Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 134 of 290
Found at i:42147972 original size:55 final size:55
Alignment explanation
Indices: 42147888--42147997 Score: 220
Period size: 55 Copynumber: 2.0 Consensus size: 55
42147878 ATATGTCTGC
42147888 TTAGAAGTATTTGAGGAAAGGATGTGAAGTTTATTTGGCTTTTGTAATGAATACT
1 TTAGAAGTATTTGAGGAAAGGATGTGAAGTTTATTTGGCTTTTGTAATGAATACT
42147943 TTAGAAGTATTTGAGGAAAGGATGTGAAGTTTATTTGGCTTTTGTAATGAATACT
1 TTAGAAGTATTTGAGGAAAGGATGTGAAGTTTATTTGGCTTTTGTAATGAATACT
42147998 AAGGAATCAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.40
Consensus pattern (55 bp):
TTAGAAGTATTTGAGGAAAGGATGTGAAGTTTATTTGGCTTTTGTAATGAATACT
Found at i:42155734 original size:51 final size:51
Alignment explanation
Indices: 42155670--42155805 Score: 155
Period size: 51 Copynumber: 2.7 Consensus size: 51
42155660 TGGAAACATG
*
42155670 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* * * ** * * ** *
42155721 ATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGTA
1 ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
* *
42155772 ATCTTAGAAGATATGATATTATATTCTTAGAGAT
1 ATCTTAAAAGATATGATATTATAATCTTAGAGAT
42155806 TTGATGGTAG
Statistics
Matches: 66, Mismatches: 19, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.41
Consensus pattern (51 bp):
ATCTTAAAAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGA
Found at i:42167307 original size:47 final size:48
Alignment explanation
Indices: 42167256--42167465 Score: 221
Period size: 47 Copynumber: 4.6 Consensus size: 48
42167246 ACATGTTTAA
* * *
42167256 CGTGGTATATCCATTTACCACTACGTTA-ATGAATCAATATATGTAAC
1 CGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATGTAAC
* * *
42167303 CGTGGCATATCCACTTAGCACCATGTTATATG--T---T-TA-G---C
1 CGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATGTAAC
*
42167341 CGTGGTATATCCACTTAGCACAACGTTA-ATGAATCAATATATGTAAC
1 CGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATGTAAC
* * *
42167388 CGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATC
1 CGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATGTAA-C
*
42167437 C-TGGTATATCCACTTAGCACCACATTACA
1 CGTGGTATATCCACTTAGCACCACGTTACA
42167466 CGTATAACCG
Statistics
Matches: 136, Mismatches: 14, Indels: 25
0.78 0.08 0.14
Matches are distributed among these distances:
37 3 0.02
38 26 0.19
39 1 0.01
41 1 0.01
42 3 0.02
43 3 0.02
44 1 0.01
46 1 0.01
47 50 0.37
48 45 0.33
49 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (48 bp):
CGTGGTATATCCACTTAGCACCACGTTACATGAATCAATATATGTAAC
Found at i:42167388 original size:85 final size:84
Alignment explanation
Indices: 42167215--42167420 Score: 349
Period size: 85 Copynumber: 2.4 Consensus size: 84
42167205 TTAACATGTA
* *
42167215 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTAACGTGGTATATCCATTTACCACTAC
1 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTAACGTGGTATATCCACTTACCACAAC
42167280 GTTAATGAATCAATATATG
66 GTTAATGAATCAATATATG
* * *
42167299 TAACCGTGGCATATCCACTTAGCACCATGTTATATGTTTAGCCGTGGTATATCCACTTAGCACAA
1 TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTA-ACGTGGTATATCCACTTACCACAA
42167364 CGTTAATGAATCAATATATG
65 CGTTAATGAATCAATATATG
*
42167384 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACCGTGGCATATCCACTTAGCACCATGTTACATGT
42167421 ATCAATATGT
Statistics
Matches: 114, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
84 39 0.34
85 75 0.66
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.32
Consensus pattern (84 bp):
TAACCGTGGCATATCCACTTAGCACCATGTTACATGTTTAACGTGGTATATCCACTTACCACAAC
GTTAATGAATCAATATATG
Found at i:42167427 original size:48 final size:49
Alignment explanation
Indices: 42167340--42167470 Score: 187
Period size: 48 Copynumber: 2.7 Consensus size: 49
42167330 ATATGTTTAG
* *
42167340 CCGTGGTATATCCACTTAGCACAACGTTA-ATGAATCAATATATGTAA-
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAAT
* *
42167387 CCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAAT
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAAT
* *
42167436 CC-TGGTATATCCACTTAGCACCACATTACACGTAT
1 CCGTGGTATATCCACTTAGCACCACGTTACATGTAT
42167471 AACCGTGGTA
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
47 27 0.36
48 46 0.61
49 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (49 bp):
CCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATGTAAT
Found at i:42167434 original size:133 final size:132
Alignment explanation
Indices: 42167256--42167494 Score: 327
Period size: 133 Copynumber: 1.8 Consensus size: 132
42167246 ACATGTTTAA
* * *
42167256 CGTGGTATATCCATTTACCACTACGTTAATGAATCAATATATGTAA-CCGTGGCATATCCACTTA
1 CGTGGCATATCCACTTACCACCACGTTAATGAATCAATATATGTAATCC-TGGCATATCCACTTA
** * * * *
42167320 GCACCATGTTATATGTTTAGCCGTGGTATATCCACTTAGCACAACGTTAATGAATCAATATATGT
65 GCACCACATTACACGTATAACCGTGGTATATCCACTTAGCACAACGTTAATGAATCAATATATGT
42167385 AAC
130 AAC
* * * *
42167388 CGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTGTAATCCTGGTATATCCACTTA
1 CGTGGCATATCCACTTACCACCACGTTA-ATGAATCAATATATGTAATCCTGGCATATCCACTTA
*
42167453 GCACCACATTACACGTATAACCGTGGTATTTCCACTTAGCAC
65 GCACCACATTACACGTATAACCGTGGTATATCCACTTAGCAC
42167495 CACATTTTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
132 24 0.26
133 65 0.71
134 2 0.02
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (132 bp):
CGTGGCATATCCACTTACCACCACGTTAATGAATCAATATATGTAATCCTGGCATATCCACTTAG
CACCACATTACACGTATAACCGTGGTATATCCACTTAGCACAACGTTAATGAATCAATATATGTA
AC
Found at i:42174423 original size:35 final size:35
Alignment explanation
Indices: 42174383--42174588 Score: 186
Period size: 35 Copynumber: 5.9 Consensus size: 35
42174373 AGGTAAGTAT
*
42174383 ATGTGAGGTTATATTGAACTTGTGTATTCGGTTGA-
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTT-AC
* *
42174418 ATGTGAGGTTATATTGAACTTGTGTATTCGATTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
** *
42174453 ATGTGATCTTATATTGAACTTGTATATTCTGTTAC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * *
42174488 ATGTGAGATTATATTGAATTTGTATATTCAG--AC
1 ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
* * * * **
42174521 ATATGAGATGTTTTATTGAACTTG-AGCATTAGACTAC
1 ATGTGAG--GTTATATTGAACTTGTA-TATTCGGTTAC
* * *
42174558 ATGTGATGATATATTGAACTTATATATTCGG
1 ATGTGAGGTTATATTGAACTTGTATATTCGG
42174589 CTATATGAAA
Statistics
Matches: 138, Mismatches: 26, Indels: 14
0.78 0.15 0.08
Matches are distributed among these distances:
33 8 0.06
34 2 0.01
35 120 0.87
36 1 0.01
37 7 0.05
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (35 bp):
ATGTGAGGTTATATTGAACTTGTATATTCGGTTAC
Found at i:42180861 original size:46 final size:46
Alignment explanation
Indices: 42180805--42180933 Score: 170
Period size: 46 Copynumber: 2.8 Consensus size: 46
42180795 TATTTGGACA
* *
42180805 TCTGAGCTCGTTGAGTTGAG-CCTGAGTTCACTTATGGATGGGAATG
1 TCTGAGCTCGTTGAGTTGAGTCC-GAGTTCACTTATGGATGCGAACG
* *
42180851 TCTGAACTCGTTGAGTTGAGTCCGAGTTGACTTATGGATGCGAACG
1 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
42180897 CCTGAGCTCATTGAGTTGAGTCCGAATTCGCTTATGG
1 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
42180934 GCAGGTTACA
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
46 70 0.97
47 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (46 bp):
TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:42192364 original size:25 final size:25
Alignment explanation
Indices: 42192329--42192378 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
42192319 AGTTGTCAAG
42192329 AAAAAATTTTCTAAAGAAATTATTTC
1 AAAAAATTTTCTAAAGAAATT-TTTC
*
42192355 AAAAAA-TTTCTAAAGATATTTTTC
1 AAAAAATTTTCTAAAGAAATTTTTC
42192379 TTATTTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 13 0.57
26 6 0.26
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (25 bp):
AAAAAATTTTCTAAAGAAATTTTTC
Found at i:42207683 original size:46 final size:46
Alignment explanation
Indices: 42207631--42207803 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
42207621 TGGTTGAGCA
*
42207631 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
42207677 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
42207724 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
42207770 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
42207804 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 28 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:42207787 original size:93 final size:93
Alignment explanation
Indices: 42207628--42207798 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
42207618 GGATGGTTGA
* **
42207628 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
42207693 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
42207721 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
42207786 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
42207799 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:42208065 original size:19 final size:20
Alignment explanation
Indices: 42208028--42208065 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
42208018 ATAAGGTGGT
42208028 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
42208048 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
42208066 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:42228393 original size:22 final size:22
Alignment explanation
Indices: 42228368--42228423 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
42228358 AATTGTTTGG
*
42228368 TGACATCACAATGTAGAAGAGA
1 TGACATCACAACGTAGAAGAGA
***
42228390 TGACATCATGGCGTAGAAGAGA
1 TGACATCACAACGTAGAAGAGA
*
42228412 TGACACCACAAC
1 TGACATCACAAC
42228424 TTCAGACCTA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.41, C:0.20, G:0.23, T:0.16
Consensus pattern (22 bp):
TGACATCACAACGTAGAAGAGA
Found at i:42230744 original size:13 final size:13
Alignment explanation
Indices: 42230710--42230744 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
42230700 GTTATTCGTT
*
42230710 ATTCTCATAAATA
1 ATTCTCAAAAATA
42230723 ATGTCTCAAAAATA
1 AT-TCTCAAAAATA
42230737 ATTCTCAA
1 ATTCTCAA
42230745 GCAATCATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.46, C:0.17, G:0.03, T:0.34
Consensus pattern (13 bp):
ATTCTCAAAAATA
Found at i:42232430 original size:25 final size:26
Alignment explanation
Indices: 42232400--42232453 Score: 83
