Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 122 of 290
Found at i:38211682 original size:41 final size:43
Alignment explanation
Indices: 38211626--38211734 Score: 111
Period size: 41 Copynumber: 2.6 Consensus size: 43
38211616 GGTTATGTGT
* *
38211626 AAGACCATGTCTGGGACA-TCGGCATCG-TATATGATT-CGTGC
1 AAGACCCTGTCTGGGACAGT-GGCATCGATATATGATTACATGC
* * *
38211667 AAGACCCTGTCTGGGATAGTGGCATCGATATGTGATTACATGT
1 AAGACCCTGTCTGGGACAGTGGCATCGATATATGATTACATGC
38211710 AAGACCAC-GTCTGGGAC-GTTGGCAT
1 AAGACC-CTGTCTGGGACAG-TGGCAT
38211735 TGTACGATAT
Statistics
Matches: 57, Mismatches: 6, Indels: 8
0.80 0.08 0.11
Matches are distributed among these distances:
41 23 0.40
42 10 0.18
43 23 0.40
44 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (43 bp):
AAGACCCTGTCTGGGACAGTGGCATCGATATATGATTACATGC
Found at i:38219967 original size:45 final size:44
Alignment explanation
Indices: 38219918--38220050 Score: 132
Period size: 45 Copynumber: 3.0 Consensus size: 44
38219908 AGGATTTATG
*
38219918 ATATGTGTTCTCGTGTAAGACCACATTTGGGACATTGACATCGAT
1 ATATGTGTT-TCGTGTAAGACCACATCTGGGACATTGACATCGAT
* * **
38219963 ATATGTAGTTAT-GTGTAAGACCATATCTGGGACATCGGTATCG-T
1 ATATGT-GTT-TCGTGTAAGACCACATCTGGGACATTGACATCGAT
* *
38220007 AT-T-TGATTCGTGTAAGACC-CTATCTGGGACAGTGACATCGAT
1 ATATGTGTTTCGTGTAAGACCAC-ATCTGGGACATTGACATCGAT
38220049 AT
1 AT
38220051 GTGATACAAG
Statistics
Matches: 72, Mismatches: 12, Indels: 11
0.76 0.13 0.12
Matches are distributed among these distances:
40 1 0.01
41 27 0.38
42 4 0.06
43 1 0.01
44 3 0.04
45 32 0.44
46 4 0.06
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (44 bp):
ATATGTGTTTCGTGTAAGACCACATCTGGGACATTGACATCGAT
Found at i:38219997 original size:39 final size:41
Alignment explanation
Indices: 38219954--38220037 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 41
38219944 TTGGGACATT
*
38219954 GACATCGATATATGTAGTT-A-T-GTGTAAGACCATATCTGG
1 GACATCGATAT-CGTAGTTGATTCGTGTAAGACCATATCTGG
* * *
38219993 GACATCGGTATCGTATTTGATTCGTGTAAGACCCTATCTGG
1 GACATCGATATCGTAGTTGATTCGTGTAAGACCATATCTGG
38220034 GACA
1 GACA
38220038 GTGACATCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 5 0.13
39 11 0.29
40 1 0.03
41 21 0.55
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (41 bp):
GACATCGATATCGTAGTTGATTCGTGTAAGACCATATCTGG
Found at i:38222562 original size:9 final size:9
Alignment explanation
Indices: 38222545--38222627 Score: 103
Period size: 9 Copynumber: 9.2 Consensus size: 9
38222535 AGTATAAAAC
*
38222545 TAACTGAAT
1 TAACCGAAT
38222554 TAACCGAAT
1 TAACCGAAT
*
38222563 TAATCGAAT
1 TAACCGAAT
*
38222572 TAACCAAAT
1 TAACCGAAT
*
38222581 TACCCGAAT
1 TAACCGAAT
*
38222590 TACCCGAAT
1 TAACCGAAT
*
38222599 TACCCGAAT
1 TAACCGAAT
*
38222608 TACCCGAAT
1 TAACCGAAT
38222617 TAACCGAAT
1 TAACCGAAT
38222626 TA
1 TA
38222628 TTTGTATAAA
Statistics
Matches: 67, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 67 1.00
ACGTcount: A:0.41, C:0.24, G:0.10, T:0.25
Consensus pattern (9 bp):
TAACCGAAT
Found at i:38222758 original size:28 final size:29
Alignment explanation
Indices: 38222718--38222772 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
38222708 TATGATTGGG
38222718 TTGGGTACTTGGGTTA-GTATATATTAGA
1 TTGGGTACTTGGGTTATGTATATATTAGA
* *
38222746 TTGGGTATTTGGGTTATTTATATATTA
1 TTGGGTACTTGGGTTATGTATATATTA
38222773 TAATTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.24, C:0.02, G:0.25, T:0.49
Consensus pattern (29 bp):
TTGGGTACTTGGGTTATGTATATATTAGA
Found at i:38223278 original size:27 final size:27
Alignment explanation
Indices: 38223248--38223312 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
38223238 CCCCAAAATA
*
38223248 GGTAAAATGACCGTAATGCCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
38223275 GGTAAAATGATCGTAATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
38223302 GGTAAAATGAC
1 GGTAAAATGAC
38223313 GATTATGCCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:38223498 original size:27 final size:26
Alignment explanation
Indices: 38223449--38223500 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
38223439 TGGAGGAAGT
*
38223449 ACTGTACTGGTGACTATGTCACATTC
1 ACTGTACTGGTGACTATGCCACATTC
* *
38223475 ACTGATACTGGTGGCTTTGCCACATT
1 ACTG-TACTGGTGACTATGCCACATT
38223501 TACTATTTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (26 bp):
ACTGTACTGGTGACTATGCCACATTC
Found at i:38223708 original size:28 final size:28
Alignment explanation
Indices: 38223667--38223726 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
38223657 ACAGTACTGA
* * *
38223667 TACTGTATTGGGCTTAGGCCCACACTAT
1 TACTATATAGGGCTAAGGCCCACACTAT
* *
38223695 TACTATATAGGGCTAAGGCCCAGACTGT
1 TACTATATAGGGCTAAGGCCCACACTAT
38223723 TACT
1 TACT
38223727 GCATGCATTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (28 bp):
TACTATATAGGGCTAAGGCCCACACTAT
Found at i:38230984 original size:40 final size:40
Alignment explanation
Indices: 38230879--38231085 Score: 260
Period size: 40 Copynumber: 5.2 Consensus size: 40
38230869 GGATTGATAC
* *
38230879 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
38230919 CCGGGTTGAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
38230958 CCGGGCTAAGTCCCAAAGGAATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
38230998 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
38231038 CCGGGCTAAGTCCCAAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
38231078 CC-GGCTAA
1 CCGGGCTAA
38231086 ACTCCGAAGG
Statistics
Matches: 147, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 41 0.28
40 106 0.72
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:38239292 original size:40 final size:40
Alignment explanation
Indices: 38239095--38239301 Score: 269
Period size: 40 Copynumber: 5.2 Consensus size: 40
38239085 GGATTGATAC
* *
38239095 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* * *
38239135 CTGGGCTGAG-CCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
** *
38239174 CCGGGCTAAGTTTCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
38239214 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
38239254 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
38239294 CC-GGCTAA
1 CCGGGCTAA
38239302 ACTCTGAAGG
Statistics
Matches: 148, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 40 0.27
40 108 0.73
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:38239311 original size:119 final size:119
Alignment explanation
Indices: 38239095--38239311 Score: 282
Period size: 119 Copynumber: 1.8 Consensus size: 119
38239085 GGATTGATAC
* * * *
38239095 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCTGGGCTGAGCCCGAAGGCATTTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGT
* *
38239160 ACGAGTTACTATATCCGGGCTAAGTTTCGAAGGCATTTGTGCGAGTTACTATAA
66 ACGAGTTACTATATCCGGGCTAACTCTCGAAGGCATTTGTGCGAGTTACTATAA
*
38239214 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGGCATTT
*
38239278 G-AGCTAG-TAGCTATATCC-GGCTAAACTCT-GAAGG
64 GTA-CGAGTTA-CTATATCCGGGCT-AACTCTCGAAGG
38239312 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 8, Indels: 10
0.83 0.08 0.10
Matches are distributed among these distances:
118 2 0.02
119 54 0.64
120 29 0.34
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (119 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGGCATTTGT
ACGAGTTACTATATCCGGGCTAACTCTCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:38241768 original size:27 final size:27
Alignment explanation
Indices: 38241738--38241856 Score: 166
Period size: 27 Copynumber: 4.4 Consensus size: 27
38241728 ATTACCAAAG
* *
38241738 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
38241765 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
38241792 TACCCTCTATTTAAAAAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
38241819 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
38241846 TACCCTCGATT
1 TACCCTCGATT
38241857 AGCAGAATTA
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:38241867 original size:54 final size:54
Alignment explanation
Indices: 38241738--38241856 Score: 184
Period size: 54 Copynumber: 2.2 Consensus size: 54
38241728 ATTACCAAAG
* * *
38241738 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTAAAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
* * *
38241792 TACCCTCTATTTAAAAAATTACTGTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTAAAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
38241846 TACCCTCGATT
1 TACCCTCGATT
38241857 AGCAGAATTA
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.28, C:0.22, G:0.08, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTAAAGAATTACTGTTTTACCCTCGATTTACAGAATTACCATTT
Found at i:38241968 original size:27 final size:27
Alignment explanation
Indices: 38241869--38241968 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
38241859 CAGAATTACC
* *
38241869 AAAATAACCAAAATATCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* **
38241896 AAAATTACTAAAATACCTGTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
38241923 AAAATTACCAAAATGCCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
38241950 AAAATTACCGAAATACCCC
1 AAAATTACCAAAATACCCC
38241969 CGTAGGGTAG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.28
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:38241982 original size:27 final size:27
Alignment explanation
Indices: 38241952--38242093 Score: 176
Period size: 27 Copynumber: 5.3 Consensus size: 27
38241942 TGGCTTGTAA
*
38241952 AATTACCGAAATACCCCCGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
38241979 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
38242006 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
38242033 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * * *
38242060 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
38242087 AATTACC
1 AATTACC
38242094 ATTTTGCCCC
Statistics
Matches: 96, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 96 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:38241983 original size:54 final size:54
Alignment explanation
Indices: 38241925--38242094 Score: 153
Period size: 54 Copynumber: 3.1 Consensus size: 54
38241915 TGGTTTGTAA
* ***
38241925 AATTACCAAAATGCCCCTGGCTTGTA-AAATTACCGAAATACCCCCGTAGGGTAG
1 AATTACCAAAATACCCCTGGAGGGTAGAAA-TACCGAAATACCCCCGTAGGGTAG
* * * *
38241979 AATTACTAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGGAGGGTAGAAATACCGAAATACCCCCGTAGGGTAG
