACTTCGGTAGCCCTGGTTGCACCTACGTGCCCCTA
1 TCATACTTCGGTAGCCCTGGTTGCACCTACGTGCCCCTA
**
37500055 TTGTACTTCG
1 TCATACTTCG
37500065 ATACTCTTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.16, C:0.33, G:0.19, T:0.32
Consensus pattern (39 bp):
TCATACTTCGGTAGCCCTGGTTGCACCTACGTGCCCCTA
Found at i:37503772 original size:29 final size:27
Alignment explanation
Indices: 37503754--37503823 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
37503744 ATATTAAGTC
37503754 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
37503781 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
37503809 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
37503824 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:37503817 original size:28 final size:28
Alignment explanation
Indices: 37503754--37503851 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
37503744 ATATTAAGTC
*
37503754 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
37503781 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
37503809 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
37503838 CGCACACTTAGTGC
1 CGCACACTTAGTGC
37503852 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:37512367 original size:21 final size:20
Alignment explanation
Indices: 37512335--37512383 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
37512325 TTTTTCGAAT
* * *
37512335 TTGTTTACCTATTGTTATTA
1 TTGTTTATCTATTATTACTA
37512355 TTCGTTTATCTATTATTACTA
1 TT-GTTTATCTATTATTACTA
37512376 TTGTTTAT
1 TTGTTTAT
37512384 ATTACAGGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.20, C:0.10, G:0.08, T:0.61
Consensus pattern (20 bp):
TTGTTTATCTATTATTACTA
Found at i:37525569 original size:19 final size:19
Alignment explanation
Indices: 37525515--37525560 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
37525505 CAACACGACT
37525515 TAAGCCACACCACACGGCC
1 TAAGCCACACCACACGGCC
37525534 TAAGCCACACCACACGGCC
1 TAAGCCACACCACACGGCC
37525553 TAAGCCAC
1 TAAGCCAC
37525561 CTTACACGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.33, C:0.46, G:0.15, T:0.07
Consensus pattern (19 bp):
TAAGCCACACCACACGGCC
Found at i:37528264 original size:41 final size:42
Alignment explanation
Indices: 37528205--37528312 Score: 112
Period size: 41 Copynumber: 2.6 Consensus size: 42
37528195 AATATCAACA
* * * *
37528205 GTATATGGCACTTGGTGTGCGAGATCACGATAGCTTCGGCTAT
1 GTATA-GGCACTTAGTGTGCGAGATCAAGATAACTTCAGCTAT
* * *
37528248 GTA-AGGCACTTAGTGTGCGAAATTAATATAACTTCAGCTAT
1 GTATAGGCACTTAGTGTGCGAGATCAAGATAACTTCAGCTAT
*
37528289 GTATTA-GTACTTAGTGTGCGAGAT
1 GTA-TAGGCACTTAGTGTGCGAGAT
37528313 ATCGAGTATT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
41 33 0.61
42 17 0.31
43 4 0.07
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (42 bp):
GTATAGGCACTTAGTGTGCGAGATCAAGATAACTTCAGCTAT
Found at i:37530664 original size:30 final size:29
Alignment explanation
Indices: 37530606--37530685 Score: 115
Period size: 30 Copynumber: 2.7 Consensus size: 29
37530596 TTTTCGAGCA
* * *
37530606 TAGGGGTAAAATGGTCATTTCGCAAAGTC
1 TAGGGGCAAAATGGTTATTTTGCAAAGTC
37530635 TAGGGGCAAAATGGTTATTTTGCCAAAGTC
1 TAGGGGCAAAATGGTTATTTTG-CAAAGTC
*
37530665 TAGAGGCAAAATGGTTATTTT
1 TAGGGGCAAAATGGTTATTTT
37530686 ACTGAAGATA
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
29 19 0.41
30 27 0.59
ACGTcount: A:0.31, C:0.11, G:0.26, T:0.31
Consensus pattern (29 bp):
TAGGGGCAAAATGGTTATTTTGCAAAGTC
Found at i:37531124 original size:47 final size:47
Alignment explanation
Indices: 37531057--37531235 Score: 177
Period size: 46 Copynumber: 3.8 Consensus size: 47
37531047 CCATATTATT
*
37531057 AGAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGCATTAGGACG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTAGGACG
* * * * *
37531105 AGTGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCGGCCTCGAGACG
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTAG-GACG
* * * * *
37531151 TA-AGCCAGTGTAAGA-CATGTCTGGGATATGGTATCGACTTGGGATG
1 -AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTAGGACG
* * *
37531197 TGAGCCAGTGTAAGATCGTGTCTGGGACATGGCATCGGC
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
37531236 ACCTTACCCA
Statistics
Matches: 106, Mismatches: 20, Indels: 11
0.77 0.15 0.08
Matches are distributed among these distances:
45 2 0.02
46 51 0.48
47 40 0.38
48 13 0.12
ACGTcount: A:0.25, C:0.19, G:0.34, T:0.23
Consensus pattern (47 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTAGGACG
Found at i:37538963 original size:46 final size:46
Alignment explanation
Indices: 37538869--37538992 Score: 157
Period size: 46 Copynumber: 2.7 Consensus size: 46
37538859 ATTGGTATTA
*
37538869 AGACGAGT-GCTAGTGTAAGACATGTTTGGGACATGCATCGGCCTCG
1 AGACGA-TAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG
37538915 AGACG-TAAGCTAGTGTAAGACATGTCTGGGACATGCATCGG-CTACG
1 AGACGAT-AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CG
*
37538961 AGATGATAG-TCAGTGTAAGACCATGTCTGGGA
1 AGACGATAGCT-AGTGTAAGA-CATGTCTGGGA
37538993 TATGGCTGTA
Statistics
Matches: 70, Mismatches: 2, Indels: 11
0.84 0.02 0.13
Matches are distributed among these distances:
44 1 0.01
45 3 0.04
46 54 0.77
47 12 0.17
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.23
Consensus pattern (46 bp):
AGACGATAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCG
Found at i:37540616 original size:38 final size:38
Alignment explanation
Indices: 37540571--37540644 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
37540561 TTAAAATTGT
*
37540571 GAAAATCACTTGAAGTAATTAAAACCTTATCTTTAAAG
1 GAAAATCACTTGAAGTAACTAAAACCTTATCTTTAAAG
* * *
37540609 GAAAATCACTTGAAGTGACTAGAGCCTTATCTTTAA
1 GAAAATCACTTGAAGTAACTAAAACCTTATCTTTAA
37540645 GCCTTATCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.31
Consensus pattern (38 bp):
GAAAATCACTTGAAGTAACTAAAACCTTATCTTTAAAG
Found at i:37548968 original size:13 final size:13
Alignment explanation
Indices: 37548947--37548983 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
37548937 AGACAGGGAT
*
37548947 ACGCTCGTGTGAC
1 ACGCCCGTGTGAC
37548960 ACGCCCGTGTGAC
1 ACGCCCGTGTGAC
37548973 ACGCCCGTGTG
1 ACGCCCGTGTG
37548984 CGATTGCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.14, C:0.35, G:0.32, T:0.19
Consensus pattern (13 bp):
ACGCCCGTGTGAC
Found at i:37549425 original size:39 final size:39
Alignment explanation
Indices: 37549382--37549461 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
37549372 CTTCTCAATT
*
37549382 TATAATCCCTATAAATAATATCTAAAAATAATCCATAAG
1 TATAATCCCTATAAATAATATCTAAAAACAATCCATAAG
* *
37549421 TATAATCCCTATCAATAATATCTCAAAACAATCCATAAG
1 TATAATCCCTATAAATAATATCTAAAAACAATCCATAAG
37549460 TA
1 TA
37549462 ATCATCCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.49, C:0.19, G:0.03, T:0.30
Consensus pattern (39 bp):
TATAATCCCTATAAATAATATCTAAAAACAATCCATAAG
Found at i:37601868 original size:15 final size:15
Alignment explanation
Indices: 37601848--37601877 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37601838 CAACACTTGT
37601848 GCCGAAACCACAAAA
1 GCCGAAACCACAAAA
*
37601863 GCCGAAACCTCAAAA
1 GCCGAAACCACAAAA
37601878 AATACATTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.33, G:0.13, T:0.03
Consensus pattern (15 bp):
GCCGAAACCACAAAA
Found at i:37604252 original size:17 final size:18
Alignment explanation
Indices: 37604215--37604253 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
37604205 GTGAAAAGGT
37604215 CAAA-AATAATAATAATA
1 CAAATAATAATAATAATA
37604232 -AAATAATAATAATAA-A
1 CAAATAATAATAATAATA
37604248 CAAATA
1 CAAATA
37604254 CACAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.72, C:0.05, G:0.00, T:0.23
Consensus pattern (18 bp):
CAAATAATAATAATAATA
Found at i:37604253 original size:14 final size:14
Alignment explanation
Indices: 37604217--37604247 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
37604207 GAAAAGGTCA
37604217 AAAATAATAATAAT
1 AAAATAATAATAAT
37604231 AAAATAATAATAAT
1 AAAATAATAATAAT
37604245 AAA
1 AAA
37604248 CAAATACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
AAAATAATAATAAT
Found at i:37607639 original size:24 final size:24
Alignment explanation
Indices: 37607603--37607652 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
37607593 GAGTTCAAGC
*
37607603 GATCCATGTCAGGAAGCTCAT-AA
1 GATCCATATCAGGAAGCTCATGAA
*
37607626 GATCCTATATCAGGACGCTCATGAA
1 GATCC-ATATCAGGAAGCTCATGAA
37607651 GA
1 GA
37607653 GCTACGTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 5 0.22
24 14 0.61
25 4 0.17
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (24 bp):
GATCCATATCAGGAAGCTCATGAA
Found at i:37615912 original size:46 final size:46
Alignment explanation
Indices: 37615859--37615972 Score: 138
Period size: 46 Copynumber: 2.5 Consensus size: 46
37615849 GAGGTCTTGT
* *
37615859 ATATGTTGCAGACTCGAGAATACAGGAATAGGTTCTAAGCTCCTAC
1 ATATGTTGCAAACTCGAGAATACAGGAATAGGTTCCAAGCTCCTAC
* * * * ** *
37615905 ATGTGTTGCAAACTTGAGAATCCATGTTTAGGTTCCAAGCTCCTGC
1 ATATGTTGCAAACTCGAGAATACAGGAATAGGTTCCAAGCTCCTAC
*
37615951 ATATGTTGCATACTCGAGAATA
1 ATATGTTGCAAACTCGAGAATA
37615973 TAAGCCCTGG
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (46 bp):
ATATGTTGCAAACTCGAGAATACAGGAATAGGTTCCAAGCTCCTAC
Found at i:37617089 original size:27 final size:27
Alignment explanation
Indices: 37617059--37617144 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
37617049 ATTACCAAAG
37617059 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
37617086 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
37617113 TACCCTCGA-TTGT-GAAATTACCGTTT
