Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 124 of 290
Found at i:38973955 original size:21 final size:21
Alignment explanation
Indices: 38973931--38973974 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
38973921 GTCACAATAT
38973931 GGGCATGTCCCCAAAGCACAC
1 GGGCATGTCCCCAAAGCACAC
* * * *
38973952 GGGCGTGTGCCCAGATCACAC
1 GGGCATGTCCCCAAAGCACAC
38973973 GG
1 GG
38973975 TCGTGTGAGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.34, G:0.32, T:0.11
Consensus pattern (21 bp):
GGGCATGTCCCCAAAGCACAC
Found at i:38975848 original size:35 final size:37
Alignment explanation
Indices: 38975720--38975916 Score: 190
Period size: 35 Copynumber: 5.3 Consensus size: 37
38975710 TCTTCGTGAT
* *
38975720 TTAGCCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCGGATA-AATCACTAGCACAA-TGCCTTCGGGTC
* * * * *
38975759 TTAACCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCGGATAAATC-ACTAGCAC-AATGCCTTCGGGTC
*
38975798 TTAGCCCGGAT-AATCACTCGC-CAATGCCTTC-GGTC
1 TTAG-CCGGATAAATCACTAGCACAATGCCTTCGGGTC
*
38975833 TTAGCCGGATAAATCACT-GCATAAATGCCTTCGGGT-
1 TTAGCCGGATAAATCACTAGCA-CAATGCCTTCGGGTC
* *
38975869 TTAACC-GATAAATCACTAGCACAATGCCTTCGGGAC
1 TTAGCCGGATAAATCACTAGCACAATGCCTTCGGGTC
38975905 TTAGCCCGGATA
1 TTAG-CCGGATA
38975917 TCATTCAAAT
Statistics
Matches: 132, Mismatches: 15, Indels: 23
0.78 0.09 0.14
Matches are distributed among these distances:
34 8 0.06
35 38 0.29
36 29 0.22
37 6 0.05
38 12 0.09
39 32 0.24
40 7 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (37 bp):
TTAGCCGGATAAATCACTAGCACAATGCCTTCGGGTC
Found at i:38984126 original size:40 final size:40
Alignment explanation
Indices: 38984066--38984232 Score: 201
Period size: 40 Copynumber: 4.2 Consensus size: 40
38984056 TCGAATTTAG
* * * *
38984066 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
38984106 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* *
38984146 CCGGATAAAATCACTAGCATAAATGCCTTCGGGTATTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
38984186 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
38984226 CCGGATA
1 CCGGATA
38984233 TCATTCAAAT
Statistics
Matches: 106, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
39 2 0.02
40 101 0.95
41 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:38987776 original size:12 final size:12
Alignment explanation
Indices: 38987759--38987784 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
38987749 AAAATAGGGC
38987759 TTTAGCGGCGTT
1 TTTAGCGGCGTT
38987771 TTTAGCGGCGTT
1 TTTAGCGGCGTT
38987783 TT
1 TT
38987785 ATCAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:38987921 original size:41 final size:41
Alignment explanation
Indices: 38987839--38988057 Score: 289
Period size: 41 Copynumber: 5.4 Consensus size: 41
38987829 CGTTTTACCA
* * *
38987839 AAAACACCGCTAAAAA-CAGTGCAATAGCGGCGCATTT-GGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGC-TTTCGGT
*
38987879 AAAACGCCACTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
* *
38987920 AAAACGCCGCTAAAAACTAGAGCATTAGCGGTGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
* **
38987961 AAAACGCCGCTAAAAACCAGAGCAATAGCAACGCTTTCGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
* * * **
38988002 AAAACGCCGCTAAAAACTAGAACATTAGCGACGCTTTCAAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
38988043 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
38988058 GTTATATAAC
Statistics
Matches: 159, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
40 17 0.11
41 142 0.89
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.17
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGGT
Found at i:38988935 original size:6 final size:6
Alignment explanation
Indices: 38988926--38988974 Score: 53
Period size: 6 Copynumber: 7.7 Consensus size: 6
38988916 ATTACACATT
* *
38988926 AAATCA AAATAA AAATTAA AAATTAA AAATAA AAATTAA AATTAA AAAT
1 AAATAA AAATAA AAA-TAA AAA-TAA AAATAA AAA-TAA AAATAA AAAT
38988975 TTAAAAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
6 20 0.53
7 18 0.47
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (6 bp):
AAATAA
Found at i:38988954 original size:8 final size:8
Alignment explanation
Indices: 38988936--38989052 Score: 120
Period size: 8 Copynumber: 15.4 Consensus size: 8
38988926 AAATCAAAAT
38988936 AAAAATT-
1 AAAAATTA
38988943 AAAAATT-
1 AAAAATTA
38988950 AAAAA-T-
1 AAAAATTA
38988956 AAAAATT-
1 AAAAATTA
38988963 -AAAATTA
1 AAAAATTA
*
38988970 AAAATTTA
1 AAAAATTA
38988978 AAAAATTA
1 AAAAATTA
38988986 AAAAATTA
1 AAAAATTA
*
38988994 AAAATTTA
1 AAAAATTA
*
38989002 AAAATTTA
1 AAAAATTA
*
38989010 AAAATTTA
1 AAAAATTA
*
38989018 AAAATTTA
1 AAAAATTA
*
38989026 AAAATTTA
1 AAAAATTA
*
38989034 AAAACTTA
1 AAAAATTA
*
38989042 AAAATTTA
1 AAAAATTA
38989050 AAA
1 AAA
38989053 TTTAATATTT
Statistics
Matches: 102, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
6 12 0.12
7 13 0.13
8 77 0.75
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (8 bp):
AAAAATTA
Found at i:38988984 original size:16 final size:16
Alignment explanation
Indices: 38988931--38989052 Score: 143
Period size: 16 Copynumber: 8.1 Consensus size: 16
38988921 ACATTAAATC
38988931 AAAA-TAAAAA-TT-A
1 AAAATTAAAAATTTAA
38988944 AAAATTAAAAA--T-A
1 AAAATTAAAAATTTAA
38988957 AAAATT-AAAA-TTAA
1 AAAATTAAAAATTTAA
* *
38988971 AAATTTAAAAAATTAA
1 AAAATTAAAAATTTAA
38988987 AAAATTAAAAATTTAA
1 AAAATTAAAAATTTAA
*
38989003 AAATTTAAAAATTTAA
1 AAAATTAAAAATTTAA
*
38989019 AAATTTAAAAATTTAA
1 AAAATTAAAAATTTAA
*
38989035 AAACTTAAAAATTTAA
1 AAAATTAAAAATTTAA
38989051 AA
1 AA
38989053 TTTAATATTT
Statistics
Matches: 99, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
12 4 0.04
13 13 0.13
14 12 0.12
15 4 0.04
16 66 0.67
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAATTAAAAATTTAA
Found at i:38988995 original size:24 final size:24
Alignment explanation
Indices: 38988936--38989052 Score: 156
Period size: 24 Copynumber: 5.1 Consensus size: 24
38988926 AAATCAAAAT
38988936 AAAAATT-AAAAATTAAAAA--T-
1 AAAAATTAAAAAATTAAAAATTTA
38988956 AAAAATT--AAAATTAAAAATTTA
1 AAAAATTAAAAAATTAAAAATTTA
38988978 AAAAATTAAAAAATTAAAAATTTA
1 AAAAATTAAAAAATTAAAAATTTA
* *
38989002 AAAATTTAAAAATTTAAAAATTTA
1 AAAAATTAAAAAATTAAAAATTTA
* *
38989026 AAAATTTAAAAACTTAAAAATTTA
1 AAAAATTAAAAAATTAAAAATTTA
38989050 AAA
1 AAA
38989053 TTTAATATTT
Statistics
Matches: 89, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
19 11 0.12
20 7 0.08
21 1 0.01
22 7 0.08
24 63 0.71
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.31
Consensus pattern (24 bp):
AAAAATTAAAAAATTAAAAATTTA
Found at i:38989055 original size:7 final size:7
Alignment explanation
Indices: 38988935--38989062 Score: 87
Period size: 7 Copynumber: 17.1 Consensus size: 7
38988925 TAAATCAAAA
*
38988935 TAAAAAT
1 TAAAATT
*
38988942 TAAAAAT
1 TAAAATT
*
38988949 TAAAA-A
1 TAAAATT
*
38988955 TAAAAAT
1 TAAAATT
38988962 TAAAATT
1 TAAAATT
*
38988969 AAAAATT
1 TAAAATT
38988976 TAAAAAATT
1 T--AAAATT
*
38988985 AAAAAATT
1 -TAAAATT
*
38988993 AAAAATT
1 TAAAATT
38989000 TAAAAATT
1 T-AAAATT
38989008 TAAAAATT
1 T-AAAATT
38989016 TAAAAATT
1 T-AAAATT
38989024 TAAAAATT
1 T-AAAATT
38989032 TAAAAACTT
1 T-AAAA-TT
*
38989041 AAAAATT
1 TAAAATT
38989048 TAAAATT
1 TAAAATT
*
38989055 TAATATT
1 TAAAATT
38989062 T
1 T
38989063 TAGTCCATAT
Statistics
Matches: 105, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
6 5 0.05
7 46 0.44
8 46 0.44
9 8 0.08
ACGTcount: A:0.65, C:0.01, G:0.00, T:0.34
Consensus pattern (7 bp):
TAAAATT
Found at i:38989165 original size:20 final size:20
Alignment explanation
Indices: 38989142--38989230 Score: 87
Period size: 20 Copynumber: 4.6 Consensus size: 20
38989132 TTTGAAAGAA
38989142 AAAAATAAAAAATATATGTT
1 AAAAATAAAAAATATATGTT
*
38989162 AAAAATGAAAAAA-A-A-ATT
1 AAAAAT-AAAAAATATATGTT
* * * * *
38989180 AAAATTAAACAATAAAAG-A
1 AAAAATAAAAAATATATGTT
38989199 AAAAATAAAAAATATATGTT
1 AAAAATAAAAAATATATGTT
38989219 AAAAATAAAAAA
1 AAAAATAAAAAA
38989231 AATAAAATTA
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
17 5 0.09
18 8 0.15
19 16 0.30
20 19 0.35
21 6 0.11
ACGTcount: A:0.73, C:0.01, G:0.04, T:0.21
Consensus pattern (20 bp):
AAAAATAAAAAATATATGTT
Found at i:38989201 original size:25 final size:24
Alignment explanation
Indices: 38989160--38989208 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
38989150 AAAATATATG
*
38989160 TTAAAAATGAAAAAAAAATTAAAA
1 TTAAAAATGAAAAAAAAAATAAAA
38989184 TTAAACAAT-AAAAGAAAAAATAAAA
1 TTAAA-AATGAAAA-AAAAAATAAAA
38989209 AATATATGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (24 bp):
TTAAAAATGAAAAAAAAAATAAAA
Found at i:38989207 original size:57 final size:55
Alignment explanation
Indices: 38989136--38989247 Score: 190
Period size: 57 Copynumber: 2.0 Consensus size: 55
38989126 AAAAAATTTG
38989136 AAAGAAAAAAATAAAAAATATATGTTAAAAATGAAAAAAAAATTAAAATTAAACAATA
1 AAAGAAAAAAATAAAAAATATATGTTAAAAAT--AAAAAAAA-TAAAATTAAACAATA
38989194 AAAG-AAAAAATAAAAAATATATGTTAAAAATAAAAAAAATAAAATTAAACAATA
1 AAAGAAAAAAATAAAAAATATATGTTAAAAATAAAAAAAATAAAATTAAACAATA
38989248 GTGGCGTTTT
Statistics
Matches: 54, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
54 15 0.28
55 8 0.15
57 27 0.50
58 4 0.07
ACGTcount: A:0.73, C:0.02, G:0.04, T:0.21
Consensus pattern (55 bp):
AAAGAAAAAAATAAAAAATATATGTTAAAAATAAAAAAAATAAAATTAAACAATA
Found at i:38989230 original size:29 final size:29
Alignment explanation
Indices: 38989140--38989237 Score: 98
Period size: 29 Copynumber: 3.4 Consensus size: 29
38989130 AATTTGAAAG
*
38989140 AAAAAAATAAAAAATATATGTTAAAAATG
1 AAAAAAATAAAAAATATATGTTAAAAATA
**
38989169 AAAAAAA-AATTAA-A-A--TTAAACAATAAA
1 AAAAAAATAAAAAATATATGTTAAA-AAT--A
38989196 AGAAAAAATAAAAAATATATGTTAAAAATA
1 A-AAAAAATAAAAAATATATGTTAAAAATA
38989226 AAAAAAATAAAA
1 AAAAAAATAAAA
38989238 TTAAACAATA
Statistics
Matches: 55, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
24 5 0.09
25 3 0.05
26 1 0.02
27 2 0.04
28 10 0.18
29 22 0.40
30 3 0.05
31 1 0.02
32 3 0.05
33 5 0.09
ACGTcount: A:0.74, C:0.01, G:0.04, T:0.20
Consensus pattern (29 bp):
AAAAAAATAAAAAATATATGTTAAAAATA
Found at i:38993065 original size:19 final size:19
Alignment explanation