Period size: 25 Copynumber: 2.1 Consensus size: 26
42232390 AGCCCACTAA
42232400 AAACCCAAACACCCCAAA-ACAACCC
1 AAACCCAAACACCCCAAATACAACCC
* *
42232425 AAACCCACACAGCCCAAATACAACCC
1 AAACCCAAACACCCCAAATACAACCC
42232451 AAA
1 AAA
42232454 ATCAAAAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 16 0.62
26 10 0.38
ACGTcount: A:0.52, C:0.44, G:0.02, T:0.02
Consensus pattern (26 bp):
AAACCCAAACACCCCAAATACAACCC
Found at i:42233597 original size:7 final size:7
Alignment explanation
Indices: 42233569--42233607 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
42233559 ACTACTATAG
42233569 TTTATTA
1 TTTATTA
42233576 -TTATTA
1 TTTATTA
42233582 -TTA-TA
1 TTTATTA
42233587 TTTATTA
1 TTTATTA
42233594 TTTATTA
1 TTTATTA
42233601 TTTATTA
1 TTTATTA
42233608 GCATTGGTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
5 2 0.07
6 12 0.40
7 16 0.53
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TTTATTA
Found at i:42233805 original size:29 final size:28
Alignment explanation
Indices: 42233751--42233815 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 28
42233741 ATGCATATAC
42233751 ATATTA-ACATTATTATGTATGTTTTTAA
1 ATATTATACATTATTATGTA-GTTTTTAA
*
42233779 ATATTATACATATATATATGTA-TTTTTAT
1 ATATTATACAT-TAT-TATGTAGTTTTTAA
42233808 ATATTATA
1 ATATTATA
42233816 TCGTGTACAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
28 6 0.18
29 18 0.55
30 3 0.09
31 6 0.18
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (28 bp):
ATATTATACATTATTATGTAGTTTTTAA
Found at i:42234429 original size:3 final size:3
Alignment explanation
Indices: 42234421--42234457 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
42234411 ATCTCACTTT
* *
42234421 TTA TTA TTA TTA CTA TTA TTA TTA TTA TCA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
42234458 AGTTCGCGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:42236855 original size:16 final size:13
Alignment explanation
Indices: 42236839--42236872 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
42236829 ACTAAGTAAT
42236839 AATAATATAA-GAA
1 AATAATA-AATGAA
42236852 AATAATAAATGAA
1 AATAATAAATGAA
42236865 AATAATAA
1 AATAATAA
42236873 CAATAACTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 2 0.10
13 18 0.90
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.24
Consensus pattern (13 bp):
AATAATAAATGAA
Found at i:42236950 original size:15 final size:14
Alignment explanation
Indices: 42236926--42237042 Score: 65
Period size: 15 Copynumber: 7.4 Consensus size: 14
42236916 CAGATACTAC
42236926 TAAAACTAAAAATAA
1 TAAAA-TAAAAATAA
42236941 TAACAATAAAATAATAA
1 TAA-AAT-AAA-AATAA
42236958 TAAAACTAAGAAATATA
1 TAAAA-TAA-AAATA-A
*
42236975 GGAAAAATAAAACA-AA
1 --TAAAATAAAA-ATAA
*
42236991 TAATAATAAATATAA
1 TAA-AATAAAAATAA
42237006 TAACAATAAATAATAA
1 TAA-AATAAA-AATAA
*
42237022 TTAAAATAATAATAAA
1 -TAAAATAAAAAT-AA
42237038 TAAAA
1 TAAAA
42237043 AGAAACAAAG
Statistics
Matches: 82, Mismatches: 6, Indels: 28
0.71 0.05 0.24
Matches are distributed among these distances:
14 3 0.04
15 29 0.35
16 25 0.30
17 17 0.21
18 4 0.05
19 4 0.05
ACGTcount: A:0.70, C:0.04, G:0.03, T:0.23
Consensus pattern (14 bp):
TAAAATAAAAATAA
Found at i:42237005 original size:9 final size:10
Alignment explanation
Indices: 42236939--42237040 Score: 56
Period size: 9 Copynumber: 10.5 Consensus size: 10
42236929 AACTAAAAAT
*
42236939 AATAACAATAA
1 AATAATAAT-A
42236950 AATAATAATA
1 AATAATAATA
* *
42236960 AA-ACTAAGA
1 AATAATAATA
*
42236969 AAT-ATAGGAAA
1 AATAATA--ATA
*
42236980 AATAA-AACA
1 AATAATAATA
42236989 AATAATAATA
1 AATAATAATA
42236999 AAT-ATAAT-
1 AATAATAATA
*
42237007 AACAATAA-A
1 AATAATAATA
*
42237016 TAATAATTA-A
1 -AATAATAATA
42237026 AATAATAATA
1 AATAATAATA
42237036 AATAA
1 AATAA
42237041 AAAGAAACAA
Statistics
Matches: 71, Mismatches: 11, Indels: 19
0.70 0.11 0.19
Matches are distributed among these distances:
8 2 0.03
9 32 0.45
10 22 0.31
11 14 0.20
12 1 0.01
ACGTcount: A:0.70, C:0.04, G:0.03, T:0.24
Consensus pattern (10 bp):
AATAATAATA
Found at i:42237022 original size:25 final size:24
Alignment explanation
Indices: 42236980--42237033 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
42236970 ATATAGGAAA
42236980 AATAAAACAAATAATAA-TAAATAT
1 AATAAAACAAATAATAATTAAA-AT
*
42237004 AATAACAATAAATAATAATTAAAAT
1 AATAA-AACAAATAATAATTAAAAT
42237029 AATAA
1 AATAA
42237034 TAAATAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 18 0.67
26 4 0.15
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (24 bp):
AATAAAACAAATAATAATTAAAAT
Found at i:42240896 original size:23 final size:24
Alignment explanation
Indices: 42240841--42240898 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
42240831 AACAAAAGAC
* * *
42240841 AAATTAAAATGTAAAAATTTAATTA
1 AAATAAAAATATAAAAA-TTAAATA
*
42240866 AAACAAAAATATAAAAA-TAAATA
1 AAATAAAAATATAAAAATTAAATA
42240889 AAATAAAAAT
1 AAATAAAAAT
42240899 GGCTAAATTA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
23 14 0.50
25 14 0.50
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.26
Consensus pattern (24 bp):
AAATAAAAATATAAAAATTAAATA
Found at i:42245144 original size:25 final size:27
Alignment explanation
Indices: 42245116--42245172 Score: 66
Period size: 25 Copynumber: 2.2 Consensus size: 27
42245106 CAACAAAACT
*
42245116 AAAATCT-AACATAAAAA-G-AAAAGAG
1 AAAATCTAAAC-TAAAAATGAAAAAAAG
*
42245141 AAAACCTAAACTAAAAATGAAAAAAAG
1 AAAATCTAAACTAAAAATGAAAAAAAG
42245168 AAAAT
1 AAAAT
42245173 GAAAGGAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
25 12 0.46
26 4 0.15
27 10 0.38
ACGTcount: A:0.70, C:0.09, G:0.09, T:0.12
Consensus pattern (27 bp):
AAAATCTAAACTAAAAATGAAAAAAAG
Found at i:42246147 original size:28 final size:29
Alignment explanation
Indices: 42246116--42246174 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
42246106 AAAGTGATTT
*
42246116 TTGACAAAAATGTCAATT-A-GGGATTAAA
1 TTGACAAAAATGTAAATTGAGGGGA-TAAA
* *
42246144 TTGAGAAAAGTGTAAATTGAGGGGATAAA
1 TTGACAAAAATGTAAATTGAGGGGATAAA
42246173 TT
1 TT
42246175 TTAAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 15 0.58
29 7 0.27
30 4 0.15
ACGTcount: A:0.44, C:0.03, G:0.24, T:0.29
Consensus pattern (29 bp):
TTGACAAAAATGTAAATTGAGGGGATAAA
Found at i:42246716 original size:43 final size:44
Alignment explanation
Indices: 42246668--42246816 Score: 171
Period size: 43 Copynumber: 3.5 Consensus size: 44
42246658 CATGATGAGA
* *
42246668 TTACATGTAAGACCATGTCTAGGACATTGGCATTG-TAT-TGTGT
1 TTACATGTAAGACCATATCTAGGACATTGGCATCGATATATGT-T
* * * *
42246711 TTACATGTAAGACCATGTCTAGGACATTAGCATCGTTATATGAT
1 TTACATGTAAGACCATATCTAGGACATTGGCATCGATATATGTT
* * *
42246755 TT-CGTGTAAGACCATATCTGGGACATTGGCATCGATATAT-TA
1 TTACATGTAAGACCATATCTAGGACATTGGCATCGATATATGTT
*
42246797 TAACATGTAAGACCATATCT
1 TTACATGTAAGACCATATCT
42246817 GGGATATGGC
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
42 1 0.01
43 82 0.90
44 6 0.07
45 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.34
Consensus pattern (44 bp):
TTACATGTAAGACCATATCTAGGACATTGGCATCGATATATGTT
Found at i:42246817 original size:43 final size:42
Alignment explanation
Indices: 42246667--42246833 Score: 167
Period size: 43 Copynumber: 3.9 Consensus size: 42
42246657 TCATGATGAG
* *
42246667 ATTACATGTAAGACCATGTCTAGGACATTGGCATTGTAT-TGT
1 ATTACATGTAAGACCATATCTAGGACATTGGCATCGTATAT-T
* * * *
42246709 GTTTACATGTAAGACCATGTCTAGGACATTAGCATCGTTATATG
1 -ATTACATGTAAGACCATATCTAGGACATTGGCATCG-TATATT
* * *
42246753 ATTTCGTGTAAGACCATATCTGGGACATTGGCATCGATATATT
1 ATTACATGTAAGACCATATCTAGGACATTGGCATCG-TATATT
* * * *
42246796 ATAACATGTAAGACCATATCTGGGATA-TGGCATTGTAT
1 ATTACATGTAAGACCATATCTAGGACATTGGCATCGTAT
42246834 GAGCCCTACG
Statistics
Matches: 105, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
41 3 0.03
42 7 0.07
43 91 0.87
44 3 0.03
45 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (42 bp):
ATTACATGTAAGACCATATCTAGGACATTGGCATCGTATATT
Found at i:42254314 original size:43 final size:43
Alignment explanation
Indices: 42254200--42254347 Score: 129
Period size: 43 Copynumber: 3.4 Consensus size: 43
42254190 TGAGATTACA
* * * * * *
42254200 TGTAAGACCATGTCTGGGACATTGGCATTG-TATTGTGTTTATG
1 TGTAAGACCATATCTGGGACATTAGCATCGATA-TATGATAATG
* * * **
42254243 TGTAAGACCATGTCTAGGACATTGGCATC-ATTATATGATTTTG
1 TGTAAGACCATATCTGGGACATTAGCATCGA-TATATGATAATG
* * **
42254286 TGTAAGACCACATCTGGGACGTTAGCATCGATATATGATAACA
1 TGTAAGACCATATCTGGGACATTAGCATCGATATATGATAATG
42254329 TGTAAGACCATATCTGGGA
1 TGTAAGACCATATCTGGGA
42254348 TATGGCATTG
Statistics
Matches: 87, Mismatches: 15, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
43 84 0.97
44 3 0.03
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACATTAGCATCGATATATGATAATG
Found at i:42255694 original size:46 final size:46
Alignment explanation
Indices: 42255548--42255718 Score: 200
Period size: 46 Copynumber: 3.7 Consensus size: 46
42255538 TTTTTGTGCT
* * * * *
42255548 AGTGTAAGGCATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGACGAGAGCC
* * * * *
42255594 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGTGACGAGAGCC
**
42255642 AGTGTAAGACATGTCTAAGACATGCATCGGCCTCGTGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGACG-AGAGCC
42255688 AGTGTAAGACATGTCTGGGACATGCATCGGC
1 AGTGTAAGACATGTCTGGGACATGCATCGGC
42255719 TACGAGATGT
Statistics
Matches: 103, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 53 0.51
47 27 0.26
48 23 0.22
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGTGACGAGAGCC
Found at i:42255775 original size:46 final size:44
Alignment explanation
Indices: 42255642--42255764 Score: 113
Period size: 46 Copynumber: 2.7 Consensus size: 44
42255632 GACGAGAGCT
** * * * *
42255642 AGTGTAAGACATGTCTAAGACATGCATCGGCCT-CGTGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGAATCGG-CTACGAGATGT--GTC
*
42255688 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGAATCGGCTACGAGATGTGTC
* *
42255732 AGTGTAAGACTCTGTCTGGGACGTGAAATCGGC
1 AGTGTAAGAC-ATGTCTGGGACATG-AATCGGC
42255765 ATGAATATGT
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
44 12 0.18
45 14 0.21
46 40 0.61
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGAATCGGCTACGAGATGTGTC
Found at i:42258090 original size:37 final size:37
Alignment explanation
Indices: 42258031--42258139 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