1 TACCCTCGATTTATAG-AATTACTGTTT
37617139 TACCCT
1 TACCCT
37617145 AAATTGTGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
25 1 0.02
26 18 0.35
27 33 0.63
ACGTcount: A:0.24, C:0.22, G:0.12, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:37617138 original size:26 final size:26
Alignment explanation
Indices: 37617075--37617160 Score: 102
Period size: 26 Copynumber: 3.3 Consensus size: 26
37617065 CGATTTATAG
* *
37617075 AATTACTGTTTTACCCTTGATT-TACA
1 AATTACTGTTTTACCCTAGATTGT-GA
*
37617101 GAATTACTGTTTTACCCTCGATTGTGA
1 -AATTACTGTTTTACCCTAGATTGTGA
* *
37617128 AATTACCGTTTTACCCTAAATTGTGA
1 AATTACTGTTTTACCCTAGATTGTGA
37617154 AATTACT
1 AATTACT
37617161 AAAATACCTC
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
26 29 0.56
27 22 0.42
28 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.42
Consensus pattern (26 bp):
AATTACTGTTTTACCCTAGATTGTGA
Found at i:37617211 original size:27 final size:27
Alignment explanation
Indices: 37617181--37617306 Score: 139
Period size: 27 Copynumber: 4.7 Consensus size: 27
37617171 TATAGGGTAG
37617181 AATTACCAAAATACCCTTAGTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* *
37617208 AATTACCAAAATACCAC-TGGTTTGTGA
1 AATTACCAAAATACC-CTTAGTTTGTAA
* * *
37617235 AATTACCGAAATACCCTCACTTTGTAA
1 AATTACCAAAATACCCTTAGTTTGTAA
* **
37617262 AATTACCAAAATACCCCT-GATTTACAA
1 AATTACCAAAATACCCTTAG-TTTGTAA
*
37617289 AATTACAAAAATACCCTT
1 AATTACCAAAATACCCTT
37617307 GACTTTCTAA
Statistics
Matches: 81, Mismatches: 15, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 79 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCTTAGTTTGTAA
Found at i:37617220 original size:54 final size:54
Alignment explanation
Indices: 37617148--37617282 Score: 148
Period size: 54 Copynumber: 2.5 Consensus size: 54
37617138 TTACCCTAAA
* * * * *
37617148 TTGTGAAATTACTAAAATACCTCT-ATAGGGT-AGAATTACCAAAATACCCTTAGT
1 TTGTAAAATTACCAAAATACCACTGAT-GGGTGA-AATTACCAAAATACCCTCACT
* ** *
37617202 TTGTAAAATTACCAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCACT
1 TTGTAAAATTACCAAAATACCACTGATGGGTGAAATTACCAAAATACCCTCACT
*
37617256 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCACTGAT
37617283 TTACAAAATT
Statistics
Matches: 68, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
54 66 0.97
55 2 0.03
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCACTGATGGGTGAAATTACCAAAATACCCTCACT
Found at i:37617292 original size:54 final size:54
Alignment explanation
Indices: 37617181--37617361 Score: 182
Period size: 54 Copynumber: 3.3 Consensus size: 54
37617171 TATAGGGTAG
* * ***
37617181 AATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCTCACTTTGTAAAATTACCAAAATACCACTGGTTTACAA
* * *
37617235 AATTACCGAAATACCCTCACTTTGTAAAATTACCAAAATACCCCTGATTTACAA
1 AATTACCAAAATACCCTCACTTTGTAAAATTACCAAAATACCACTGGTTTACAA
* * * *** *
37617289 AATTACAAAAATACCCTTGACTTTCTAAAAATTATGGAAATACCAATGGTTTACAA
1 AATTACCAAAATACCC-TCACTTTGT-AAAATTACCAAAATACCACTGGTTTACAA
* **
37617345 AATCACTGAAATACCCT
1 AATTACCAAAATACCCT
37617362 TGGTTTGTAG
Statistics
Matches: 104, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
54 60 0.58
55 8 0.08
56 36 0.35
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.29
Consensus pattern (54 bp):
AATTACCAAAATACCCTCACTTTGTAAAATTACCAAAATACCACTGGTTTACAA
Found at i:37617500 original size:27 final size:27
Alignment explanation
Indices: 37617429--37617490 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
37617419 TAGGTAAAAA
37617429 GACCGTAAAGCCCTTGTAGCGTAAAGT
1 GACCGTAAAGCCCTTGTAGCGTAAAGT
* *
37617456 GACTGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCCTTGTAGCGTAAAGT
37617483 GACCGTAA
1 GACCGTAA
37617491 TACCCCTGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (27 bp):
GACCGTAAAGCCCTTGTAGCGTAAAGT
Found at i:37617507 original size:27 final size:27
Alignment explanation
Indices: 37617429--37617500 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
37617419 TAGGTAAAAA
* *
37617429 GACCGTAAAGCCCTTGTAGCGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
* *
37617456 GACTGTAAAGCCCTTGTAGGGTAAAGT
1 GACCGTAAAGCCCCTGTAGGGTAAAGT
37617483 GACCGTAATA-CCCCTGTA
1 GACCGTAA-AGCCCCTGTA
37617501 TGTTAAAATG
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 39 0.98
28 1 0.03
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (27 bp):
GACCGTAAAGCCCCTGTAGGGTAAAGT
Found at i:37618325 original size:26 final size:26
Alignment explanation
Indices: 37618296--37618471 Score: 239
Period size: 26 Copynumber: 6.8 Consensus size: 26
37618286 GAGGAAGTGC
*
37618296 AAAATGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
37618322 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
37618348 AAAAGGGCTTATACCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
37618374 AAAAGGGCTTATGCCCCAGTTTATGG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
37618400 AAAAAGGGCTTATGCCCTAGTTTATCG
1 -AAAAGGGCTTATGCCCCAGTTTACCG
* *
37618427 AAAAGGGCTT-TGCCTCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
37618452 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
37618472 ATTAAAGAGG
Statistics
Matches: 133, Mismatches: 16, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
25 30 0.23
26 79 0.59
27 24 0.18
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:37618675 original size:42 final size:42
Alignment explanation
Indices: 37618616--37618707 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
37618606 TAGTCTCCCC
* ** * *
37618616 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGAGATTG
37618658 AAATGGGCTTGCATACATCCATTGACATTACATGTGAGATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGAGATTG
37618700 AAATGGGC
1 AAATGGGC
37618708 CTAAGGCCAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGAGATTG
Found at i:37618765 original size:31 final size:31
Alignment explanation
Indices: 37618730--37618806 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
37618720 TATTTACAGT
*
37618730 AAAGGCTTAGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
* *
37618761 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
*
37618792 AAAGGCCTCGGCCCA
1 AAAGGCTTCGGCCCA
37618807 GTAACTGTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:37621280 original size:49 final size:49
Alignment explanation
Indices: 37621208--37621401 Score: 194
Period size: 50 Copynumber: 3.9 Consensus size: 49
37621198 GCCAAAGCTA
* * *
37621208 TCTGGTACGCACAGTAGCCTGCACTTAGTACTACACATGCGACCAACAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* *
37621257 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTCACCA-
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-C-CAACAG
** * * * * *
37621307 TCTAATACACGTAGTAGTCTGCACTTAGTACTACACACGTGATC-ATAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
* * *
37621355 TTTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 ---TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC
37621402 TCACAATAGA
Statistics
Matches: 118, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 38 0.32
50 39 0.33
51 39 0.33
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (49 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG
Found at i:37635169 original size:39 final size:39
Alignment explanation
Indices: 37635120--37635199 Score: 133
Period size: 39 Copynumber: 2.1 Consensus size: 39
37635110 AATGGATGAT
*
37635120 TACTTATGGATTGTTTTGAGATATTATTGATAGGGATTA
1 TACTTATGGATTATTTTGAGATATTATTGATAGGGATTA
* *
37635159 TACTTATGGATTATTTTTAGATATTATTTATAGGGATTA
1 TACTTATGGATTATTTTGAGATATTATTGATAGGGATTA
37635198 TA
1 TA
37635200 AATTGAGAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.30, C:0.03, G:0.19, T:0.49
Consensus pattern (39 bp):
TACTTATGGATTATTTTGAGATATTATTGATAGGGATTA
Found at i:37635616 original size:13 final size:13
Alignment explanation
Indices: 37635598--37635634 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
37635588 GAAGCAATCG
37635598 CACACGGGCGTGT
1 CACACGGGCGTGT
37635611 CACACGGGCGTGT
1 CACACGGGCGTGT
*
37635624 CACACGAGCGT
1 CACACGGGCGT
37635635 ATCCCTGTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.19, C:0.32, G:0.35, T:0.14
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:37640475 original size:91 final size:91
Alignment explanation
Indices: 37640371--37640610 Score: 279
Period size: 91 Copynumber: 2.7 Consensus size: 91
37640361 GATCAGATGG
* * * *
37640371 TGGTACGTAGCGTAGCTAACGTACTTGTGGTACACTGCAATGCTGTAGTCCACTATACCAATATG
1 TGGTACATAGCGTAGCTAACGTACATGCGGTACACTGCAATGCAGTAGTCCACTATACCAATATG
37640436 TTGCAGAAAAACTATTGTTCAGTCAA
66 TTGCAGAAAAACTATTGTTCAGTCAA
* * *
37640462 TGGTACATAGCGTAGCTAATGTACATGCGGTACAGTGCAATGCAGTAGTCCGCTATACCAATATG
1 TGGTACATAGCGTAGCTAACGTACATGCGGTACACTGCAATGCAGTAGTCCACTATACCAATATG
* ****
37640527 TTGCAGTAAAACTGCCAATTCAGTCAA
66 TTGCAGAAAAACT-ATTGTTCAGTCAA
* * * * ** *
37640554 TGGTACGTAGC---GCTAACGTACATGCAGTATAGTGCAATGTGGTAATCCACTATACCA
1 TGGTACATAGCGTAGCTAACGTACATGCGGTACACTGCAATGCAGTAGTCCACTATACCA
37640611 TTATCAGTAA
Statistics
Matches: 128, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
89 39 0.30
91 70 0.55
92 19 0.15
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (91 bp):
TGGTACATAGCGTAGCTAACGTACATGCGGTACACTGCAATGCAGTAGTCCACTATACCAATATG
TTGCAGAAAAACTATTGTTCAGTCAA
Found at i:37640771 original size:18 final size:18
Alignment explanation
Indices: 37640748--37640785 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
37640738 CAAAATAGTT
*
37640748 TATGCATATGTATGTATG
1 TATGCAAATGTATGTATG
37640766 TATGCAAATGTATGTATG
1 TATGCAAATGTATGTATG