Indices: 38993043--38993083 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
38993033 TTTATTGATA
38993043 TTTTTA-TATTTAATCTAG
1 TTTTTATTATTTAATCTAG
* *
38993061 TTTTTATTATTTATTTTAG
1 TTTTTATTATTTAATCTAG
38993080 TTTT
1 TTTT
38993084 GATTCTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.22, C:0.02, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTATTATTTAATCTAG
Found at i:39014615 original size:40 final size:41
Alignment explanation
Indices: 39014560--39014665 Score: 180
Period size: 40 Copynumber: 2.6 Consensus size: 41
39014550 TTGAATGATG
39014560 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
39014600 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
39014641 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
39014666 AACGAGTAGC
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
40 60 0.97
41 2 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:39017004 original size:17 final size:17
Alignment explanation
Indices: 39016982--39017020 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
39016972 AACCAGAACT
*
39016982 ACACCAGAACAAGCTCA
1 ACACCAGAACAAACTCA
39016999 ACACCAGAACAAACTCA
1 ACACCAGAACAAACTCA
39017016 ACACC
1 ACACC
39017021 TTCCCACATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.49, C:0.38, G:0.08, T:0.05
Consensus pattern (17 bp):
ACACCAGAACAAACTCA
Found at i:39023920 original size:17 final size:18
Alignment explanation
Indices: 39023898--39023931 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
39023888 AAATACTAAC
39023898 AATTAAAT-AAATTGAAA
1 AATTAAATAAAATTGAAA
39023915 AATTAAATAAAATTGAA
1 AATTAAATAAAATTGAA
39023932 TTTTGGGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (18 bp):
AATTAAATAAAATTGAAA
Found at i:39029243 original size:19 final size:21
Alignment explanation
Indices: 39029219--39029257 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
39029209 TGCTATTTAG
39029219 AGTTTC-CA-AAGAAAAATCC
1 AGTTTCACAGAAGAAAAATCC
*
39029238 AGTTTCACAGCAGAAAAATC
1 AGTTTCACAGAAGAAAAATC
39029258 AGTGTCCACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 2 0.12
21 9 0.53
ACGTcount: A:0.46, C:0.21, G:0.13, T:0.21
Consensus pattern (21 bp):
AGTTTCACAGAAGAAAAATCC
Found at i:39029267 original size:21 final size:21
Alignment explanation
Indices: 39029228--39029267 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
39029218 GAGTTTCCAA
*
39029228 AGAAAAATCCAGTTTCACAGC
1 AGAAAAATCCAGTTCCACAGC
39029249 AGAAAAAT-CAGTGTCCACA
1 AGAAAAATCCAGT-TCCACA
39029268 ACCATAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.45, C:0.23, G:0.15, T:0.17
Consensus pattern (21 bp):
AGAAAAATCCAGTTCCACAGC
Found at i:39030802 original size:7 final size:7
Alignment explanation
Indices: 39030790--39030817 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
39030780 CCATAGCCCT
39030790 TTTCATA
1 TTTCATA
39030797 TTTCATA
1 TTTCATA
39030804 TTTCATA
1 TTTCATA
39030811 TTTCATA
1 TTTCATA
39030818 ACACTGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57
Consensus pattern (7 bp):
TTTCATA
Found at i:39030845 original size:31 final size:31
Alignment explanation
Indices: 39030804--39030867 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
39030794 ATATTTCATA
* *
39030804 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
**
39030835 TTTCAAATTTCATATTACTGGGCCAAAGCCT
1 TTTCAAATTTCATAACACTGGGCCAAAGCCT
39030866 TT
1 TT
39030868 ACTGTAAACG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCAAAGCCT
Found at i:39031106 original size:23 final size:24
Alignment explanation
Indices: 39031075--39031225 Score: 218
Period size: 23 Copynumber: 6.4 Consensus size: 24
39031065 CTGGAGGCCT
39031075 AGCCTCTTTTAATAACTGGGGCA-A
1 AGCC-CTTTTAATAACTGGGGCATA
*
39031099 AGCCCTTTTAATAATTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
39031123 AGCCC-TTTAATAACTGGGGCGTA
1 AGCCCTTTTAATAACTGGGGCATA
*
39031146 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
39031170 AGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
39031194 AGCCC-TTTAATAACTAGGGCCTA
1 AGCCCTTTTAATAACTGGGGCATA
39031217 AGCCCTTTT
1 AGCCCTTTT
39031226 TCACTTCCTC
Statistics
Matches: 116, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
23 58 0.50
24 58 0.50
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:39031191 original size:71 final size:70
Alignment explanation
Indices: 39031070--39031225 Score: 242
Period size: 71 Copynumber: 2.2 Consensus size: 70
39031060 TATATCTGGA
*
39031070 GGCCT-AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTAATAATTGGGGCATAAGCCCTTTAAT
1 GGCCTAAGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAAT
*
39031134 AACTGG
65 AACTAG
* * *
39031140 GGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAAT
1 GGCCTAAGCCCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAAT
39031205 AACTAG
65 AACTAG
39031211 GGCCTAAGCCCTTTT
1 GGCCTAAGCCCTTTT
39031226 TCACTTCCTC
Statistics
Matches: 78, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
70 21 0.27
71 57 0.73
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (70 bp):
GGCCTAAGCCCTTTTAATAACTGGGGCAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAATA
ACTAG
Found at i:39031225 original size:47 final size:48
Alignment explanation
Indices: 39031075--39031225 Score: 218
Period size: 47 Copynumber: 3.2 Consensus size: 48
39031065 CTGGAGGCCT
*
39031075 AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTAATAATTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
* *
39031123 AGCCC-TTTAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
* * *
39031170 AGCCCTTTTGATAACTGGGGCATAAGCCC-TTTAATAACTAGGGCCTA
1 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
39031217 AGCCCTTTT
1 AGCCCTTTT
39031226 TCACTTCCTC
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
46 15 0.16
47 53 0.57
48 25 0.27
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATA
Found at i:39031301 original size:20 final size:20
Alignment explanation
Indices: 39031276--39031342 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
39031266 TTATGAATAC
39031276 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
39031296 ATCATGTGCAGATCATACAT
1 ATCATGTGCATATCATACAT
*
39031316 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
39031336 ACCATGT
1 ATCATGT
39031343 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:39035015 original size:16 final size:17
Alignment explanation
Indices: 39034996--39035027 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
39034986 GAAAGTGACA
39034996 AAATTAAA-AGATAATT
1 AAATTAAATAGATAATT
39035012 AAATTAAATAGATAAT
1 AAATTAAATAGATAAT
39035028 ATCATCTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (17 bp):
AAATTAAATAGATAATT
Found at i:39038100 original size:40 final size:40
Alignment explanation
Indices: 39038064--39038293 Score: 347
Period size: 40 Copynumber: 5.8 Consensus size: 40
39038054 GGATATAGCT
*
39038064 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
39038104 GTTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
39038144 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
39038184 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* * *
39038224 CCTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
* *
39038264 ACTAGCACAAATGCCTTCGAGACTTAGCCC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC
39038294 CGTTATCATC
Statistics
Matches: 179, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
40 177 0.99
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:39038190 original size:80 final size:79
Alignment explanation
Indices: 39038038--39038293 Score: 356
Period size: 80 Copynumber: 3.2 Consensus size: 79
39038028 AAACCAAGTA
* * *
39038038 CCTTCGGGATTTA-ACCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATA
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TA
**
39038101 GTAGTTCGCACAAATG
64 GTAACTCGCACAAATG
39038117 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAG
39038182 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* *
39038197 CCTTCGGGACTTAGCCCGGA-ATTAGTCCCTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
* *
39038261 GTCACTAGCACAAATG
64 GTAACTCGCACAAATG
*
39038277 CCTTCGAGACTTAGCCC
1 CCTTCGGGACTTAGCCC
39038294 CGTTATCATC
Statistics
Matches: 162, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
79 14 0.09
80 146 0.90
81 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTCGCACAAATG
Found at i:39042585 original size:16 final size:16
Alignment explanation
Indices: 39042566--39042600 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
39042556 TTATGTATGT
39042566 ATGACTGTAATCGAGC
1 ATGACTGTAATCGAGC
39042582 ATGACTGTAATCGAGC
1 ATGACTGTAATCGAGC
39042598 ATG
1 ATG
39042601 CCATTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (16 bp):
ATGACTGTAATCGAGC
Found at i:39056511 original size:55 final size:54
Alignment explanation
Indices: 39056424--39056678 Score: 260
Period size: 55 Copynumber: 4.8 Consensus size: 54
39056414 ATTAGGGTTT
* *
39056424 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
39056479 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
39056534 GAAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* * *
39056587 AAGGCTACCATGTAAGACCATGTCAAGACATGG-AAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* *
39056636 AAGGATACCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
39056679 GTACCCGTGT
Statistics
Matches: 169, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
49 37 0.22
50 2 0.01
52 7 0.04
53 41 0.24
54 11 0.07
55 67 0.40
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:39056630 original size:108 final size:110
Alignment explanation
Indices: 39056434--39056680 Score: 307
Period size: 108 Copynumber: 2.3 Consensus size: 110
39056424 AAGGATACCG
*
39056434 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
* *
39056499 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCGAAGGTCCCA
66 TGTCAAGACATGGAAATGATAAGTTACTATAAGGCGAAGGTCCCA
* **
39056544 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAGACC
* * * *
39056606 ATGTCAAGACATGGAAATGGTAAGTTTC-A-AAAG-G-A--TACCA
65 ATGTCAAGACATGGAAATGATAAGTTACTATAAGGCGAAGGTCCCA
* *
39056646 TGTAAGACCATGACAAGTCATGGCAA-TGGTAAGGT