** ** * * * ** * *
38242033 AATTACTGAAATACCCCTATAGGGTAGAATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGGAGGGTAGAAATACCGAAATACCCCCGTAGGGTAG
38242087 AATTACCA
1 AATTACCA
38242095 TTTTGCCCCT
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
54 93 0.97
55 3 0.03
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGGAGGGTAGAAATACCGAAATACCCCCGTAGGGTAG
Found at i:38242023 original size:81 final size:80
Alignment explanation
Indices: 38241921--38242094 Score: 188
Period size: 81 Copynumber: 2.1 Consensus size: 80
38241911 CCTGTGGTTT
* *** *
38241921 GTAAAATTACCAAAATGCCCCTGGCTTGTAAAATTACCGAAATACCCCCGTAGGGTAGAATTA-C
1 GTAAAA-TACCAAAATACCCCTGGAGGGTAAAATTACCGAAATACCCCCATAGGGTAGAATTATC
38241985 TAAAATACCCTTGTAGG
65 -AAAATACCCTTGTAGG
* * * * *
38242002 GTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTATC
1 GTA-AAATACCAAAATACCCCTGGAGGGTAAAATTACCGAAATACCCCCATAGGGTAGAATTATC
* * *
38242067 GAGATACCCTTGTGGG
65 AAAATACCCTTGTAGG
38242083 GTAAAATTACCA
1 GTAAAA-TACCA
38242095 TTTTGCCCCT
Statistics
Matches: 76, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
80 3 0.04
81 69 0.91
82 4 0.05
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.25
Consensus pattern (80 bp):
GTAAAATACCAAAATACCCCTGGAGGGTAAAATTACCGAAATACCCCCATAGGGTAGAATTATCA
AAATACCCTTGTAGG
Found at i:38243513 original size:69 final size:69
Alignment explanation
Indices: 38243419--38243558 Score: 235
Period size: 69 Copynumber: 2.0 Consensus size: 69
38243409 TTATAGATTG
*
38243419 AAGTGCTATATTAAAAAACTACTATAGATAGTAGCACTATATTGGAACTCTCTAGTTAGAGTAAA
1 AAGTGCTATATTAAAAAACTACTATAGATAGTAGCACTATACTGGAACTCTCTAGTTAGAGTAAA
38243484 CTGT
66 CTGT
* * * *
38243488 AAGTGCTTTATTGAGAAACTACTATAGATAGTAGCGCTATACTGGAACTCTCTAGTTAGAGTAAA
1 AAGTGCTATATTAAAAAACTACTATAGATAGTAGCACTATACTGGAACTCTCTAGTTAGAGTAAA
38243553 CTGT
66 CTGT
38243557 AA
1 AA
38243559 CGCTTGAATT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 66 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (69 bp):
AAGTGCTATATTAAAAAACTACTATAGATAGTAGCACTATACTGGAACTCTCTAGTTAGAGTAAA
CTGT
Found at i:38244825 original size:27 final size:27
Alignment explanation
Indices: 38244775--38244896 Score: 75
Period size: 27 Copynumber: 4.6 Consensus size: 27
38244765 AATACTTTAG
* * *
38244775 TTTACAAAATTACTAAAATGCCCTCAA
1 TTTATAAAATTACCAAAATACCCTCAA
* * *
38244802 TTTGTAAAATTACCAAAGTACCCTCGA
1 TTTATAAAATTACCAAAATACCCTCAA
* **** *
38244829 TTTATAGAATTACCGTTTTACCCT-GA
1 TTTATAAAATTACCAAAATACCCTCAA
* ****
38244855 TTTATAGAATTACCGTTTTACCCTCAA
1 TTTATAAAATTACCAAAATACCCTCAA
*
38244882 TTTATAGAATTACCA
1 TTTATAAAATTACCA
38244897 TTTTACCCTC
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 26 0.32
27 54 0.68
ACGTcount: A:0.35, C:0.20, G:0.08, T:0.36
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCTCAA
Found at i:38244900 original size:27 final size:27
Alignment explanation
Indices: 38244820--38244964 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
38244810 ATTACCAAAG
*
38244820 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
38244847 TACCCT-GATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
38244873 TACCCTCAATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* **
38244900 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
38244927 TACCCTCGATTTACAGAATGACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
38244954 TACCCTCGATT
1 TACCCTCGATT
38244965 AGCAAAATTA
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
26 26 0.24
27 82 0.76
ACGTcount: A:0.28, C:0.23, G:0.10, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:38244918 original size:80 final size:81
Alignment explanation
Indices: 38244795--38244979 Score: 239
Period size: 80 Copynumber: 2.3 Consensus size: 81
38244785 TACTAAAATG
* *
38244795 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTTTACCCT-GATTTA
1 CCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
* * *
38244859 TAGAATTACCGTTTTA
66 CAGAATGACCATTTTA
* *** *
38244875 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTA
1 CCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
38244940 CAGAATGACCATTTTA
66 CAGAATGACCATTTTA
* *
38244956 CCCTCGA-TTAGCAAAATTACCAAA
1 CCCTCAATTTA-TAAAATTACCAAA
38244980 ATAACCAAAA
Statistics
Matches: 88, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
80 54 0.61
81 34 0.39
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (81 bp):
CCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTA
CAGAATGACCATTTTA
Found at i:38245016 original size:27 final size:27
Alignment explanation
Indices: 38244977--38245039 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
38244967 CAAAATTACC
*
38244977 AAAATAACCAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
38245004 AAAATTACTAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
38245031 AGAATTACC
1 AAAATTACC
38245040 GTGGCTTGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:38245081 original size:27 final size:27
Alignment explanation
Indices: 38245051--38245192 Score: 167
Period size: 27 Copynumber: 5.3 Consensus size: 27
38245041 TGGCTTGTAA
*
38245051 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
38245078 AATTACTGAATTACCCTTGTAGTGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
38245105 AAATACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
38245132 AATTACCGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
38245159 AATTATCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
38245186 AATTACC
1 AATTACC
38245193 ATTTTGCCCC
Statistics
Matches: 93, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:38245466 original size:24 final size:25
Alignment explanation
Indices: 38245395--38245477 Score: 123
Period size: 25 Copynumber: 3.4 Consensus size: 25
38245385 AAGAAGTGCT
* *
38245395 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
38245420 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
38245445 AAAAGGGCTTTGCCCCAG-TTATTA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
38245469 AAAGGGGCT
1 AAAAGGGCT
38245478 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
24 13 0.24
25 41 0.76
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:38245488 original size:50 final size:50
Alignment explanation
Indices: 38245395--38245489 Score: 122
Period size: 50 Copynumber: 1.9 Consensus size: 50
38245385 AAGAAGTGCT
**
38245395 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
**
38245445 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGGGGCTAGGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACCGAAAA-GGGCTAGGCC-CCAGTT
38245490 ATATGATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
48 4 0.10
49 11 0.28
50 24 0.62
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACCGAAAAGGGCTAGGCCCCAGTTTATCA
Found at i:38255467 original size:14 final size:14
Alignment explanation
Indices: 38255448--38255474 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38255438 CTAAAATTTC
38255448 GAGATAGAATTTGA
1 GAGATAGAATTTGA
38255462 GAGATAGAATTTG
1 GAGATAGAATTTG
38255475 TGTCCCGAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.00, G:0.30, T:0.30
Consensus pattern (14 bp):
GAGATAGAATTTGA
Found at i:38257284 original size:21 final size:21
Alignment explanation
Indices: 38257260--38257301 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
38257250 AGAGAAAAAG
38257260 AAAACTAAGGTTCGACACTTT
1 AAAACTAAGGTTCGACACTTT
38257281 AAAACTAAGGTTCGACACTTT
1 AAAACTAAGGTTCGACACTTT
38257302 GATTTGGTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (21 bp):
AAAACTAAGGTTCGACACTTT
Found at i:38269748 original size:40 final size:41
Alignment explanation
Indices: 38269685--38269926 Score: 327
Period size: 40 Copynumber: 6.0 Consensus size: 41
38269675 CGAGATTTAA
* *
38269685 CCGGATA-TAGCT-ACTCGCTCAAATGCCTTTGGGACTTAGC
1 CCGGATATTAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
**
38269725 CCGGATA-TAGTAGTTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
38269765 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
38269805 CC-GAAATTAGTAACTCGTACAAATGCCTTCGGGACTTATC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
38269845 CCGGA-ATTAGTAACTCGCACAAATTCCTTCGGGGCTTAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
38269885 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
38269925 CC
1 CC
38269927 CGTTATCATC
Statistics
Matches: 182, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
39 4 0.02
40 176 0.97
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (41 bp):
CCGGATATTAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:38272384 original size:42 final size:42
Alignment explanation
Indices: 38272282--38272401 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 42
38272272 GTCTAAGACA
* *
38272282 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATT
* * *
38272324 TACGTATAAGAACATGTCTAGGACATCA-GCATCGTATCT-A-ATT
1 T-CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TGAGATT
* *
38272367 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGAT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGAT
38272402 ATTGAATTAC
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
41 3 0.05
42 26 0.41
43 28 0.44
44 5 0.08
45 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.27
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATT
Found at i:38285238 original size:27 final size:27
Alignment explanation
Indices: 38285206--38285429 Score: 225
Period size: 27 Copynumber: 8.3 Consensus size: 27
38285196 CCAAAATAGG
38285206 AAAATGACCGTAATGCCCTTGTAGGGT
1 AAAATGACCGTAATGCCCTTGTAGGGT
*
38285233 AAAATGACCGTAATG-CCTCTATAGGGT
1 AAAATGACCGTAATGCCCT-TGTAGGGT
** * *
38285260 AAAATGGTCGTAATACCCCTGTAGGGT
1 AAAATGACCGTAATGCCCTTGTAGGGT
* * *
38285287 AAAATGACCATAATACCCCTGTAGGGT
1 AAAATGACCGTAATGCCCTTGTAGGGT
* ** *
38285314 AAAATAATTGTAATGCCTTTGTAGGGT
1 AAAATGACCGTAATGCCCTTGTAGGGT
* * *
38285341 AAAATGACCATAATGCCCTTGTAAGAT
1 AAAATGACCGTAATGCCCTTGTAGGGT
* * * *
38285368 AAAATGACCATAATACCCCTATAGGGT
1 AAAATGACCGTAATGCCCTTGTAGGGT
* * * *
38285395 AAAATGACAGTAATGCCCATGTATGCT
1 AAAATGACCGTAATGCCCTTGTAGGGT
38285422 AAAATGAC
1 AAAATGAC
38285430 GATTATGCCC
Statistics
Matches: 160, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
26 3 0.02
27 155 0.97
28 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
AAAATGACCGTAATGCCCTTGTAGGGT
Found at i:38285425 original size:81 final size:80
Alignment explanation
Indices: 38285206--38285441 Score: 256
Period size: 81 Copynumber: 2.9 Consensus size: 80