37640784 TA
1 TA
37640786 GATAAACCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.21, T:0.42
Consensus pattern (18 bp):
TATGCAAATGTATGTATG
Found at i:37661166 original size:17 final size:18
Alignment explanation
Indices: 37661144--37661178 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
37661134 TGGTTTATCT
37661144 ACATACATACAT-TTGCA
1 ACATACATACATATTGCA
37661161 ACATACATACATATTGCA
1 ACATACATACATATTGCA
37661179 TAAAACTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.71
18 5 0.29
ACGTcount: A:0.43, C:0.23, G:0.06, T:0.29
Consensus pattern (18 bp):
ACATACATACATATTGCA
Found at i:37661545 original size:89 final size:91
Alignment explanation
Indices: 37661366--37661559 Score: 241
Period size: 89 Copynumber: 2.1 Consensus size: 91
37661356 TGTACGTTAG
*** *
37661366 CGCTACGTACCATTGACTGAATTTGGCAGTTTTACTGCAACTATTGTGTATAGCGGACTACTGCA
1 CGCTACGTACCATTGACTGAA--CAACAGTTTTACTGCAACTATTGTGTATAGCGGACTACAGCA
* *
37661431 TGCCACTGTACCGCATGTACATTAGCTA
64 TGCCACTGTACCACAAGTACATTAGCTA
* * *
37661459 CGCTATGTACCATTGACTGAACAACAGTTTTTCTGCAAC-ATTG-GTATAGTGGACTACAGCATT
1 CGCTACGTACCATTGACTGAACAACAGTTTTACTGCAACTATTGTGTATAGCGGACTACAGCA-T
* *
37661522 G-CAGTGTACCACAAGTACGTTAGCTA
65 GCCACTGTACCACAAGTACATTAGCTA
37661548 CGCTACGTACCA
1 CGCTACGTACCA
37661560 CCATCTGATC
Statistics
Matches: 88, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
89 48 0.55
90 6 0.07
91 14 0.16
93 20 0.23
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (91 bp):
CGCTACGTACCATTGACTGAACAACAGTTTTACTGCAACTATTGTGTATAGCGGACTACAGCATG
CCACTGTACCACAAGTACATTAGCTA
Found at i:37674842 original size:17 final size:19
Alignment explanation
Indices: 37674816--37674864 Score: 75
Period size: 17 Copynumber: 2.7 Consensus size: 19
37674806 TCCCCTTTAT
37674816 AAACATTTTAAATTA-AAA
1 AAACATTTTAAATTAGAAA
*
37674834 AAA-ATTTTAAACTAGAAA
1 AAACATTTTAAATTAGAAA
37674852 AAACATTTTAAAT
1 AAACATTTTAAAT
37674865 CTTAATTAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 10 0.37
18 9 0.33
19 8 0.30
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (19 bp):
AAACATTTTAAATTAGAAA
Found at i:37677746 original size:31 final size:31
Alignment explanation
Indices: 37677711--37677772 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
37677701 GTAAACATAT
37677711 TTCAAATGGAAAAGAAGTACCTTTAGTTCAA
1 TTCAAATGGAAAAGAAGTACCTTTAGTTCAA
37677742 TTCAAATGGAAAAGAAGTACCTTTAGTTCAA
1 TTCAAATGGAAAAGAAGTACCTTTAGTTCAA
37677773 GTGTAGGTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (31 bp):
TTCAAATGGAAAAGAAGTACCTTTAGTTCAA
Found at i:37683216 original size:31 final size:31
Alignment explanation
Indices: 37683178--37683238 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
37683168 AGTTTCATCT
37683178 ATTCAATACCTATACAGTTCTTGTACATACG
1 ATTCAATACCTATACAGTTCTTGTACATACG
*
37683209 ATTCAATACCTATACGGTTCTTGTACATAC
1 ATTCAATACCTATACAGTTCTTGTACATAC
37683239 CTGTACCGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.31, C:0.23, G:0.10, T:0.36
Consensus pattern (31 bp):
ATTCAATACCTATACAGTTCTTGTACATACG
Found at i:37698558 original size:27 final size:27
Alignment explanation
Indices: 37698510--37698752 Score: 211
Period size: 27 Copynumber: 9.0 Consensus size: 27
37698500 AAACATACAT
* * * **
37698510 CACATAGGGGCAAAACATTCATCCTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
37698537 CACATAAGGGCAAAATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
** *
37698564 CTTATAAGGGCAAAATTGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
** *
37698591 CACATAAGGAAAAAACT-GTCATTTTAA
1 CACATAAGGGCAAAA-TAGTCATTTTAC
*
37698618 CACATAAGGGCAAAATAGTCATTTTTC
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
37698645 CACATAAGGACAAAAT-GTCATTTTAT
1 CACATAAGGGCAAAATAGTCATTTTAC
** ** * *
37698671 TGCATAAGGAAAAAATCGTCATTTTAA
1 CACATAAGGGCAAAATAGTCATTTTAC
* *
37698698 CACTTAAGGGCAAAACAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
** * * **
37698725 CTTATAGGGGTATTATAGTCATTTTAC
1 CACATAAGGGCAAAATAGTCATTTTAC
37698752 C
1 C
37698753 TTATGGAGGT
Statistics
Matches: 173, Mismatches: 40, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
26 22 0.13
27 150 0.87
28 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (27 bp):
CACATAAGGGCAAAATAGTCATTTTAC
Found at i:37698707 original size:80 final size:81
Alignment explanation
Indices: 37698537--37698725 Score: 274
Period size: 80 Copynumber: 2.3 Consensus size: 81
37698527 TTCATCCTAC
** *
37698537 CACATAAGGGCAAAATAGTCATTTTACCTTATAAGGGCAAAATTGTCATTTTACCACATAAGGAA
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGACAAAATTGTCATTTTACCACATAAGGAA
37698602 AAAACTGTCATTTTAA
66 AAAACTGTCATTTTAA
* ***
37698618 CACATAAGGGCAAAATAGTCATTTTTCCACATAAGGACAAAA-TGTCATTTTATTGCATAAGGAA
1 CACATAAGGGCAAAATAGTCATTTTACCACATAAGGACAAAATTGTCATTTTACCACATAAGGAA
37698682 AAAA-TCGTCATTTTAA
66 AAAACT-GTCATTTTAA
* *
37698698 CACTTAAGGGCAAAACAGTCATTTTACC
1 CACATAAGGGCAAAATAGTCATTTTACC
37698726 TTATAGGGGT
Statistics
Matches: 97, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
79 1 0.01
80 58 0.60
81 38 0.39
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (81 bp):
CACATAAGGGCAAAATAGTCATTTTACCACATAAGGACAAAATTGTCATTTTACCACATAAGGAA
AAAACTGTCATTTTAA
Found at i:37698753 original size:27 final size:26
Alignment explanation
Indices: 37698713--37699020 Score: 325
Period size: 27 Copynumber: 11.5 Consensus size: 26
37698703 AAGGGCAAAA
*
37698713 CAGTCATTTTACCTTATAGGGGTATTAT
1 CAGTCATTTTACCCTAT-GGGGTATT-T
*
37698741 -AGTCATTTTACCTTATGGAGGTATTT
1 CAGTCATTTTACCCTATGG-GGTATTT
*
37698767 -TGATCATTTTACCCTATGCGGGTATTT
1 CAG-TCATTTTACCCTATG-GGGTATTT
**
37698794 TGGTCATTTTACCCTATGCGGGTATTT
1 CAGTCATTTTACCCTATG-GGGTATTT
* *
37698821 CGGTCATTTTACCCTACGAGGGTATTT
1 CAGTCATTTTACCCTATG-GGGTATTT
*
37698848 CAGTCATTTTACCCTACGGGGGTATTT
1 CAGTCATTTTACCCTA-TGGGGTATTT
** *
37698875 TGGTAATTTTACCCTATGGGGTATTT
1 CAGTCATTTTACCCTATGGGGTATTT
*
37698901 CAATCATTTTA-CCTATGGGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTT
*
37698927 CAGTTATTTTACCCTATGTGGGTATTT
1 CAGTCATTTTACCCTATG-GGGTATTT
* *
37698954 TATTCATTTTACCCTATGGGGGTATTT
1 CAGTCATTTTACCCTAT-GGGGTATTT
*
37698981 CGGTCATTTTACCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATG-GGGTATTT
* *
37699008 CGGTCACTTTACC
1 CAGTCATTTTACC
37699021 TTCCGGCCCA
Statistics
Matches: 245, Mismatches: 25, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
25 5 0.02
26 40 0.16
27 196 0.80
28 4 0.02
ACGTcount: A:0.19, C:0.18, G:0.20, T:0.43
Consensus pattern (26 bp):
CAGTCATTTTACCCTATGGGGTATTT
Found at i:37698800 original size:81 final size:81
Alignment explanation
Indices: 37698715--37699020 Score: 374
Period size: 81 Copynumber: 3.8 Consensus size: 81
37698705 GGGCAAAACA
* * *
37698715 GTCATTTTACCTTATAGGGGTATTAT-AGTCATTTTACCTTATGGA-GGTATTT-TGATCATTTT
1 GTCATTTTACCCTAT-GGGGTATT-TCAGTCATTTTACCCTATGGAGGGTATTTCAG-TCATTTT
37698777 ACCCTATGCGGGTATTTTG
63 ACCCTATGCGGGTATTTTG
* *
37698796 GTCATTTTACCCTATGCGGGTATTTCGGTCATTTTACCCTA-CGAGGGTATTTCAGTCATTTTAC
1 GTCATTTTACCCTATG-GGGTATTTCAGTCATTTTACCCTATGGAGGGTATTTCAGTCATTTTAC
* *
37698860 CCTACGGGGGTATTTTG
65 CCTATGCGGGTATTTTG
* * *
37698877 GTAATTTTACCCTATGGGGTATTTCAATCATTTTA-CCTATGG-GGGTATTTCAGTTATTTTACC
1 GTCATTTTACCCTATGGGGTATTTCAGTCATTTTACCCTATGGAGGGTATTTCAGTCATTTTACC
* *
37698940 CTATGTGGGTATTTTA
66 CTATGCGGGTATTTTG
* * * *
37698956 TTCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GAGGGTATTTCGGTCACTTTAC
1 GTCATTTTACCCTAT-GGGGTATTTCAGTCATTTTACCCTATGGAGGGTATTTCAGTCATTTTAC
37699020 C
65 C
37699021 TTCCGGCCCA
Statistics
Matches: 195, Mismatches: 22, Indels: 16
0.84 0.09 0.07
Matches are distributed among these distances:
79 50 0.26
80 41 0.21
81 103 0.53
82 1 0.01
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.43
Consensus pattern (81 bp):
GTCATTTTACCCTATGGGGTATTTCAGTCATTTTACCCTATGGAGGGTATTTCAGTCATTTTACC
CTATGCGGGTATTTTG
Found at i:37699019 original size:54 final size:54
Alignment explanation
Indices: 37698715--37699020 Score: 377
Period size: 54 Copynumber: 5.7 Consensus size: 54
37698705 GGGCAAAACA
* * * *
37698715 GTCATTTTACCTTAT-AGGGGTATTAT-AGTCATTTTACCTTATGGAGGTATTTTG
1 GTCATTTTACCCTATGA-GGGTATT-TCAGTCATTTTACCCTATGGGGGTATTTCG
* * ** *
37698769 ATCATTTTACCCTATGCGGGTATTTTGGTCATTTTACCCTATGCGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* * *
37698823 GTCATTTTACCCTACGAGGGTATTTCAGTCATTTTACCCTACGGGGGTATTTTG
1 GTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* * *
37698877 GTAATTTTACCCTATG-GGGTATTTCAATCATTTTA-CCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* * * *
37698929 GTTATTTTACCCTATGTGGGTATTTTATTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
* *
37698983 GTCATTTTACCCTATGAGGGTATTTCGGTCACTTTACC
1 GTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACC
37699021 TTCCGGCCCA
Statistics
Matches: 216, Mismatches: 32, Indels: 8
0.84 0.12 0.03
Matches are distributed among these distances:
52 29 0.13
53 36 0.17
54 151 0.70
ACGTcount: A:0.19, C:0.17, G:0.20, T:0.43
Consensus pattern (54 bp):
GTCATTTTACCCTATGAGGGTATTTCAGTCATTTTACCCTATGGGGGTATTTCG
Found at i:37706601 original size:12 final size:12
Alignment explanation
Indices: 37706584--37706611 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
37706574 CTTACGATAT
37706584 CCATAATACCAA
1 CCATAATACCAA
37706596 CCATAATACCAA
1 CCATAATACCAA
37706608 CCAT
1 CCAT
37706612 GTACTCATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.46, C:0.36, G:0.00, T:0.18
Consensus pattern (12 bp):
CCATAATACCAA