42258021 AGCTCAGATG
* *
42258031 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
42258068 AAATCTCCACATGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
42258105 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
42258140 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:42258340 original size:48 final size:48
Alignment explanation
Indices: 42258286--42258420 Score: 234
Period size: 48 Copynumber: 2.8 Consensus size: 48
42258276 GCACATCGCC
*
42258286 TACATATTTCACACTAGCCCTTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
42258334 TACATATTTCACACTAGCCATTCGGCTTTACCACATATGCATGTCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
42258382 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATA
42258421 TGCATGTTCA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:42258469 original size:47 final size:47
Alignment explanation
Indices: 42258390--42258677 Score: 432
Period size: 47 Copynumber: 6.1 Consensus size: 47
42258380 CATACATATT
* * * *
42258390 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
42258437 TCACATTGGCCATTTGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
42258484 TCACATTGGCCATTCGGCCTTATCACATACATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
42258531 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
42258578 TCACATTGGCCATTCGGCCTTATCACATACATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
42258625 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
42258672 TCACAT
1 TCACAT
42258678 AAAATCCTAA
Statistics
Matches: 217, Mismatches: 24, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 217 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:42258511 original size:94 final size:94
Alignment explanation
Indices: 42258350--42258677 Score: 473
Period size: 94 Copynumber: 3.5 Consensus size: 94
42258340 TTTCACACTA
* * * *
42258350 GCCATTCGGCTTTA-C-CACATATGCATGTCTCATACATAT-TTCACATTAGCCATTCGGCTTTA
1 GCCATTCGGCCTTATCACACATATGCATG-CTC--ACAT-TCATCACATTGGCCATTCGGCCTTA
* *
42258412 CCACATATATGCATGTTCATATTCATCACATTG
62 TCACATACATGCATGTTCATATTCATCACATTG
*
42258445 GCCATTTGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
42258510 ATACATGCATGTTCATATTCATCACATTG
66 ATACATGCATGTTCATATTCATCACATTG
42258539 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
*
42258604 ATACATGCATGTTCACATTCATCACATTG
66 ATACATGCATGTTCATATTCATCACATTG
* * * ***
42258633 GCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACAT
42258678 AAAATCCTAA
Statistics
Matches: 215, Mismatches: 15, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.00
94 186 0.87
95 12 0.06
96 4 0.02
97 12 0.06
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (94 bp):
GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCAC
ATACATGCATGTTCATATTCATCACATTG
Found at i:42258605 original size:22 final size:22
Alignment explanation
Indices: 42258530--42258605 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
42258520 GTTCATATTC
42258530 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
42258552 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
42258576 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
42258599 ATCACAT
1 ATCACAT
42258606 ACATGCATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.29
23 12 0.29
24 12 0.29
25 5 0.12
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:42264610 original size:19 final size:19
Alignment explanation
Indices: 42264586--42264624 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
42264576 ATACCACTTA
42264586 AATGAATGGAGGCGTGACT
1 AATGAATGGAGGCGTGACT
42264605 AATGAATGGAGGCGTGACT
1 AATGAATGGAGGCGTGACT
42264624 A
1 A
42264625 TCAACCTACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.10, G:0.36, T:0.21
Consensus pattern (19 bp):
AATGAATGGAGGCGTGACT
Found at i:42271355 original size:42 final size:41
Alignment explanation
Indices: 42271267--42271360 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 41
42271257 CCTAATTGGA
* * **
42271267 AAAATAATTCTCTTATTCTAATATACCACTAAAACATGAGGG
1 AAAAT-ATTCTCTTATTCTAATAAACCACTAAAACATAAAAG
* * *
42271309 AAAATAGTTCTCTTATTCTAATAAACTACTAAAAGATAAAAT
1 AAAATA-TTCTCTTATTCTAATAAACCACTAAAACATAAAAG
42271351 AAAATATTCT
1 AAAATATTCT
42271361 TAGAATATGA
Statistics
Matches: 44, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
41 5 0.11
42 39 0.89
ACGTcount: A:0.47, C:0.14, G:0.06, T:0.33
Consensus pattern (41 bp):
AAAATATTCTCTTATTCTAATAAACCACTAAAACATAAAAG
Found at i:42271400 original size:19 final size:18
Alignment explanation
Indices: 42271378--42271417 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
42271368 TGAATAAAAC
*
42271378 TTATCTACCTAAATAAGAT
1 TTATCTAACTAAATAA-AT
42271397 TTATCTAACTAAATAAAT
1 TTATCTAACTAAATAAAT
42271415 TTA
1 TTA
42271418 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTAACTAAATAAAT
Found at i:42273433 original size:42 final size:42
Alignment explanation
Indices: 42273344--42273434 Score: 119
Period size: 42 Copynumber: 2.2 Consensus size: 42
42273334 TACTAATTAG
* * **
42273344 GAAAATAATTTCCTTATTCTAATAAACTACTAAAACATGAGG
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
* *
42273386 GAAAATAGTTCCCTTATTCTAATAAACTACTAAAAGATAAAA
1 GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
*
42273428 TAAAATA
1 GAAAATA
42273435 TGAATAAAAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.49, C:0.13, G:0.08, T:0.30
Consensus pattern (42 bp):
GAAAATAATTCCCTTATTCTAATAAACTACTAAAACATAAAA
Found at i:42273467 original size:19 final size:18
Alignment explanation
Indices: 42273445--42273484 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
42273435 TGAATAAAAC
* *
42273445 TTATCTACCTTAATAAGAT
1 TTATCTAACTAAATAA-AT
42273464 TTATCTAACTAAATAAAT
1 TTATCTAACTAAATAAAT
42273482 TTA
1 TTA
42273485 AAATATATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (18 bp):
TTATCTAACTAAATAAAT
Found at i:42282255 original size:22 final size:22
Alignment explanation
Indices: 42282230--42282274 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
42282220 TTTAATAAAA
42282230 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
42282252 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
42282274 A
1 A
42282275 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:42287508 original size:44 final size:45
Alignment explanation
Indices: 42287441--42287525 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
42287431 TGAACATTAA
*
42287441 ATTTTATTTTTAATGATTTTTAAAGTGCTT-ATAACATTCTATAAT
1 ATTTTATTTATAATGATTTTTAAAGTG-TTCATAACATTCTATAAT
42287486 ATTTTATTTAT-ATGATTTTTAAAGTGTTCATAACATTCTA
1 ATTTTATTTATAATGATTTTTAAAGTGTTCATAACATTCTA
42287526 ATTCATAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
43 2 0.05
44 26 0.68
45 10 0.26
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (45 bp):
ATTTTATTTATAATGATTTTTAAAGTGTTCATAACATTCTATAAT
Found at i:42306896 original size:22 final size:22
Alignment explanation
Indices: 42306838--42306918 Score: 80
Period size: 22 Copynumber: 3.8 Consensus size: 22
42306828 ACGGATTCCA
**
42306838 TCCAAACACACCAAAAT-ATCC
1 TCCAAACACACCAGTATAATCC
*
42306859 AACCAAAACACACCAGTATAATCC
1 -TCC-AAACACACCAGTATAATCC
42306883 TCCAAACACACCAGTATAA---
1 TCCAAACACACCAGTATAATCC
*
42306902 TCAAAACACACCAGTAT
1 TCCAAACACACCAGTAT
42306919 CATATAATCC
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
19 16 0.31
22 18 0.35
23 14 0.27
24 4 0.08
ACGTcount: A:0.48, C:0.33, G:0.04, T:0.15
Consensus pattern (22 bp):
TCCAAACACACCAGTATAATCC
Found at i:42306951 original size:28 final size:29
Alignment explanation
Indices: 42306903--42306976 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 29
42306893 CCAGTATAAT
* *
42306903 CAAAACACACCAGTATCATATAATCC-TC
1 CAAAACACACCAGAATAATATAATCCATC
*
42306931 CCAAACACACCAGAATAATATAATCCATC
1 CAAAACACACCAGAATAATATAATCCATC
42306960 CAAAACACACCAGAATA
1 CAAAACACACCAGAATA
42306977 GCACAAAGTG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
28 23 0.56
29 18 0.44
ACGTcount: A:0.49, C:0.31, G:0.04, T:0.16
Consensus pattern (29 bp):
CAAAACACACCAGAATAATATAATCCATC
Found at i:42318247 original size:37 final size:37
Alignment explanation
Indices: 42318169--42318260 Score: 98
Period size: 37 Copynumber: 2.4 Consensus size: 37
42318159 TTAAATTTAA
*
42318169 TATTAAGATAATTACTTCAATATTAAATTAATAAAATAC
1 TATTAAGATAA-TA-TTAAATATTAAATTAATAAAATAC
* *
42318208 TATTAAGATAACTATTAAAT-TTAATTTAATACTAA-AC
1 TATTAAGATAA-TATTAAATATTAAATTAATA-AAATAC
*
42318245 TATTAAAATAATATTA
1 TATTAAGATAATATTA
42318261 TTTTTGAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
36 5 0.11
37 22 0.47
38 7 0.15
39 13 0.28
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (37 bp):
TATTAAGATAATATTAAATATTAAATTAATAAAATAC
Found at i:42320622 original size:42 final size:43
Alignment explanation
Indices: 42320575--42320662 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 43
42320565 TATAAGTTCT
*
42320575 TGTGCGATACAATTATAGCTTCGGCTAATT-ATTTGAACTAAG
1 TGTGCGATACAATTATAGCTTCGGCTAATTAATTAGAACTAAG
* *
42320617 TGTGCGATACAATTATAGCTTCGGTTAATTAATTAGCACTAAG
1 TGTGCGATACAATTATAGCTTCGGCTAATTAATTAGAACTAAG
42320660 TGT
1 TGT
42320663 ACGAGTTTAT
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 29 0.69
43 13 0.31
ACGTcount: A:0.31, C:0.14, G:0.19, T:0.36
Consensus pattern (43 bp):
TGTGCGATACAATTATAGCTTCGGCTAATTAATTAGAACTAAG
Found at i:42326728 original size:43 final size:43
Alignment explanation
Indices: 42326680--42326780 Score: 157
Period size: 43 Copynumber: 2.3 Consensus size: 43
42326670 GATTTAATCT
* **
42326680 ATTGGCACTAAGTGTGTGATACAATTATAGCTTTGGCTAATTA
1 ATTGGCACTAAGTGTGTGATACAATTACAGCTTCAGCTAATTA
*
42326723 ATTGGCACTAAGTGTGTGATACAATTACAGCTTCAGTTAATTA
1 ATTGGCACTAAGTGTGTGATACAATTACAGCTTCAGCTAATTA
*
42326766 ATTAGCACTAAGTGT
1 ATTGGCACTAAGTGT
42326781 ACGAGTTTAT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.36
Consensus pattern (43 bp):
ATTGGCACTAAGTGTGTGATACAATTACAGCTTCAGCTAATTA
Found at i:42338328 original size:7 final size:7
Alignment explanation
Indices: 42338311--42338347 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
42338301 ATGGGGGTAA
42338311 GATTT-T
1 GATTTCT
42338317 GATTTCT
1 GATTTCT
42338324 GATTTCT
1 GATTTCT
42338331 GATTTCT
1 GATTTCT
42338338 GATTT-T
1 GATTTCT
42338344 GATT