38285196 CCAAAATAGG
* * * * * ** *
38285206 AAAATGACCGTAATGCCCTTGTAGGGTAAAATGACCGTAATGCCTCTATAGGGTAAAATGGTCGT
1 AAAATGACCATAATACCCCTGTAGGGTAAAATGACAGTAATGCC-CTGTAGGGTAAAATGACCAT
* * * *
38285271 AATACCCCTGTAGGGT
65 AATGCCCTTGTAAGAT
* ** *
38285287 AAAATGACCATAATACCCCTGTAGGGTAAAATAATTGTAATGCCTTTGTAGGGTAAAATGACCAT
1 AAAATGACCATAATACCCCTGTAGGGTAAAATGACAGTAATGCC-CTGTAGGGTAAAATGACCAT
38285352 AATGCCCTTGTAAGAT
65 AATGCCCTTGTAAGAT
* * * *
38285368 AAAATGACCATAATACCCCTATAGGGTAAAATGACAGTAATGCCCATGTATGCTAAAATGACGAT
1 AAAATGACCATAATACCCCTGTAGGGTAAAATGACAGTAATGCCC-TGTAGGGTAAAATGACCAT
*
38285433 TATGCCCTT
65 AATGCCCTT
38285442 ATGTTTCGTA
Statistics
Matches: 130, Mismatches: 24, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
81 130 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (80 bp):
AAAATGACCATAATACCCCTGTAGGGTAAAATGACAGTAATGCCCTGTAGGGTAAAATGACCATA
ATGCCCTTGTAAGAT
Found at i:38288185 original size:15 final size:16
Alignment explanation
Indices: 38288165--38288195 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
38288155 TTGGTGCCTT
38288165 TTTGAT-ATGTGTTAA
1 TTTGATAATGTGTTAA
38288180 TTTGATAATGTGTTAA
1 TTTGATAATGTGTTAA
38288196 AGCATGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.19, T:0.52
Consensus pattern (16 bp):
TTTGATAATGTGTTAA
Found at i:38289455 original size:40 final size:40
Alignment explanation
Indices: 38289352--38289506 Score: 188
Period size: 40 Copynumber: 3.9 Consensus size: 40
38289342 ACAACTTTGA
*
38289352 TACCCCTGATTGCACT-TACGTGCCCCTGTTTATACTTTGG
1 TACCCCTGATTGCA-TATACGTGCCCCTGTTTATACTTCGG
* * *
38289392 TA-CCCTTATTGCATATACGTGCCCCTTTTTGTACTTCGG
1 TACCCCTGATTGCATATACGTGCCCCTGTTTATACTTCGG
* * * * *
38289431 TACCCCTGATTGCATATACTTGCCCTTATTTGTACTTCAG
1 TACCCCTGATTGCATATACGTGCCCCTGTTTATACTTCGG
* *
38289471 TACCCCTGATTGCACATATGTGCCCCTGTTTATACT
1 TACCCCTGATTGCATATACGTGCCCCTGTTTATACT
38289507 CCAATAACTC
Statistics
Matches: 98, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.34
40 64 0.65
ACGTcount: A:0.17, C:0.29, G:0.15, T:0.39
Consensus pattern (40 bp):
TACCCCTGATTGCATATACGTGCCCCTGTTTATACTTCGG
Found at i:38294864 original size:18 final size:18
Alignment explanation
Indices: 38294841--38294876 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
38294831 TGCAGAATAC
38294841 TTAGTTTCAAAAATGGAA
1 TTAGTTTCAAAAATGGAA
*
38294859 TTAGTTTCAGAAATGGAA
1 TTAGTTTCAAAAATGGAA
38294877 AATGGCAGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.19, T:0.33
Consensus pattern (18 bp):
TTAGTTTCAAAAATGGAA
Found at i:38311753 original size:28 final size:28
Alignment explanation
Indices: 38311721--38311788 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 28
38311711 AGTAAGTCCA
38311721 CACACTTAGTGCT-TA-ATAGTCAAACTCG
1 CACACTTAGTGCTATACA-A-TCAAACTCG
*
38311749 CACACTTAGTGCTATACAATTAAACTCG
1 CACACTTAGTGCTATACAATCAAACTCG
38311777 CACACTTAGTGC
1 CACACTTAGTGC
38311789 CAATCTCATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
28 33 0.89
29 3 0.08
30 1 0.03
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (28 bp):
CACACTTAGTGCTATACAATCAAACTCG
Found at i:38327009 original size:28 final size:27
Alignment explanation
Indices: 38326976--38327028 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
38326966 TTAGAATACT
*
38326976 TTAGTTTACTAAAATTACCGAAATACGC
1 TTAGTTT-CTAAAAATACCGAAATACGC
* *
38327004 TTAGTTTGTAAAAATACTGAAATAC
1 TTAGTTTCTAAAAATACCGAAATAC
38327029 CCTCGACTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (27 bp):
TTAGTTTCTAAAAATACCGAAATACGC
Found at i:38327015 original size:27 final size:27
Alignment explanation
Indices: 38326985--38327083 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
38326975 TTTAGTTTAC
*
38326985 TAAAATTACCGAAATACGCTTAG-TTTG
1 TAAAATTACCGAAATAC-CTTAGACTTG
* * * *
38327012 TAAAAATACTGAAATACCCTCGACTTG
1 TAAAATTACCGAAATACCTTAGACTTG
* *
38327039 TAAAATTACTGAAATACCTTCGACTTG
1 TAAAATTACCGAAATACCTTAGACTTG
38327066 TAAAATTACC-AAAGTACC
1 TAAAATTACCGAAA-TACC
38327084 CCCGATTTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.10
27 56 0.90
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.29
Consensus pattern (27 bp):
TAAAATTACCGAAATACCTTAGACTTG
Found at i:38327099 original size:27 final size:27
Alignment explanation
Indices: 38327069--38327129 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
38327059 CGACTTGTAA
*
38327069 AATTACCAAAGTACCCCCGATTTATAG
1 AATTACCAAAGTACCCCCGATTTACAG
*** *
38327096 AATTACCATTTTACCCCCGATTTACAT
1 AATTACCAAAGTACCCCCGATTTACAG
38327123 AATTACC
1 AATTACC
38327130 CTTTTAACCC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.34, C:0.28, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAGTACCCCCGATTTACAG
Found at i:38327134 original size:27 final size:27
Alignment explanation
Indices: 38327080--38327263 Score: 208
Period size: 27 Copynumber: 6.8 Consensus size: 27
38327070 ATTACCAAAG
* *
38327080 TACCCCCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * * *
38327107 TACCCCCGATTTACATAATTACCCTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* * *
38327134 TAACCC-CGATTTACATAATTATCGTTT
1 T-ACCCTCGATTTATAGAATTACCGTTT
*
38327161 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
38327188 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
38327215 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
* *
38327242 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
38327264 TAAAATACCC
Statistics
Matches: 138, Mismatches: 17, Indels: 4
0.87 0.11 0.03
Matches are distributed among these distances:
26 4 0.03
27 130 0.94
28 4 0.03
ACGTcount: A:0.29, C:0.23, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:38327272 original size:27 final size:27
Alignment explanation
Indices: 38327242--38327408 Score: 142
Period size: 27 Copynumber: 6.2 Consensus size: 27
38327232 ATTACTGTTT
* *
38327242 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTGCAAAATTACCAAAA
* * *
38327269 TACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTGCAAAATTACCAAAA
* *
38327296 TACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTGCAAAATTACCAAAA
* * ** **
38327323 TACCCTTGGTTTGTGAAATTACCGCAA
1 TACCCTCGATTTGCAAAATTACCAAAA
* *
38327350 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTCGATTTGCAAAATTACCAAAA
* *
38327377 TACCC-CTGATTTACAAAGTTA-CAAAA
1 TACCCTC-GATTTGCAAAATTACCAAAA
38327403 TACCCT
1 TACCCT
38327409 TGACTTTCTA
Statistics
Matches: 112, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
26 11 0.10
27 101 0.90
ACGTcount: A:0.38, C:0.23, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCCTCGATTTGCAAAATTACCAAAA
Found at i:38327273 original size:54 final size:54
Alignment explanation
Indices: 38327161--38327389 Score: 156
Period size: 54 Copynumber: 4.2 Consensus size: 54
38327151 ATTATCGTTT
* * * ****
38327161 TACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTATAGAATTACTGTTT
1 TACCCTTGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACTAAAA
** *
38327215 TACCCTTGATTTATAGAATTACTGTTTTACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACTAAAA
* * * *** * ** *
38327269 TACCCTTGGTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAGAATTACCATTTTACCCTC-AATTTACAAAATTACTAAAA
* * **** ** *
38327323 TACCCTTGGTTTGT-GAAATTACCGCAATACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAG-AATTACCATTTTACCCTCAATTTACAAAATTACTAAAA
*
38327377 TACCCCTGATTTA
1 TACCCTTGATTTA
38327390 CAAAGTTACA
Statistics
Matches: 142, Mismatches: 30, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
53 1 0.01
54 140 0.99
55 1 0.01
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (54 bp):
TACCCTTGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACTAAAA
Found at i:38327327 original size:81 final size:79
Alignment explanation
Indices: 38327242--38327493 Score: 204
Period size: 81 Copynumber: 3.1 Consensus size: 79
38327232 ATTACTGTTT
*
38327242 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTAGTT
1 TACCCTTGATTT-CAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-GTT
38327307 TGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
* ** *** *** *
38327323 TACCCTTGGTTTGTGAAATTACCGCAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATT
1 TACCCTTGATTT-CAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGTTT
38327388 -TACAAAGTTA-CAAAA
65 GTA-AAA-TTACCAAAA
* ** ** *
38327403 TACCCTTGACTTTCTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTG
1 TACCCTTGA-TTTC--AAAATTACTA-AAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-
* * *
38327467 GTTTGTAGATTTACCAAAG
61 GTTTGTAAAATTACCAAAA
*
38327486 CACCCTTG
1 TACCCTTG
38327494 TAGGATGAAA
Statistics
Matches: 130, Mismatches: 32, Indels: 16
0.73 0.18 0.09
Matches are distributed among these distances:
79 2 0.02
80 19 0.15
81 56 0.43
82 36 0.28
83 15 0.12
84 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.32
Consensus pattern (79 bp):
TACCCTTGATTTCAAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGTTTG
TAAAATTACCAAAA
Found at i:38327421 original size:54 final size:55
Alignment explanation
Indices: 38327256--38327493 Score: 198
Period size: 54 Copynumber: 4.4 Consensus size: 55
38327246 CTCGATTTAC
* ** * *
38327256 AAAATTACTAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCT-AGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGAATTTGT
*** ** *
38327310 AAAATTACCAAAATACCCTTGGTTTGTGAAATTACCGCAATACCC-TCAATTTGT
1 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGAATTTGT
* * * * *
38327364 AAAATTACCAAAATACCCCTGATTTACAAAGTTA-CAAAATACCCTTGACTTTCT
1 AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGAATTTGT
* * ** *
38327418 AAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAATACCCTTG-GTTTGT
1 -AAAATTACCA-AAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGAATTTGT
* * **
38327473 AGATTTACCAAAGCACCCTTG
1 AAAATTACCAAAATACCCTTG
38327494 TAGGATGAAA
Statistics
Matches: 147, Mismatches: 31, Indels: 12
0.77 0.16 0.06
Matches are distributed among these distances:
53 9 0.06
54 95 0.65
55 32 0.22
56 11 0.07
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (55 bp):
AAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTTGAATTTGT
Found at i:38327452 original size:27 final size:27
Alignment explanation
Indices: 38327419--38327470 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
38327409 TGACTTTCTA
38327419 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACT-GAAATACCATTGGTTTAC
*