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGT
39056681 ACCCGTGTAT
Statistics
Matches: 120, Mismatches: 13, Indels: 14
0.82 0.09 0.10
Matches are distributed among these distances:
102 31 0.26
103 2 0.02
104 1 0.01
105 1 0.01
106 3 0.03
107 4 0.03
108 47 0.39
109 7 0.06
110 24 0.20
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGACCA
TGTCAAGACATGGAAATGATAAGTTACTATAAGGCGAAGGTCCCA
Found at i:39058205 original size:55 final size:55
Alignment explanation
Indices: 39058118--39058374 Score: 225
Period size: 55 Copynumber: 4.8 Consensus size: 55
39058108 ATTAGGGTTT
* *
39058118 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * * * *
39058173 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGAT-AGGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTT--TCTAAGGC
* * * *
39058228 AAAGG-TCCCATGTAAGACCACGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTC-TAAGGC
* * *
39058281 AAGGCTACCATGTAAGACCATGTCAAGACACGGCAA-TGGTAA-GTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * **
39058330 AAGGATACCACGTAAGACCATGACAATTCATGGCAA-TGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGT
39058375 ACCCGTGTAT
Statistics
Matches: 166, Mismatches: 27, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
49 36 0.22
50 2 0.01
52 7 0.04
53 41 0.25
54 10 0.06
55 65 0.39
56 5 0.03
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.21
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
Found at i:39058585 original size:16 final size:16
Alignment explanation
Indices: 39058564--39058594 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
39058554 ATAAATTTGA
*
39058564 TTAAGTTAGTAAGTAT
1 TTAAGTAAGTAAGTAT
39058580 TTAAGTAAGTAAGTA
1 TTAAGTAAGTAAGTA
39058595 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:39059998 original size:53 final size:53
Alignment explanation
Indices: 39059815--39060069 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
39059805 ATTAGGGTTT
* * *
39059815 AAGGATACCGTGTAAGACCATGCCAAGGCATGTCAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-G-TTCATAAGGC
* * * * *
39059870 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAGGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC
* *
39059925 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
* * *
39059978 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT--TCAA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGC
* * ** *
39060027 AAGGATACCACGTAAGACCATGACAATTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
39060070 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
49 38 0.22
51 1 0.01
52 8 0.05
53 45 0.26
54 7 0.04
55 67 0.39
56 4 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGC
Found at i:39060282 original size:16 final size:16
Alignment explanation
Indices: 39060261--39060291 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
39060251 ATAAATTTGA
39060261 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
39060277 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
39060292 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:39076504 original size:30 final size:30
Alignment explanation
Indices: 39076448--39076506 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
39076438 TACGAGCCTT
**
39076448 GGGGCAAAAATGCAAATATGTGAAAGTTTA
1 GGGGCAAAAATGCAAATATGCCAAAGTTTA
* *
39076478 GGGGCAAAAATGCAATTTTGCCAAAGTTT
1 GGGGCAAAAATGCAAATATGCCAAAGTTT
39076507 GGGTCAAGGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.25
Consensus pattern (30 bp):
GGGGCAAAAATGCAAATATGCCAAAGTTTA
Found at i:39076929 original size:55 final size:54
Alignment explanation
Indices: 39076842--39077096 Score: 246
Period size: 55 Copynumber: 4.8 Consensus size: 54
39076832 ATTAGGGTTT
* * *
39076842 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTACGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTA-AGTTTCTAAGGC
* * * * *
39076897 AAGGAAATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
*
39076952 AAAGG-T-CCTATGTAAGACCATGCCAATG-CATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACC-ATGTAAGACCATGCCAA-GACATGGCAATTGGTAAGTTTC-TAAGGC
* *
39077005 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* *
39077054 AAGGATACCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
39077097 GTACCCGTGT
Statistics
Matches: 170, Mismatches: 19, Indels: 28
0.78 0.09 0.13
Matches are distributed among these distances:
49 40 0.24
52 8 0.05
53 38 0.22
54 14 0.08
55 65 0.38
56 5 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:39077048 original size:108 final size:109
Alignment explanation
Indices: 39076852--39077049 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 109
39076842 AAGGATACCG
*
39076852 TGTAAGACCATGCCAAGGCATGGCAATTGGTACGGTTTCTAAGGCAAGGAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAC-GTTTCTAAGGCAAGGAAACCATGTAAGACCA
*
39076917 TGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCTA
65 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCTA
* **
39076962 TGTAAGACCATGCCAATGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGT-ACGTTTC-TAAGGCAAGGAAACCATGTAAGACC
*
39077024 ATGTCAAGACATGGCAATGGTAAGTT
64 ATGTCAAGACATGGCAATGATAAGTT
39077050 TCAAAAGGAT
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
107 3 0.04
108 47 0.59
109 6 0.08
110 24 0.30
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (109 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTACGTTTCTAAGGCAAGGAAACCATGTAAGACCAT
GTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCTA
Found at i:39078806 original size:40 final size:40
Alignment explanation
Indices: 39078762--39078957 Score: 290
Period size: 40 Copynumber: 4.9 Consensus size: 40
39078752 GGATATAGCT
* *
39078762 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
39078802 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
*
39078842 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
*
39078882 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
39078922 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
39078958 CATCCGAATA
Statistics
Matches: 141, Mismatches: 9, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
39 2 0.01
40 137 0.97
41 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:39078895 original size:80 final size:80
Alignment explanation
Indices: 39078762--39078953 Score: 332
Period size: 80 Copynumber: 2.4 Consensus size: 80
39078752 GGATATAGCT
* * * *
39078762 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
39078827 AGCCCGGATTTGGTA
66 AGCCCGGATTTGGTA
39078842 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACT
39078906 TAGCCCGGATTTGGTA
65 TAGCCCGGATTTGGTA
39078922 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
39078954 TTATCATCCG
Statistics
Matches: 107, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
79 1 0.01
80 106 0.99
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.23
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATTTGGTA
Found at i:39085280 original size:20 final size:20
Alignment explanation
Indices: 39085252--39085291 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
39085242 AAGGTGGCCA
*
39085252 CACATCTGCATGGACTTTCT
1 CACAACTGCATGGACTTTCT
*
39085272 CACAACTGCGTGGACTTTCT
1 CACAACTGCATGGACTTTCT
39085292 TATTACATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.33
Consensus pattern (20 bp):
CACAACTGCATGGACTTTCT
Found at i:39086181 original size:24 final size:24
Alignment explanation
Indices: 39086121--39086248 Score: 80
Period size: 25 Copynumber: 5.2 Consensus size: 24
39086111 GTACATGTAT
* *
39086121 GCTCATACGAGCTCTGAATCGGTAT
1 GCTCATACGAGCTAT-AATCGGTAA
* **
39086146 GCTCTTTTGAGCTATAATCGGTAA
1 GCTCATACGAGCTATAATCGGTAA
* *
39086170 ACTCATACGAGCTGAGTAA-CAGTAA
1 GCTCATACGAGCT-A-TAATCGGTAA
** *
39086195 GCTCATACGAATTGAATAAT-AGTAA
1 GCTCATACGAGCT--ATAATCGGTAA
* *
39086220 GCTCATACGAGCTAAATATCGATAA
1 GCTCATACGAGCTATA-ATCGGTAA
39086245 GCTC
1 GCTC
39086249 TCTCGAGATG
Statistics
Matches: 78, Mismatches: 19, Indels: 12
0.72 0.17 0.11
Matches are distributed among these distances:
23 2 0.03
24 19 0.24
25 53 0.68
26 4 0.05
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.27
Consensus pattern (24 bp):
GCTCATACGAGCTATAATCGGTAA
Found at i:39086199 original size:25 final size:25
Alignment explanation
Indices: 39086166--39086237 Score: 90
Period size: 25 Copynumber: 2.9 Consensus size: 25
39086156 GCTATAATCG
* *
39086166 GTAAACTCATACGAGCTGAGTAACA
1 GTAAGCTCATACGAGCTGAATAACA
** *
39086191 GTAAGCTCATACGAATTGAATAATA
1 GTAAGCTCATACGAGCTGAATAACA
*
39086216 GTAAGCTCATACGAGCTAAATA
1 GTAAGCTCATACGAGCTGAATA
39086238 TCGATAAGCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.24
Consensus pattern (25 bp):
GTAAGCTCATACGAGCTGAATAACA
Found at i:39089134 original size:45 final size:45
Alignment explanation
Indices: 39089036--39089443 Score: 565
Period size: 45 Copynumber: 9.1 Consensus size: 45
39089026 CTTTTCTCAA
* *
39089036 TTCACCGGCATT-TCA-CCTGCTAGGCTC-GAGGCCCG-ATATCAT
1 TTCACCGGCATTAT-AGCCTGCTAGGCTCAAAGGCCCGAATAACAT
* * * **
39089078 TTCACCTGCATTATAGCCTGTTAGGCTTGAAA-GCCCGAATAGTAT
1 TTCACCGGCATTATAGCCTGCTAGGC-TCAAAGGCCCGAATAACAT
* * ** *
39089123 CTCACCGGCATTATAGCCTACTAGGCTCAAAGGCATGAATAATAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
* * *
39089168 CTCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAATAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
* *
39089213 CTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAACAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
*
39089258 TTCACCGGCATTATAGCTTGCTAGGCTCAAAGGCCCGAATAACAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
* *
39089303 TTCATCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
*
39089348 TTCACCGGCATTATAGCCTGCTAGGCTCAAAAGCCCGAATAACAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
*
39089393 TTCACCGACATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
39089438 TTCACC
1 TTCACC
39089444 AGTTCTTTCC
Statistics
Matches: 328, Mismatches: 32, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
42 12 0.04
43 10 0.03
44 10 0.03
45 296 0.90
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (45 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACAT
Found at i:39089151 original size:25 final size:25
Alignment explanation
Indices: 39089123--39089196 Score: 59
Period size: 25 Copynumber: 3.2 Consensus size: 25
39089113 CGAATAGTAT
39089123 CTCACCGGCATTATAGCCTACTAGG
1 CTCACCGGCATTATAGCCTACTAGG
** * * *
39089148 CTCAAAGGCATGA-A---TAATA-T
1 CTCACCGGCATTATAGCCTACTAGG
*
39089168 CTCACCGGCATTATAGCCTGCTAGG
1 CTCACCGGCATTATAGCCTACTAGG
39089193 CTCA
1 CTCA
39089197 AAAGCCCGAA
Statistics
Matches: 33, Mismatches: 11, Indels: 10
0.61 0.20 0.19
Matches are distributed among these distances:
20 10 0.30
21 5 0.15
24 4 0.12
25 14 0.42
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (25 bp):
CTCACCGGCATTATAGCCTACTAGG
Found at i:39099434 original size:40 final size:40
Alignment explanation
Indices: 39099354--39099574 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
39099344 TATTCGGACG
* *
39099354 ATATCCGGGCTAAGTCCTGAAGGCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
*
39099393 ATATCTGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
*
39099433 ATATCCGGGCTAAGTCCCGAAGGC-GTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
39099473 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
39099513 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
*
39099553 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
39099575 TACTTGGGTT
Statistics
Matches: 162, Mismatches: 14, Indels: 12
0.86 0.07 0.06
Matches are distributed among these distances:
39 40 0.25
40 117 0.72
41 5 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:39099488 original size:80 final size:79
Alignment explanation
Indices: 39099354--39099574 Score: 320
Period size: 80 Copynumber: 2.8 Consensus size: 79
39099344 TATTCGGACG
* * * *
39099354 ATATCCGGGCTAAGTCCTGAAGGCATTGTGCTAG-TGACTATATCTGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGCA
*
39099418 GTTGTGCTATTGACT
65 GTTGTGCTAGTGACT
*
39099433 ATATCCGGGCTAAGTCCCGAAGGCGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
*
39099498 TTTGTGCTAGTGACT
65 GTTGTGCTAGTGACT
* *
39099513 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGC-TTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
39099575 TACTTGGGTT
Statistics
Matches: 130, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
79 38 0.29
80 90 0.69
81 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGCTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAG
TTGTGCTAGTGACT
Found at i:39107622 original size:40 final size:40
Alignment explanation
Indices: 39107542--39107762 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
39107532 TATTCGGACG
* *
39107542 ATATCCGGGCTAAGTCCTGAAGGCA-TTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
39107581 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* *
39107621 ATATCCGGGCTAAGTCCCGAAGG-TGTTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
39107661 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
39107701 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
*
39107741 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
39107763 TACTTGGGTT
Statistics
Matches: 163, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 41 0.25
40 116 0.71
41 6 0.04
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:39107674 original size:80 final size:79
Alignment explanation
Indices: 39107542--39107762 Score: 313
Period size: 80 Copynumber: 2.8 Consensus size: 79
39107532 TATTCGGACG
* *
39107542 ATATCCGGGCTAAGTCCTGAAGGCA-TTGTGCTAG-TGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGG-ATTTGTGCGAGTTG-CTATATCCGGGCTAAGTCCCGAAGGC
*
39107605 AGTTGTGCTATTGACT
64 AGTTGTGCTAGTGACT
* *
39107621 ATATCCGGGCTAAGTCCCGAAGGTGTTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCT
1 ATATCCGGGCTAAGTCCCGAAGG-ATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
*
39107686 TTTGTGCTAGTGACT
65 GTTGTGCTAGTGACT
* *
39107701 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG-ATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
39107763 TACTTGGGTT
Statistics
Matches: 129, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
79 37 0.29
80 90 0.70
81 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (79 bp):
ATATCCGGGCTAAGTCCCGAAGGATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCAG
TTGTGCTAGTGACT
Found at i:39110356 original size:25 final size:25
Alignment explanation
Indices: 39110278--39110358 Score: 126
Period size: 25 Copynumber: 3.2 Consensus size: 25
39110268 CTATAATCGA
*
39110278 TAAGCTCATACGAGCTAAATAATGG
1 TAAGCTCATACGAGCTGAATAATGG
* *
39110303 TAAACTCATACGAGCTGAATAACGG
1 TAAGCTCATACGAGCTGAATAATGG
*
39110328 TAAGCTCATACGAGCTGAATATTGG
1 TAAGCTCATACGAGCTGAATAATGG
39110353 TAAGCT
1 TAAGCT
39110359 TTCTCGAGCT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (25 bp):
TAAGCTCATACGAGCTGAATAATGG
Found at i:39110368 original size:25 final size:25
Alignment explanation
Indices: 39110232--39110358 Score: 118
Period size: 25 Copynumber: 5.1 Consensus size: 25
39110222 GTACATGTAT
*
39110232 GCTCATACGAGCTCTGAAT--CGGTAT
1 GCTCATACGAG--CTGAATAACGGTAA
* * *
39110257 GCTCTTATGAGCT--ATAATCGATAA
1 GCTCATACGAGCTGAATAA-CGGTAA
* *
39110281 GCTCATACGAGCTAAATAATGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
*
39110306 ACTCATACGAGCTGAATAACGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
**
39110331 GCTCATACGAGCTGAATATTGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
39110356 GCT
1 GCT
39110359 TTCTCGAGCT
Statistics
Matches: 83, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.02
23 2 0.02
24 15 0.18
25 60 0.72
26 4 0.05
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGGTAA
Found at i:39110379 original size:50 final size:51
Alignment explanation
Indices: 39110272--39110380 Score: 127
Period size: 50 Copynumber: 2.2 Consensus size: 51
39110262 TATGAGCTAT
* *
39110272 AATCGATAAGCTCATACGAGCTAAATAATGGTAAACTCATACGAGCTGAAT
1 AATCGGTAAGCTCATACGAGCTAAATAATGGTAAACTCATACGAGCTGAAG
* * *
39110323 AA-CGGTAAGCTCATACGAGCTGAATATTGGTAAGCTTTC-T-CGAGCT-AAG
1 AATCGGTAAGCTCATACGAGCTAAATAATGGTAAAC--TCATACGAGCTGAAG
39110372 AATCGGTAA
1 AATCGGTAA
39110381 CCCTAATTAC
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
49 4 0.08
50 41 0.82
51 3 0.06
52 2 0.04
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (51 bp):
AATCGGTAAGCTCATACGAGCTAAATAATGGTAAACTCATACGAGCTGAAG
Found at i:39118813 original size:37 final size:37
Alignment explanation
Indices: 39118762--39118841 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
39118752 CTTATTACGA
* *
39118762 AGTCTTACCCGGACATAA-TCTCCACACGAAGTTATCG
1 AGTCTTACCCGGACAAAATTC-CCACACGAAGTCATCG
* *
39118799 GGTCTTACCCGGACAAAATTCCCACACGTAGTCATCG
1 AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
39118836 AGTCTT
1 AGTCTT
39118842 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (37 bp):
AGTCTTACCCGGACAAAATTCCCACACGAAGTCATCG
Found at i:39119038 original size:47 final size:47
Alignment explanation
Indices: 39118960--39119341 Score: 577
Period size: 47 Copynumber: 8.1 Consensus size: 47
39118950 CCCTTCGGGA
* * * * * *
39118960 CTTATCACATTTA-AGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATA-CACTTTCACATTCATCACATCGGCCATTAGGC
***
39119007 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39119054 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
39119101 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39119148 CTTATCACATATATATACACTTTCACATTCATCACATCGACTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
39119197 CTTATCACACATATACACTTTCACATTCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
39119244 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39119291 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
39119338 CTTA
1 CTTA
39119342 CTATCATTTC
Statistics
Matches: 310, Mismatches: 22, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
47 264 0.85
48 1 0.00
49 45 0.15
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:39119194 original size:143 final size:141
Alignment explanation
Indices: 39118975--39119341 Score: 572
Period size: 143 Copynumber: 2.6 Consensus size: 141
39118965 CACATTTAAG
* * * * * ***
39118975 CACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
*
39119040 ATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
66 ATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
* *
39119105 TTACATATATA
131 TCACACATATA
39119116 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATC
* * * *
39119181 ACATCGACTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATTGGCTATTAGGCCT
64 ACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
39119246 TATCACACATATA
129 TATCACACATATA
*
39119259 CACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
1 CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
39119324 ATCGGCCATTAGGCCTTA
66 ATCGGCCATTAGGCCTTA
39119342 CTATCATTTC
Statistics
Matches: 206, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
141 73 0.35
143 133 0.65
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
TCACACATATA
Found at i:39138595 original size:38 final size:38
Alignment explanation
Indices: 39138544--39138619 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
39138534 AATGACTCCA
39138544 AAATAATAATAAAATAATTTATTCAACTCTAAATTTAT
1 AAATAATAATAAAATAATTTATTCAACTCTAAATTTAT
*
39138582 AAATAATAATAAAATAATTTATTCAACTCTGAATTTAT
1 AAATAATAATAAAATAATTTATTCAACTCTAAATTTAT
39138620 GGTCTCGAGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.51, C:0.08, G:0.01, T:0.39
Consensus pattern (38 bp):
AAATAATAATAAAATAATTTATTCAACTCTAAATTTAT
Found at i:39140488 original size:20 final size:20
Alignment explanation
Indices: 39140463--39140531 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
39140453 AGGAGTACAA
39140463 AAAAAAATATGAGAAAATAT
1 AAAAAAATATGAGAAAATAT
* * * * *
39140483 AAAAAACTGTGAGGAAGTGCT
1 AAAAAAATATGAGAAAAT-AT
39140504 AAAAAAA-ATGAGAAAATAT
1 AAAAAAATATGAGAAAATAT
39140523 AAAAAAATA
1 AAAAAAATA
39140532 AAAAAATACC
Statistics
Matches: 37, Mismatches: 10, Indels: 4
0.73 0.20 0.08
Matches are distributed among these distances:
19 8 0.22
20 22 0.59
21 7 0.19
ACGTcount: A:0.65, C:0.03, G:0.14, T:0.17
Consensus pattern (20 bp):
AAAAAAATATGAGAAAATAT