1 GATT
42338348 AACACATCTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
6 10 0.33
7 20 0.67
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.59
Consensus pattern (7 bp):
GATTTCT
Found at i:42344403 original size:16 final size:15
Alignment explanation
Indices: 42344382--42344412 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
42344372 AGACTGTTTA
42344382 TCTGTATTTGTATATT
1 TCTGTATTTG-ATATT
42344398 TCTGTATTTGATATT
1 TCTGTATTTGATATT
42344413 GGGGATGGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (15 bp):
TCTGTATTTGATATT
Found at i:42344629 original size:6 final size:7
Alignment explanation
Indices: 42344603--42344631 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
42344593 TGGGGTAGGA
42344603 TTCTGAT
1 TTCTGAT
42344610 TTCTGAT
1 TTCTGAT
42344617 TTCTGAT
1 TTCTGAT
42344624 TT-TGAT
1 TTCTGAT
42344630 TT
1 TT
42344632 GCACATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.14, C:0.10, G:0.14, T:0.62
Consensus pattern (7 bp):
TTCTGAT
Found at i:42350813 original size:10 final size:10
Alignment explanation
Indices: 42350798--42350829 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
42350788 TAAATACATT
42350798 TAATTAAAGA
1 TAATTAAAGA
42350808 TAATTAAAGA
1 TAATTAAAGA
42350818 TAATTAAA-A
1 TAATTAAAGA
42350827 TAA
1 TAA
42350830 AATCTTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (10 bp):
TAATTAAAGA
Found at i:42350855 original size:27 final size:27
Alignment explanation
Indices: 42350825--42350887 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
42350815 AGATAATTAA
42350825 AATA-AAATCTTAAAATTAAATAATCCT
1 AATATAAATCTTAAAATT-AATAATCCT
** * *
42350852 AATATTTATCTTAATATTAATTATCCT
1 AATATAAATCTTAAAATTAATAATCCT
42350879 AATATAAAT
1 AATATAAAT
42350888 AAAATAAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
27 19 0.66
28 10 0.34
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (27 bp):
AATATAAATCTTAAAATTAATAATCCT
Found at i:42350870 original size:28 final size:27
Alignment explanation
Indices: 42350831--42350883 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
42350821 TTAAAATAAA
42350831 ATCTTAAAATTAAATAATCCTAATATTT
1 ATCTTAAAATT-AATAATCCTAATATTT
* *
42350859 ATCTTAATATTAATTATCCTAATAT
1 ATCTTAAAATTAATAATCCTAATAT
42350884 AAATAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.45
Consensus pattern (27 bp):
ATCTTAAAATTAATAATCCTAATATTT
Found at i:42357802 original size:44 final size:44
Alignment explanation
Indices: 42357735--42357823 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
42357725 AGCATTAACC
42357735 AACTTAGCTCATTTAATTCGATCCTCTTAGGATGCAAGATACTT
1 AACTTAGCTCATTTAATTCGATCCTCTTAGGATGCAAGATACTT
* * * *
42357779 AACTTAGCTCATTTAGTTTGATCCTCTTAGGATGGAAGATCCTT
1 AACTTAGCTCATTTAATTCGATCCTCTTAGGATGCAAGATACTT
42357823 A
1 A
42357824 GTATCCCTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (44 bp):
AACTTAGCTCATTTAATTCGATCCTCTTAGGATGCAAGATACTT
Found at i:42361671 original size:47 final size:47
Alignment explanation
Indices: 42361617--42361712 Score: 192
Period size: 47 Copynumber: 2.0 Consensus size: 47
42361607 TACCACGAGG
42361617 ATTCCGTTCCTGTGTCCTTCCATGATCATTATCAGCATTCCGATCTT
1 ATTCCGTTCCTGTGTCCTTCCATGATCATTATCAGCATTCCGATCTT
42361664 ATTCCGTTCCTGTGTCCTTCCATGATCATTATCAGCATTCCGATCTT
1 ATTCCGTTCCTGTGTCCTTCCATGATCATTATCAGCATTCCGATCTT
42361711 AT
1 AT
42361713 CTCCCACGAA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 49 1.00
ACGTcount: A:0.18, C:0.29, G:0.12, T:0.41
Consensus pattern (47 bp):
ATTCCGTTCCTGTGTCCTTCCATGATCATTATCAGCATTCCGATCTT
Found at i:42367530 original size:55 final size:56
Alignment explanation
Indices: 42367465--42367579 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
42367455 AGCATGGCTG
* * *
42367465 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
42367521 CCAGA-ACAGATATACGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
42367576 CCAG
1 CCAG
42367580 GACGCTTCCC
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.57
56 21 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (56 bp):
CCAGATACAGATAAACGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:42367576 original size:28 final size:27
Alignment explanation
Indices: 42367490--42367579 Score: 101
Period size: 27 Copynumber: 3.2 Consensus size: 27
42367480 GTGACAGAGT
*
42367490 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
42367519 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
42367546 CACCAGAACAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
42367574 CACCAG
1 CACCAG
42367580 GACGCTTCCC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
27 23 0.44
28 22 0.42
29 7 0.13
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.19
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:42375422 original size:28 final size:27
Alignment explanation
Indices: 42375336--42375425 Score: 92
Period size: 27 Copynumber: 3.2 Consensus size: 27
42375326 GTGACAGAGT
*
42375336 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCA-TGC
** *
42375365 CACCAGAACAGAT-ATACGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCA-TGC
*
42375392 CACCAGAATAGATAATTTGTGGCATAGC
1 CACCAGAACAGATAATTTGTGGCAT-GC
42375420 CACCAG
1 CACCAG
42375426 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
27 22 0.43
28 22 0.43
29 7 0.14
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATAATTTGTGGCATGC
Found at i:42389187 original size:50 final size:50
Alignment explanation
Indices: 42389120--42389220 Score: 184
Period size: 50 Copynumber: 2.0 Consensus size: 50
42389110 AGGAATAAGA
*
42389120 AAATTTCATTGGTGAAAGTCTTATGGCATCGACACGGGGTTGAAGAAGCT
1 AAATTTCATTGGTGAAAGTCTTATGGCATCGACACGGGGTCGAAGAAGCT
*
42389170 AAATTTTATTGGTGAAAGTCTTATGGCATCGACACGGGGTCGAAGAAGCT
1 AAATTTCATTGGTGAAAGTCTTATGGCATCGACACGGGGTCGAAGAAGCT
42389220 A
1 A
42389221 CGTGGGAACC
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (50 bp):
AAATTTCATTGGTGAAAGTCTTATGGCATCGACACGGGGTCGAAGAAGCT
Found at i:42390516 original size:43 final size:43
Alignment explanation
Indices: 42390438--42390539 Score: 104
Period size: 43 Copynumber: 2.4 Consensus size: 43
42390428 ATTGAGATGT
* * * *
42390438 GATTACATGTAAGACCCTGTGTGAGACAGTGGCATTG-TATTAC
1 GATTACGTGTAAGACCATGTGTGAGACAGTAGCATTGTTAAT-C
42390481 GATTACGTGTAAGACCATGTGTG-GAACA-TCAGCATTGTTAATC
1 GATTACGTGTAAGACCATGTGTGAG-ACAGT-AGCATTGTTAATC
42390524 GACTT-CGTGTAAGACC
1 GA-TTACGTGTAAGACC
42390540 CTATATGGGA
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.04
43 44 0.86
44 5 0.10
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTGTGAGACAGTAGCATTGTTAATC
Found at i:42400145 original size:13 final size:13
Alignment explanation
Indices: 42400129--42400168 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
42400119 AAAAAGAAAG
42400129 AGAAAGAAAGGGA
1 AGAAAGAAAGGGA
*
42400142 AGAAAG-GAGGGA
1 AGAAAGAAAGGGA
42400154 GAGAAAGAAAGGGA
1 -AGAAAGAAAGGGA
42400168 A
1 A
42400169 AGGGAGAGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 5 0.22
13 13 0.57
14 5 0.22
ACGTcount: A:0.57, C:0.00, G:0.42, T:0.00
Consensus pattern (13 bp):
AGAAAGAAAGGGA
Found at i:42406221 original size:29 final size:30
Alignment explanation
Indices: 42406179--42406266 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 30
42406169 TTTGAATCAC
* * *
42406179 AATTAGAATTTCATGTTTATAATTGCACCA
1 AATTAGAAATTCATGTATACAATTGCACCA
*
42406209 AATTA-AAATTCATGTATACAATTGCACATTA
1 AATTAGAAATTCATGTATACAATTGCAC--CA
* *
42406240 AATCA-AAGTTCATGTATACAATTGCAC
1 AATTAGAAATTCATGTATACAATTGCAC
42406267 ATTAAATTAA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.38
30 5 0.10
31 26 0.52
ACGTcount: A:0.41, C:0.15, G:0.09, T:0.35
Consensus pattern (30 bp):
AATTAGAAATTCATGTATACAATTGCACCA
Found at i:42406255 original size:31 final size:31
Alignment explanation
Indices: 42406208--42406288 Score: 135
Period size: 31 Copynumber: 2.6 Consensus size: 31
42406198 TAATTGCACC
*
42406208 AAATTAAAATTCATGTATACAATTGCACATT
1 AAATTAAAGTTCATGTATACAATTGCACATT
*
42406239 AAATCAAAGTTCATGTATACAATTGCACATT
1 AAATTAAAGTTCATGTATACAATTGCACATT
*
42406270 AAATTAAAGTTCATATATA
1 AAATTAAAGTTCATGTATA
42406289 ATTTTGAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (31 bp):
AAATTAAAGTTCATGTATACAATTGCACATT
Found at i:42406376 original size:50 final size:50
Alignment explanation
Indices: 42406315--42406417 Score: 188
Period size: 50 Copynumber: 2.1 Consensus size: 50
42406305 CTTAAAATTA
*
42406315 ATATAATATTTTTTAAAATTAATTTTCAAGTCAGACAATTTGCCCAATGG
1 ATATAATATTTTTTAAAATTAATTTTCAAGTCAGACAATTGGCCCAATGG
*
42406365 ATATGATATTTTTTAAAATTAATTTTCAAGTCAGACAATTGGCCCAATGG
1 ATATAATATTTTTTAAAATTAATTTTCAAGTCAGACAATTGGCCCAATGG
42406415 ATA
1 ATA
42406418 ATTGAACTTA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.39
Consensus pattern (50 bp):
ATATAATATTTTTTAAAATTAATTTTCAAGTCAGACAATTGGCCCAATGG
Found at i:42406820 original size:17 final size:16
Alignment explanation
Indices: 42406800--42406856 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
42406790 ATTTTAATAG
42406800 ATTTAATATTTAGTTTA
1 ATTTAATATTTA-TTTA
*
42406817 ATTTAATACTTATCTTA
1 ATTTAATATTTAT-TTA
*
42406834 ATAT-AT-TTTA-TTA
1 ATTTAATATTTATTTA
42406847 ATTTAATATT
1 ATTTAATATT
42406857 AAAGTGATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
13 6 0.18
14 2 0.06
15 5 0.15
16 3 0.09
17 17 0.52
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.58
Consensus pattern (16 bp):
ATTTAATATTTATTTA
Found at i:42406872 original size:20 final size:20
Alignment explanation
Indices: 42406849--42406904 Score: 73
Period size: 17 Copynumber: 3.0 Consensus size: 20
42406839 TTTTATTAAT
42406849 TTAATATTAAAGTGATTACC
1 TTAATATTAAAGTGATTACC
**
42406869 TTAATATTAAA-T--TTAAT
1 TTAATATTAAAGTGATTACC
42406886 TTAATATTAAAGTGATTAC
1 TTAATATTAAAGTGATTAC
42406905 GTTTAATCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
17 14 0.47
18 1 0.03
19 1 0.03
20 14 0.47
ACGTcount: A:0.43, C:0.05, G:0.07, T:0.45
Consensus pattern (20 bp):
TTAATATTAAAGTGATTACC
Found at i:42406891 original size:17 final size:19
Alignment explanation
Indices: 42406842--42406903 Score: 74
Period size: 20 Copynumber: 3.3 Consensus size: 19
42406832 TAATATATTT
42406842 TATTAATTTAATATTAAAG
1 TATTAATTTAATATTAAAG
**
42406861 TGATTACCTTAATATTAAA-