38327446 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCATTGGTTT
38327471 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (27 bp):
AAAATTACTGAAATACCATTGGTTTAC
Found at i:38327554 original size:27 final size:27
Alignment explanation
Indices: 38327511--38327584 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
38327501 AAATGACTAA
*
38327511 AATACCCCTA-ACAGGTAAAAAGACCGT
1 AATACCCCTATA-GGGTAAAAAGACCGT
**
38327538 AA-AGCCCCTATAGGGTAAAGTGACCGT
1 AATA-CCCCTATAGGGTAAAAAGACCGT
* *
38327565 AATACCCCTGTATGGTAAAA
1 AATACCCCTATAGGGTAAAA
38327585 TGACGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 1 0.03
27 35 0.92
28 2 0.05
ACGTcount: A:0.39, C:0.23, G:0.19, T:0.19
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAAAGACCGT
Found at i:38327588 original size:27 final size:27
Alignment explanation
Indices: 38327524--38327588 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
38327514 ACCCCTAACA
*
38327524 GGTAAAAAGACCGTAAAGCCCCTATAG
1 GGTAAAATGACCGTAAAGCCCCTATAG
* * *
38327551 GGTAAAGTGACCGTAATA-CCCCTGTAT
1 GGTAAAATGACCGTAA-AGCCCCTATAG
38327578 GGTAAAATGAC
1 GGTAAAATGAC
38327589 GAATATGCCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 31 0.97
28 1 0.03
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (27 bp):
GGTAAAATGACCGTAAAGCCCCTATAG
Found at i:38328663 original size:25 final size:25
Alignment explanation
Indices: 38328634--38328681 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
38328624 TTATAACATG
* *
38328634 AAAATGAACATTTTGCCCCTAGGTA
1 AAAATGAACATTATACCCCTAGGTA
*
38328659 AAAATGACCATTATACCCCTAGG
1 AAAATGAACATTATACCCCTAGG
38328682 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGAACATTATACCCCTAGGTA
Found at i:38328747 original size:20 final size:20
Alignment explanation
Indices: 38328724--38328764 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
38328714 ATAAACATTG
38328724 TATGGATGATATGCACATGA
1 TATGGATGATATGCACATGA
*
38328744 TATGTATGATATGCACATGA
1 TATGGATGATATGCACATGA
38328764 T
1 T
38328765 GTATTCATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (20 bp):
TATGGATGATATGCACATGA
Found at i:38328812 original size:39 final size:39
Alignment explanation
Indices: 38328769--38328846 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
38328759 CATGATGTAT
38328769 TCATAAATGCATTGGGTTGGGTTTTTATATGAATGGAGG
1 TCATAAATGCATTGGGTTGGGTTTTTATATGAATGGAGG
38328808 TCATAAATGCATTGGGTTGGGTTTTTATATGAATGGAGG
1 TCATAAATGCATTGGGTTGGGTTTTTATATGAATGGAGG
38328847 AAGTGAAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.26, C:0.05, G:0.31, T:0.38
Consensus pattern (39 bp):
TCATAAATGCATTGGGTTGGGTTTTTATATGAATGGAGG
Found at i:38328884 original size:23 final size:23
Alignment explanation
Indices: 38328854--38328971 Score: 175
Period size: 23 Copynumber: 5.1 Consensus size: 23
38328844 AGGAAGTGAA
38328854 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
38328877 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* * *
38328900 AAAGGGTTTGTGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
38328923 AAAGGGCTTATG-CCCACTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
38328945 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
38328969 AAA
1 AAA
38328972 AGAGGCTAGG
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.10
23 67 0.80
24 9 0.11
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:38329221 original size:31 final size:30
Alignment explanation
Indices: 38329186--38329266 Score: 99
Period size: 31 Copynumber: 2.6 Consensus size: 30
38329176 CGTTTATAGT
*
38329186 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTT-GGCCCAGTAATATGAAATATGA
**
38329217 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGC-TTGGCCCAGTAATATGAAATATGA
38329248 AAAGGGCTATGGCCCAGTA
1 AAA-GGCT-TGGCCCAGTA
38329267 CATGTTTAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
31 29 0.67
32 14 0.33
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (30 bp):
AAAGGCTTGGCCCAGTAATATGAAATATGA
Found at i:38332779 original size:21 final size:21
Alignment explanation
Indices: 38332755--38332813 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
38332745 GTGGGGGTTT
*
38332755 ACACGCCCATGTGGAGGCCTC
1 ACACGCCCATGTGGAGGCCCC
* *
38332776 ACACGCCCATATGAAGGCCCC
1 ACACGCCCATGTGGAGGCCCC
*
38332797 ACACGCCCGTGTGGAGG
1 ACACGCCCATGTGGAGG
38332814 GGGCATAAGC
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (21 bp):
ACACGCCCATGTGGAGGCCCC
Found at i:38337075 original size:43 final size:43
Alignment explanation
Indices: 38337028--38337168 Score: 121
Period size: 43 Copynumber: 3.3 Consensus size: 43
38337018 TCCCAGATTT
*
38337028 GGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGACAA
1 GGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGACAA
* * * *
38337071 GGTCTTACACG-TAAC-CGATTAAT-GATGCCAATGTCCTAGACAT
1 GGTCTTACATGTTATCAC-A-T-ATCGATGCCAATGTCCCAGACAA
* * *
38337114 GATCTTACATGTAATCACA-ATACAATGCCAATGTCCCAGACATA
1 GGTCTTACATGTTATCACATAT-CGATGCCAATGTCCCAGACA-A
*
38337158 -GTCTTATATGT
1 GGTCTTACATGT
38337169 AATCTCATCT
Statistics
Matches: 76, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
41 3 0.04
42 4 0.05
43 63 0.83
44 5 0.07
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
GGTCTTACATGTTATCACATATCGATGCCAATGTCCCAGACAA
Found at i:38342326 original size:49 final size:49
Alignment explanation
Indices: 38342262--38342493 Score: 248
Period size: 49 Copynumber: 4.7 Consensus size: 49
38342252 CTGGTACGCA
* * * *
38342262 TAGTAGCATGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGATACACG
* **
38342311 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCTGATACACG
** * * * * *
38342361 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCAGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCTGATACACG
* * * * *
38342412 TAGTAGCTTGCACTTAGTACTACACATGCAACCAATTATTTGATTCACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGATACACG
* *
38342461 TAGTAGCCTACACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGCGACC
38342494 TCACAATAGC
Statistics
Matches: 148, Mismatches: 32, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
49 66 0.45
50 47 0.32
51 35 0.24
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCTGATACACG
Found at i:38342425 original size:101 final size:98
Alignment explanation
Indices: 38342262--38342487 Score: 272
Period size: 100 Copynumber: 2.3 Consensus size: 98
38342252 CTGGTACGCA
* ** * *
38342262 TAGTAGCATGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
**
38342327 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCAACC-AACCATCTGATACACG
* * * *
38342361 TAGTAGCCTGCACTTAGTACTACACACATGATCGAAGTTATCAGGTACGCATAGTAGCTTGCACT
1 TAGTAGCCTGCACTTAGTACTACACACACGA-CCAA-TTATCAGGTACACATAGTAGCCTGCACT
* ** * *
38342426 TAGTACTACACATGCAACCAATTATTTGATTCACG
64 TAGTACTACACACGCAACCAACCATCTGATACACG
*
38342461 TAGTAGCCTACACTTAGTACTACACAC
1 TAGTAGCCTGCACTTAGTACTACACAC
38342488 GTGACCTCAC
Statistics
Matches: 108, Mismatches: 17, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
99 27 0.25
100 41 0.38
101 40 0.37
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATCAGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCAACCAACCATCTGATACACG
Found at i:38344430 original size:30 final size:30
Alignment explanation
Indices: 38344394--38344454 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
38344384 CATTTAATAC
38344394 AAACTTTGGAAAAATTACA-TTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTT-CCCCT
* * *
38344424 AAACTTTTGCATAATTACACTTTTTCCCCT
1 AAACTTTGGAAAAATTACACTTTTTCCCCT
38344454 A
1 A
38344455 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTTCCCCT
Found at i:38353102 original size:47 final size:47
Alignment explanation
Indices: 38353047--38353336 Score: 418
Period size: 47 Copynumber: 6.1 Consensus size: 47
38353037 TTAGGATTTT
** * * * *
38353047 AATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCA
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*** *
38353094 AATGTGATGAATGTGAACCTGTATATATATGCGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAA-C---ATGCGTATGTGTGATAAGGCCGAATGGCC
* *
38353145 AATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGAC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
38353192 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*
38353239 AATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
*
38353286 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCT
1 AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
38353333 AATG
1 AATG
38353337 CGAAATGTGT
Statistics
Matches: 220, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
47 180 0.82
50 1 0.00
51 39 0.18
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.26
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCC
Found at i:38353378 original size:46 final size:46
Alignment explanation
Indices: 38353322--38353445 Score: 185
Period size: 46 Copynumber: 2.7 Consensus size: 46
38353312 GTGTGATAAG
38353322 GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGGTAAA
1 GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGGTAAA
* * *
38353368 GCCGAATGGCTAATGCGAAACGTGTATGAGATGGATATGTGGTAAA
1 GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGGTAAA
* * * *
38353414 GCCAAATGGCTAATGTGAGATATGTATGAGAT
1 GCCGAATGGCTAATGCGAAATGTGTATGAGAT
38353446 GTGTATATAT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.25
Consensus pattern (46 bp):
GCCGAATGGCTAATGCGAAATGTGTATGAGATAGATATGAGGTAAA
Found at i:38353408 original size:141 final size:140
Alignment explanation
Indices: 38353120--38353391 Score: 342
Period size: 141 Copynumber: 1.9 Consensus size: 140
38353110 ACCTGTATAT
*
38353120 ATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCG
* * * * *
38353185 AATGGACAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAA
66 AATGGACAATGCGA-GAATGTGAACATGCATATGAGTGATAAAGCCGAATGGCCAATGCGA-GAA
*
38353250 TGTGAACACGCG
129 CGTGAACACGCG
*
38353262 -TATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCG
1 ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCG
* *
38353326 AATGG-CTAATGCGA-AATGTGTATGAGATAG-ATATGAG-G-TAAAGCCGAATGGCTAATGCGA
66 AATGGAC-AATGCGAGAATGTG-A--ACAT-GCATATGAGTGATAAAGCCGAATGGCCAATGCGA
38353386 -AACGTG
126 GAACGTG
38353392 TATGAGATGG
Statistics
Matches: 115, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
138 5 0.04
139 6 0.05
140 21 0.18
141 74 0.64
142 8 0.07
143 1 0.01
ACGTcount: A:0.32, C:0.13, G:0.32, T:0.24