Found at i:39140537 original size:18 final size:18
Alignment explanation
Indices: 39140505--39140539 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
39140495 GGAAGTGCTA
* *
39140505 AAAAAAATGAGAAAATAT
1 AAAAAAATAAAAAAATAT
39140523 AAAAAAATAAAAAAATA
1 AAAAAAATAAAAAAATA
39140540 CCAAAAATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.06, T:0.14
Consensus pattern (18 bp):
AAAAAAATAAAAAAATAT
Found at i:39140627 original size:21 final size:21
Alignment explanation
Indices: 39140602--39140646 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
39140592 TTGGTCTTAA
*
39140602 TAAATTTGTTTTTAAAT-TTAT
1 TAAATTT-TTATTAAATATTAT
*
39140623 TAAATTTTTATTAATTATTAT
1 TAAATTTTTATTAAATATTAT
39140644 TAA
1 TAA
39140647 TGTATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (21 bp):
TAAATTTTTATTAAATATTAT
Found at i:39142010 original size:30 final size:30
Alignment explanation
Indices: 39141963--39142039 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
39141953 CTTACAATTT
*
39141963 ATCACTAAATTATTTAAAAAAATTTAT-TCAA
1 ATCACTAAACTA-TTAAAAAAATTTATAT-AA
* **
39141994 ATCATTAAACTATTAAAAAGTTTTATATAA
1 ATCACTAAACTATTAAAAAAATTTATATAA
*
39142024 ATCACTAAATTATTAA
1 ATCACTAAACTATTAA
39142040 GTTTTTTCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
30 28 0.72
31 11 0.28
ACGTcount: A:0.51, C:0.09, G:0.01, T:0.39
Consensus pattern (30 bp):
ATCACTAAACTATTAAAAAAATTTATATAA
Found at i:39149211 original size:17 final size:18
Alignment explanation
Indices: 39149191--39149225 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
39149181 TTAAATTAAA
39149191 AATTAAAC-AAAAATAAT
1 AATTAAACTAAAAATAAT
*
39149208 AATTAAACTAAAAGTAAT
1 AATTAAACTAAAAATAAT
39149226 TGAACGTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (18 bp):
AATTAAACTAAAAATAAT
Found at i:39162562 original size:46 final size:48
Alignment explanation
Indices: 39162493--39162685 Score: 169
Period size: 53 Copynumber: 3.9 Consensus size: 48
39162483 TTGCACATTG
* *
39162493 TCACATATCACACACCGAAGCCATAACCCTGCTATGGTCTTACACGG-A
1 TCAC-TATCACACACCGATGCCATAACCCAGCTATGGTCTTACACGGAA
* ** *
39162541 TCAC-ATCACACACCGATGCCATATCCCAAATATGGTCTTATACGGAA
1 TCACTATCACACACCGATGCCATAACCCAGCTATGGTCTTACACGGAA
* *
39162588 TCACATTATCATGTCACACCGATGCCATAGCCCAGCTATGGTCTTATACGAGAA
1 TCAC--TATCA---CACACCGATGCCATAACCCAGCTATGGTCTTACACG-GAA
*
39162642 -CACATATCATATTGCACCGATGCCA-AAGCCCAGCTATGGTCTTA
1 TCAC-TATCACA---CACCGATGCCATAA-CCCAGCTATGGTCTTA
39162686 AACGAGCGCA
Statistics
Matches: 121, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
46 35 0.29
47 5 0.04
48 4 0.03
49 1 0.01
50 4 0.03
51 1 0.01
52 32 0.26
53 36 0.30
54 3 0.02
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (48 bp):
TCACTATCACACACCGATGCCATAACCCAGCTATGGTCTTACACGGAA
Found at i:39162672 original size:52 final size:52
Alignment explanation
Indices: 39162549--39162702 Score: 193
Period size: 52 Copynumber: 2.9 Consensus size: 52
39162539 GATCACATCA
* ** *
39162549 CACACCGATGCCATATCCCAAATATGGTCTTATACG-GAATCACATTATCATGT
1 CACACCGATGCCATAGCCCAGCTATGGTCTTATACGAGAA-CACA-TATCATAT
39162602 CACACCGATGCCATAGCCCAGCTATGGTCTTATACGAGAACACATATCATAT
1 CACACCGATGCCATAGCCCAGCTATGGTCTTATACGAGAACACATATCATAT
** * * **
39162654 TGCACCGATGCCAAAGCCCAGCTATGGTCTTAAACGAGCGCACATATCA
1 CACACCGATGCCATAGCCCAGCTATGGTCTTATACGAGAACACATATCA
39162703 CATATTTTCC
Statistics
Matches: 90, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
52 50 0.56
53 37 0.41
54 3 0.03
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (52 bp):
CACACCGATGCCATAGCCCAGCTATGGTCTTATACGAGAACACATATCATAT
Found at i:39165716 original size:13 final size:13
Alignment explanation
Indices: 39165698--39165724 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
39165688 GGTTTATTAA
39165698 AGGTTTCTCAATG
1 AGGTTTCTCAATG
39165711 AGGTTTCTCAATG
1 AGGTTTCTCAATG
39165724 A
1 A
39165725 TCACTTCACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (13 bp):
AGGTTTCTCAATG
Found at i:39168588 original size:26 final size:26
Alignment explanation
Indices: 39168559--39168666 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
39168549 TGATACAAAT
39168559 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
39168585 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
39168611 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
39168637 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
39168663 TGAT
1 TGAT
39168667 TGGAATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:39173373 original size:15 final size:15
Alignment explanation
Indices: 39173318--39173380 Score: 74
Period size: 15 Copynumber: 4.1 Consensus size: 15
39173308 TTGTACATAA
39173318 TTAAATATTTTTATT
1 TTAAATATTTTTATT
*
39173333 TTGAAT-TTTTTAGTT
1 TTAAATATTTTTA-TT
39173348 GATTAAATATTTTTATT
1 --TTAAATATTTTTATT
*
39173365 TTTAATATTTTTATT
1 TTAAATATTTTTATT
39173380 T
1 T
39173381 ACCTTATTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
14 6 0.15
15 22 0.54
17 7 0.17
18 6 0.15
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (15 bp):
TTAAATATTTTTATT
Found at i:39179195 original size:23 final size:24
Alignment explanation
Indices: 39179169--39179214 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
39179159 TGCATGTTTA
* *
39179169 TTTCTTGTTTTTA-GTTTGTTTTG
1 TTTCCTGTCTTTATGTTTGTTTTG
*
39179192 TTTCCTGTCTTTATTTTTGTTTT
1 TTTCCTGTCTTTATGTTTGTTTT
39179215 TTGTTTTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 11 0.58
24 8 0.42
ACGTcount: A:0.04, C:0.09, G:0.13, T:0.74
Consensus pattern (24 bp):
TTTCCTGTCTTTATGTTTGTTTTG
Found at i:39182506 original size:45 final size:45
Alignment explanation
Indices: 39182456--39182543 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
39182446 CCAAAACATG
39182456 TGTCACATATATCACG-AATTCAGACCACAACTCAATGAGTTCATA
1 TGTCACATATATCACGAAATT-AGACCACAACTCAATGAGTTCATA
*
39182501 TGTCACATATATCATGAAATTAGACCACAACTCAATGAGTTCA
1 TGTCACATATATCACGAAATTAGACCACAACTCAATGAGTTCA
39182544 GATTACATAA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
45 37 0.90
46 4 0.10
ACGTcount: A:0.39, C:0.23, G:0.11, T:0.27
Consensus pattern (45 bp):
TGTCACATATATCACGAAATTAGACCACAACTCAATGAGTTCATA
Found at i:39186109 original size:25 final size:25
Alignment explanation
Indices: 39186075--39186140 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
39186065 CTTGATTTAT
*
39186075 AGCTCATGTGAGCAATCATATTCAC
1 AGCTCATGTGAGCAATCACATTCAC
* *
39186100 AGCTCATGTGAGCAGTTACATTCAC
1 AGCTCATGTGAGCAATCACATTCAC
* **
39186125 AGATTGTGTGAGCAAT
1 AGCTCATGTGAGCAAT
39186141 TTAAGTCTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (25 bp):
AGCTCATGTGAGCAATCACATTCAC
Found at i:39192930 original size:39 final size:39
Alignment explanation
Indices: 39192890--39193066 Score: 300
Period size: 39 Copynumber: 4.5 Consensus size: 39
39192880 ATTCATTTTT
* * *
39192890 AAGCATATATCACATTACACATATAATCACATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
39192929 AAGCATATATCACAATGCTCATATAATTACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
39192968 AAGCATATATCACAAAACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
39193007 AAGCATATATCACAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
39193046 AAGCATATATCACAATACTCA
1 AAGCATATATCACAATACTCA
39193067 AAAACATGTT
Statistics
Matches: 129, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.46, C:0.22, G:0.03, T:0.28
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:39192998 original size:17 final size:17
Alignment explanation
Indices: 39192971--39193037 Score: 55
Period size: 17 Copynumber: 3.7 Consensus size: 17
39192961 AACATTCAAG
39192971 CATAT-ATCACAAAACT
1 CATATAATCACAAAACT
*
39192987 CATATAATCACATAACATT
1 CATATAATCACA-AA-ACT
* *
39193006 CAAGCATATATCACAATACT
1 C-A-TATA-ATCACAAAACT
39193026 CATATAATCACA
1 CATATAATCACA
39193038 TAACATTCAA
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
16 5 0.12
17 12 0.30
18 5 0.12
19 4 0.10
20 4 0.10
21 4 0.10
22 6 0.15
ACGTcount: A:0.48, C:0.24, G:0.01, T:0.27
Consensus pattern (17 bp):
CATATAATCACAAAACT
Found at i:39193127 original size:22 final size:22
Alignment explanation
Indices: 39193099--39193146 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
39193089 GGCGTTTGAG
39193099 CTATGAAACTTAAAAGTGGGCA
1 CTATGAAACTTAAAAGTGGGCA
39193121 CTATGAAACTTAAAAGTGGGCA
1 CTATGAAACTTAAAAGTGGGCA
39193143 CTAT
1 CTAT
39193147 CACCACTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (22 bp):
CTATGAAACTTAAAAGTGGGCA
Found at i:39201047 original size:47 final size:47
Alignment explanation
Indices: 39201018--39201468 Score: 704
Period size: 47 Copynumber: 9.4 Consensus size: 47
39201008 ATACATGAGC
* * *
39201018 TAAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
*
39201065 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTTA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
39201112 TAAGGCCGAATGGCCAATGTGATGATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCC------A--ATGTGATGAATGTGAACATGTATATGTGTGA
* *
39201167 TAAGGCTGAATGGCCAATGTGATGAATGTGAACATGTATATGTGCGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
39201214 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
* * * *
39201261 TAAGGCCGAATGACCAATGTGATGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
*
39201308 TAAGGTCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
* *
39201355 TAAGGCCGAATGGCCAATGTGATGAATATGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
*
39201402 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
39201449 TAAGGCCGAATGGCCAATGT
1 TAAGGCCGAATGGCCAATGT
39201469 TCTAACACCC
Statistics
Matches: 371, Mismatches: 25, Indels: 16
0.90 0.06 0.04
Matches are distributed among these distances:
47 325 0.88
49 1 0.00
53 1 0.00
55 44 0.12
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
Found at i:39202864 original size:40 final size:40
Alignment explanation
Indices: 39202827--39203052 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
39202817 GCTACTCGTT
* *
39202827 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
39202867 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
39202907 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