1 T-ATTAATTTAATATTAAAG
42406880 T-TTAATTTAATATTAAAG
1 TATTAATTTAATATTAAAG
42406898 TGATTA
1 T-ATTA
42406904 CGTTTAATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
17 14 0.40
18 1 0.03
19 2 0.06
20 18 0.51
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (19 bp):
TATTAATTTAATATTAAAG
Found at i:42413862 original size:28 final size:28
Alignment explanation
Indices: 42413822--42413885 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
42413812 CATATATTAT
*
42413822 ATATATATGCATGACTTTATCTTATATA
1 ATATATATGCATGACTTTATCTTACATA
* *
42413850 ATATATATGCATGGCTTTATTTTACATA
1 ATATATATGCATGACTTTATCTTACATA
*
42413878 GTATATAT
1 ATATATAT
42413886 TAATGGATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.09, G:0.09, T:0.47
Consensus pattern (28 bp):
ATATATATGCATGACTTTATCTTACATA
Found at i:42414283 original size:36 final size:35
Alignment explanation
Indices: 42414196--42414306 Score: 100
Period size: 36 Copynumber: 3.1 Consensus size: 35
42414186 AGCCAATTAT
* **
42414196 ATTT-GTGTATTGTATTATATTGTGAACCATGTTA
1 ATTTGGTGAATTGTATTATATTGTGAACTGTGTTA
* *
42414230 ACTTGGTGAATTATATTATTATTGTGAACTGTGTTA
1 ATTTGGTGAATTGTATTA-TATTGTGAACTGTGTTA
* * **
42414266 ATTTGGT-ACTCTGTATTAATATGGTGAACTGCATTA
1 ATTTGGTGAAT-TGTATT-ATATTGTGAACTGTGTTA
42414302 ATTTG
1 ATTTG
42414307 TCAAATTGTG
Statistics
Matches: 62, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
34 3 0.05
35 13 0.21
36 45 0.73
37 1 0.02
ACGTcount: A:0.27, C:0.07, G:0.19, T:0.47
Consensus pattern (35 bp):
ATTTGGTGAATTGTATTATATTGTGAACTGTGTTA
Found at i:42415053 original size:12 final size:13
Alignment explanation
Indices: 42415017--42415054 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
42415007 AAATATTTGA
42415017 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
42415030 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
42415044 CTTG-TCTTAAT
1 CTTGTTCTTAAT
42415055 ATTCCAGGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:42415148 original size:23 final size:23
Alignment explanation
Indices: 42415122--42415167 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
42415112 CTAAGAGTAA
42415122 ATTTGTCATAATTAAGCGAAGTT
1 ATTTGTCATAATTAAGCGAAGTT
42415145 ATTTGTCATAATTAAGCGAAGTT
1 ATTTGTCATAATTAAGCGAAGTT
42415168 GATTGCACGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (23 bp):
ATTTGTCATAATTAAGCGAAGTT
Found at i:42420093 original size:4 final size:4
Alignment explanation
Indices: 42420084--42422352 Score: 2838
Period size: 4 Copynumber: 570.2 Consensus size: 4
42420074 AATAATAATA
*
42420084 ACAT ACAT ACAT ACAT ACAT ACAT GCAT ACAT ACA- AGCAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A-CAT ACAT ACAT
* * * *
42420132 ACAT ACAT ACAT ACAT GCAT ACAT ACAT GCAT ACAT ACAT GCAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42420180 ACAT GCAT ACAT ACAT GCAT ACAT GA-AT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT -ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42420228 GCAT ACAT ACAT ACAT ACAT GCAT ACAT GCAT ACAT ACAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * *
42420276 ACAT GCAT ACAT ACAT GCAT ACAT GCAT ACAT ACAT GCAT ACTT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42420324 ACAT ACAT ACCT ACAT ACAT ACAT ACAT ACAT ACAT A-A- AAAT A-AT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
42420369 A-AT A-AT AACTT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42420416 ACAT ACAT ACAT ACAT GCAT GCAT ACAT ACAT ACAT GCAT TCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
42420464 GCAT ACAT ACAT ACAT GCAT ACAT ACAT CCAT GCAT ACAT ACAT CCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42420512 ACAT ACAT ACAT ACAT ATAT ACAT ACAT CCAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42420560 ACAT ACAT ACAT ACAT ACAT ACAT CCAT CCAT ACAT CCAT CCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
42420608 CCAT CCAT ACAT ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
42420656 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42420704 ACAT ACAT ACAT ACAT CCAT ACAT ACAT ACAT ACAT ACAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
42420752 ACAT ACAT CCAT GCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* ** * * * *
42420800 ACAT ACAT CCAT GTAT ACAT ACAT CCAT GCAT ACAT ACAT CCAT CCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42420848 ACAT ACAT ACAT CCAT ACAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42420896 ACAA ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * * *
42420944 GCAT ACAT CCAT ACAT GCAT GCAT ACAT CCAT ACAT GCAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42420992 CCAT ACAT GCAT GCAT ACAT ACAT ACAT A-A- AAAT A-AT A-AT A-AT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
42421035 AACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT GCAT
1 -ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
42421084 ACAT ACAT GCAT ACAT ACAT ACAT ACAT ACAT AAAT GCAT CCAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42421132 ACAT ACAT CCAT GCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42421180 ACAT ACAT CCAT ACAT AAAT ACAT GCAT ACAT ACAT -CTAT GCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACAT ACAT
* *
42421228 ACAT CCAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT CCAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
42421276 ACAT ACAT ACAT ACAT ACAT -CTAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT AC-AT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42421324 ACAT ACAT ACAT ACAT CCAT GCAT ACAT ACAT CCAT GCAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42421372 CCAT GCAT ACAT ACAT CCAT GCAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
*
42421420 ACAT ACAT ACAT ACAT ACAT ACAT ACAT -CAAT ACAT ACAT ACAT ATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACAT ACAT ACAT ACAT
* * * *
42421468 CCAT CCAT ACAT ACAT GCAT ACAT ACAT ACAT ACAT ACAC ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42421516 ACAT ACAT ACAT -CTAT GCAT ACAT ACAT ACAT ACAT ACAT GCAT ACAT
1 ACAT ACAT ACAT AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * *
42421564 ACAT CCAT GCAT ACAT ACAT CCAT GCAT ACAT ACAT CCAT CCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * *
42421612 ACAT ACAT ATAT ACAT ACAT ACAT ACAA ACAT AGAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * * *
42421660 ACAT GCAT GCAT ACAT CCAT ACAT GCAT GCAT ACAT CCAT ACAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42421708 GCAT ACAT ACAT ACAT A-A- AAAT A-AT A-AT A-AT AACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT -ACAT ACAT ACAT
* ** *
42421752 ACAT ACAT ACAT ACAT GCAT ACAT ACAT GTAT ACAT ACAT ATAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
42421800 ACAT ACAT ACAT GCAT ACAT ACAT CCAT GCAT ACAT ACAT CCAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* *
42421848 ATAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT CCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42421896 ACAT AAAT ACAT GCAT ACAT ACAT -CTAT GCAT ACAT ACAT CCAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT AC-AT ACAT ACAT ACAT ACAT ACAT
* *
42421944 ACAT ACAT ACAT ACAT ACAT ACAT CCAT CCAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
42421992 ACAT ACAT ACAT ACAT -CTAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT AC-AT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * *
42422040 ACAT ACAT CCAT GCAT ACAT ACAT CCAT GCAT ACAT ACAT CCAT GCAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42422088 ACAT ACTT CCAT GCAT ACAT ACAT ATAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * *
42422136 ACAT ATAT CCAT CCAT ACAT ACAT GCAT ACAT ACAT ACAT ACAC ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42422184 ACAT ACAT ACAT ACAT CCAT GCAT ACAT ACAT TCAT GCAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * *
42422232 ACAT CCAT ACAT ATAT ACAT ACAT ACAT CCAT ACAT CCAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
* * * * * * *
42422280 ACAT ACAT CCAT GCAT ACAG ATAT CCAT GCAT ACAT ACAT ACAT ATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
42422328 ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT A
42422353 ACAATTTTTG
Statistics
Matches: 1984, Mismatches: 253, Indels: 56
0.87 0.11 0.02
Matches are distributed among these distances:
2 3 0.00
3 38 0.02
4 1930 0.97
5 13 0.01
ACGTcount: A:0.45, C:0.26, G:0.03, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:42428892 original size:17 final size:19
Alignment explanation
Indices: 42428858--42428896 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
42428848 AATATTTATT
42428858 TAATATTTTACCTAAAATAA
1 TAATATTTTA-CTAAAATAA
42428878 TAATATTTTA-T-AAATAA
1 TAATATTTTACTAAAATAA
42428895 TA
1 TA
42428897 TTATAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 8 0.42
18 1 0.05
20 10 0.53
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (19 bp):
TAATATTTTACTAAAATAA
Found at i:42429946 original size:18 final size:17
Alignment explanation
Indices: 42429919--42429952 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
42429909 TTTTTCAAAA
42429919 ATTTATTTTAATTTTTC
1 ATTTATTTTAATTTTTC
42429936 ATTTCATTTTAATTTTT
1 ATTT-ATTTTAATTTTT
42429953 TTAACCCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (17 bp):
ATTTATTTTAATTTTTC
Found at i:42431575 original size:21 final size:21
Alignment explanation
Indices: 42431549--42431604 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
42431539 AACAGTGGTG
* *
42431549 GCGGTGAAATTAGTTACTGTA
1 GCGGTGAAATTAGATACTATA
*
42431570 GCGGTGAGATTAGATACTATA
1 GCGGTGAAATTAGATACTATA
* *
42431591 GCGATGATATTAGA
1 GCGGTGAAATTAGA
42431605 AACAATAATG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (21 bp):
GCGGTGAAATTAGATACTATA
Found at i:42431864 original size:35 final size:35
Alignment explanation
Indices: 42431798--42431873 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 35
42431788 AATAAAATTT
*
42431798 AAATATTTTTAAATTATATTCATAATAAAAT-ATCA
1 AAATATTTTCAAATTATATTCATAATAAAATAAT-A
* *
42431833 AAATATTTTACAAATTATATTTA-AATCAAATAATA
1 AAATATTTT-CAAATTATATTCATAATAAAATAATA
42431868 AAATAT
1 AAATAT
42431874 AAATTAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
35 23 0.64
36 13 0.36