Consensus pattern (140 bp):
ATATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACACGCGTATGTGTGATAAGGCCG
AATGGACAATGCGAGAATGTGAACATGCATATGAGTGATAAAGCCGAATGGCCAATGCGAGAACG
TGAACACGCG
Found at i:38353659 original size:37 final size:37
Alignment explanation
Indices: 38353629--38353739 Score: 186
Period size: 37 Copynumber: 3.0 Consensus size: 37
38353619 GTGGTGACTA
*
38353629 TGTCCGGGTAAGACCCGATGATTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
*
38353666 TTTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
* *
38353703 TGTCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
38353740 CATCTGAGCT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.30
Consensus pattern (37 bp):
TGTCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
Found at i:38356234 original size:30 final size:30
Alignment explanation
Indices: 38356200--38356260 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 30
38356190 CTTTAATACG
38356200 AAAC-TTTGACAAAATTACA-TTTTTGCCCCT
1 AAACTTTTG-CAAAATTACACTTTTT-CCCCT
*
38356230 AAACTTTTGCATAATTACACTTTTTCCCCT
1 AAACTTTTGCAAAATTACACTTTTTCCCCT
38356260 A
1 A
38356261 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
30 19 0.68
31 9 0.32
ACGTcount: A:0.31, C:0.25, G:0.05, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACTTTTTCCCCT
Found at i:38370813 original size:30 final size:30
Alignment explanation
Indices: 38370777--38370834 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
38370767 CATTTAATAC
*
38370777 AAAC-TTTGACAAAATTACATTTTTCCCCCT
1 AAACTTTTG-CAAAATTACACTTTTCCCCCT
*
38370807 AAACTTTTGCATAATTACACTTTTCCCC
1 AAACTTTTGCAAAATTACACTTTTCCCC
38370835 TAGGCTCGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.31, C:0.28, G:0.03, T:0.38
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACTTTTCCCCCT
Found at i:38372803 original size:16 final size:15
Alignment explanation
Indices: 38372777--38372806 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
38372767 ACTAGATCAG
38372777 CGAAAGCCGAAAAGC
1 CGAAAGCCGAAAAGC
38372792 CGAAATGCCGAAAAG
1 CGAAA-GCCGAAAAG
38372807 TTAGTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.23, G:0.27, T:0.03
Consensus pattern (15 bp):
CGAAAGCCGAAAAGC
Found at i:38373264 original size:27 final size:26
Alignment explanation
Indices: 38373224--38373330 Score: 119
Period size: 27 Copynumber: 4.0 Consensus size: 26
38373214 AGGAAGCGTC
*
38373224 CTGGTGGCTA-TGCCACAATTATTTGATT
1 CTGGTGGC-ACTGCCAC-ATTATCTG-TT
38373252 -TGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAT-TATCTGTT
*
38373278 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCACTGCCAC-ATTATCTGTT
* *
38373305 CTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCACTGCCACATTATCTGTT
38373331 ATCACAGCCA
Statistics
Matches: 70, Mismatches: 5, Indels: 10
0.82 0.06 0.12
Matches are distributed among these distances:
26 15 0.21
27 53 0.76
28 2 0.03
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCACTGCCACATTATCTGTT
Found at i:38373310 original size:54 final size:53
Alignment explanation
Indices: 38373224--38373330 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 53
38373214 AGGAAGCGTC
* *
38373224 CTGGTGGCTATGCCACAATTATTTGATTTGGTGGCACTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATTTGGTGACACTGCCACAT-TATCTGTT
* *
38373278 CTGGTGGCTCTGCCACAATTATCTG-TTCTGGTGACACTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATT-TGGTGACACTGCCACATTATCTGTT
38373331 ATCACAGCCA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
53 10 0.21
54 38 0.79
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATTTGGTGACACTGCCACATTATCTGTT
Found at i:38375676 original size:37 final size:37
Alignment explanation
Indices: 38375623--38375725 Score: 172
Period size: 37 Copynumber: 2.8 Consensus size: 37
38375613 CGAATAGTCC
*
38375623 CCACACGTAGTTATCGGGTCTTACCCGGACA-AGATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATA-ATCT
38375660 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
*
38375697 CCAAACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
38375726 ATATATTTCC
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 62 0.98
38 1 0.02
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.23
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:38375927 original size:48 final size:48
Alignment explanation
Indices: 38375866--38376386 Score: 970
Period size: 48 Copynumber: 10.9 Consensus size: 48
38375856 ATATACACAC
*
38375866 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
38375914 ATCTCATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
38375962 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
38376010 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
38376058 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
38376106 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
38376154 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * *
38376202 ATCTCATATATATTTCACATTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
38376250 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
38376298 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
38376346 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACA
38376387 CACATATATA
Statistics
Matches: 462, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 462 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:38383799 original size:28 final size:27
Alignment explanation
Indices: 38383705--38383814 Score: 125
Period size: 27 Copynumber: 4.0 Consensus size: 27
38383695 TGGCTGTCAG
* *
38383705 AACAGATATTGTGACAGAGTCACCA-A
1 AACAGATATTGTGGCAGAGCCACCAGA
*
38383731 ATACAGATATTGTGGTAGAGCCACCAG-
1 A-ACAGATATTGTGGCAGAGCCACCAGA
*
38383758 AACAGATATCTGTGGCATAGCCACCAGA
1 AACAGATAT-TGTGGCAGAGCCACCAGA
* *
38383786 AACAGATAATTGTGGCATAGCCACTAGA
1 AACAGAT-ATTGTGGCAGAGCCACCAGA
38383814 A
1 A
38383815 CGCTTCCTCC
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 9 0.12
27 37 0.51
28 25 0.34
29 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (27 bp):
AACAGATATTGTGGCAGAGCCACCAGA
Found at i:38383808 original size:55 final size:53
Alignment explanation
Indices: 38383702--38383815 Score: 140
Period size: 55 Copynumber: 2.1 Consensus size: 53
38383692 GCATGGCTGT
* *
38383702 CAGAACAGATATTGTGACAGAGTCACCAAATACAGATATTGTGGTAGAGCCAC
1 CAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTGTGGCAGAGCCAC
* * *
38383755 CAGAACAGATATCTGTGGCATAGCCACCAGAA-ACAGATAATTGTGGCATAGCCAC
1 CAGAACAGATAT-TGTGACAGAGCCACCA-AATACAGAT-ATTGTGGCAGAGCCAC
*
38383810 TAGAAC
1 CAGAAC
38383816 GCTTCCTCCA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 12 0.23
54 19 0.37
55 21 0.40
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.19
Consensus pattern (53 bp):
CAGAACAGATATTGTGACAGAGCCACCAAATACAGATATTGTGGCAGAGCCAC
Found at i:38383975 original size:25 final size:26
Alignment explanation
Indices: 38383927--38383979 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
38383917 CCCAGTGGTA
*
38383927 TAATGGTAATTTTGCATACTTAGGGG
1 TAATGGTAATTCTGCATACTTAGGGG
38383953 TAATGGTAATTCT-CATACTTAGGGG
1 TAATGGTAATTCTGCATACTTAGGGG
38383978 TA
1 TA
38383980 TTTTAGTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.28, C:0.09, G:0.25, T:0.38
Consensus pattern (26 bp):
TAATGGTAATTCTGCATACTTAGGGG
Found at i:38388549 original size:15 final size:15
Alignment explanation
Indices: 38388529--38388558 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
38388519 TGGCACATTA
*
38388529 TGGTATTGATATGGT
1 TGGTATTGAAATGGT
38388544 TGGTATTGAAATGGT
1 TGGTATTGAAATGGT
38388559 ATGAATTATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.43
Consensus pattern (15 bp):
TGGTATTGAAATGGT
Found at i:38401598 original size:27 final size:27
Alignment explanation
Indices: 38401568--38401686 Score: 211
Period size: 27 Copynumber: 4.4 Consensus size: 27
38401558 ATTACCAAAG
38401568 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
38401595 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
38401622 TACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCGTTT
*
38401649 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTT
38401676 TACCCTCGATT
1 TACCCTCGATT
38401687 GTGAAATTAC
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 87 1.00
ACGTcount: A:0.28, C:0.23, G:0.09, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCGTTT
Found at i:38401600 original size:54 final size:54
Alignment explanation
Indices: 38401541--38401686 Score: 211
Period size: 54 Copynumber: 2.7 Consensus size: 54
38401531 ATTATTGAAA
* * * ***
38401541 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
* * *
38401595 TACCCTCAATTTATAGAATTACCGTTTTACCATCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
38401649 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
38401687 GTGAAATTAC
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTT
Found at i:38401708 original size:27 final size:27
Alignment explanation
Indices: 38401685--38401816 Score: 117
Period size: 27 Copynumber: 4.9 Consensus size: 27
38401675 TTACCCTCGA
**
38401685 TTGTGAAATTACTGAAATACCCCT-GT
1 TTGTGAAATTACCAAAATACCCCTAGT
**
38401711 AGGATAGAA-TTACCAAAATACCCCTAGT
1 TTG-T-GAAATTACCAAAATACCCCTAGT
* *
38401739 TTGTAAAATTACCAAAATACCACTAGT
1 TTGTGAAATTACCAAAATACCCCTAGT
* *
38401766 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTGAAATTACCAAAATACCCCT-AGT
* * *
38401793 TTGTAAAATTATCAAAATGCCCCT
1 TTGTGAAATTACCAAAATACCCCT
38401817 GATTTACAAA
Statistics
Matches: 84, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
26 6 0.07
27 68 0.81
28 10 0.12
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (27 bp):
TTGTGAAATTACCAAAATACCCCTAGT
Found at i:38401821 original size:27 final size:27
Alignment explanation
Indices: 38401718--38401816 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
38401708 TGTAGGATAG
38401718 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
38401745 AATTACCAAAATACCACTAGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
38401772 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* *
38401799 AATTATCAAAATGCCCCT
1 AATTACCAAAATACCCCT
38401817 GATTTACAAA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 3 0.05
27 54 0.89
28 4 0.07
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:38401829 original size:54 final size:55
Alignment explanation
Indices: 38401718--38401898 Score: 156
Period size: 54 Copynumber: 3.3 Consensus size: 55
38401708 TGTAGGATAG