Found at i:37716640 original size:45 final size:45
Alignment explanation
Indices: 37716483--37716655 Score: 192
Period size: 45 Copynumber: 3.8 Consensus size: 45
37716473 GTTTGGGCAT
* * *
37716483 CCGAACTCGTTGAATTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCGAACGC
* *
37716529 CCGAACTCGTTGAGTTGAGTCCGAGTTCGA--GA-GATG-TAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGATGCGAAC---GC
*
37716574 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAACGC
*
37716621 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
37716656 GGCGGGTTAC
Statistics
Matches: 109, Mismatches: 8, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 37 0.34
46 28 0.26
47 30 0.28
48 1 0.01
49 4 0.04
50 3 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (45 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCGAACGC
Found at i:37719705 original size:40 final size:40
Alignment explanation
Indices: 37719650--37719731 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
37719640 TCTTTGAAGT
37719650 AAGTCAAATTCATGAAATACCTTGGTTTGCTGATTATGCA
1 AAGTCAAATTCATGAAATACCTTGGTTTGCTGATTATGCA
*
37719690 AAGTCAAATTCATGAAATGCCTTGGTTTGCTGATTATGCA
1 AAGTCAAATTCATGAAATACCTTGGTTTGCTGATTATGCA
37719730 AA
1 AA
37719732 TTATTTAGCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (40 bp):
AAGTCAAATTCATGAAATACCTTGGTTTGCTGATTATGCA
Found at i:37720504 original size:19 final size:19
Alignment explanation
Indices: 37720477--37720516 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
37720467 ATGGGGGGAA
*
37720477 ATTTTTTTTCTTAG-CATTT
1 ATTTATTTT-TTAGCCATTT
37720496 ATTTATTTTTTAGCCATTT
1 ATTTATTTTTTAGCCATTT
37720515 AT
1 AT
37720517 ATTTCTTTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.20, C:0.10, G:0.05, T:0.65
Consensus pattern (19 bp):
ATTTATTTTTTAGCCATTT
Found at i:37722008 original size:46 final size:45
Alignment explanation
Indices: 37721958--37722130 Score: 190
Period size: 46 Copynumber: 3.8 Consensus size: 45
37721948 TGGTTGAGCA
37721958 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAAT
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAAT
* * * *
37722003 GTCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACT-AGGCAT
1 -TCTGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TGA-GAAT
* *
37722052 TC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC
1 TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAAT
**
37722096 TCCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCTGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
37722131 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
44 5 0.05
45 4 0.04
46 60 0.56
47 29 0.27
48 5 0.05
49 4 0.04
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (45 bp):
TCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAGAAT
Found at i:37730982 original size:54 final size:54
Alignment explanation
Indices: 37730900--37731010 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
37730890 CAGTCTGACC
37730900 CTAAGCTAGCTAGCTCAGTATTTACTTACCCCAAGCTTTAAATCAAAGACAGCT
1 CTAAGCTAGCTAGCTCAGTATTTACTTACCCCAAGCTTTAAATCAAAGACAGCT
37730954 CTAAGCTAGCTAGCTCAGTATTTACTTACCCCAAGCTTTAAATCAAAGACAGCT
1 CTAAGCTAGCTAGCTCAGTATTTACTTACCCCAAGCTTTAAATCAAAGACAGCT
37731008 CTA
1 CTA
37731011 GTTCTATCTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (54 bp):
CTAAGCTAGCTAGCTCAGTATTTACTTACCCCAAGCTTTAAATCAAAGACAGCT
Found at i:37750156 original size:45 final size:46
Alignment explanation
Indices: 37750088--37750307 Score: 269
Period size: 45 Copynumber: 5.0 Consensus size: 46
37750078 TATCGTACAG
*
37750088 TACTATTCGGGCCTTT-AAGCCTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAAGCCTAGCAGGCTATAATGCCGGTGAGA
*
37750133 TACTATTCGGGCCTTTGAA-CCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
37750178 TACTATTTGGGCCTTCG-AGCCTAGCAGGCTACAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
37750223 TACTATTTGGGCC-TTCAAGCCTAGCAGGCTATAATGCCGGTAAAA
1 TACTATTCGGGCCTTTGAAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
37750268 TGA-TA-TCGGG-CTTCG-AGCCTAGCAGGCGA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAAGCCTAGCAGGCTATAATGCCGGTGA
37750308 ATGAATTCAG
Statistics
Matches: 154, Mismatches: 16, Indels: 13
0.84 0.09 0.07
Matches are distributed among these distances:
42 10 0.06
43 14 0.09
44 7 0.05
45 120 0.78
46 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (46 bp):
TACTATTCGGGCCTTTGAAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:37755409 original size:37 final size:37
Alignment explanation
Indices: 37755303--37755411 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
37755293 AGCTCAGACG
* * *
37755303 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
37755340 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
37755377 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
37755412 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:37755683 original size:48 final size:48
Alignment explanation
Indices: 37755557--37755741 Score: 282
Period size: 48 Copynumber: 3.8 Consensus size: 48
37755547 GCACATCGCC
*
37755557 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
37755607 TATATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
37755655 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
37755703 TACATTTTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
37755742 TGCATGTTCA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
48 81 0.65
49 2 0.02
50 41 0.33
ACGTcount: A:0.30, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:37755746 original size:98 final size:98
Alignment explanation
Indices: 37755557--37755740 Score: 302
Period size: 98 Copynumber: 1.9 Consensus size: 98
37755547 GCACATCGCC
*
37755557 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
37755622 GACCATTCAGCTTTACCACATATGCATATCTCA
66 GACCATTCAGCTTTACCACATATGCATATCTCA
* *
37755655 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCATACAT-T-TTTCACATT
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
*
37755718 -AGCCATTCGGCTTTACCACATAT
66 GA-CCATTCAGCTTTACCACATAT
37755741 ATGCATGTTC
Statistics
Matches: 81, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
95 1 0.01
96 29 0.36
97 1 0.01
98 50 0.62
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (98 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATTTCACATT
GACCATTCAGCTTTACCACATATGCATATCTCA
Found at i:37755790 original size:47 final size:47
Alignment explanation
Indices: 37755663--37755951 Score: 339
Period size: 47 Copynumber: 6.1 Consensus size: 47
37755653 CATACATATT
* * * * **
37755663 TCACATTAGCCATTCGGCTTTACCACATATA--CATTTCTCATACATTTT
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGT-TC--ACATTCA
* * * *
37755711 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
37755758 CCACATTGGCCATTCGGCCTTATCACACATATGCGTGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
37755805 TCACATTGGCCATTCGGCCTTATCACACATATGCGTGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
37755852 TCACATTGGCCATTCGGCCTTATCACATATATGCATATTCAAATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
37755899 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
37755946 TCACAT
1 TCACAT
37755952 AAAATCCTAA
Statistics
Matches: 218, Mismatches: 21, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
47 181 0.83
48 31 0.14
49 2 0.01
50 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:37755952 original size:25 final size:25
Alignment explanation
Indices: 37755873--37755952 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
37755863 ATTCGGCCTT
* *
37755873 ATCACATATATGCATATTCAAATTC
1 ATCACATATATGCACATTCACATTC
* * *
37755898 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
37755920 ATCTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
37755945 ATCACATA
1 ATCACATA
37755953 AAATCCTAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 10
0.67 0.17 0.17
Matches are distributed among these distances:
22 10 0.25
23 5 0.12
24 6 0.15
25 19 0.47
ACGTcount: A:0.33, C:0.26, G:0.07, T:0.34
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:37759634 original size:283 final size:284
Alignment explanation
Indices: 37759126--37759694 Score: 1122
Period size: 283 Copynumber: 2.0 Consensus size: 284
37759116 ATTTTACCCC
37759126 TAAAATTTTGCATATTTACACTTTTGCCCCAAAGCTCAAAAATTAATTTTTTTTCCAATATTATT
1 TAAAATTTTGCATATTTACACTTTTGCCCCAAAGCTCAAAAATTAATTTTTTTTCCAATATTATT
37759191 ATTTTTTATGACATGATGATCATTTTCCCCTTCTATGGAAACATCAAATTCTCACTCTAACATGT
66 ATTTTTTATGACATGATGATCATTTTCCCCTTCTATGGAAACATCAAATTCTCACTCTAACATGT
37759256 AGTTATAAACATTAGGTATTTTTATCGATTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTA
131 AGTTATAAACATTAGGTATTTTTATCGATTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTA
37759321 GCAAAAGTTGTTTAACACAATTTAAAGCTTCATATTCTACCATAAAATATCAAAATAAACACATT
196 GCAAAAGTTGTTTAACACAATTTAAAGCTTCATATTCTACCATAAAATATCAAAATAAACACATT
37759386 TCACCTATTGGTATTTTTTCCAAA
261 TCACCTATTGGTATTTTTTCCAAA
37759410 TAAAATTTTGCATATTTACACTTTTGCCCCAAAGCTCAAAAATTAATTTTTTTTCCAATATTATT
1 TAAAATTTTGCATATTTACACTTTTGCCCCAAAGCTCAAAAATTAATTTTTTTTCCAATATTATT
37759475 A-TTTTTATGACATGATGATCATTTTCCCCTTCTATGGAAACATCAAATTCTCACTCTAACATGT
66 ATTTTTTATGACATGATGATCATTTTCCCCTTCTATGGAAACATCAAATTCTCACTCTAACATGT
*
37759539 AGTTATAAACATTAGGTATTTTTATCGATTATGTCATTTTACTCGTTTTCACGTAAAATTGTTTA
131 AGTTATAAACATTAGGTATTTTTATCGATTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTA
37759604 GCAAAAGTTGTTTAACACAATTTAAAGCTTCATATTCTACCATAAAATATCAAAATAAACACATT
196 GCAAAAGTTGTTTAACACAATTTAAAGCTTCATATTCTACCATAAAATATCAAAATAAACACATT
