Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 137 of 290
Found at i:43207551 original size:22 final size:22
Alignment explanation
Indices: 43207504--43207551 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
43207494 GGGTTTTAGA
* *
43207504 GTTTTAAATAAATAAAATTAGG
1 GTTTTAAATAAATAAAACTAGC
*
43207526 GTTTTAAATAAATTAAACTAGC
1 GTTTTAAATAAATAAAACTAGC
43207548 GTTT
1 GTTT
43207552 ATGGTGTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (22 bp):
GTTTTAAATAAATAAAACTAGC
Found at i:43207552 original size:86 final size:86
Alignment explanation
Indices: 43207452--43207615 Score: 231
Period size: 86 Copynumber: 1.9 Consensus size: 86
43207442 AAAAAAATAT
* * * * * *
43207452 TTAAATTAGGGTTTATGATTTTTAAATGAATTAAAT-AAATTAGGGTTTTAGAGTTTTAAATAAA
1 TTAAACTAGCGTTTATGATGTTTAAAT-AAATAAATAAAATTAAGGTTCTAGAGTTTTAAATAAA
43207516 TAAAATTAGGGTTTTAAATAAA
65 TAAAATTAGGGTTTTAAATAAA
* *
43207538 TTAAACTAGCGTTTATGGTGTTTAAATAAATAAATAAAATTAAGGTTCTAGGGTTTTAAATAAAT
1 TTAAACTAGCGTTTATGATGTTTAAATAAATAAATAAAATTAAGGTTCTAGAGTTTTAAATAAAT
*
43207603 TAAATTAGGGTTT
66 AAAATTAGGGTTT
43207616 AGGGTTAAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
85 7 0.10
86 61 0.90
ACGTcount: A:0.41, C:0.02, G:0.16, T:0.41
Consensus pattern (86 bp):
TTAAACTAGCGTTTATGATGTTTAAATAAATAAATAAAATTAAGGTTCTAGAGTTTTAAATAAAT
AAAATTAGGGTTTTAAATAAA
Found at i:43207598 original size:30 final size:29
Alignment explanation
Indices: 43207521--43207660 Score: 97
Period size: 28 Copynumber: 4.7 Consensus size: 29
43207511 ATAAATAAAA
* *
43207521 TTAGGGTTTTAAATAAATTAAACT-AGCGT
1 TTAGGGTTTTAAATAAATAAAATTAAG-GT
43207550 TTATGGTGTTTAAATAAATAAATAAAATTAAGGT
1 TTA-GG-GTTT---TAAATAAATAAAATTAAGGT
* *
43207584 TCTAGGGTTTTAAATAAATTAAATTAGGGT
1 T-TAGGGTTTTAAATAAATAAAATTAAGGT
* * * *
43207614 TTAGGG-TTAAAATTAATTAAATTAGGGT
1 TTAGGGTTTTAAATAAATAAAATTAAGGT
* **
43207642 GTAGTTTTTTAAA-AAATAA
1 TTAGGGTTTTAAATAAATAA
43207661 CATTTTGTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 17
0.76 0.10 0.14
Matches are distributed among these distances:
28 27 0.30
29 13 0.14
30 21 0.23
31 4 0.04
33 4 0.04
34 18 0.20
35 4 0.04
ACGTcount: A:0.41, C:0.02, G:0.17, T:0.39
Consensus pattern (29 bp):
TTAGGGTTTTAAATAAATAAAATTAAGGT
Found at i:43207632 original size:28 final size:30
Alignment explanation
Indices: 43207522--43207641 Score: 111
Period size: 28 Copynumber: 3.9 Consensus size: 30
43207512 TAAATAAAAT
* * *
43207522 TAGGGTTTTAAATAAATTAAACTAGCGTT-
1 TAGGGTTTAAAATAAATTAAATTAGGGTTC
* *
43207551 TATGGTGTTTAAATAAATAAATAAAATTAAGGTTC
1 TA-GG-GTTT--A-AAATAAATTAAATTAGGGTTC
*
43207586 TAGGGTTTTAAATAAATTAAATTAGGGTT-
1 TAGGGTTTAAAATAAATTAAATTAGGGTTC
*
43207615 TAGGG-TTAAAATTAATTAAATTAGGGT
1 TAGGGTTTAAAATAAATTAAATTAGGGT
43207642 GTAGTTTTTT
Statistics
Matches: 75, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
28 20 0.27
29 7 0.09
30 20 0.27
31 4 0.05
33 4 0.05
34 18 0.24
35 2 0.03
ACGTcount: A:0.41, C:0.03, G:0.18, T:0.38
Consensus pattern (30 bp):
TAGGGTTTAAAATAAATTAAATTAGGGTTC
Found at i:43207980 original size:126 final size:126
Alignment explanation
Indices: 43207704--43208079 Score: 610
Period size: 126 Copynumber: 3.0 Consensus size: 126
43207694 TTTGACCTTG
*
43207704 AAAAAATAATTTTGAGAAGACATTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
* * * *
43207769 TGTCAGTAAAATTACATAAAAAAAGCTCCCACGTGGACTCTCTTTTTCTATAGTAGTTCCTA
66 TGTCAGCAAAATTTC-TGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTATAGTAGTTCCTA
* * *
43207831 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTTAAAAATGCTTCAAGCAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
*
43207896 TGTCAGCAAAATTTCTGAAAAAAGCTCCCACATGGACGCTCTTTTTCTACT-GTAGTTCCTA
66 TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTA-TAGTAGTTCCTA
* *