* * ***
38401718 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAGTTTACAA
* * *
38401772 AATTACCGAAATACCCTC-AATTTGTAAAATTATCAAAATGCCCCT-GATTTACAA
1 AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAG-TTTACAA
* * * * * *
38401826 AATTACAGAAAAACCCT-TGACTTTCTAAAAATTA-TAGAAATACCATTAGTTTACAA
1 AATTACCGAAATACCCTCT-AATTTGT-AAAATTACCA-AAATACCACTAGTTTACAA
*
38401882 AATTACTGAAATACCCT
1 AATTACCGAAATACCCT
38401899 TGTTTTGTAG
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
53 1 0.01
54 57 0.56
55 7 0.07
56 36 0.35
57 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (55 bp):
AATTACCGAAATACCCTCTAATTTGTAAAATTACCAAAATACCACTAGTTTACAA
Found at i:38401988 original size:27 final size:27
Alignment explanation
Indices: 38401945--38402018 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
38401935 AAATGACTAA
* *
38401945 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCAT
**
38401972 AA-AGCCCCTGTAGGGTAAAGTGACCAT
1 AATA-CCCCTGTAGGGTAAAAAGACCAT
*
38401999 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
38402019 TGATGAATAT
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.08
27 34 0.89
28 1 0.03
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCAT
Found at i:38402860 original size:25 final size:25
Alignment explanation
Indices: 38402832--38402901 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
38402822 AGGTAGTGCT
* * *
38402832 AAAAGGACTATGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCTAGTTTACCA
* *
38402857 AAAAGGGTTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
*
38402882 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCTAGTT
38402902 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:38403155 original size:30 final size:31
Alignment explanation
Indices: 38403121--38403203 Score: 107
Period size: 31 Copynumber: 2.7 Consensus size: 31
38403111 CGCTTACAGT
38403121 AAAGGCTTCAG-CCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
* **
38403151 AAAGGTTTTGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCAGCCCAGTGATATGATTTATGA
**
38403182 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
38403204 TCGAGACTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
30 13 0.27
31 35 0.73
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGATTTATGA
Found at i:38403167 original size:31 final size:31
Alignment explanation
Indices: 38403132--38403203 Score: 128
Period size: 31 Copynumber: 2.4 Consensus size: 31
38403122 AAGGCTTCAG
*
38403132 CCAGTGATATGATTTATGAAAAGGTTTTGGC
1 CCAGTGATATGATTTATGAAAAGGCTTTGGC
38403163 CCAGTGATATGATTTATGAAAAGGCTTTGGC
1 CCAGTGATATGATTTATGAAAAGGCTTTGGC
38403194 CCAGT-ATATG
1 CCAGTGATATG
38403204 TCGAGACTGA
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
30 5 0.12
31 35 0.88
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.33
Consensus pattern (31 bp):
CCAGTGATATGATTTATGAAAAGGCTTTGGC
Found at i:38406495 original size:41 final size:41
Alignment explanation
Indices: 38406391--38406685 Score: 236
Period size: 41 Copynumber: 7.2 Consensus size: 41
38406381 CTTAGTTATT
** * * * * *
38406391 CCTTGAATTGCACGTACGTACCCTTATTTATACTTCAGTAC
1 CCTTGAATTGCATATACGTGCCCCTGTTTGTACTTCGGTAC
* * *
38406432 CCTTGAATTGCACATACATGCCCATGTTTGTACTTCGGTAC
1 CCTTGAATTGCATATACGTGCCCCTGTTTGTACTTCGGTAC
* * *
38406473 CCTTGAATTGCATATATGTGCCCCTTTTTGTACTTCGGCAC
1 CCTTGAATTGCATATACGTGCCCCTGTTTGTACTTCGGTAC
* ** ** * *
38406514 CCCTGAATTGTGTATTTGTGCCCCTTTTTGTACTTCAGTAC
1 CCTTGAATTGCATATACGTGCCCCTGTTTGTACTTCGGTAC
* * *
38406555 TAC-AGAATTGCATATACGTGCCCTTGTTTGTACTTCGGTAC
1 -CCTTGAATTGCATATACGTGCCCCTGTTTGTACTTCGGTAC
* * * * *
38406596 CCTTGAATTGCACATGCATGCCCTTGTTTGTACTTTGGTAC
1 CCTTGAATTGCATATACGTGCCCCTGTTTGTACTTCGGTAC
* * ** * *
38406637 CCCTGAATAT-CACT-TACGTGACCCTGTTTACACTTTGGTAA
1 CCTTGAAT-TGCA-TATACGTGCCCCTGTTTGTACTTCGGTAC
38406678 CCTTGAAT
1 CCTTGAAT
38406686 CAAGTAAAAT
Statistics
Matches: 206, Mismatches: 44, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
40 1 0.00
41 203 0.99
42 2 0.01
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (41 bp):
CCTTGAATTGCATATACGTGCCCCTGTTTGTACTTCGGTAC
Found at i:38406655 original size:82 final size:83
Alignment explanation
Indices: 38406394--38406685 Score: 265
Period size: 82 Copynumber: 3.6 Consensus size: 83
38406384 AGTTATTCCT
** * * *
38406394 TGAATTGCACGTACGT-ACCCTTATTTATACTTCAGTACCCTTGAATTGCACATACATGCCCATG
1 TGAATTGCATATACGTGACCCTTGTTTATACTTCGGTACCCTTGAATTGCACATACATGCCCTTG
*
38406458 TTTGTACTTCGGTACCCT
66 TTTGTACTTCGGTACCCC
* * * * * *** ***
38406476 TGAATTGCATATATGTGCCCCTT-TTTGTACTTCGGCACCCCTGAATTGTGTATTTGTGCCCCTT
1 TGAATTGCATATACGTGACCCTTGTTTATACTTCGGTACCCTTGAATTGCACATACATG-CCCTT
* **
38406540 -TTTGTACTTCAGTACTAC
65 GTTTGTACTTCGGTACCCC
* * *
38406558 AGAATTGCATATACGTG-CCCTTGTTTGTACTTCGGTACCCTTGAATTGCACATGCATGCCCTTG
1 TGAATTGCATATACGTGACCCTTGTTTATACTTCGGTACCCTTGAATTGCACATACATGCCCTTG
*
38406622 TTTGTACTTTGGTACCCC
66 TTTGTACTTCGGTACCCC
* * *
38406640 TGAATAT-CACT-TACGTGACCC-TGTTTACACTTTGGTAACCTTGAAT
1 TGAAT-TGCA-TATACGTGACCCTTGTTTATACTTCGGTACCCTTGAAT
38406686 CAAGTAAAAT
Statistics
Matches: 165, Mismatches: 38, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
81 10 0.06
82 141 0.85
83 14 0.08
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.38
Consensus pattern (83 bp):
TGAATTGCATATACGTGACCCTTGTTTATACTTCGGTACCCTTGAATTGCACATACATGCCCTTG
TTTGTACTTCGGTACCCC
Found at i:38412823 original size:48 final size:48
Alignment explanation
Indices: 38412762--38412983 Score: 300
Period size: 48 Copynumber: 4.6 Consensus size: 48
38412752 GTAACCGTGC
* * *
38412762 AAGACCATGTCTGGGACATGGCATTGACATTGCTACATGAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATTGGCATTGTTACGTGAGCCAGTGT
* * * *
38412810 AAGACCATATCTGGGACATGGCATTTGCATTGTTATGTGAGCCAGTAT
1 AAGACCATGTCTGGGACATGGCATTGGCATTGTTACGTGAGCCAGTGT
*
38412858 AAGACCATGTCTGGGATATGGCATTGGCATTGTTACGTGAGCCAGTGT
1 AAGACCATGTCTGGGACATGGCATTGGCATTGTTACGTGAGCCAGTGT
* * * * * *
38412906 AAGACCCTGTCAGGGACATGGCATCGGCATCGTTATGTGAGACAGTGT
1 AAGACCATGTCTGGGACATGGCATTGGCATTGTTACGTGAGCCAGTGT
* *
38412954 AAGACCATGTATGGGACATGGCATCGGCAT
1 AAGACCATGTCTGGGACATGGCATTGGCAT
38412984 GAAGCATCGT
Statistics
Matches: 152, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 152 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
AAGACCATGTCTGGGACATGGCATTGGCATTGTTACGTGAGCCAGTGT
Found at i:38416010 original size:18 final size:18
Alignment explanation
Indices: 38415987--38416023 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
38415977 AAACACAGAA
38415987 CTCCTTTAGAGTTAAACC
1 CTCCTTTAGAGTTAAACC
38416005 CTCCTTTAGAGTTAAACC
1 CTCCTTTAGAGTTAAACC
38416023 C
1 C
38416024 CAAATCTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (18 bp):
CTCCTTTAGAGTTAAACC
Found at i:38425577 original size:40 final size:40
Alignment explanation
Indices: 38425495--38425715 Score: 254
Period size: 40 Copynumber: 5.6 Consensus size: 40
38425485 TATTCGGATG
* * *
38425495 ATATCCGAGCTAAGTCCCGAAGGCA-TGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
38425534 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* *
38425574 ATATTCGGGCTAAGTCCCGAAGGC-GTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
38425614 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * * **
38425654 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGGGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGC-TATTGACT
*
38425694 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
38425716 TACTTGGGTT
Statistics
Matches: 158, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
39 41 0.26
40 112 0.71
41 5 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:38425635 original size:80 final size:79
Alignment explanation
Indices: 38425503--38425715 Score: 288
Period size: 80 Copynumber: 2.7 Consensus size: 79
38425493 TGATATCCGA
* * *
38425503 GCTAAGTCCCGAAGGCATGGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCT
1 GCTAAGTCCCGAAGGCTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCT
*
38425567 ATTGACTATAT-TCGG
65 AGTGACTATATCT-GG
**
38425582 GCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCT
1 GCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCT
38425647 AGTGACTATATCTGG
65 AGTGACTATATCTGG
* * *
38425662 GCTAAGACCCGAAGGCATTTGTGCGGGTTGCTATATCC-GGCTAAATCCCGAAGG
1 GCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
38425716 TACTTGGGTT
Statistics
Matches: 121, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
79 31 0.26
80 87 0.72
81 3 0.02
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (79 bp):
GCTAAGTCCCGAAGGCTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA
GTGACTATATCTGG
Found at i:38434119 original size:38 final size:39
Alignment explanation
Indices: 38434000--38434178 Score: 220
Period size: 40 Copynumber: 4.6 Consensus size: 39
38433990 TATTCGGATG
* * *
38434000 ATATCCGGGGTAAGTCCCGAACGCATGGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTAGTGACT
*
38434039 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAGTGACT
* *
38434079 ATATCCGGGCTAAGTCTCGAAGGC-TTTTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTAGTGACT
* **
38434117 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGGGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTGTGCTAG-TGACT
*
38434157 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
38434179 TACTTGGGTT
Statistics
Matches: 122, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
38 34 0.28
39 37 0.30
40 49 0.40
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTGTGCTAGTGACT
Found at i:38434130 original size:78 final size:79
Alignment explanation
Indices: 38434000--38434178 Score: 238
Period size: 78 Copynumber: 2.3 Consensus size: 79
38433990 TATTCGGATG
* * *
38434000 ATATCCGGGGTAAGTCCCGAACGCATGGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAG
1 ATATCCGGGCTAAGTCCCGAAGGCATGGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAG
*
38434065 TTGTGC-TATTGACT
66 TTGTGCGGATTG-CT
* ** *
38434079 ATATCCGGGCTAAGTCTCGAAGGC-TTTTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAT
1 ATATCCGGGCTAAGTCCCGAAGGCATGGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAG
*
38434143 TTGTGCGGGTTGCT
66 TTGTGCGGATTGCT
*
38434157 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
38434179 TACTTGGGTT
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
77 14 0.16
78 50 0.57
79 24 0.27