37759669 TCACCTATTGGTATTTTTTCCAAA
261 TCACCTATTGGTATTTTTTCCAAA
37759693 TA
1 TA
37759695 GAAACCCTAG
Statistics
Matches: 284, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
283 218 0.77
284 66 0.23
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (284 bp):
TAAAATTTTGCATATTTACACTTTTGCCCCAAAGCTCAAAAATTAATTTTTTTTCCAATATTATT
ATTTTTTATGACATGATGATCATTTTCCCCTTCTATGGAAACATCAAATTCTCACTCTAACATGT
AGTTATAAACATTAGGTATTTTTATCGATTATGTCATTTTACTCGTTTTCACGTAAAATCGTTTA
GCAAAAGTTGTTTAACACAATTTAAAGCTTCATATTCTACCATAAAATATCAAAATAAACACATT
TCACCTATTGGTATTTTTTCCAAA
Found at i:37781182 original size:43 final size:43
Alignment explanation
Indices: 37781094--37781191 Score: 119
Period size: 43 Copynumber: 2.3 Consensus size: 43
37781084 CGAGATGAGG
* * *
37781094 TTATATGTAAGACCATGTCTGGGACATTGGCATTGTATTGTGA
1 TTATGTGTAAGACCATGTCTGGGACATTGGCATTGTAATGCGA
*
37781137 TTATGTGTAGGACCATGTCTGGGACATTGGCATCAT-TAAT-CGA
1 TTATGTGTAAGACCATGTCTGGGACATTGGCAT--TGTAATGCGA
*
37781180 TTACGTGTAAGA
1 TTATGTGTAAGA
37781192 TTCTGTCTAG
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
43 43 0.91
44 3 0.06
45 1 0.02
ACGTcount: A:0.27, C:0.13, G:0.26, T:0.35
Consensus pattern (43 bp):
TTATGTGTAAGACCATGTCTGGGACATTGGCATTGTAATGCGA
Found at i:37789000 original size:43 final size:43
Alignment explanation
Indices: 37788864--37789020 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
37788854 ATGAGGTTAT
* * *
37788864 ATGTAAAACCATGTCTGGGACATTGGCATTG-TATTGTGATTAT
1 ATGTAAGACCATGTCTGGGACATTGGCATCGATA-TGTGATTAC
* * *
37788907 GTGTAGGACCATGTCTGGGACATTGGCATC-ATTAAT-CGATTAC
1 ATGTAAGACCATGTCTGGGACATTGGCATCGA-T-ATGTGATTAC
* * * * *
37788950 GTCTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAAC
1 ATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
* *
37788993 ATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTAAGACCATGTCTGGGACATTGGCAT
37789021 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 11
0.77 0.14 0.09
Matches are distributed among these distances:
42 8 0.09
43 80 0.87
44 3 0.03
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (43 bp):
ATGTAAGACCATGTCTGGGACATTGGCATCGATATGTGATTAC
Found at i:37794359 original size:22 final size:20
Alignment explanation
Indices: 37794329--37794369 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
37794319 CACATTTTTC
37794329 ATTTAATCACACTTTTACACAT
1 ATTTAATCAC-CTTTT-CACAT
*
37794351 ATTTTATCACCTTTTCACA
1 ATTTAATCACCTTTTCACA
37794370 AATTGGTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 5 0.28
22 9 0.50
ACGTcount: A:0.32, C:0.24, G:0.00, T:0.44
Consensus pattern (20 bp):
ATTTAATCACCTTTTCACAT
Found at i:37795975 original size:31 final size:30
Alignment explanation
Indices: 37795931--37795988 Score: 80
Period size: 31 Copynumber: 1.9 Consensus size: 30
37795921 AAGTCACCAG
* *
37795931 AATAGATATTGTGGCTAGGCCACCAGAACA
1 AATAGATATTGTGGCGAAGCCACCAGAACA
*
37795961 AATATATATATGTGGCGAAGCCACCAGA
1 AATAGATAT-TGTGGCGAAGCCACCAGA
37795989 TTGCAGCGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 8 0.33
31 16 0.67
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (30 bp):
AATAGATATTGTGGCGAAGCCACCAGAACA
Found at i:37796770 original size:54 final size:54
Alignment explanation
Indices: 37796688--37796894 Score: 283
Period size: 54 Copynumber: 3.9 Consensus size: 54
37796678 ATAGTCATTT
**
37796688 TACCCT-CTAGGGGTAAATCGGTAATTCTACCTTACAGGAGTATTTCGGTAATTC
1 TACCCTAC-AGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCGGTAATTC
* **
37796742 TACCCTACAGGGGTATTTCAGTAATTCTACCTTACAGGAGTATTTTAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCGGTAATTC
* * * *
37796796 CACCCTACAGGGGTATTTCGGAAATTCTACCTTACAGG-GTATTTTGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCGGTAATTC
* * *
37796849 TACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTC
37796895 AATAATTTTG
Statistics
Matches: 136, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
53 47 0.35
54 88 0.65
55 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (54 bp):
TACCCTACAGGGGTATTTCGGTAATTCTACCTTACAGGAGTATTTCGGTAATTC
Found at i:37796901 original size:27 final size:27
Alignment explanation
Indices: 37796688--37796894 Score: 256
Period size: 27 Copynumber: 7.7 Consensus size: 27
37796678 ATAGTCATTT
**
37796688 TACCCT-CTAGGGGTAAATCGGTAATTC
1 TACCCTAC-AGGGGTATTTCGGTAATTC
* *
37796715 TACCTTACAGGAGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
37796742 TACCCTACAGGGGTATTTCAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* * **
37796769 TACCTTACAGGAGTATTTTAGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* *
37796796 CACCCTACAGGGGTATTTCGGAAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
* * *
37796823 TACCTTACA-GGGTATTTTGGTATTTC
1 TACCCTACAGGGGTATTTCGGTAATTC
*
37796849 TACCCTACAAGGGTATTTCGGTAATTC
1 TACCCTACAGGGGTATTTCGGTAATTC
37796876 TACCCTACAGGGGTATTTC
1 TACCCTACAGGGGTATTTC
37796895 AATAATTTTG
Statistics
Matches: 153, Mismatches: 25, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 22 0.14
27 130 0.85
28 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
TACCCTACAGGGGTATTTCGGTAATTC
Found at i:37796916 original size:27 final size:27
Alignment explanation
Indices: 37796886--37797090 Score: 130
Period size: 27 Copynumber: 7.6 Consensus size: 27
37796876 TACCCTACAG
* **
37796886 GGGTATTTCAATAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*** * * * *
37796913 GGGTAAAACGGTAATTCTATAAATCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
37796940 GGGTACTTT-GGTAATTTTACAAGTTGA
1 GGGTA-TTTCAGTAATTTTACAAATCGA
* *
37796967 GGGTATTTTAGTAATCTTACAAATCGA
1 GGGTATTTCAGTAATTTTACAAATCGA
*
37796994 GGGTATTTCAGTAATTTTGCAAA-CTGA
1 GGGTATTTCAGTAATTTTACAAATC-GA
** * * *
37797021 GGGTATTTGGGTAATTTTATAAACCGG
1 GGGTATTTCAGTAATTTTACAAATCGA
* * *
37797048 GGGTACTTT-GGTAATTTTACAACT-GG
1 GGGTA-TTTCAGTAATTTTACAAATCGA
*
37797074 GGGTATTTCATTAATTT
1 GGGTATTTCAGTAATTT
37797091 GGTAAACTAA
Statistics
Matches: 139, Mismatches: 33, Indels: 13
0.75 0.18 0.07
Matches are distributed among these distances:
25 3 0.02
26 17 0.12
27 115 0.83
28 4 0.03
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTACAAATCGA
Found at i:37796931 original size:107 final size:108
Alignment explanation
Indices: 37796696--37796901 Score: 288
Period size: 107 Copynumber: 1.9 Consensus size: 108
37796686 TTTACCCTCT
*
37796696 AGGGGTAAATCGGTAATTCTACCTTACAGGAGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
1 AGGGGTAAATCGGTAATTCTACCTTACAGGAGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* * * **
37796761 AGTAATTCTACCTTACAGGAGTATTTTAGTAATTCCACCCTAC
66 AGTAATTCTACCCTACAGGAGTATTTCAATAATTCCACAATAC
** * * *
37796804 AGGGGTATTTCGGAAATTCTACCTTACAGG-GTATTTTGGTATTTCTACCCTACAAGGGTATTTC
1 AGGGGTAAATCGGTAATTCTACCTTACAGGAGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
* *
37796868 GGTAATTCTACCCTACAGGGGTATTTCAATAATT
66 AGTAATTCTACCCTACAGGAGTATTTCAATAATT
37796902 TTGTAAATCG
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
107 60 0.69
108 27 0.31
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (108 bp):
AGGGGTAAATCGGTAATTCTACCTTACAGGAGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
AGTAATTCTACCCTACAGGAGTATTTCAATAATTCCACAATAC
Found at i:37796969 original size:54 final size:54
Alignment explanation
Indices: 37796921--37797082 Score: 177
Period size: 54 Copynumber: 3.0 Consensus size: 54
37796911 GAGGGTAAAA
**
37796921 CGGTAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAAGTTGAGGGTATTT
1 CGGTAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAAACTGAGGGTATTT
** * * * *
37796975 TAGTAA-TCTTACAAATCGAGGGTA-TTTCAGTAATTTTGCAAACTGAGGGTATTT
1 CGGTAATTC-TATAAATCGGGGGTACTTT-GGTAATTTTACAAACTGAGGGTATTT
* * * *
37797029 GGGTAATTTTATAAACCGGGGGTACTTTGGTAATTTTAC-AACTGGGGGTATTT
1 CGGTAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAAACTGAGGGTATTT
37797082 C
1 C
37797083 ATTAATTTGG
Statistics
Matches: 86, Mismatches: 18, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
53 18 0.21
54 64 0.74
55 4 0.05
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (54 bp):
CGGTAATTCTATAAATCGGGGGTACTTTGGTAATTTTACAAACTGAGGGTATTT
Found at i:37803913 original size:27 final size:26
Alignment explanation
Indices: 37803855--37803967 Score: 145
Period size: 27 Copynumber: 4.2 Consensus size: 26
37803845 AGGAAGCGTC
*
37803855 CTGGTGGCTATGCCACAAATTATCTGTT
1 CTGGTGGCTCTGCCAC--ATTATCTGTT
37803883 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGTT
*
37803910 CTGGTGGCTCTGCCACGATTATCCGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTGT-T
* *
37803938 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGTT
37803964 CTGG
1 CTGG
37803968 CAGCCATGCT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
26 7 0.09
27 38 0.49
28 32 0.42
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGTT
Found at i:37803941 original size:55 final size:54
Alignment explanation
Indices: 37803855--37803967 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
37803845 AGGAAGCGTC
* *
37803855 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAAATTATCCGTTCTGGTGACTCTGCCACAT-TATCTGTT
* * *
37803910 CTGGTGGCTCTGCCAC-GATTATCCGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAAATTATCCGT-TCTGGTGACTCTGCCACATTATCTGTT
37803964 CTGG
1 CTGG
37803968 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 20 0.38
55 32 0.62
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAAATTATCCGTTCTGGTGACTCTGCCACATTATCTGTT
Found at i:37808759 original size:22 final size:22