39202947 CAAATGCCTTC-GGATCTTAGTCCAGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
39202987 CAAATGCCTT-TGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
39203028 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
39203053 CATCATTCAA
Statistics
Matches: 167, Mismatches: 14, Indels: 10
0.87 0.07 0.05
Matches are distributed among these distances:
39 3 0.02
40 152 0.91
41 12 0.07
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:39204755 original size:47 final size:47
Alignment explanation
Indices: 39204686--39204787 Score: 168
Period size: 47 Copynumber: 2.2 Consensus size: 47
39204676 GGCTGTCACA
* * *
39204686 AATGTGATGAATATGAACATGCATATATGTGATAAGGCCGAATGGCC
1 AATGTGATAAATATGAACATGCATACATGTGATAAGGCAGAATGGCC
*
39204733 AATGTGATAAATGTGAACATGCATACATGTGATAAGGCAGAATGGCC
1 AATGTGATAAATATGAACATGCATACATGTGATAAGGCAGAATGGCC
39204780 AATGTGAT
1 AATGTGAT
39204788 GAACGTGGAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.37, C:0.12, G:0.25, T:0.25
Consensus pattern (47 bp):
AATGTGATAAATATGAACATGCATACATGTGATAAGGCAGAATGGCC
Found at i:39204787 original size:22 final size:22
Alignment explanation
Indices: 39204712--39204787 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
39204702 ACATGCATAT
*
39204712 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCAGAATGGCCA
*
39204734 ATGTGATAAATGTG-A-ACAT-GCATA
1 ATGTGAT-AA-G-GCAGA-ATGGC-CA
39204758 CATGTGATAAGGCAGAATGGCCA
1 -ATGTGATAAGGCAGAATGGCCA
39204781 ATGTGAT
1 ATGTGAT
39204788 GAACGTGGAT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.24
Consensus pattern (22 bp):
ATGTGATAAGGCAGAATGGCCA
Found at i:39206388 original size:40 final size:40
Alignment explanation
Indices: 39206333--39206816 Score: 655
Period size: 40 Copynumber: 12.1 Consensus size: 40
39206323 AAGTTCAGTA
*
39206333 TGATATATCCGGGCTAAGTCCTGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
**
39206373 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCACGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * *
39206413 TGATATATCCGGGTTAAGTCCCAAAGAGCATACGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
39206453 TGTTATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
39206493 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
*
39206533 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGCGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
39206573 TGATATATCCGGGTTAAGTCCCGAAGAGCATACGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
39206613 TGTTATATCCGGGCTAAGTCTCGAAAAGCATTCGTGCTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * * * * *
39206653 AGTTATATCAGGGCTAAGTCCCGAATAGCATACGTGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* *
39206693 TG-TCATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGG
1 TGAT-ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * ** * *
39206733 AGTTATATTAGGGTTAAGTCCCGAAGAGCATTCGTACTAG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
* * *
39206773 TGTTATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTGG
1 TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
39206813 TGAT
1 TGAT
39206817 GTGTATTCGG
Statistics
Matches: 388, Mismatches: 54, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
39 1 0.00
40 386 0.99
41 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAG
Found at i:39207028 original size:25 final size:25
Alignment explanation
Indices: 39206978--39207030 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
39206968 TGTGTAACAA
* *
39206978 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
39207003 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
39207028 CAA
1 CAA
39207031 GTTCTTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.30, T:0.21
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:39210031 original size:22 final size:22
Alignment explanation
Indices: 39210004--39210081 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
39209994 ACATGCATAT
39210004 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGCCA
**** *
39210026 ATGTGATAAATATGAACAT-GCATA
1 ATGTGATAAGGCCG-A-ATGGC-CA
39210050 CATGTGATAAGGCCGAATGGCCA
1 -ATGTGATAAGGCCGAATGGCCA
39210073 ATGTGATAA
1 ATGTGATAA
39210082 ATATGAACAT
Statistics
Matches: 41, Mismatches: 10, Indels: 10
0.67 0.16 0.16
Matches are distributed among these distances:
22 19 0.46
23 6 0.15
24 6 0.15
25 10 0.24
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGCCA
Found at i:39210149 original size:47 final size:47
Alignment explanation
Indices: 39209587--39210129 Score: 843
Period size: 47 Copynumber: 11.6 Consensus size: 47
39209577 ATACATGAGC
** * *
39209587 TAAGGCCGAATGGAAAATGTGATGAATGTGAACATGCATTTGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
39209634 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
39209681 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
*
39209728 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
39209775 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
*
39209822 TAAGACCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
* * * *
39209869 TAAGGCTGAATGGCCAACGTGATGAATATGAACATGTATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
**
39209916 TAAGGTTGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
* * * *
39209963 TAAGGCCGAATGGCCAATGTGAAGAATATGAACATGCATATATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
* * * **
39210010 TAAGGCCGAATGGCCAATGTGATAAATATGAACATGCATACATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
* * * **
39210057 TAAGGCCGAATGGCCAATGTGATAAATATGAACATGCATACATGTGA
1 TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
*
39210104 TAAGGCAGAATGGCCAATGTGATGAA
1 TAAGGCCGAATGGCCAATGTGATGAA
39210130 CGTGGATGTG
Statistics
Matches: 469, Mismatches: 27, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 469 1.00
ACGTcount: A:0.35, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
TAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTATATGTGTGA
Found at i:39210162 original size:47 final size:47
Alignment explanation
Indices: 39209556--39210163 Score: 829
Period size: 47 Copynumber: 12.9 Consensus size: 47
39209546 TTAGGATTTT
* ** * * * **
39209556 ATGTGATGGATGTGAATGTGTATACATGAGCTAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
39209603 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
39209650 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
39209697 ATGTGATGAATGTGAACATGTATATGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
39209744 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
39209791 ATGTGATGAATGTGAACATGTATATGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
39209838 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCTGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * **
39209885 ACGTGATGAATATGAACATGTATATATGTGATAAGGTTGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
*
39209932 ATGTGATGAATGTGAACATGTATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
39209979 ATGTGAAGAATATGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * *
39210026 ATGTGATAAATATGAACATGCATACATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * * * *
39210073 ATGTGATAAATATGAACATGCATACATGTGATAAGGCAGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * ** ** *
39210120 ATGTGATGAACGTGGATGTGTATATATGTGGGAAAGCCGAATGG
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGG
39210164 TTAATGCGAA
Statistics
Matches: 514, Mismatches: 47, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 514 1.00
ACGTcount: A:0.34, C:0.11, G:0.28, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:39210196 original size:46 final size:46
Alignment explanation
Indices: 39210143--39210233 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
39210133 GGATGTGTAT
* * *
39210143 ATATGTGGGAAAGCCGAATGGTTAATGCGAAATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
* *
39210189 ATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATG
39210234 TGTATATATA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.35, C:0.07, G:0.31, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAAATATGTATGAGATGG
Found at i:39212030 original size:23 final size:23
Alignment explanation
Indices: 39212003--39212051 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
39211993 GATTAAATGA
39212003 AACGCATTCAACCCACTTAAACT
1 AACGCATTCAACCCACTTAAACT
39212026 AACGCATTCAACCCACTTAAACT
1 AACGCATTCAACCCACTTAAACT
39212049 AAC
1 AAC
39212052 TTGATTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.41, C:0.35, G:0.04, T:0.20
Consensus pattern (23 bp):
AACGCATTCAACCCACTTAAACT
Found at i:39219538 original size:10 final size:10
Alignment explanation
Indices: 39219525--39219555 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
39219515 AAATTAAATG
39219525 TCATGCAGGA
1 TCATGCAGGA
39219535 TCATGCAGGA
1 TCATGCAGGA
39219545 TCATGCAGGA
1 TCATGCAGGA
39219555 T
1 T
39219556 AAAATAAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (10 bp):
TCATGCAGGA
Found at i:39220413 original size:34 final size:34
Alignment explanation
Indices: 39220347--39220414 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
39220337 GCTCAAGCAG
*** **
39220347 AACAATACAGTAGCATTTAATATGCTTTTAACAA
1 AACAATACAGTAGCAAACAATATGCTCATAACAA
39220381 AACAATACAGTAGCAAACAATATGCTCATAACAA
1 AACAATACAGTAGCAAACAATATGCTCATAACAA
39220415 TTCGATTCAG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.49, C:0.18, G:0.09, T:0.25
Consensus pattern (34 bp):
AACAATACAGTAGCAAACAATATGCTCATAACAA
Found at i:39227955 original size:16 final size:16
Alignment explanation
Indices: 39227934--39227966 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
39227924 TTGTAACGAC
39227934 CCAAAAATCCTGAAAT
1 CCAAAAATCCTGAAAT
39227950 CCAAAAATCCTGAAAT
1 CCAAAAATCCTGAAAT
39227966 C
1 C
39227967 TTGAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.48, C:0.27, G:0.06, T:0.18
Consensus pattern (16 bp):
CCAAAAATCCTGAAAT
Found at i:39229467 original size:29 final size:29
Alignment explanation
Indices: 39229402--39229509 Score: 103
Period size: 29 Copynumber: 3.8 Consensus size: 29
39229392 GCATGAGTAT
** *
39229402 AATATGATTTGGGCCTAATGGGCCATATG
1 AATATGAACTGGGCCTAGTGGGCCATATG