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCATGGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCAG
TTGTGCGGATTGCT
Found at i:38452311 original size:40 final size:41
Alignment explanation
Indices: 38452256--38452351 Score: 126
Period size: 40 Copynumber: 2.4 Consensus size: 41
38452246 TATCTCGGTA
38452256 TCGCACACTTAGTGCC-TCATATAGCCGAAGCCA-TTCCAAC
1 TCGCACACTTAGTGCCAT-ATATAGCCGAAGCCATTTCCAAC
* * * *
38452296 TCGCACACTTAGTGCCATTTGTAGCCGAAGCTATTTCGAAC
1 TCGCACACTTAGTGCCATATATAGCCGAAGCCATTTCCAAC
38452337 -CGCACACTTAGTGCC
1 TCGCACACTTAGTGCC
38452352 GAACATAGTT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 43 0.86
41 7 0.14
ACGTcount: A:0.25, C:0.32, G:0.18, T:0.25
Consensus pattern (41 bp):
TCGCACACTTAGTGCCATATATAGCCGAAGCCATTTCCAAC
Found at i:38453432 original size:27 final size:27
Alignment explanation
Indices: 38453400--38453501 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
38453390 TACCCTACAT
*
38453400 GGGTATTTCGATAATTTTACACAAT-AA
1 GGGTATTTCGGTAATTTTACA-AATCAA
* * *
38453427 GTGTATTTGGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCAA
*
38453454 GGGTATTTCGGTAATTTTACAAA-CCA
1 GGGTATTTCGGTAATTTTACAAATCAA
**
38453480 GGGTATTTTAGTAATTTTACAA
1 GGGTATTTCGGTAATTTTACAA
38453502 TTCGGGGTCG
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
26 25 0.38
27 40 0.62
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCAA
Found at i:38456420 original size:33 final size:32
Alignment explanation
Indices: 38456375--38456469 Score: 101
Period size: 33 Copynumber: 3.0 Consensus size: 32
38456365 TGAAAAACAA
38456375 TCTGGGCTTTAGCCCTATACAGTATCAGTACAG
1 TCTGGGC-TTAGCCCTATACAGTATCAGTACAG
38456408 TCTGGGTCTTAGCCCTATACA--AT-A--ACAG
1 TCTGGG-CTTAGCCCTATACAGTATCAGTACAG
* * *
38456436 TGTGGGCCTAAGCCCAATACAGTATCAGTACAG
1 TCTGGG-CTTAGCCCTATACAGTATCAGTACAG
38456469 T
1 T
38456470 GTAATGCAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
28 21 0.40
30 3 0.06
31 3 0.06
33 24 0.46
34 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (32 bp):
TCTGGGCTTAGCCCTATACAGTATCAGTACAG
Found at i:38456464 original size:28 final size:27
Alignment explanation
Indices: 38456400--38456464 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 27
38456390 TATACAGTAT
* * *
38456400 CAGTACAGTCTGGGTCTTAGCCCTATA
1 CAGTACAGTCTGGGCCTAAGCCCAATA
* *
38456427 CAATAACAGTGTGGGCCTAAGCCCAATA
1 CAGT-ACAGTCTGGGCCTAAGCCCAATA
38456455 CAGTATCAGT
1 CAGTA-CAGT
38456465 ACAGTGTAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
27 4 0.13
28 26 0.87
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (27 bp):
CAGTACAGTCTGGGCCTAAGCCCAATA
Found at i:38456990 original size:27 final size:26
Alignment explanation
Indices: 38456916--38456991 Score: 107
Period size: 27 Copynumber: 2.8 Consensus size: 26
38456906 ACCCTATATT
* *
38456916 GGTATTTTAGTAATTTTACACTACAAG
1 GGTATTTTGGTAATTTTACA-AACAAG
*
38456943 GGTATTTGGGTAATTTTACAAACTAAG
1 GGTATTTTGGTAATTTTACAAAC-AAG
38456970 GGTATTTTGGTAATTTTACAAA
1 GGTATTTTGGTAATTTTACAAA
38456992 TCGGGGATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 2 0.05
27 42 0.95
ACGTcount: A:0.33, C:0.08, G:0.18, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAACAAG
Found at i:38472314 original size:22 final size:22
Alignment explanation
Indices: 38472279--38472321 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
38472269 CCCACATTTT
38472279 ACATTTATTCACACTTTACAAC
1 ACATTTATTCACACTTTACAAC
38472301 ACATTT-TTCAACACTTTACAA
1 ACATTTATTC-ACACTTTACAA
38472322 ATAAGTCCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.37, C:0.26, G:0.00, T:0.37
Consensus pattern (22 bp):
ACATTTATTCACACTTTACAAC
Found at i:38476819 original size:30 final size:30
Alignment explanation
Indices: 38476763--38476853 Score: 85
Period size: 30 Copynumber: 3.0 Consensus size: 30
38476753 AGCCCGAACG
* * **
38476763 GTAACCTTGTTATAATTTCATCTTGTGTGA
1 GTAACCTTGATATAATGTCAGATTGTGTGA
*
38476793 GTAACCTTGATATAATGTCAGATTGTGTAA
1 GTAACCTTGATATAATGTCAGATTGTGTGA
* * * *
38476823 GCAACCCTAATATAATGT-TGACTTGTGTGA
1 GTAACCTTGATATAATGTCAGA-TTGTGTGA
38476853 G
1 G
38476854 CAACTTAGTC
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
29 2 0.04
30 48 0.96
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (30 bp):
GTAACCTTGATATAATGTCAGATTGTGTGA
Found at i:38476856 original size:30 final size:31
Alignment explanation
Indices: 38476784--38476857 Score: 89
Period size: 30 Copynumber: 2.5 Consensus size: 31
38476774 ATAATTTCAT
* * *
38476784 CTTGTGTGAGTAACCTTGATATAATGTCAGA
1 CTTGTGTGAGCAACCCTAATATAATGTCAGA
* *
38476815 -TTGTGTAAGCAACCCTAATATAATGT-TGA
1 CTTGTGTGAGCAACCCTAATATAATGTCAGA
38476844 CTTGTGTGAGCAAC
1 CTTGTGTGAGCAAC
38476858 TTAGTCACCC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
29 2 0.06
30 34 0.94
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.34
Consensus pattern (31 bp):
CTTGTGTGAGCAACCCTAATATAATGTCAGA
Found at i:38479780 original size:22 final size:22
Alignment explanation
Indices: 38479726--38479780 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
38479716 AATTTAAAAC
* * *
38479726 AATATTTTATATATGAAATAAT
1 AATATTTTATAAATAAAAGAAT
* **
38479748 AATGTACTATAAATAAAAGAAT
1 AATATTTTATAAATAAAAGAAT
38479770 AATATTTTATA
1 AATATTTTATA
38479781 TATTTATTAT
Statistics
Matches: 24, Mismatches: 9, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (22 bp):
AATATTTTATAAATAAAAGAAT
Found at i:38481240 original size:16 final size:18
Alignment explanation
Indices: 38481204--38481241 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
38481194 ATCTTTATTT
*
38481204 AAATAAAATACAATGGTA
1 AAATAAAATACAATCGTA
38481222 AAATAAAATA-AA-CGTA
1 AAATAAAATACAATCGTA
38481238 AAAT
1 AAAT
38481242 CCATATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 7 0.37
17 2 0.11
18 10 0.53
ACGTcount: A:0.66, C:0.05, G:0.08, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATCGTA
Found at i:38489887 original size:20 final size:21
Alignment explanation
Indices: 38489849--38489887 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
38489839 ATTAAATTTT
*
38489849 AATATTAAAAATTAGAAAACA
1 AATATTAAAAATAAGAAAACA
*
38489870 AATA-TAAAAATAATAAAA
1 AATATTAAAAATAAGAAAA
38489888 TATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (21 bp):
AATATTAAAAATAAGAAAACA
Found at i:38489894 original size:18 final size:19
Alignment explanation
Indices: 38489871--38489953 Score: 68
Period size: 19 Copynumber: 4.5 Consensus size: 19
38489861 TAGAAAACAA
38489871 ATATAAAAATAATAAAA-T
1 ATATAAAAATAATAAAAGT
** *
38489889 ATATAAAAATTGTAAAATT
1 ATATAAAAATAATAAAAGT
* *
38489908 TTATAAAAATCATAAAAGT
1 ATATAAAAATAATAAAAGT
38489927 -TAT-AAAATATATAGAAA-T
1 ATATAAAAATA-ATA-AAAGT
38489945 ATA-AAAAAT
1 ATATAAAAAT
38489954 TATAGAATTT
Statistics
Matches: 53, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
17 5 0.09
18 22 0.42
19 26 0.49
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (19 bp):
ATATAAAAATAATAAAAGT
Found at i:38489895 original size:61 final size:58
Alignment explanation
Indices: 38489797--38489910 Score: 133
Period size: 61 Copynumber: 1.9 Consensus size: 58
38489787 AAATTATAAA
* *
38489797 AAAAATTAGAAAAAATTAAAATCAATAAAAACCATAAATATTATTAAATTTTAATATT
1 AAAAATTAGAAAAAATTAAAATCAATAAAAACCATAAAAATTATAAAATTTTAATATT
* *
38489855 AAAAATTAGAAAACAAATATAAAAAT-AATAAAATA-TATAAAAATTGTAAAATTTTA
1 AAAAATTAG-AAA-AAAT-T-AAAATCAATAAAA-ACCATAAAAATTATAAAATTTTA
38489911 TAAAAATCAT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
58 9 0.19
59 3 0.06
60 4 0.09
61 25 0.53
62 6 0.13
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.31
Consensus pattern (58 bp):
AAAAATTAGAAAAAATTAAAATCAATAAAAACCATAAAAATTATAAAATTTTAATATT
Found at i:38490301 original size:19 final size:19
Alignment explanation
Indices: 38490260--38490301 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
38490250 TGAAATTTAA
**
38490260 TAATTTTTTTCTTTTTTTG
1 TAATTTTTTTCTAATTTTG
38490279 TAATTTTCTTTCTAATTTT-
1 TAATTTT-TTTCTAATTTTG
38490298 TAAT
1 TAAT
38490302 GAAAGCTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.19, C:0.07, G:0.02, T:0.71
Consensus pattern (19 bp):
TAATTTTTTTCTAATTTTG
Found at i:38491153 original size:20 final size:20
Alignment explanation
Indices: 38491128--38491166 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
38491118 ATTGTATATA
*
38491128 TTAATTATAATATTTTAAAT
1 TTAATTATAAAATTTTAAAT
*
38491148 TTAATTTTAAAATTTTAAA
1 TTAATTATAAAATTTTAAA
38491167 AACAAAGTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTAATTATAAAATTTTAAAT
Found at i:38492832 original size:5 final size:5
Alignment explanation
Indices: 38492822--38492848 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
38492812 TGGAGTGTCA
38492822 TTTTC TTTTC TTTTC TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TT
38492849 GACATTCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTC
Found at i:38500739 original size:80 final size:80
Alignment explanation
Indices: 38500636--38500843 Score: 346
Period size: 80 Copynumber: 2.6 Consensus size: 80
38500626 TCTTCGGAAT
* * *
38500636 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
38500700 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
38500715 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
38500780 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * *
38500795 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
38500844 ATATCATTCA
Statistics
Matches: 121, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 4 0.03
80 117 0.97
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:38500844 original size:40 final size:40
Alignment explanation
Indices: 38500636--38500846 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
38500626 TCTTCGGAAT
* * * *
38500636 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
38500675 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
*
38500715 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
38500755 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* *
38500795 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
38500835 TTAGCCCGGATA
1 TTAGCCCGGATA
38500847 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 27, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
39 8 0.06
40 126 0.90
41 6 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:38508773 original size:79 final size:79
Alignment explanation
Indices: 38508632--38508838 Score: 335
Period size: 79 Copynumber: 2.6 Consensus size: 79
38508622 TCTTCGGAAT