Alignment explanation
Indices: 37808728--37808771 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
37808718 AATACAGGTA
*
37808728 TGTACAAAAATTGAGTATGCAT
1 TGTACAAAAACTGAGTATGCAT
*
37808750 TGTACGAAAACTGAGTATGCAT
1 TGTACAAAAACTGAGTATGCAT
37808772 CGAATATATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (22 bp):
TGTACAAAAACTGAGTATGCAT
Found at i:37811962 original size:12 final size:13
Alignment explanation
Indices: 37811945--37811973 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
37811935 AAGAACTTGT
37811945 TTTATATAA-TTA
1 TTTATATAATTTA
37811957 TTTATATAATTTA
1 TTTATATAATTTA
37811970 TTTA
1 TTTA
37811974 AGTTATACAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTATATAATTTA
Found at i:37819546 original size:20 final size:19
Alignment explanation
Indices: 37819500--37819556 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
37819490 AAATTATAAA
37819500 TAAT-AAATTTTATAAAAT
1 TAATAAAATTTTATAAAAT
*
37819518 TAATTAAATTTTAATAAAATT
1 TAATAAAATTTT-ATAAAA-T
37819539 TAA-AAAA-TTTA-AAAAT
1 TAATAAAATTTTATAAAAT
37819555 TA
1 TA
37819557 TTATAAATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
16 3 0.09
17 4 0.11
18 5 0.14
19 10 0.29
20 9 0.26
21 4 0.11
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TAATAAAATTTTATAAAAT
Found at i:37819596 original size:15 final size:15
Alignment explanation
Indices: 37819576--37819605 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37819566 AGAATTTTTT
37819576 ATAAAAATAGTAAAA
1 ATAAAAATAGTAAAA
*
37819591 ATAAAAATTGTAAAA
1 ATAAAAATAGTAAAA
37819606 TTTTATAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (15 bp):
ATAAAAATAGTAAAA
Found at i:37821166 original size:20 final size:20
Alignment explanation
Indices: 37821141--37821178 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37821131 TGATAAATGA
* *
37821141 ATACATGTGTATTAATAAAT
1 ATACATATGTATAAATAAAT
37821161 ATACATATGTATAAATAA
1 ATACATATGTATAAATAA
37821179 TAAATATTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (20 bp):
ATACATATGTATAAATAAAT
Found at i:37821261 original size:22 final size:21
Alignment explanation
Indices: 37821228--37821268 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
37821218 AAATGAAATA
*
37821228 AAAGAAATGAAAAAGAGAAAC
1 AAAGAAACGAAAAAGAGAAAC
*
37821249 AAAGCAAACGAAACAGAGAA
1 AAAG-AAACGAAAAAGAGAA
37821269 GAACAGGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.68, C:0.10, G:0.20, T:0.02
Consensus pattern (21 bp):
AAAGAAACGAAAAAGAGAAAC
Found at i:37831670 original size:69 final size:69
Alignment explanation
Indices: 37831584--37831721 Score: 204
Period size: 69 Copynumber: 2.0 Consensus size: 69
37831574 ACCAGATTGT
* * **
37831584 TAGGTCACATGTGTAGTACTAAGTGTAGGATACTATGCGTACCCGATAGTTTCGATCACGTGTGT
1 TAGGTCACATGTGTAGTACCAAGTGCAGGATACTATGCGTACCCGATAACTTCGATCACGTGTGT
37831649 AGTA
66 AGTA
* * * *
37831653 TAGGTCACATGTGTAGTACCATGTGCAGGCTACTATGCGTACCTGTTAACTTCGATCACGTGTGT
1 TAGGTCACATGTGTAGTACCAAGTGCAGGATACTATGCGTACCCGATAACTTCGATCACGTGTGT
37831718 AGTA
66 AGTA
37831722 CTAAGTGCAG
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (69 bp):
TAGGTCACATGTGTAGTACCAAGTGCAGGATACTATGCGTACCCGATAACTTCGATCACGTGTGT
AGTA
Found at i:37831773 original size:50 final size:50
Alignment explanation
Indices: 37831708--37831838 Score: 199
Period size: 50 Copynumber: 2.6 Consensus size: 50
37831698 TTAACTTCGA
*
37831708 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAATGGATAAG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATGGATAAG
* * *
37831758 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTGATAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATGGATAAG
* * *
37831808 TCGCATGTGTAGTACTAAGTGTAGGCTACTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA
37831839 TGCGTACCAG
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAAATGGATAAG
Found at i:37831846 original size:50 final size:50
Alignment explanation
Indices: 37831652--37831849 Score: 191
Period size: 50 Copynumber: 3.9 Consensus size: 50
37831642 CGTGTGTAGT
* * ** * *
37831652 ATAGGTCACATGTGTAGTACCATGTGCAGGCTACTATGCGTACCTG-TTA
1 ATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATTG
* * * * * * *
37831701 ACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAAATGG
1 A--TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATTG
* * *
37831753 ATAAGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATTG
1 ATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATTG
* * **
37831803 ATAGGTCGCATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGA
1 ATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGA
37831850 GAGCTTAGGT
Statistics
Matches: 120, Mismatches: 26, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
49 1 0.01
50 83 0.69
51 34 0.28
52 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (50 bp):
ATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACACGTACCAGATTG
Found at i:37832070 original size:16 final size:16
Alignment explanation
Indices: 37832049--37832080 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37832039 AGAATGGAGT
37832049 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
37832065 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
37832081 TAAAACAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:37833260 original size:42 final size:42
Alignment explanation
Indices: 37833105--37833344 Score: 302
Period size: 43 Copynumber: 5.6 Consensus size: 42
37833095 TTATGTGAAA
* ** *
37833105 AAACGCCTCTAAAGAACATGACCTTTATTGGCGCTTTCCCGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCC-AC
* * *
37833148 AAACGCCACTAAAGAACATGACCTTTAGCGGCGCTTTCCTCAA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCC-CAC
*
37833191 AAACGCCGCTAAAGAACATGACTTTTAGCGGCACTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCCAC
* *
37833233 AAACGCCGCTAAAGAGCATAACCTTTAGCGGCACTTTCCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTT-CCCAC
* * *
37833276 AAATGCCGC-AAAGAGCATGACCTTTAGCGACACTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCAC-TTTCCCAC
* *
37833318 AAACGCTGCTAAAGAATATGACCTTTA
1 AAACGCCGCTAAAGAACATGACCTTTA
37833345 ATAAAAAAAA
Statistics
Matches: 175, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
42 70 0.40
43 104 0.59
44 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCCAC
Found at i:37833270 original size:85 final size:85
Alignment explanation
Indices: 37833103--37833344 Score: 306
Period size: 85 Copynumber: 2.8 Consensus size: 85
37833093 GTTTATGTGA
* ** * * *
37833103 AAAAACGCCTCTAAAGAACATGACCTTTATTGGCGCTTTCCCGACAAACGCCACTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCC-ACAAACGCCGCTAAAGAACATA
* *
37833168 ACCTTTAGCGGCGCTTTCCTC
65 ACCTTTAGCGGCACTTTCCCC
* *
37833189 AAAAACGCCGCTAAAGAACATGACTTTTAGCGGCACTTTCCCACAAACGCCGCTAAAGAGCATAA
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCCACAAACGCCGCTAAAGAACATAA
37833254 CCTTTAGCGGCACTTTCCCC
66 CCTTTAGCGGCACTTTCCCC
* * * * * * *
37833274 ACAAATGCCGC-AAAGAGCATGACCTTTAGCGACACTTTTCCCACAAACGCTGCTAAAGAATATG
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCAC-TTTCCCACAAACGCCGCTAAAGAACATA
37833338 ACCTTTA
65 ACCTTTA
37833345 ATAAAAAAAA
Statistics
Matches: 136, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
84 21 0.15
85 78 0.57
86 37 0.27
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.22
Consensus pattern (85 bp):
AAAAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTTCCCACAAACGCCGCTAAAGAACATAA
CCTTTAGCGGCACTTTCCCC
Found at i:37833363 original size:17 final size:18
Alignment explanation
Indices: 37833341--37833377 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
37833331 GAATATGACC
37833341 TTTAA-TAAAAAAAATAT
1 TTTAATTAAAAAAAATAT
*
37833358 TTTAATTAAAATAAATAT
1 TTTAATTAAAAAAAATAT
37833376 TT
1 TT
37833378 ATTTCTATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TTTAATTAAAAAAAATAT
Found at i:37838706 original size:7 final size:7
Alignment explanation
Indices: 37838670--37838776 Score: 51
Period size: 7 Copynumber: 15.1 Consensus size: 7
37838660 ACTTATTACT
37838670 CTAAACC
1 CTAAACC
*
37838677 TTAAACTC
1 CTAAAC-C
37838685 CT-AACC
1 CTAAACC
* *
37838691 CTTATCC
1 CTAAACC
37838698 CTAAACC
1 CTAAACC
*
37838705 CTAAATC
1 CTAAACC
* *
37838712 ATAAAAC
1 CTAAACC
*
37838719 AT-AACC
1 CTAAACC
37838725 CATAAACC
1 C-TAAACC
*
37838733 CTAAATC
1 CTAAACC
37838740 C-ATAACC
1 CTA-AACC
37838747 C-ATAACC
1 CTA-AACC
*
37838754 CTTAACCC
1 C-TAAACC
37838762 CTAAACC
1 CTAAACC
*
37838769 TTAAACC
1 CTAAACC
37838776 C
1 C
37838777 CAACCATAAA
Statistics
Matches: 77, Mismatches: 16, Indels: 14
0.72 0.15 0.13
Matches are distributed among these distances:
6 7 0.09
7 58 0.75
8 11 0.14
9 1 0.01
ACGTcount: A:0.41, C:0.37, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:37838810 original size:14 final size:14
Alignment explanation
Indices: 37838699--37838815 Score: 76
Period size: 14 Copynumber: 8.3 Consensus size: 14
37838689 CCCTTATCCC
*
37838699 TAAACCCTAAATCA
1 TAAACCCTAAACCA
* * *
37838713 TAAAACATAACCCA
1 TAAACCCTAAACCA
37838727 TAAACCCTAAATCCA
1 TAAACCCTAAA-CCA
* *
37838742 T-AACCCATAACCCT
1 TAAACCC-TAAACCA
* *
37838756 TAACCCCTAAACCT
1 TAAACCCTAAACCA
*
37838770 TAAACCC-CAACCA
1 TAAACCCTAAACCA
* *
37838783 TAAAATCATAAACCA
1 T-AAACCCTAAACCA
* *
37838798 TAATCCCTAAACCT
1 TAAACCCTAAACCA
37838812 TAAA
1 TAAA
37838816 ATAGTAACTC
Statistics
Matches: 76, Mismatches: 22, Indels: 10
0.70 0.20 0.09
Matches are distributed among these distances:
13 5 0.07
14 54 0.71
15 17 0.22