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (35 bp):
AAATATTTTCAAATTATATTCATAATAAAATAATA
Found at i:42431941 original size:17 final size:18
Alignment explanation
Indices: 42431906--42431944 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
42431896 AATTTATAAA
*
42431906 TAAAAATTATATATTTAT
1 TAAAAATTATATATATAT
42431924 TAAAAATTATAT-TATAT
1 TAAAAATTATATATATAT
42431941 TAAA
1 TAAA
42431945 TAATGACATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TAAAAATTATATATATAT
Found at i:42440724 original size:18 final size:18
Alignment explanation
Indices: 42440703--42440749 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
42440693 TATATTAGAT
*
42440703 ATAAAAATGTGATTTTTA
1 ATAAAAATGTGATTTTAA
42440721 ATAAAAAT-T-ATTTTAA
1 ATAAAAATGTGATTTTAA
*
42440737 AAATAAAATGTGA
1 ATA-AAAATGTGA
42440750 AACCGATACT
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
16 8 0.33
17 6 0.25
18 9 0.38
19 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (18 bp):
ATAAAAATGTGATTTTAA
Found at i:42442523 original size:20 final size:20
Alignment explanation
Indices: 42442498--42442541 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
42442488 TTCTCATCAG
42442498 GTTAGTAAATATATTTGGTA
1 GTTAGTAAATATATTTGGTA
42442518 GTTAGTAAATATATTTGGTA
1 GTTAGTAAATATATTTGGTA
42442538 GTTA
1 GTTA
42442542 ACATGGAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.45
Consensus pattern (20 bp):
GTTAGTAAATATATTTGGTA
Found at i:42446112 original size:25 final size:26
Alignment explanation
Indices: 42446076--42446124 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
42446066 AATACTTATC
42446076 TTAATAGTATTATATTAAT-TTAATA
1 TTAATAGTATTATATTAATATTAATA
*
42446101 TTAA-AGTGATTATCTTAATATTAA
1 TTAATAGT-ATTATATTAATATTAA
42446125 ATTTAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.67
26 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (26 bp):
TTAATAGTATTATATTAATATTAATA
Found at i:42446120 original size:68 final size:66
Alignment explanation
Indices: 42446045--42446243 Score: 232
Period size: 68 Copynumber: 3.0 Consensus size: 66
42446035 ATTTTAATAG
*
42446045 ATTTAATATTAAATTTAATTTAATACTTATCTTAATAGTATTATATTAATTTAATATTAAAGTGA
1 ATTTAATATTAAATTTAATTTAATATTTATCTT-ATAGTATTATATTAATTTAATATTAAAGTGA
42446110 TT
65 TT
* * *
42446112 ATCTTAATATTAAATTTAATTTAATATTTATCTTGTAG-ATAAATATT-CTATTAAT-TTAACA-
1 AT-TTAATATTAAATTTAATTTAATATTTATCTTATAGTAT-TATATTAAT-TTAATATTAA-AG
*
42446173 --A-A
62 TGATT
*
42446175 ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAATTTAATATTAAAGTG
1 ATTTAATATTAAATTTAATTTAATATTTATCTT-AT-AGTATTATATTAATTTAATATTAAAGTG
42446240 ATT
64 ATT
42446243 A
1 A
42446244 AGTTTAGTCA
Statistics
Matches: 109, Mismatches: 10, Indels: 25
0.76 0.07 0.17
Matches are distributed among these distances:
62 30 0.28
63 3 0.03
64 14 0.13
65 7 0.06
66 7 0.06
67 17 0.16
68 31 0.28
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (66 bp):
ATTTAATATTAAATTTAATTTAATATTTATCTTATAGTATTATATTAATTTAATATTAAAGTGAT
T
Found at i:42446186 original size:62 final size:59
Alignment explanation
Indices: 42446115--42446229 Score: 176
Period size: 62 Copynumber: 1.9 Consensus size: 59
42446105 AGTGATTATC
* *
42446115 TTAATATTAAATTTAATTTAATATTTATCTTGTAGATAAATATTCTATTAATTTAACAAAAT
1 TTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAACAAAAT
*
42446177 TTAATATTAAATTTAATCTAATATTTATCTTGATAAGTATTATATTAATTTAA
1 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAA
42446230 TATTAAAGTG
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
59 20 0.40
60 1 0.02
61 1 0.02
62 28 0.56
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.50
Consensus pattern (59 bp):
TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAACAAAAT
Found at i:42447577 original size:40 final size:40
Alignment explanation
Indices: 42447533--42447719 Score: 275
Period size: 40 Copynumber: 4.7 Consensus size: 40
42447523 CCAACCCAAT
* * **
42447533 TGCCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACAAA
* *
42447573 TGCCTTCGGGACTTAACCCGGAAATAGCGACCAGCACAAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACAAA
* *
42447613 TGCCTTCGGGGCTTAACCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACAAA
* *
42447653 TGCCTTCGGGACTTATCCCGGAAATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACAAA
*
42447693 TGCCTTCGGGACTTAACCCGGATATAA
1 TGCCTTCGGGACTTAACCCGGAAATAA
42447720 TCCTCAACTG
Statistics
Matches: 133, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 133 1.00
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGAAATAACAACCAGCACAAA
Found at i:42455598 original size:40 final size:40
Alignment explanation
Indices: 42455550--42455774 Score: 297
Period size: 40 Copynumber: 5.6 Consensus size: 40
42455540 AACCCAATTA
* * ** *
42455550 CCTTCGGGATTTAGCCCGGATGTAACAACCAGCACAAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * *
42455590 CCTGCGGGACTTAACCCGGAAATAGCGACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
42455630 CCTTCGGGGCTTAACCCGGAAATAACAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * *
42455670 CCTTCGGGACTTAACCCGAAAAAAACAACCAGCATGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
* * * *
42455710 CCTTCGAGACTTCACCCAGAAATAGCAACCAGCACGAATG
1 CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
*
42455750 CCTTCGGGACTTAACCCGGATATAA
1 CCTTCGGGACTTAACCCGGAAATAA
42455775 TCCTCAATTG
Statistics
Matches: 157, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 157 1.00
ACGTcount: A:0.33, C:0.29, G:0.21, T:0.16
Consensus pattern (40 bp):
CCTTCGGGACTTAACCCGGAAATAACAACCAGCACGAATG
Found at i:42460308 original size:25 final size:26
Alignment explanation
Indices: 42460280--42460328 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
42460270 CGCTCAAATT
42460280 ATTTCTAG-TATTAATTTT-TATTTTA
1 ATTT-TAGCTATTAATTTTATATTTTA
*
42460305 ATTTTAGCTATTTATTTTATATTT
1 ATTTTAGCTATTAATTTTATATTT
42460329 AGATTTAATC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 13 0.62
26 5 0.24
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.65
Consensus pattern (26 bp):
ATTTTAGCTATTAATTTTATATTTTA
Found at i:42471075 original size:47 final size:47
Alignment explanation
Indices: 42471021--42471196 Score: 209
Period size: 47 Copynumber: 3.8 Consensus size: 47
42471011 GGTAGAATGC
42471021 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGT
* * ** * *
42471068 CGATGCCATGTCCCAAACATGGTCTTACAAT--AACACATCTCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCA-AGT
* *
42471114 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAA-GT
*
42471160 CGATGCCATGTCCCAGACATGGTATTACACTGGCTCA
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCA
42471197 CAATAACCTA
Statistics
Matches: 106, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
44 9 0.08
45 22 0.21
46 19 0.18
47 43 0.41
48 13 0.12
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGT
Found at i:42471188 original size:92 final size:93
Alignment explanation
Indices: 42471019--42471188 Score: 265
Period size: 92 Copynumber: 1.8 Consensus size: 93
42471009 GGGGTAGAAT
*
42471019 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAA
*
42471084 ACATGGTCTTACAATAACACATCTCATA
66 ACATGGTATTACAATAACACATCTCATA
*
42471112 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC-TCGTCTCAATGTCGATGCCATGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCAT-ATCTCAA-GTCGATGCCATGTCCC
*
42471174 AGACATGGTATTACA
64 AAACATGGTATTACA
42471189 CTGGCTCACA
Statistics
Matches: 71, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
90 1 0.01
91 20 0.28
92 43 0.61
93 7 0.10
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (93 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCATATCTCAAGTCGATGCCATGTCCCAA
ACATGGTATTACAATAACACATCTCATA
Found at i:42473521 original size:33 final size:32
Alignment explanation
Indices: 42473484--42473581 Score: 97
Period size: 33 Copynumber: 3.0 Consensus size: 32
42473474 TACCCAAATG
*
42473484 GTACAATTTGAAAAGGTTATGTACACTTTGTGT
1 GTAC-ATTTGAAAAGGTTATGTATACTTTGTGT
* ** *
42473517 GTACACTTGAAAATATTAGGTATACTTTGTGT
1 GTACATTTGAAAAGGTTATGTATACTTTGTGT
* * **
42473549 ATACCATATGAAAAGGAAATGTATACTTTGTGT
1 GTA-CATTTGAAAAGGTTATGTATACTTTGTGT
42473582 ATACCACTCA
Statistics
Matches: 51, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
32 25 0.49
33 26 0.51
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (32 bp):
GTACATTTGAAAAGGTTATGTATACTTTGTGT
Found at i:42479776 original size:26 final size:26
Alignment explanation
Indices: 42479741--42479805 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
42479731 TTATAGAACC
42479741 TAAAATTAAAATAATA-TTAAAGGAAAA
1 TAAAA-TAAAATAATACTTAAA-GAAAA
*
42479768 TAAAATAAAA-AGTACTTAAAGAAAA
1 TAAAATAAAATAATACTTAAAGAAAA
42479793 T-AAATAAAGATAA
1 TAAAATAAA-ATAA
42479806 AAGTGAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
24 7 0.21
25 10 0.30
26 11 0.33
27 5 0.15
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.23
Consensus pattern (26 bp):
TAAAATAAAATAATACTTAAAGAAAA
Found at i:42484729 original size:32 final size:32
Alignment explanation
Indices: 42484690--42484765 Score: 134
Period size: 32 Copynumber: 2.4 Consensus size: 32
42484680 ATGGTACAAT
*
42484690 TTGAAAAGGTTATGTACACTTTGTGTGTATAC
1 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
42484722 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
1 TTGAAAAGGTTATGTACACTTTGTGTGTACAC
*
42484754 TTGGAAAGGTTA
1 TTGAAAAGGTTA
42484766 GGTATTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.38
Consensus pattern (32 bp):
TTGAAAAGGTTATGTACACTTTGTGTGTACAC
Found at i:42491571 original size:22 final size:21
Alignment explanation
Indices: 42491531--42491571 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
42491521 CACTAGACAC
*
42491531 AGGGGCACACGCTCATGTGGG
1 AGGGGCACACGCCCATGTGGG
*
42491552 AGGGGCAACACGCCCGTGTG
1 AGGGGC-ACACGCCCATGTG
42491572 ACCAATTCGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.20, C:0.27, G:0.41, T:0.12
Consensus pattern (21 bp):
AGGGGCACACGCCCATGTGGG
Found at i:42492783 original size:47 final size:47
Alignment explanation
Indices: 42492709--42492888 Score: 165
Period size: 47 Copynumber: 3.9 Consensus size: 47
42492699 GGGGTAGAAT
* * *
42492709 GTCGATTCCATGTCTCAGACATGGTCTTTCACTGGCTCATATCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