* * *
38508632 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCC-GGTATAGCAACTCGCAC
38508696 AAATGCCTTCGGGTC
65 AAATGCCTTCGGGTC
38508711 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
38508776 AATGCCTTCGGGTC
66 AATGCCTTCGGGTC
* * * *
38508790 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGG
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
38508839 ATATCATTCA
Statistics
Matches: 120, Mismatches: 7, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
79 81 0.68
80 39 0.32
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (79 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGTATAGCAACTCGCACA
AATGCCTTCGGGTC
Found at i:38508839 original size:40 final size:40
Alignment explanation
Indices: 38508632--38508841 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
38508622 TCTTCGGAAT
* * * *
38508632 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * * *
38508671 TTAACCCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
*
38508711 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
* * * *
38508751 TTAACCCGG-T-ATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTC
* *
38508790 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
38508830 TTAGCCCGGATA
1 TTAGCCCGGATA
38508842 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
38 3 0.02
39 35 0.25
40 96 0.69
41 6 0.04
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTC
Found at i:38511490 original size:9 final size:9
Alignment explanation
Indices: 38511478--38511506 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
38511468 TTATAATAAA
38511478 TAATTAACT
1 TAATTAACT
38511487 TAATTAACT
1 TAATTAACT
38511496 TAATTAA-T
1 TAATTAACT
38511504 TAA
1 TAA
38511507 ACAAAACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 4 0.20
9 16 0.80
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (9 bp):
TAATTAACT
Found at i:38515001 original size:45 final size:45
Alignment explanation
Indices: 38514951--38515075 Score: 155
Period size: 45 Copynumber: 2.8 Consensus size: 45
38514941 AATTAGTCAA
* *
38514951 ACCATAGCTGAAAGATATTATGGCACCATGATAAAAATGAGTAAG
1 ACCATAGCTGAAAGATACTATGGCACCATGATAAAAATAAGTAAG
* * *
38514996 ACCATAGCT-AAATGATGCTATGGCATCATGATAGAAATAAGTAAG
1 ACCATAGCTGAAA-GATACTATGGCACCATGATAAAAATAAGTAAG
* * *
38515041 ACCATAACTGAAAGACACTATGGCAGCAT-ATAAAA
1 ACCATAGCTGAAAGATACTATGGCACCATGATAAAA
38515076 GCACCTCATA
Statistics
Matches: 68, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
44 8 0.12
45 57 0.84
46 3 0.04
ACGTcount: A:0.45, C:0.15, G:0.18, T:0.22
Consensus pattern (45 bp):
ACCATAGCTGAAAGATACTATGGCACCATGATAAAAATAAGTAAG
Found at i:38522348 original size:20 final size:21
Alignment explanation
Indices: 38522323--38522362 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
38522313 CTCTTGAAAC
* *
38522323 AGGGC-ACATGCCCGTGTGGA
1 AGGGCAACACGCCCATGTGGA
38522343 AGGGCAACACGCCCATGTGG
1 AGGGCAACACGCCCATGTGG
38522363 CCACTATGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.28, G:0.38, T:0.12
Consensus pattern (21 bp):
AGGGCAACACGCCCATGTGGA
Found at i:38523609 original size:46 final size:46
Alignment explanation
Indices: 38523544--38523671 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 46
38523534 TATCCGTTCC
* * * *
38523544 GATGCCATGTCCCAGACATGTCTTGCACTGGCTTACCTCTCGAGGCT
1 GATGCCATGTCCCAAACATGTCTTACACTGGCTT-CCTATCAAGGCT
* * *
38523591 GATG-CATGTCCCAAACATGTCTTACACTAGCTCTCGTATCAATGCT
1 GATGCCATGTCCCAAACATGTCTTACACTGGCT-TCCTATCAAGGCT
*
38523637 GATGCCATCTCCCAAACATGGTCTTACACTGGCTT
1 GATGCCATGTCCCAAACAT-GTCTTACACTGGCTT
38523672 TCATAATGTG
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
46 37 0.54
47 19 0.28
48 13 0.19
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.29
Consensus pattern (46 bp):
GATGCCATGTCCCAAACATGTCTTACACTGGCTTCCTATCAAGGCT
Found at i:38523685 original size:94 final size:94
Alignment explanation
Indices: 38523499--38523715 Score: 224
Period size: 94 Copynumber: 2.3 Consensus size: 94
38523489 AGGTTGACGT
** ** * * *
38523499 CATGTCCCTGACATGGTCTTACACTAGCTCTCACATATCCGTTCCGATGCCATGTCCCAGACATG
1 CATGTCCCAAACAT-GTCTTACACTAGCTCT-ACATATCAATGCCGATGCCATCTCCCAAACATG
* * *
38523564 TCTTGCACTGGCTTACCTCTCGAGGCTGATG
64 TCTTACACTGGCTTACATATCGAGGCTGATG
* *
38523595 CATGTCCCAAACATGTCTTACACTAGCTCT-CGTATCAATGCTGATGCCATCTCCCAAACATGGT
1 CATGTCCCAAACATGTCTTACACTAGCTCTACATATCAATGCCGATGCCATCTCCCAAACAT-GT
* *
38523659 CTTACACTGGCTTTCATAAT-GTGGCTGATG
65 CTTACACTGGCTTACAT-ATCGAGGCTGATG
* *
38523689 CATGT-CAAAGACATGCCTTACACTAGC
1 CATGTCCCAA-ACATGTCTTACACTAGC
38523716 ACACAAATAA
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
93 27 0.26
94 46 0.45
95 17 0.17
96 12 0.12
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (94 bp):
CATGTCCCAAACATGTCTTACACTAGCTCTACATATCAATGCCGATGCCATCTCCCAAACATGTC
TTACACTGGCTTACATATCGAGGCTGATG
Found at i:38523686 original size:48 final size:47
Alignment explanation
Indices: 38523544--38523712 Score: 136
Period size: 46 Copynumber: 3.6 Consensus size: 47
38523534 TATCCGTTCC
* * * * * *
38523544 GATGCCATGTCCCAGACATGTCTTGCACTGGCTTACCT-CTCGAGGCT
1 GATGCCATGTCCCAAACATGTCTTACACTGGCTTTCATAAT-GTGGCT
* *
38523591 GATG-CATGTCCCAAACATGTCTTACACTAGCTCTCGTATCAA--T-GCT
1 GATGCCATGTCCCAAACATGTCTTACACTGGCTTTC--AT-AATGTGGCT
*
38523637 GATGCCATCTCCCAAACATGGTCTTACACTGGCTTTCATAATGTGGCT
1 GATGCCATGTCCCAAACAT-GTCTTACACTGGCTTTCATAATGTGGCT
* *
38523685 GATG-CATGT-CAAAGACATGCCTTACACT
1 GATGCCATGTCCCAA-ACATGTCTTACACT
38523713 AGCACACAAA
Statistics
Matches: 98, Mismatches: 14, Indels: 21
0.74 0.11 0.16
Matches are distributed among these distances:
45 2 0.02
46 47 0.48
47 26 0.27
48 23 0.23
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCCATGTCCCAAACATGTCTTACACTGGCTTTCATAATGTGGCT
Found at i:38533262 original size:47 final size:49
Alignment explanation
Indices: 38533189--38533541 Score: 193
Period size: 46 Copynumber: 7.4 Consensus size: 49
38533179 GGGTATAATA
*
38533189 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-CATCAA-G
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGG
* * *
38533236 TCGATGCCATGTCCCAGACATAGTCTTACAATGACT-ATCGAAATCAAGG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATC-AAATCAAGG
* * *
38533285 TCGACGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATATATC-CGTG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-A-ATCAAG-G
* * * * * * * *
38533335 CCAATACCATGTCCTACACATGGTCTTACACTGACACATC---TCGTA-G
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATC-AAGG
* * * ** *
38533381 CCGATG-CATGTCCTAGACAT-GTCTTACACTGGCTTA-CATCTCGAGG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGG
* * * ** *** * *
38533427 CCGATG-TATGTCCCAGAC-TTGTCTTACACTAACTC-TCGTCTTAATG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGG
* * * * *
38533473 CCGATGCCAAGTCCTAGGCATGGTCTTACACTGGCTC-TCATAAT-ATGG
1 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCA-AATCAAGG
*
38533521 CCGATG-CATGTCCCAGACATG
1 TCGATGCCATGTCCCAGACATG
38533542 CCTTATACTA
Statistics
Matches: 236, Mismatches: 51, Indels: 38
0.73 0.16 0.12
Matches are distributed among these distances:
43 1 0.00
44 13 0.06
45 15 0.06
46 53 0.22
47 53 0.22
48 30 0.13
49 37 0.16
50 32 0.14
51 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (49 bp):
TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCAAATCAAGG
Found at i:38533303 original size:49 final size:47
Alignment explanation
Indices: 38533189--38533314 Score: 173
Period size: 47 Copynumber: 2.6 Consensus size: 47
38533179 GGGTATAATA
* * *
38533189 TCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAG
1 TCGATGCCATGTCCCAGACATGGTCTTACAATGACTCATCAATCAAG
*
38533236 TCGATGCCATGTCCCAGACATAGTCTTACAATGACT-ATCGAAATCAAGG
1 TCGATGCCATGTCCCAGACATGGTCTTACAATGACTCATC--AATCAA-G
*
38533285 TCGACGCCATGTCCCAGACATGGTCTTACA
1 TCGATGCCATGTCCCAGACATGGTCTTACA
38533315 CTAGCTCTCA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
46 3 0.04
47 33 0.47
48 5 0.07
49 29 0.41
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (47 bp):
TCGATGCCATGTCCCAGACATGGTCTTACAATGACTCATCAATCAAG
Found at i:38538275 original size:18 final size:18
Alignment explanation
Indices: 38538248--38538295 Score: 51
Period size: 19 Copynumber: 2.6 Consensus size: 18
38538238 TGAGAAAATT
*
38538248 ATTTAATTAAGAAATTTA
1 ATTTAATTAAGAAATTAA
* *
38538266 ATTTAGTTAATTAAATTAA
1 ATTTAATTAA-GAAATTAA
*
38538285 ATTTATTTAAG
1 ATTTAATTAAG
38538296 GAATAAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (18 bp):
ATTTAATTAAGAAATTAA
Found at i:38541590 original size:23 final size:22
Alignment explanation
Indices: 38541555--38541634 Score: 88
Period size: 23 Copynumber: 3.5 Consensus size: 22
38541545 ATTGAATCAC
*
38541555 ATAGGTTTGCATAATAGTTCAT
1 ATAGGTTCGCATAATAGTTCAT
* *
38541577 ATAGGATTCGCATAATAGATCAC
1 ATAGG-TTCGCATAATAGTTCAT
* *
38541600 ATAAGGTTCGCATACTAATTCAT
1 AT-AGGTTCGCATAATAGTTCAT
38541623 ATAGGATTCGCA
1 ATAGG-TTCGCA
38541635 CATTAAATCA
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
22 8 0.17
23 37 0.77
24 3 0.06
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (22 bp):
ATAGGTTCGCATAATAGTTCAT
Found at i:38541645 original size:46 final size:45
Alignment explanation
Indices: 38541538--38541646 Score: 146
Period size: 46 Copynumber: 2.4 Consensus size: 45
38541528 CACATGAGGG
* * *
38541538 TTCGCATATTGAATCACATAGGTTTGCATAATAGTTCATATAGGA
1 TTCGCATATTAAATCACATAGGTTCGCATAATAATTCATATAGGA
* * *
38541583 TTCGCATAATAGATCACATAAGGTTCGCATACTAATTCATATAGGA
1 TTCGCATATTAAATCACAT-AGGTTCGCATAATAATTCATATAGGA
*
38541629 TTCGCACATTAAATCACA
1 TTCGCATATTAAATCACA
38541647 GACTAAATTT
Statistics
Matches: 54, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 16 0.30
46 38 0.70
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (45 bp):
TTCGCATATTAAATCACATAGGTTCGCATAATAATTCATATAGGA
Found at i:38543521 original size:20 final size:21
Alignment explanation
Indices: 38543492--38543568 Score: 69
Period size: 19 Copynumber: 4.0 Consensus size: 21
38543482 TATTTTTAAG
38543492 AAAATGTTAATAA-TATTATTT
1 AAAATGTTAA-AATTATTATTT
38543513 AAAAT-TTAAAATTATTA-TT
1 AAAATGTTAAAATTATTATTT
* **
38543532 --AATGTTAAAATTAATAGAT
1 AAAATGTTAAAATTATTATTT
38543551 -AAAT-TTAAAATTATTATT
1 AAAATGTTAAAATTATTATT
38543569 AATGAATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
17 3 0.06
18 11 0.23
19 16 0.34
20 12 0.26
21 5 0.11
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (21 bp):
AAAATGTTAAAATTATTATTT
Done.