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.20
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:37838815 original size:7 final size:7
Alignment explanation
Indices: 37838699--37838871 Score: 64
Period size: 7 Copynumber: 24.4 Consensus size: 7
37838689 CCCTTATCCC
*
37838699 TAAACCC
1 TAAACCA
*
37838706 TAAATCA
1 TAAACCA
*
37838713 TAAAACA
1 TAAACCA
*
37838720 TAACCCA
1 TAAACCA
*
37838727 TAAACCC
1 TAAACCA
37838734 TAAATCCA
1 TAAA-CCA
*
37838742 TAACCCA
1 TAAACCA
* *
37838749 TAACCCT
1 TAAACCA
* *
37838756 TAACCCC
1 TAAACCA
*
37838763 TAAACCT
1 TAAACCA
37838770 TAAACC-
1 TAAACCA
**
37838776 CCAACCA
1 TAAACCA
*
37838783 TAAAATCA
1 T-AAACCA
37838791 TAAACCA
1 TAAACCA
* *
37838798 TAATCCC
1 TAAACCA
*
37838805 TAAACCT
1 TAAACCA
37838812 TAAA--A
1 TAAACCA
*
37838817 TAGTAACTCT
1 TA--AAC-CA
* *
37838827 TAAATCT
1 TAAACCA
*
37838834 TAAACCC
1 TAAACCA
37838841 TAAACCA
1 TAAACCA
*
37838848 TATACCA
1 TAAACCA
*
37838855 TAAACCC
1 TAAACCA
*
37838862 TAAACTA
1 TAAACCA
37838869 TAA
1 TAA
37838872 TGATAATTAA
Statistics
Matches: 124, Mismatches: 34, Indels: 16
0.71 0.20 0.09
Matches are distributed among these distances:
5 2 0.02
6 4 0.03
7 104 0.84
8 12 0.10
10 2 0.02
ACGTcount: A:0.47, C:0.31, G:0.01, T:0.22
Consensus pattern (7 bp):
TAAACCA
Found at i:37839240 original size:39 final size:39
Alignment explanation
Indices: 37839162--37839266 Score: 129
Period size: 39 Copynumber: 2.6 Consensus size: 39
37839152 TAATTGTTTT
* * *
37839162 GCGGCGTTTTTCAGAAAGCGCCGCTTATGGTCGACCTATA
1 GCGGCGTTTTT-AAAAAGCGCCGCTAATGCTCGACCTATA
* * * *
37839202 GCGGCATTTTTTAAAAGCGCTGCTAATGCTCGATCTATA
1 GCGGCGTTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
37839241 GCGGCGTTTTTCAAAAAGCGCCGCTA
1 GCGGCGTTTTT-AAAAAGCGCCGCTA
37839267 GTGCCACTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 32 0.59
40 22 0.41
ACGTcount: A:0.23, C:0.24, G:0.25, T:0.29
Consensus pattern (39 bp):
GCGGCGTTTTTAAAAAGCGCCGCTAATGCTCGACCTATA
Found at i:37839277 original size:154 final size:155
Alignment explanation
Indices: 37839047--37839425 Score: 501
Period size: 154 Copynumber: 2.5 Consensus size: 155
37839037 AAGTTTTTTT
* ** * * *
37839047 GCGGCGTTTTTGACAAAGCGCCACTAAAGCTCGATCTATAGCAGCGTTTTTCAAAAAGTGCCGCT
1 GCGGCGTTTTTCACAAAGCGCTGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCT
**** * *
37839112 AATGCCACTAAAGCTCAACATAAAACGACGGTGTTGTGCTTAATTGTTTTGCGGCGTTTTTCAGA
66 AATGCCACTAAAGCTCAACATAAAACGACAACATTGAGCTTAATTGTTTTGCAGCGTTTTTCA-A
* *
37839177 AA-GCGCCGCTTATGGTCGACCTATA
130 AAGGCGCCGCTAATAGTCGACCTATA
* *
37839202 GCGGCATTTTTTA-AAAGCGCTGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCT
1 GCGGCGTTTTTCACAAAGCGCTGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCT
* * * *
37839266 AGTGCCACTAAAGTTCAACATAAAACGACAACATTGAGTTTAATTTTTTTGCAGCGTTTTTCAAA
66 AATGCCACTAAAGCTCAACATAAAACGACAACATTGAGCTTAATTGTTTTGCAGCGTTTTTCAAA
37839331 AGGCGCCGCTAATAGTCGACCTATA
131 AGGCGCCGCTAATAGTCGACCTATA
* * * ** *
37839356 GCGGCGTTTTTCAGAAAGAGCTGCTAATGCTCGATCTATAGCGGTGTTTTTCAGGAAGCGCTGCT
1 GCGGCGTTTTTCACAAAGCGCTGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCT
37839421 AATGC
66 AATGC
37839426 TTGATCTCTA
Statistics
Matches: 195, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
153 3 0.02
154 131 0.67
155 61 0.31
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (155 bp):
GCGGCGTTTTTCACAAAGCGCTGCTAATGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCT
AATGCCACTAAAGCTCAACATAAAACGACAACATTGAGCTTAATTGTTTTGCAGCGTTTTTCAAA
AGGCGCCGCTAATAGTCGACCTATA
Found at i:37839382 original size:40 final size:40
Alignment explanation
Indices: 37839319--37839446 Score: 143
Period size: 40 Copynumber: 3.2 Consensus size: 40
37839309 TTTTTTTGCA
*
37839319 GCGTTTTTCA-AAAGGCGCCGCTAATAG-TCGACCTATAGCG
1 GCGTTTTTCAGAAA-GCGCTGCTAAT-GCTCGACCTATAGCG
* *
37839359 GCGTTTTTCAGAAAGAGCTGCTAATGCTCGATCTATAGCG
1 GCGTTTTTCAGAAAGCGCTGCTAATGCTCGACCTATAGCG
* * * * * *
37839399 GTGTTTTTCAGGAAGCGCTGCTAATGCTTGATCTCTAGCA
1 GCGTTTTTCAGAAAGCGCTGCTAATGCTCGACCTATAGCG
37839439 GCGTTTTT
1 GCGTTTTT
37839447 TATCCAAACG
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 72 0.95
41 3 0.04
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (40 bp):
GCGTTTTTCAGAAAGCGCTGCTAATGCTCGACCTATAGCG
Found at i:37842055 original size:15 final size:15
Alignment explanation
Indices: 37842035--37842078 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
37842025 TATGATATTG
37842035 TATCTTGGATTTCTC
1 TATCTTGGATTTCTC
*
37842050 TATCTTGGACTTCTC
1 TATCTTGGATTTCTC
* * *
37842065 AATCCTGGGTTTCT
1 TATCTTGGATTTCT
37842079 TGTTATCTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.14, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:37843855 original size:50 final size:50
Alignment explanation
Indices: 37843689--37844063 Score: 297
Period size: 50 Copynumber: 7.4 Consensus size: 50
37843679 TGAGAAGACA
* * * * *
37843689 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATAGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-G-GTTAGGTCACG
* * * * * * * *
37843741 TGTGTAGTACTAACTACAGGCTACTATGCGTACCCGATAGTTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTT-AGGTCACG
*
37843792 TTTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
* * * * * * *
37843842 TGTGTAGAACTAAGTGCAGGCTACTACTTGTACCAGATTGATAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
* * ** ** * *
37843892 TGTGTAGTACCAAGTGCAGGCTACTA--TGCATACCCATTAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAT-CAGA-T-GGTTAGGTCACG
* * * * *
37843943 TGTGTAGTACTAAGTGCAGACTACTACATGTATTAGATGGATAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
* * * * * * *
37843993 TGTGTAGCACTAAGTGCAGGGTACTACGTGCACCAGATTGATAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
37844043 TGTGTAGTACTAAGTGCAGGC
1 TGTGTAGTACTAAGTGCAGGC
37844064 CACCAGGTAC
Statistics
Matches: 253, Mismatches: 63, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
48 3 0.01
49 3 0.01
50 140 0.55
51 69 0.27
52 34 0.13
53 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
Found at i:37843875 original size:101 final size:99
Alignment explanation
Indices: 37843689--37844063 Score: 310
Period size: 101 Copynumber: 3.7 Consensus size: 99
37843679 TGAGAAGACA
* * ** * *
37843689 TGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATAGTTTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGCATCAGATAG-GTTAGGTCACGTGTGTAGTACTAA
* * * * *
37843754 CTACAGGCTACTA-TGCGTACCCGATAGTTTCAATCACG
65 GTGCAGGCTACTACT-TGTACCAGAT-G-AT-AATCACG
* * *
37843792 TTTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGAT-GGTTAGGTCACGTGTGTAGAACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGCATCAGATAGGTTAGGTCACGTGTGTAGTACTAAG
* * *
37843856 TGCAGGCTACTACTTGTACCAGATTGATAGGTCGCA
66 TGCAGGCTACTACTTGTACCAGA-TGATA-ATCACG
* ** ** * *
37843892 TGTGTAGTACCAAGTGCAGGCTACTA--TGCATACCCATTAACTTCGATCACGTGTGTAGTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGCAT-CAGA-TAGGTTAGGTCACGTGTGTAGTACTA
* * **
37843955 AGTGCAGACTACTACATGTATTAGATGGATAAGTCACG
64 AGTGCAGGCTACTACTTGTACCAGAT-GATAA-TCACG
* * * * * *
37843993 TGTGTAGCACTAAGTGCAGGGTACTACGTGCACCAGAT-TGATAGGTCACATGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGCATCAGATAGGTTAGGTCACGTGTGTAGTACTAAG
37844057 TGCAGGC
66 TGCAGGC
37844064 CACCAGGTAC
Statistics
Matches: 217, Mismatches: 45, Indels: 23
0.76 0.16 0.08
Matches are distributed among these distances:
98 4 0.02
99 3 0.01
100 56 0.26
101 112 0.52
102 5 0.02
103 37 0.17
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (99 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGCATCAGATAGGTTAGGTCACGTGTGTAGTACTAAG
TGCAGGCTACTACTTGTACCAGATGATAATCACG
Found at i:37844006 original size:151 final size:151
Alignment explanation
Indices: 37843732--37844063 Score: 477
Period size: 151 Copynumber: 2.2 Consensus size: 151
37843722 AAGATAGTTT
* * * * ** *
37843732 TAGGTCACGTGTGTAGTACTAACTACAGGCTACTATGCGTACCCGATAGTTTCAATCACGTTTGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCAATCACGTGTGT
* * * *
37843797 AGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGAACTAAGTGCAGG
66 AGTACTAAGTGCAGACTACTACATGTATCAGATGGATAAGTCACGTGTGTAGAACTAAGTGCAGG
* *
37843862 CTACTACTTGTACCAGATTGA
131 CTACTACGTGCACCAGATTGA
* * *
37843883 TAGGTCGCATGTGTAGTACCAAGTGCAGGCTACTATGCATACCC-ATTAACTTCGATCACGTGTG
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGA-TAACTTCAATCACGTGTG
* *
37843947 TAGTACTAAGTGCAGACTACTACATGTATTAGATGGATAAGTCACGTGTGTAGCACTAAGTGCAG
65 TAGTACTAAGTGCAGACTACTACATGTATCAGATGGATAAGTCACGTGTGTAGAACTAAGTGCAG
*
37844012 GGTACTACGTGCACCAGATTGA
130 GCTACTACGTGCACCAGATTGA
37844034 TAGGTCACATGTGTAGTACTAAGTGCAGGC
1 TAGGTCACATGTGTAGTACTAAGTGCAGGC
37844064 CACCAGGTAC
Statistics
Matches: 159, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
150 1 0.01
151 158 0.99
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (151 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGATAACTTCAATCACGTGTGT
AGTACTAAGTGCAGACTACTACATGTATCAGATGGATAAGTCACGTGTGTAGAACTAAGTGCAGG
CTACTACGTGCACCAGATTGA
Found at i:37844250 original size:16 final size:16
Alignment explanation
Indices: 37844229--37844260 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
37844219 AGAATGGAGT
37844229 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
37844245 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
37844261 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:37844923 original size:180 final size:180
Alignment explanation
Indices: 37844592--37844924 Score: 488