* * * *
42492756 GTCGATGCCATGTCCCAGACATAGTCTTACACT-G-ACACATCTCGTA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AA
* * * * *
42492802 GCCGATG-CATATCCCAAACAT-GTCTTACACTAGCTC-TCGTCTCAA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAA
*
42492847 -TGCTGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATA
1 GT-C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATA
42492889 ACAACCCATA
Statistics
Matches: 104, Mismatches: 20, Indels: 17
0.74 0.14 0.12
Matches are distributed among these distances:
44 10 0.10
45 22 0.21
46 17 0.16
47 40 0.38
48 14 0.13
49 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (47 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAA
Found at i:42495890 original size:79 final size:81
Alignment explanation
Indices: 42495754--42495938 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
42495744 TTGAATGATG
*
42495754 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
42495818 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
42495833 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
42495895 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
42495913 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
42495939 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:42495952 original size:40 final size:40
Alignment explanation
Indices: 42495755--42495938 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
42495745 TGAATGATGT
* * * *
42495755 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
42495795 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
42495835 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
42495873 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
42495914 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
42495939 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:42495960 original size:79 final size:79
Alignment explanation
Indices: 42495807--42495971 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
42495797 GGACTAAGAT
* **
42495807 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
42495872 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
42495886 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
42495949 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
42495965 CCGAAGG
1 CCGAAGG
42495972 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:42503840 original size:77 final size:80
Alignment explanation
Indices: 42503706--42503888 Score: 216
Period size: 77 Copynumber: 2.3 Consensus size: 80
42503696 TTGAATGATG
*
42503706 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
42503770 TGT-GAGATACTA-A
66 TGTCGAGATACTATA
* * * **
42503783 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
42503845 TTTGTGCGAGTTACTATA
64 TTTGT-CGAGATACTATA
* *
42503863 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
42503889 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
76 1 0.01
77 39 0.43
78 18 0.20
79 17 0.19
80 15 0.17
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTCGAGATACTATA
Found at i:42503895 original size:40 final size:40
Alignment explanation
Indices: 42503706--42503888 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
42503696 TTGAATGATG
* * * *
42503706 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
42503746 TCCGGACTAAGAT-CCGAAGGCATTTGT--GAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
42503784 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
42503823 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
42503864 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
42503889 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
37 14 0.11
38 15 0.12
39 19 0.15
40 67 0.54
41 8 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:42503920 original size:79 final size:77
Alignment explanation
Indices: 42503758--42503921 Score: 190
Period size: 79 Copynumber: 2.1 Consensus size: 77
42503748 CGGACTAAGA
* **
42503758 TCCGAAGGCATTTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGAAGGCATTTGTGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
*
42503823 TCCGGGTTAAGT
66 TCCGGGTTAAAT
* * *
42503835 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGT--GAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-
*
42503898 CTATATCC-GGTTAAAT
61 CTAAATCCGGGTTAAAT
42503914 TCCGAAGG
1 TCCGAAGG
42503922 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
77 14 0.19
78 2 0.03
79 32 0.44
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (77 bp):
TCCGAAGGCATTTGTGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAA
TCCGGGTTAAAT
Found at i:42547781 original size:74 final size:71
Alignment explanation
Indices: 42547581--42547933 Score: 363
Period size: 74 Copynumber: 4.9 Consensus size: 71
42547571 TTTGGGTACT
* * **
42547581 CTGAGGCATCTTTAATTCATGT-TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
1 CTGAGGTATTTTTAATT--TGTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
42547645 AGGTCACACG
64 AGGT--CACG
* * ** **
42547655 CTGAGGTATTTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAGTCAAGCCTC
1 CTGAGGTATTTTTAATTTGTGTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
42547720 AGGTCACG
64 AGGTCACG
*
42547728 CTGAGGTATTTTTAATTCCTGTCGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
1 CTGAGGTATTTTTAATT--TGT-GTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
42547793 CAAGAT-ACG
63 C-AGGTCACG
* * * * *
42547802 TTGAGGTAATTTTAATTTCTG-TTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 CTGAGGTATTTTTAATTTGTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
42547866 GGCACG
66 GTCACG
* * ** * *
42547872 CTGAGGTATTTTTAGTTTATGTTT-AGAAAATTGACTCATCTTGCGAGAGGTGAGTTAAGCCT
1 CTGAGGTATTTTTAATTTGTGTTTCA-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
42547934 TTTAATTTCT
Statistics
Matches: 234, Mismatches: 35, Indels: 23
0.80 0.12 0.08
Matches are distributed among these distances:
69 1 0.00
70 59 0.25
71 35 0.15
72 4 0.02
73 24 0.10
74 65 0.28
75 41 0.18
76 5 0.02
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (71 bp):
CTGAGGTATTTTTAATTTGTGTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
GTCACG
Found at i:42547874 original size:144 final size:145
Alignment explanation
Indices: 42547581--42547895 Score: 384
Period size: 144 Copynumber: 2.2 Consensus size: 145
42547571 TTTGGGTACT
* *
42547581 CTGAGGCATCTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 CTGAGGTATTTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * * **
42547646 GGTCACACGCTGAGGTATTTTTAGTTTATGTTTCAAAAAAATTGACTCATATTGCGAGAGGTGAG
66 AG-CACACGCTGAGGTAATTTTAATTTATGTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAG
*
42547711 TCAAGCCTCAGGTCACG
129 TCAAGCCTCAGGGCACG
* * **
42547728 CTGAGGTATTTTTAATTCCTGTCGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
1 CTGAGGTATTTTTAATTCATGT--TTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
* * * *
42547793 CAAG-ATACGTTGAGGTAATTTTAATTTCTG-TTC-CAAAATCAACTCATATTGCGAGAGGTGAG
64 CAAGCACACGCTGAGGTAATTTTAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAG
** *
42547855 TTGAGCCTCGGGGCACG
129 TCAAGCCTCAGGGCACG
* *
42547872 CTGAGGTATTTTTAGTTTATGTTT
1 CTGAGGTATTTTTAATTCATGTTT
42547896 AGAAAATTGA
Statistics
Matches: 144, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
142 2 0.01
144 58 0.40
146 3 0.02
147 40 0.28
149 41 0.28
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.34
Consensus pattern (145 bp):
CTGAGGTATTTTTAATTCATGTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
AGCACACGCTGAGGTAATTTTAATTTATGTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTC
AAGCCTCAGGGCACG
Found at i:42548131 original size:89 final size:88
Alignment explanation
Indices: 42547943--42548249 Score: 257
Period size: 89 Copynumber: 3.5 Consensus size: 88
42547933 TTTTAATTTC
* * *
42547943 TGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGGGCCTTGGCTCACGTGCTGAGCTAT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCGCACG-GCTGAGCTAT
* *
42548008 TTTCAATTTCTGTTTTTCAAATTC
65 TTTCAAATTCTGTTTTTCAAATTA
** * * *
42548032 TGTTCGTC-AAAATACAACTCATATTGCAAGAGATGAGTTGAGCCTCGGGGCAC-GCTGAGGTAT
1 TGTTTTTCAAAAAT-CAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCGCACGGCTGAGCTAT
* **
42548095 TTTCAAATTCTGTTTTTGATTTGTA
65 TTTCAAATTCTGTTTTTCAAAT-TA
* * ** ** *
42548120 TTTATTTTCAAAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCTCAGTTCAAATGCTGAGAT
1 TGT-TTTTCAAAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCGGCGC-ACGGCTGAGCT
** * *
42548184 ATTTTCAGTTTTTGTTTTT--AATGTC
63 ATTTTCAAATTCTGTTTTTCAAAT-TA
* * *
42548209 TGTTTTT-AAAGAGTCAATTCATATTGCGAGAAATGAGTTGA
1 TGTTTTTCAAA-AATCAACTCATATTGCGAGAGATGAGTTGA
42548250 ACTCAAGATC
Statistics
Matches: 178, Mismatches: 31, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
87 30 0.17
88 39 0.22
89 80 0.45
90 6 0.03
91 23 0.13
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (88 bp):
TGTTTTTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCGCACGGCTGAGCTATT
TTCAAATTCTGTTTTTCAAATTA
Found at i:42548927 original size:22 final size:22
Alignment explanation
Indices: 42548899--42548955 Score: 89
Period size: 22 Copynumber: 2.6 Consensus size: 22
42548889 TCTCAGCAAC
42548899 CCCATACCCCCACTACAACAG-
1 CCCATACCCCCACTACAACAGT
42548920 CCCTATACCCCCACTACAACAGT
1 CCC-ATACCCCCACTACAACAGT
*
42548943 CCCATACCTCCAC
1 CCCATACCCCCAC
42548956 AGTCCTCATA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
21 3 0.09
22 27 0.82
23 3 0.09
ACGTcount: A:0.30, C:0.53, G:0.04, T:0.14
Consensus pattern (22 bp):
CCCATACCCCCACTACAACAGT
Found at i:42550046 original size:27 final size:28
Alignment explanation
Indices: 42549984--42550047 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 28
42549974 TTCTCTTTTG
* *
42549984 TTATTTTTATTAAATATCATCATTATTT
1 TTATTATTATTAAATATCATCAATATTT
*
42550012 TTGA--ATTATT-AATATCATTAATATTT
1 TT-ATTATTATTAAATATCATCAATATTT
42550038 TTATTATTAT
1 TTATTATTAT
42550048 CATTATTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
25 1 0.03
26 16 0.53
27 10 0.33
28 2 0.07
29 1 0.03
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (28 bp):
TTATTATTATTAAATATCATCAATATTT
Found at i:42550782 original size:27 final size:28