** * *
39229431 AAGGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAACTGGGCCTAGTGGGCCATATG
* *
39229460 AATATGAACTAGGCC-AGATGGGCCATTTG
1 AATATGAACTGGGCCTAG-TGGGCCATATG
*
39229489 AATAAG-ACTGGGCCTAGTGGG
1 AATATGAACTGGGCCTAGTGGG
39229510 TTATATGCAT
Statistics
Matches: 64, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
28 13 0.20
29 51 0.80
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (29 bp):
AATATGAACTGGGCCTAGTGGGCCATATG
Found at i:39232396 original size:16 final size:16
Alignment explanation
Indices: 39232375--39232407 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
39232365 TTGTAATGCC
39232375 CCAAAAATCCCGAAAT
1 CCAAAAATCCCGAAAT
*
39232391 CCAAAAATCCTGAAAT
1 CCAAAAATCCCGAAAT
39232407 C
1 C
39232408 TTGAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.30, G:0.06, T:0.15
Consensus pattern (16 bp):
CCAAAAATCCCGAAAT
Found at i:39236759 original size:2 final size:2
Alignment explanation
Indices: 39236752--39236776 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
39236742 GAGAAAAGAA
39236752 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
39236777 AAAGGAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:39241808 original size:51 final size:51
Alignment explanation
Indices: 39241761--39242099 Score: 390
Period size: 51 Copynumber: 6.6 Consensus size: 51
39241751 TGCATATAAT
* * * * *
39241761 ACTTTACATAATTAATATGCACATACTTTGCATAGACAGATCACATATAGA
1 ACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCACACATAGA
* * * *
39241812 AATATACATAATCAGTACACACACACTTTGCATAGACAGTTCACACATAGA
1 ACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCACACATAGA
** * * * *
39241863 ACTTTATGTAATCAGTACGCATAAACTTTGCATAGATAGTTCACACACAGA
1 ACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCACACATAGA
* * * * *
39241914 ACTTTACATAATCAGTTCGCACACACTTTGCATAGATAGTTCACATATAAA
1 ACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCACACATAGA
* * * * * *
39241965 ACTTTACATAATCAGAACACGCACACTTTGCATGGACAATTCACACATAGA
1 ACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCACACATAGA
** *
39242016 ACTTTACATAATCAGTATACACATACTTTGCATAGATAGTTCACACATAGA
1 ACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCACACATAGA
* * *
39242067 ACTTTACATAATCAATACGTATATACTTTGCAT
1 ACTTTACATAATCAGTACGCACATACTTTGCAT
39242100 TGATAGTTAT
Statistics
Matches: 241, Mismatches: 47, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 241 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.29
Consensus pattern (51 bp):
ACTTTACATAATCAGTACGCACATACTTTGCATAGACAGTTCACACATAGA
Found at i:39241878 original size:27 final size:27
Alignment explanation
Indices: 39241801--39242080 Score: 143
Period size: 27 Copynumber: 10.9 Consensus size: 27
39241791 CATAGACAGA
* * *
39241801 TCACATATAGAAATATACATAATCAG-
1 TCACACATAGAACTTTACATAATCAGT
* * *
39241827 T-ACACACA-CACTTTGCATAGA-CAGT
1 TCACACATAGAACTTTACATA-ATCAGT
**
39241852 TCACACATAGAACTTTATGTAATCAG-
1 TCACACATAGAACTTTACATAATCAGT
* *
39241878 T-ACGCATA-AACTTTGCATAGAT-AGT
1 TCACACATAGAACTTTACATA-ATCAGT
*
39241903 TCACACACAGAACTTTACATAATCAGT
1 TCACACATAGAACTTTACATAATCAGT
* * *
39241930 TCGCAC--A-CACTTTGCATAGAT-AGT
1 TCACACATAGAACTTTACATA-ATCAGT
* *
39241954 TCACATATAAAACTTTACATAATCAG-
1 TCACACATAGAACTTTACATAATCAGT
* ** * * * *
39241980 -AACACGCA-CACTTTGCATGGA-CAAT
1 TCACACATAGAACTTTACAT-AATCAGT
39242005 TCACACATAGAACTTTACATAATCAGT
1 TCACACATAGAACTTTACATAATCAGT
*
39242032 AT-ACACAT---ACTTTGCATAGAT-AGT
1 -TCACACATAGAACTTTACATA-ATCAGT
39242056 TCACACATAGAACTTTACATAATCA
1 TCACACATAGAACTTTACATAATCA
39242081 ATACGTATAT
Statistics
Matches: 185, Mismatches: 42, Indels: 53
0.66 0.15 0.19
Matches are distributed among these distances:
23 1 0.01
24 64 0.35
25 26 0.14
26 27 0.15
27 66 0.36
28 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (27 bp):
TCACACATAGAACTTTACATAATCAGT
Found at i:39241947 original size:24 final size:25
Alignment explanation
Indices: 39241818--39242062 Score: 98
Period size: 24 Copynumber: 9.7 Consensus size: 25
39241808 TAGAAATATA
*
39241818 CATA-ATCAGTACACACACACTTTG
1 CATAGATCAGTTCACACACACTTTG
* *
39241842 CATAGA-CAGTTCACACATAGAACTTTA
1 CATAGATCAGTTCACAC--A-CACTTTG
** * * * *
39241869 TGTA-ATCAGTACGCATAAACTTTG
1 CATAGATCAGTTCACACACACTTTG
*
39241893 CATAGAT-AGTTCACACACAGAACTTTA
1 CATAGATCAGTTCACACAC---ACTTTG
*
39241920 CATA-ATCAGTTCGCACACACTTTG
1 CATAGATCAGTTCACACACACTTTG
* * *
39241944 CATAGAT-AGTTCACATATAAAACTTTA
1 CATAGATCAGTTCAC--A-CACACTTTG
** *
39241971 CATA-ATCAGAACACGCACACTTTG
1 CATAGATCAGTTCACACACACTTTG
* * * *
39241995 CATGGA-CAATTCACACATAGAACTTTA
1 CATAGATCAGTTCACAC--A-CACTTTG
*
39242022 CATA-ATCAGTAT-ACACATACTTTG
1 CATAGATCAGT-TCACACACACTTTG
39242046 CATAGAT-AGTTCACACA
1 CATAGATCAGTTCACACA
39242063 TAGAACTTTA
Statistics
Matches: 159, Mismatches: 39, Indels: 46
0.65 0.16 0.19
Matches are distributed among these distances:
23 1 0.01
24 75 0.47
25 10 0.06
26 9 0.06
27 63 0.40
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (25 bp):
CATAGATCAGTTCACACACACTTTG
Found at i:39242028 original size:153 final size:153
Alignment explanation
Indices: 39241761--39242107 Score: 473
Period size: 153 Copynumber: 2.3 Consensus size: 153
39241751 TGCATATAAT
* * *
39241761 ACTTTACATAATTAATAT-GCACATACTTTGCATAGACAGATCACATATAGAAATATACATAATC
1 ACTTTACATAATCAAT-TCGCACATACTTTGCATAGATAGTTCACATATAGAAATATACATAATC
* * ** * *
39241825 AGTACACACACACTTTGCATAGACAGTTCACACATAGAACTTTATGTAATCAGTACGCATAAACT
65 AGAACACACACACTTTGCATAGACAATTCACACATAGAACTTTACATAATCAGTACACACAAACT
39241890 TTGCATAGATAGTTCACACACAGA
130 TTGCATAGATAGTTCACACACAGA
* * *
39241914 ACTTTACATAATCAGTTCGCACACACTTTGCATAGATAGTTCACATATA-AAACTTTACATAATC
1 ACTTTACATAATCAATTCGCACATACTTTGCATAGATAGTTCACATATAGAAA-TATACATAATC
* * * *
39241978 AGAACACGCACACTTTGCATGGACAATTCACACATAGAACTTTACATAATCAGTATACACATACT
65 AGAACACACACACTTTGCATAGACAATTCACACATAGAACTTTACATAATCAGTACACACAAACT
*
39242043 TTGCATAGATAGTTCACACATAGA
130 TTGCATAGATAGTTCACACACAGA
* * * *
39242067 ACTTTACATAATCAATACGTATATACTTTGCATTGATAGTT
1 ACTTTACATAATCAATTCGCACATACTTTGCATAGATAGTT
39242108 ATGTTGGATC
Statistics
Matches: 169, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
152 4 0.02
153 165 0.98
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (153 bp):
ACTTTACATAATCAATTCGCACATACTTTGCATAGATAGTTCACATATAGAAATATACATAATCA
GAACACACACACTTTGCATAGACAATTCACACATAGAACTTTACATAATCAGTACACACAAACTT
TGCATAGATAGTTCACACACAGA
Found at i:39245694 original size:21 final size:21
Alignment explanation
Indices: 39245665--39245709 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
39245655 TTATTCATGA
*
39245665 ATTATATTAATACTTTGTATT
1 ATTACATTAATACTTTGTATT
39245686 ATTACATTAATACTTTGTATT
1 ATTACATTAATACTTTGTATT
39245707 ATT
1 ATT
39245710 GTTCTCAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (21 bp):
ATTACATTAATACTTTGTATT
Found at i:39250156 original size:21 final size:23
Alignment explanation
Indices: 39250131--39250172 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
39250121 GAAATAGAAA
*
39250131 AAATCATAA-TAAA-CTTCAAAG
1 AAATCAAAAGTAAATCTTCAAAG
39250152 AAATCAAAAGTAAATCTTCAA
1 AAATCAAAAGTAAATCTTCAA
39250173 TCTTGATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 4 0.22
23 6 0.33
ACGTcount: A:0.57, C:0.14, G:0.05, T:0.24
Consensus pattern (23 bp):
AAATCAAAAGTAAATCTTCAAAG
Found at i:39255644 original size:14 final size:14
Alignment explanation
Indices: 39255625--39255651 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
39255615 TTATTGTGCA
39255625 AAAGAAATTATTTT
1 AAAGAAATTATTTT
39255639 AAAGAAATTATTT
1 AAAGAAATTATTT
39255652 AATCATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (14 bp):
AAAGAAATTATTTT
Found at i:39265253 original size:47 final size:47
Alignment explanation
Indices: 39265195--39265545 Score: 540
Period size: 47 Copynumber: 7.5 Consensus size: 47
39265185 ATTCAGCCAA
*
39265195 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
39265242 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
39265289 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
39265336 GAAAGTGTATATGTGTGATAAGGCCTAATCGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
39265383 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
39265430 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* * * * * * * * *
39265477 GAAAGTGTGTATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
* *
39265524 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
39265546 TCTCGAAGGG
Statistics
Matches: 283, Mismatches: 21, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 283 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
Found at i:39269567 original size:42 final size:42
Alignment explanation
Indices: 39269506--39269619 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
39269496 TTTGACATTA
*
39269506 CTTGTAAGACCATATCTGGGATATGGCATCGATATGAGGAT-T
1 CTTGTAAGACCATATCTGGGATATGGCATCGATACGA-GATCT
* * * * *
39269548 TTTGTAAGACCATAGCTGGGCTATTAGCATCGATGCGAGATCT
1 CTTGTAAGACCATATCTGGGATA-TGGCATCGATACGAGATCT
* *
39269591 CATGTAAGACCGTATCTGGGATATGGCAT
1 CTTGTAAGACCATATCTGGGATATGGCAT
39269620 TGTTATGGTA
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 28 0.48
43 30 0.52
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (42 bp):
CTTGTAAGACCATATCTGGGATATGGCATCGATACGAGATCT
Found at i:39270896 original size:10 final size:10
Alignment explanation
Indices: 39270869--39270928 Score: 61
Period size: 10 Copynumber: 6.0 Consensus size: 10
39270859 TTAAATTCTA
39270869 AAAGATAAAT
1 AAAGATAAAT
39270879 ACAA-ATAAAT
1 A-AAGATAAAT
*
39270889 AAAGATAATT
1 AAAGATAAAT
*
39270899 AAGGAT-AAT
1 AAAGATAAAT
39270908 GAAAGATAAAT
1 -AAAGATAAAT
*
39270919 AAAAATAAAT
1 AAAGATAAAT
39270929 CCTAAATTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
9 4 0.10
10 32 0.78
11 5 0.12
ACGTcount: A:0.67, C:0.02, G:0.10, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:39270961 original size:13 final size:13
Alignment explanation
Indices: 39270945--39270969 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39270935 TTTAAATCTA
39270945 AATAATTATCCTT
1 AATAATTATCCTT
39270958 AATAATTATCCT
1 AATAATTATCCT
39270970 AGTATAATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