Period size: 180 Copynumber: 1.9 Consensus size: 180
37844582 GAGCTGTACA
*
37844592 ATGAGATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTCAGACAGTGAAACAGAGATATATTT
1 ATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTCAGACAGTGAAACAGAGATATATTT
* * * * * *
37844657 AATGAATAAATTGTACTAATTTGCTAAACTAAAAATTCTTAAAGTTTTATGGTAAGAATATATGT
66 AATGAATAAACTGTACTAATTGGCTAAACTAAAAATTCTAAAAATTTTATGGTAAGAAGATATAT
* * *
37844722 GACTCTAGTTTCTCTTAAAATTAGTGTTTCTCAATTTGGAGTCCCATAAC
131 GACTCCAGTTTCACATAAAATTAGTGTTTCTCAATTTGGAGTCCCATAAC
* * * *
37844772 ATGAAATAAATAATTTTTAGTGAAGAGAGGTCGGAACTGTCAGACAGTGAAATAGGGGA-ATCTT
1 ATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTCAGACAGTGAAACA-GAGATATATT
*
37844836 TAATGAATAAACTGTACTAATTGGCTAAACTAAAAATTCTAAAAATTTTATGGTGAGAAGATATA
65 TAATGAATAAACTGTACTAATTGGCTAAACTAAAAATTCTAAAAATTTTATGGTAAGAAGATATA
* * *
37844901 TGAGTCCATTTTCAGATAAAATTA
130 TGACTCCAGTTTCACATAAAATTA
37844925 ACTGATCTTA
Statistics
Matches: 134, Mismatches: 18, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
180 131 0.98
181 3 0.02
ACGTcount: A:0.40, C:0.10, G:0.18, T:0.33
Consensus pattern (180 bp):
ATGAAATAAATAATTTTTAGTGAAGAGAGGTCAGAACTGTCAGACAGTGAAACAGAGATATATTT
AATGAATAAACTGTACTAATTGGCTAAACTAAAAATTCTAAAAATTTTATGGTAAGAAGATATAT
GACTCCAGTTTCACATAAAATTAGTGTTTCTCAATTTGGAGTCCCATAAC
Found at i:37849514 original size:25 final size:25
Alignment explanation
Indices: 37849480--37849527 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
37849470 CGGGCTAAAC
37849480 AGGAAACTCATAAGAG-TTTTTAATT
1 AGGAAACTCAT-AGAGCTTTTTAATT
*
37849505 AGGAAGCTCATAGAGCTTTTTAA
1 AGGAAACTCATAGAGCTTTTTAA
37849528 CAGATAATTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (25 bp):
AGGAAACTCATAGAGCTTTTTAATT
Found at i:37861092 original size:96 final size:94
Alignment explanation
Indices: 37860898--37861216 Score: 340
Period size: 96 Copynumber: 3.3 Consensus size: 94
37860888 GGGTGAATTA
* * * * * * * *
37860898 CCGATGCCATTTTCCAAACATCGTCTTACACTGGTTCACATG-TAGAGGCCGAT-CCATGTCCCA
1 CCGATGCCA-TGTCCAGACATGGTCTTACACTAGCTCTCATGAT-GTGGCCGATGCCATGTCAC-
* * *
37860961 AACATGGTCTTACACTAGCTCTCATC-TCATTG
63 AACATGGTCTTACACTAGCGCACA-CATCAATG
37860993 CCGATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATGATGTGGCCGATGCCATGTCACAG
1 CCGATGCCATGTCC-AGACATGGTCTTACACTAGCTCTCATGATGTGGCCGATGCCATGTCACA-
*
37861058 ACATGGTCTTACACTAGCGCACACATCAACG
64 ACATGGTCTTACACTAGCGCACACATCAATG
* * **
37861089 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGATGTGGATGATGCCATGCTCTA-
1 CCGATGCCATGT-CCAGACATGGTCTTACACTAGCTCTCATGATGTGGCCGATGCCATG-TC-AC
* * *
37861153 AACATGGTCTTATAGTAGCGCACATATCAATG
63 AACATGGTCTTACACTAGCGCACACATCAATG
*
37861185 CCGATGCCATGTTCCAGACATGGTCTTTCACT
1 CCGATGCCATG-TCCAGACATGGTCTTACACT
37861217 GGCACACATA
Statistics
Matches: 193, Mismatches: 22, Indels: 17
0.83 0.09 0.07
Matches are distributed among these distances:
94 4 0.02
95 41 0.21
96 141 0.73
97 6 0.03
98 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
CCGATGCCATGTCCAGACATGGTCTTACACTAGCTCTCATGATGTGGCCGATGCCATGTCACAAC
ATGGTCTTACACTAGCGCACACATCAATG
Found at i:37861158 original size:144 final size:139
Alignment explanation
Indices: 37860898--37861225 Score: 331
Period size: 144 Copynumber: 2.3 Consensus size: 139
37860888 GGGTGAATTA
* * * ** * *
37860898 CCGATGCCATTTTCCAAACATCGTCTTACACTGGTTCACATGTAGAGGCCGATCCATGTCCCAAA
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCACACAT-CA-ACGCCGATCCATGTCCCAAA
* *
37860963 CATGGTCTTACACTAGCTCTCATCTCATTGCCGATGCCATGTCCTAGACATGGTCTTACACTAGC
64 CATGGTCTTACACTAGCTCTCA-CTCATTGACGATGCCATGTCCTAAACATGGTCTTACACTAGC
* * *
37861028 TCTCATGAT-GTGG
128 GCACAT-ATAAT-G
37861041 CCGATGCCATG-TCACAGACATGGTCTTACACTAGCGCACACATCAACGCCGATGCCATGTCCCA
1 CCGATGCCATGTTC-CAGACATGGTCTTACACT-G-GCACACATCAACGCCGAT-CCATGTCCCA
* * * * * * *
37861105 GACATGGTCTTACATTGGCTCTCA-TGATGTGGATGATGCCATG-CTCTAAACATGGTCTTATAG
62 AACATGGTCTTACACTAGCTCTCACTCAT-T-GACGATGCCATGTC-CTAAACATGGTCTTACAC
37861168 TAGCGCACATATCAATG
124 TAGCGCACATAT-AATG
*
37861185 CCGATGCCATGTTCCAGACATGGTCTTTCACTGGCACACAT
1 CCGATGCCATGTTCCAGACATGGTCTTACACTGGCACACAT
37861226 ATCACCCAAA
Statistics
Matches: 155, Mismatches: 20, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
142 13 0.08
143 38 0.25
144 95 0.61
145 9 0.06
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (139 bp):
CCGATGCCATGTTCCAGACATGGTCTTACACTGGCACACATCAACGCCGATCCATGTCCCAAACA
TGGTCTTACACTAGCTCTCACTCATTGACGATGCCATGTCCTAAACATGGTCTTACACTAGCGCA
CATATAATG
Found at i:37861225 original size:48 final size:48
Alignment explanation
Indices: 37860898--37861229 Score: 248
Period size: 48 Copynumber: 6.9 Consensus size: 48
37860888 GGGTGAATTA
* * * * * * *
37860898 CCGATGCCATTTTCCAAACATCGTCTTACACTGGTTCACATGT-AGAGG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCA-ATG
* * * * *
37860946 CCGAT-CCATGTCCCAAACATGGTCTTACACTAGCTCTCATCTCATTG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCAATG
* *
37860993 CCGATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTCATGAT--GTGG
1 CCGATGCCATGTTCC-AGACATGGTCTTACACTAGCTCACAT-ATCAAT-G
* * *
37861041 CCGATGCCATG-TCACAGACATGGTCTTACACTAGCGCACACATCAACG
1 CCGATGCCATGTTC-CAGACATGGTCTTACACTAGCTCACATATCAATG
* * * * *
37861089 CCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATGAT--GTGG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCACAT-ATCAAT-G
** * * * * * *
37861137 ATGATGCCATGCTCTAAACATGGTCTTATAGTAGCGCACATATCAATG
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCAATG
* * *
37861185 CCGATGCCATGTTCCAGACATGGTCTTTCACTGGCACACATATCA
1 CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCA
37861230 CCCAAATGTC
Statistics
Matches: 223, Mismatches: 48, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
47 43 0.19
48 174 0.78
49 6 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCAATG
Found at i:37868750 original size:48 final size:47
Alignment explanation
Indices: 37868655--37868887 Score: 204
Period size: 48 Copynumber: 4.9 Consensus size: 47
37868645 GTGAATTGTC
** * * * *
37868655 GATGCCATGTTACAGA-ATGATCTTACACTGCTCACATGTCAAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGTCACATATCAATGCT
* *
37868701 GATGCCATGTCCCAGATATGGTCTTACACTGGTGCACATATCAACGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGT-CACATATCAATGCT
* * *
37868749 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATGAT--ATGGT
1 GATGCCATGTCCCAGACATGGTCTTACACTGG-TCACAT-ATCAATGCT
* * ** * *
37868796 CGATGCCATGTTCCAAACATGGTCTTACACTAGCG-CATTTATCAATACC
1 -GATGCCATGTCCCAGACATGGTCTTACACT-G-GTCACATATCAATGCT
* *
37868845 GATGCCATGTCCCAGACATGTTCTTACACTGGCACACATATCA
1 GATGCCATGTCCCAGACATGGTCTTACACTGG-TCACATATCA
37868888 CCCAAATGTC
Statistics
Matches: 153, Mismatches: 23, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
46 15 0.10
47 20 0.13
48 111 0.73
49 6 0.04
50 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGTCACATATCAATGCT
Found at i:37868806 original size:96 final size:96
Alignment explanation
Indices: 37868701--37868877 Score: 246
Period size: 96 Copynumber: 1.8 Consensus size: 96
37868691 TGTCAAGGCT
* * * * * *
37868701 GATGCCATGTCCCAGATATGGTCTTACACTGGTGCACATATCAACGCTGATGCCATGTCCCAAAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAACACCGATGCCATGTCCCAAAC
37868766 ATGGTCTTACACTGGCTCTCATGATATGGTC
66 ATGGTCTTACACTGGCTCTCATGATATGGTC
* ** * *
37868797 GATGCCATGTTCCAAACATGGTCTTACACTAGCGCATTTATCAATACCGATGCCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAACACCGATGCCATGTCCCAAAC
*
37868862 ATGTTCTTACACTGGC
66 ATGGTCTTACACTGGC
37868878 ACACATATCA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 69 1.00
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (96 bp):
GATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAACACCGATGCCATGTCCCAAAC
ATGGTCTTACACTGGCTCTCATGATATGGTC
Found at i:37874880 original size:29 final size:28
Alignment explanation
Indices: 37874844--37874921 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37874834 TCATGAGATT
37874844 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37874874 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37874901 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
37874922 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:37875194 original size:171 final size:174
Alignment explanation
Indices: 37874874--37875198 Score: 548
Period size: 171 Copynumber: 1.9 Consensus size: 174
37874864 AAATTGTACA
* *
37874874 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
37874939 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
37875004 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * **
37875048 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACGTTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
37875113 TGTGC-AACCC-A-ATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
37875175 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
37875199 ACCTTGAGTT
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
171 73 0.51
172 1 0.01
173 5 0.04
174 63 0.44
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:37883035 original size:29 final size:28
Alignment explanation
Indices: 37882999--37883076 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
37882989 TCATGAGATT
37882999 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
37883029 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
37883056 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
37883077 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Done.