Alignment explanation
Indices: 42550741--42550802 Score: 74
Period size: 27 Copynumber: 2.2 Consensus size: 28
42550731 CTATCTTATG
* *
42550741 TATATACTTCTAACACTA-TA-TATATA
1 TATATATTTCCAACACTACTACTATATA
*
42550767 TAGTATATTTCCAACACTACTACTATTTA
1 TA-TATATTTCCAACACTACTACTATATA
42550796 TATATAT
1 TATATAT
42550803 ACATATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 2 0.07
27 14 0.47
28 7 0.23
29 7 0.23
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.44
Consensus pattern (28 bp):
TATATATTTCCAACACTACTACTATATA
Found at i:42561721 original size:10 final size:11
Alignment explanation
Indices: 42561697--42561721 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
42561687 ATTTGGGGGC
42561697 AAAATGAGTGA
1 AAAATGAGTGA
42561708 AAAATGAGTGA
1 AAAATGAGTGA
42561719 AAA
1 AAA
42561722 CCGGAGCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (11 bp):
AAAATGAGTGA
Found at i:42564928 original size:41 final size:42
Alignment explanation
Indices: 42564863--42565037 Score: 151
Period size: 41 Copynumber: 4.0 Consensus size: 42
42564853 CTTCGTTTTC
** * *
42564863 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
* *
42564906 T-GATGGCATAG-CCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
*
42564946 TCGATGCCATAGCCCAGCTATGGTCTTACGCATAATCGCATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTA--CA-CAT---AT-TCACATA
* * *
42564995 TCGATGCAAGAGCCCAGCTATAGTCTTACACGA-ATT-ACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
42565036 TC
1 TC
42565038 TCACTGATGC
Statistics
Matches: 110, Mismatches: 12, Indels: 22
0.76 0.08 0.15
Matches are distributed among these distances:
40 2 0.02
41 40 0.36
42 25 0.23
43 3 0.03
44 2 0.02
45 2 0.02
47 3 0.03
48 2 0.02
49 31 0.28
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:42564989 original size:42 final size:41
Alignment explanation
Indices: 42564863--42564989 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 41
42564853 CTTCGTTTTC
* * *
42564863 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAG-CCAGCTATGGTCTTACACATATTCACAT-A
* *
42564906 T-GATGGCATAGCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCAGCTATGGTCTTACACATATTCACATA
* * *
42564946 TCGATGCCATAGCCCAGCTATGGTCTTACGCATAATCGCATA
1 TCGATGCCATAG-CCAGCTATGGTCTTACACATATTCACATA
42564988 TC
1 TC
42564990 ACATATCGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
40 2 0.03
41 33 0.46
42 36 0.50
43 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (41 bp):
TCGATGCCATAGCCAGCTATGGTCTTACACATATTCACATA
Found at i:42565067 original size:46 final size:47
Alignment explanation
Indices: 42565007--42565115 Score: 112
Period size: 47 Copynumber: 2.3 Consensus size: 47
42564997 GATGCAAGAG
* * ** * * *
42565007 CCCAGCTATAGTCTTACAC-GAATTACATATCTCACTGATGCCATAT
1 CCCAGATATGGTCTTACACAGAAGCACATATCACACCGAGGCCATAT
* * *
42565053 CCCAGATATGGTCTTATACAGTAGCATATATCACACCGAGGCCATAT
1 CCCAGATATGGTCTTACACAGAAGCACATATCACACCGAGGCCATAT
*
42565100 CCTAGATATGGTCTTA
1 CCCAGATATGGTCTTA
42565116 TACGGAAATC
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
46 16 0.31
47 35 0.69
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (47 bp):
CCCAGATATGGTCTTACACAGAAGCACATATCACACCGAGGCCATAT
Found at i:42565172 original size:31 final size:31
Alignment explanation
Indices: 42565137--42565254 Score: 148
Period size: 31 Copynumber: 3.8 Consensus size: 31
42565127 CTTGTCACTT
*
42565137 GTAGCCAAAGCTACCACTATTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
** *
42565168 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
* **
42565199 ATAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCAAAGCTACCACTTTTCACTGATCAG
*
42565230 GTAG-CAGAAGCTACCTCTTTTCACT
1 GTAGCCA-AAGCTACCACTTTTCACT
42565255 TGTCATTTGT
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
30 1 0.01
31 75 0.99
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (31 bp):
GTAGCCAAAGCTACCACTTTTCACTGATCAG
Found at i:42565324 original size:50 final size:50
Alignment explanation
Indices: 42565230--42565406 Score: 273
Period size: 50 Copynumber: 3.5 Consensus size: 50
42565220 CACTGATCAG
* * * * *
42565230 GTAGCAGAAGCTACCTCTTTTCACTTGTCATTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
* *
42565281 GTAGCCGAAGTTATCACTTATCACTTTCACTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
*
42565331 GTAGCCGAAGCTATTACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
42565381 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
42565407 GTTGCCATGG
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 94 0.82
51 21 0.18
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:42569905 original size:19 final size:19
Alignment explanation
Indices: 42569881--42569939 Score: 70
Period size: 19 Copynumber: 3.3 Consensus size: 19
42569871 TTAACTAATA
42569881 ATTGAACTTTCAAAAAATT
1 ATTGAACTTTCAAAAAATT
** *
42569900 ATTGAA--TT-AACTAATA
1 ATTGAACTTTCAAAAAATT
42569916 ATTGAACTTTCAAAAAATT
1 ATTGAACTTTCAAAAAATT
42569935 ATTGA
1 ATTGA
42569940 CTGACCTCCA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
16 11 0.35
17 2 0.06
18 2 0.06
19 16 0.52
ACGTcount: A:0.47, C:0.08, G:0.07, T:0.37
Consensus pattern (19 bp):
ATTGAACTTTCAAAAAATT
Found at i:42569908 original size:35 final size:35
Alignment explanation
Indices: 42569868--42569939 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
42569858 ATTTCAAACC
42569868 GAATTAACTAATAATTGAACTTTCAAAAAATTATT
1 GAATTAACTAATAATTGAACTTTCAAAAAATTATT
42569903 GAATTAACTAATAATTGAACTTTCAAAAAATTATT
1 GAATTAACTAATAATTGAACTTTCAAAAAATTATT
42569938 GA
1 GA
42569940 CTGACCTCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.49, C:0.08, G:0.07, T:0.36
Consensus pattern (35 bp):
GAATTAACTAATAATTGAACTTTCAAAAAATTATT
Found at i:42569921 original size:16 final size:16
Alignment explanation
Indices: 42569868--42569921 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
42569858 ATTTCAAACC
42569868 GAATTAACTAATAATT
1 GAATTAACTAATAATT
** *
42569884 GAACTTTCAAAAAATTATT
1 GAA--TT-AACTAATAATT
42569903 GAATTAACTAATAATT
1 GAATTAACTAATAATT
42569919 GAA
1 GAA
42569922 CTTTCAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
16 14 0.48
17 2 0.07
18 2 0.07
19 11 0.38
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.35
Consensus pattern (16 bp):
GAATTAACTAATAATT
Found at i:42576922 original size:22 final size:22
Alignment explanation
Indices: 42576900--42576959 Score: 68
Period size: 21 Copynumber: 2.7 Consensus size: 22
42576890 TATAAAAAAA
42576900 TAAAAAATTATTAAATATTAAAT
1 TAAAAAATTA-TAAATATTAAAT
* **
42576923 TAAAATATTATAAATATT-TTT
1 TAAAAAATTATAAATATTAAAT
*
42576944 TAAAAAATTAAAAATA
1 TAAAAAATTATAAATA
42576960 ATATGGGCGG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
21 15 0.47
22 8 0.25
23 9 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAAAATTATAAATATTAAAT
Found at i:42581165 original size:20 final size:19
Alignment explanation
Indices: 42581142--42581181 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
42581132 CTTGTATGAT
*
42581142 TTGATTATGGAATTTATTTA
1 TTGATTAAGGAA-TTATTTA
*
42581162 TTGATTAAGTAATTATTTA
1 TTGATTAAGGAATTATTTA
42581181 T
1 T
42581182 CTAAAATTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (19 bp):
TTGATTAAGGAATTATTTA
Found at i:42581358 original size:16 final size:16
Alignment explanation
Indices: 42581337--42581374 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
42581327 ATGGGACTGA
* *
42581337 AAGGGTATTTTTAGCT
1 AAGGGTATTCTTAACT
42581353 AAGGGTATTCTTAACT
1 AAGGGTATTCTTAACT
42581369 AAGGGT
1 AAGGGT
42581375 GGTAAATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.29, C:0.08, G:0.26, T:0.37
Consensus pattern (16 bp):
AAGGGTATTCTTAACT
Found at i:42581429 original size:19 final size:19
Alignment explanation
Indices: 42581394--42581430 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
42581384 CTTAGTTAAG
*
42581394 GATAATTAGTGACTTAATT
1 GATAATTAGAGACTTAATT
*
42581413 GATAATTAGAGATTTAAT
1 GATAATTAGAGACTTAAT
42581431 CAATCATAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.41
Consensus pattern (19 bp):
GATAATTAGAGACTTAATT
Found at i:42584485 original size:46 final size:45
Alignment explanation
Indices: 42584433--42584614 Score: 224
Period size: 46 Copynumber: 4.0 Consensus size: 45
42584423 AGTGTGCTCT
42584433 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATA-CATGGCAAC
42584479 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATA-CATGGCAAC
* * *
42584525 GTGATATGGAATG-GACAAGACCATGGTTGAAAGATACAATGGCAAC
1 CTGATATGAAATGTG-TAAGACCATGGTTGAAAGATAC-ATGGCAAC
* * * * *
42584571 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATAC-ATGGCA
42584615 TCATGTCAAA
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
45 3 0.02
46 117 0.97
47 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.25, T:0.22
Consensus pattern (45 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACATGGCAAC
Found at i:42591526 original size:40 final size:40
Alignment explanation
Indices: 42591473--42591570 Score: 144
Period size: 40 Copynumber: 2.5 Consensus size: 40
42591463 GATATTTTGA
* *
42591473 TAAAAAACGCCACTATAGA-ACGAGCATTAGCGGCGCTTTT
1 TAAAAAACGCCACTATAGACA-GAACATTAGCGGCACTTTT
*
42591513 TTAAAAACGCCACTATAGACAGAACATTAGCGGCACTTTT
1 TAAAAAACGCCACTATAGACAGAACATTAGCGGCACTTTT
*
42591553 TAAAAAACGCCGCTATAG
1 TAAAAAACGCCACTATAG
42591571 GTCGATTATT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
40 51 0.98
41 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.22
Consensus pattern (40 bp):
TAAAAAACGCCACTATAGACAGAACATTAGCGGCACTTTT
Found at i:42591599 original size:40 final size:40
Alignment explanation
Indices: 42591473--42591591 Score: 141
Period size: 40 Copynumber: 3.0 Consensus size: 40
42591463 GATATTTTGA
* *
42591473 TAAAAAACGCCACTATAGAACGAGCATTAGCGGCGCTTTT
1 TAAAAAACGCCACTATAGGACGAACATTAGCGGCGCTTTT
* *
42591513 TTAAAAACGCCACTATA-GACAGAACATTAGCGGCACTTTT
1 TAAAAAACGCCACTATAGGAC-GAACATTAGCGGCGCTTTT
* * ** *
42591553 TAAAAAACGCCGCTATAGGTCGATTATTAGCGACGCTTT
1 TAAAAAACGCCACTATAGGACGAACATTAGCGGCGCTTT
42591592 CTGAAAAAGG
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
39 2 0.03
40 62 0.94
41 2 0.03
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (40 bp):
TAAAAAACGCCACTATAGGACGAACATTAGCGGCGCTTTT
Done.