AATAATTATCCTT
Found at i:39271547 original size:7 final size:7
Alignment explanation
Indices: 39271535--39271576 Score: 57
Period size: 7 Copynumber: 5.7 Consensus size: 7
39271525 ATATCCTCCC
39271535 TTTTTTA
1 TTTTTTA
39271542 TTTTTTA
1 TTTTTTA
39271549 TTTTTTTA
1 -TTTTTTA
*
39271557 TTTTTAA
1 TTTTTTA
39271564 TTTATTTA
1 TTT-TTTA
39271572 TTTTT
1 TTTTT
39271577 ACTTAGGAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
7 18 0.58
8 13 0.42
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTTTA
Found at i:39271553 original size:8 final size:8
Alignment explanation
Indices: 39271535--39271576 Score: 52
Period size: 8 Copynumber: 5.5 Consensus size: 8
39271525 ATATCCTCCC
39271535 TTTTTTA-
1 TTTTTTAT
39271542 TTTTTTAT
1 TTTTTTAT
39271550 TTTTTTA-
1 TTTTTTAT
*
39271557 TTTTTAAT
1 TTTTTTAT
*
39271565 TTATTTAT
1 TTTTTTAT
39271573 TTTT
1 TTTT
39271577 ACTTAGGAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
7 13 0.45
8 16 0.55
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTTAT
Found at i:39271555 original size:15 final size:15
Alignment explanation
Indices: 39271535--39271577 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
39271525 ATATCCTCCC
*
39271535 TTTTTTATTTTTTAT
1 TTTTTTATTTTTAAT
39271550 TTTTTTATTTTTAAT
1 TTTTTTATTTTTAAT
*
39271565 TTATTTATTTTTA
1 TTTTTTATTTTTA
39271578 CTTAGGAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTTTATTTTTAAT
Found at i:39271733 original size:96 final size:97
Alignment explanation
Indices: 39271568--39271751 Score: 289
Period size: 96 Copynumber: 1.9 Consensus size: 97
39271558 TTTTAATTTA
* * * * *
39271568 TTTATTTTTACTTAGGAATATATTGAGCCTTTTGACGCAAAGAGAGATGACAGCCAAGCACCCCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCAAAGAAAGATGACAGCCAAGCACCCCA
39271633 CCCCGATTACTCAGCCCAACACACTCCTAATT
66 CCCCGATTACTCAGCCCAACACACTCCTAATT
* *
39271665 TTTATTTTT-CTTAAGAACATATCGAACCTTTTGACGCAAAGAAAGATGACAGCCGAGCACCTCA
1 TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCAAAGAAAGATGACAGCCAAGCACCCCA
*
39271729 CCCCGGTTACTCAGCCCAACACA
66 CCCCGATTACTCAGCCCAACACA
39271752 TTTTTAAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
96 70 0.89
97 9 0.11
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.26
Consensus pattern (97 bp):
TTTATTTTTACTTAAGAACATATCGAACCTTTTGACGCAAAGAAAGATGACAGCCAAGCACCCCA
CCCCGATTACTCAGCCCAACACACTCCTAATT
Found at i:39275904 original size:29 final size:29
Alignment explanation
Indices: 39275868--39275926 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
39275858 TCATTAATTA
39275868 TAAATTCAGTTTTATCTTCATAAATTGAC
1 TAAATTCAGTTTTATCTTCATAAATTGAC
39275897 TAAATTCAGTTTTATCTTCATAAATTGAC
1 TAAATTCAGTTTTATCTTCATAAATTGAC
39275926 T
1 T
39275927 CAAAAGTCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.46
Consensus pattern (29 bp):
TAAATTCAGTTTTATCTTCATAAATTGAC
Found at i:39279243 original size:10 final size:10
Alignment explanation
Indices: 39279228--39279277 Score: 73
Period size: 10 Copynumber: 5.0 Consensus size: 10
39279218 TTAAATTCTA
39279228 AAAAATAAAT
1 AAAAATAAAT
*
39279238 ACAAATAAAT
1 AAAAATAAAT
*
39279248 AAAAATAATT
1 AAAAATAAAT
*
39279258 AAAGATAAAT
1 AAAAATAAAT
39279268 AAAAATAAAT
1 AAAAATAAAT
39279278 CCTAAATTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 34 1.00
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:39283226 original size:3 final size:3
Alignment explanation
Indices: 39283218--39283267 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
39283208 AAGTAAACTC
39283218 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
39283266 TC
1 TC
39283268 ACATCAAAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:39284367 original size:16 final size:15
Alignment explanation
Indices: 39284317--39284375 Score: 50
Period size: 16 Copynumber: 3.9 Consensus size: 15
39284307 TGTTTAGAAA
39284317 TTTTAAAGAAAATTAT
1 TTTTAAAGAAAA-TAT
***
39284333 TTTTTTTGAAAA-A-
1 TTTTAAAGAAAATAT
39284346 TTTTAAAGAAAATCAT
1 TTTTAAAGAAAAT-AT
*
39284362 TTTTAAAAAAAATA
1 TTTTAAAGAAAATA
39284376 ACTCGAACAA
Statistics
Matches: 33, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
13 9 0.27
14 1 0.03
15 2 0.06
16 21 0.64
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.42
Consensus pattern (15 bp):
TTTTAAAGAAAATAT
Found at i:39284373 original size:28 final size:29
Alignment explanation
Indices: 39284314--39284374 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
39284304 TCATGTTTAG
* ***
39284314 AAATTTTAAAGAAAATTATTTTTTTTGAA
1 AAATTTTAAAGAAAATCATTTTTTAAAAA
39284343 AAATTTTAAAGAAAATCA-TTTTTAAAAA
1 AAATTTTAAAGAAAATCATTTTTTAAAAA
39284371 AAAT
1 AAAT
39284375 AACTCGAACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 11 0.39
29 17 0.61
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (29 bp):
AAATTTTAAAGAAAATCATTTTTTAAAAA
Found at i:39292752 original size:15 final size:16
Alignment explanation
Indices: 39292728--39292765 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
39292718 GTATTAAAAA
39292728 TAAA-AAAAAACA-AT
1 TAAAGAAAAAACAGAT
39292742 TAAAGAAAAAACAGAT
1 TAAAGAAAAAACAGAT
*
39292758 AAAAGAAA
1 TAAAGAAA
39292766 TTGTTAACTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.19
15 8 0.38
16 9 0.43
ACGTcount: A:0.76, C:0.05, G:0.08, T:0.11
Consensus pattern (16 bp):
TAAAGAAAAAACAGAT
Found at i:39296905 original size:29 final size:29
Alignment explanation
Indices: 39296872--39296929 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
39296862 TAATGACTTA
*
39296872 GTTTCCAGTGGTGTCAAAAAATGCAATTT
1 GTTTCCAGTGGTGTCAAAAAATACAATTT
39296901 GTTTCCAGTGGTGTCAAAAAATACAATTT
1 GTTTCCAGTGGTGTCAAAAAATACAATTT
39296930 CAGAACCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.19, T:0.34
Consensus pattern (29 bp):
GTTTCCAGTGGTGTCAAAAAATACAATTT
Found at i:39300594 original size:17 final size:17
Alignment explanation
Indices: 39300572--39300618 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 17
39300562 CTAAATCAAA
39300572 TATAAATAAAATATAAG
1 TATAAATAAAATATAAG
*
39300589 TATAAAT--AATATAAT
1 TATAAATAAAATATAAG
39300604 TAATAAATATAAATA
1 T-ATAAATA-AAATA
39300619 ATGTAATTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
15 8 0.32
16 6 0.24
17 7 0.28
19 4 0.16
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
TATAAATAAAATATAAG
Found at i:39300609 original size:22 final size:22
Alignment explanation
Indices: 39300584--39300626 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
39300574 TAAATAAAAT
*
39300584 ATAAGTATAAATAATATAATTA
1 ATAAATATAAATAATATAATTA
*
39300606 ATAAATATAAATAATGTAATT
1 ATAAATATAAATAATATAATT
39300627 CAAAAAGGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (22 bp):
ATAAATATAAATAATATAATTA
Found at i:39311868 original size:40 final size:40
Alignment explanation
Indices: 39311815--39311957 Score: 209
Period size: 40 Copynumber: 3.6 Consensus size: 40
39311805 ACTACTTGCT
*
39311815 CAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTAGCA
* *
39311855 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTAGCA
* *
39311895 CAAATGCCTTC-GGAGCTTAGCCC-GGAATTAGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGGTA-TAGTAACTAGCA
39311935 CAAATGCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
39311958 AGTTATCATC
Statistics
Matches: 94, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
39 5 0.05
40 86 0.91
41 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGGTATAGTAACTAGCA
Found at i:39311915 original size:80 final size:80
Alignment explanation
Indices: 39311783--39311957 Score: 232
Period size: 80 Copynumber: 2.2 Consensus size: 80
39311773 ACCCAAGCAT
* * *
39311783 CTTCGGGATTTAG-CCGAATATAACTACTTGCTCAAATGCCTTCGGGACTTAGCCCGG-GTATAG
1 CTTCGGGACTTAGCCCGAATATAACTACTTGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
*
39311846 TAACTCGCACAAATGC
65 TAACTAGCACAAATGC
* *
39311862 CTTCGGGACTTAGCCCGGATAT-AGTAACTTGCACAAATGCCTTC-GGAGCTTAGCCCGGAATTA
1 CTTCGGGACTTAGCCCGAATATAACT-ACTTGCACAAATGCCTTCGGGA-CTTAGCCCGGAATTA
*
39311925 GTCACTAGCACAAATGC
64 GTAACTAGCACAAATGC
39311942 CTTCGGGACTTAGCCC
1 CTTCGGGACTTAGCCC
39311958 AGTTATCATC
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
79 17 0.20
80 67 0.79
81 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGAATATAACTACTTGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTAGCACAAATGC
Found at i:39317219 original size:16 final size:16
Alignment explanation
Indices: 39317148--39317219 Score: 101
Period size: 16 Copynumber: 4.6 Consensus size: 16
39317138 ACAACTAAAT
* *
39317148 TATT-CATTAAAGGTC
1 TATTCCATTACAGCTC
*
39317163 TATTCTATTACAGCTC
1 TATTCCATTACAGCTC
39317179 TATTCCATTACAGCTC
1 TATTCCATTACAGCTC
*
39317195 TATTACATTACAGCTC
1 TATTCCATTACAGCTC
39317211 TATTCCATT
1 TATTCCATT
39317220 CCCCCCAACC
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
15 4 0.08
16 46 0.92
ACGTcount: A:0.28, C:0.24, G:0.07, T:0.42
Consensus pattern (16 bp):
TATTCCATTACAGCTC
Found at i:39326581 original size:23 final size:23
Alignment explanation
Indices: 39326555--39326600 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
39326545 AATTGGCTAG
39326555 ACCAAAAATTTTAAAAATTTTAT
1 ACCAAAAATTTTAAAAATTTTAT
39326578 ACCAAAAATTTTAAAAATTTTAT
1 ACCAAAAATTTTAAAAATTTTAT
39326601 GGTAAGAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (23 bp):
ACCAAAAATTTTAAAAATTTTAT
Found at i:39331988 original size:21 final size:22
Alignment explanation
Indices: 39331963--39332004 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
39331953 GCACTTTTTA
39331963 AAAATTTA-AAAA-ATTATAAAC
1 AAAATTTATAAAACATT-TAAAC
39331984 AAAATTTATAAAACATTTAAA
1 AAAATTTATAAAACATTTAAA
39332005 ATTATAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.42
22 8 0.42
23 3 0.16
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATTTATAAAACATTTAAAC
Found at i:39350535 original size:12 final size:12
Alignment explanation
Indices: 39350518--39350547 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
39350508 AAAACATAAT
39350518 TTGAAATATTTA
1 TTGAAATATTTA
39350530 TTGAAATATTTA
1 TTGAAATATTTA
39350542 TTGAAA
1 TTGAAA
39350548 GAAATTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (12 bp):
TTGAAATATTTA
Done.