43207957 AAAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGTAGGATGCAC
1 AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
* *
43208022 TGTTAGCAAAATTTCTGAAAAAAGCTCCCACGTGGATGCTCTTTTTCTATAGTAGTTC
66 TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTATAGTAGTTC
43208080 AAGCTTGGCC
Statistics
Matches: 231, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
125 1 0.00
126 155 0.67
127 75 0.32
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.29
Consensus pattern (126 bp):
AAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATGCAC
TGTCAGCAAAATTTCTGAAAAAAGCTCCCACGTGGACGCTCTTTTTCTATAGTAGTTCCTA
Found at i:43211916 original size:43 final size:42
Alignment explanation
Indices: 43211868--43211985 Score: 134
Period size: 42 Copynumber: 2.8 Consensus size: 42
43211858 AACATATACA
*
43211868 ATGCCAACGTCCCAGACGTGGTCTTACATGTAA-TCAAATATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATTC-AATA-TG
* *
43211911 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATTCGATATG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATTCAATATG
* *
43211953 ATGCCAATGTCCCAGACATGGTCTTACACGTAA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAA
43211986 AACAGAAGTT
Statistics
Matches: 64, Mismatches: 6, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
42 31 0.48
43 30 0.47
44 3 0.05
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATTCAATATG
Found at i:43211968 original size:42 final size:43
Alignment explanation
Indices: 43211868--43212032 Score: 151
Period size: 43 Copynumber: 3.8 Consensus size: 43
43211858 AACATATACA
* * *
43211868 ATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCAAATATTG
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCAAATATTG
* *
43211911 ATGCCACTGTCCCAGACAGGGTCTTACACGAAATTC-GATA-TG
1 ATGCCAATGTCCCAGACAGGGTCTTACACGAAA-TCAAATATTG
* * *
43211953 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAGAA-GTTG
1 ATGCCAATGTCCCAGACAGGGTCTTACACG-AAATCA-AATATTG
***
43211997 ATGCCAATGTCTTGGAC-GTGGTCTTACACGAAATCA
1 ATGCCAATGTCCCAGACAG-GGTCTTACACGAAATCA
43212033 CATAACGGAA
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
42 31 0.31
43 38 0.38
44 31 0.31
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAGGGTCTTACACGAAATCAAATATTG
Found at i:43215374 original size:24 final size:24
Alignment explanation
Indices: 43215344--43215435 Score: 130
Period size: 24 Copynumber: 3.8 Consensus size: 24
43215334 ATTGACATTT
*
43215344 AAATCCGCACACATAGTGCTATAC
1 AAATCCGCACACATAGTGCCATAC
*
43215368 AAGTCCGCACACATAGTGCCATAC
1 AAATCCGCACACATAGTGCCATAC
* * *
43215392 AATTTCGCACACATAGTGCCATTC
1 AAATCCGCACACATAGTGCCATAC
*
43215416 AAATTCGCACACATAGTGCC
1 AAATCCGCACACATAGTGCC
43215436 GAAGTCAATT
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.22
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCCATAC
Found at i:43225283 original size:41 final size:42
Alignment explanation
Indices: 43225228--43225327 Score: 134
Period size: 41 Copynumber: 2.4 Consensus size: 42
43225218 AGACTGTTAT
43225228 AAAAAATTATAAAATAT-AAATTAATTAAAATTACATAAAT-A
1 AAAAAATTA-AAAATATAAAATTAATTAAAATTACATAAATGA
*
43225269 AAAAAATTCAAAAAT-TAAAATTAATTAAATTTACATAAATGA
1 AAAAAATT-AAAAATATAAAATTAATTAAAATTACATAAATGA
*
43225311 AAAATATTAAATAATAT
1 AAAAAATTAAA-AATAT
43225328 TCAACATTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
40 1 0.02
41 38 0.73
42 12 0.23
43 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (42 bp):
AAAAAATTAAAAATATAAAATTAATTAAAATTACATAAATGA
Found at i:43228027 original size:21 final size:21
Alignment explanation
Indices: 43227994--43228047 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
43227984 TATAAAGAGC
* *
43227994 TTTGAGAAATTTAATGAGAAA
1 TTTGAGAGATTTAAGGAGAAA
* *
43228015 TTTGAGAGCTTTAGGGAGAAA
1 TTTGAGAGATTTAAGGAGAAA
*
43228036 TTTTAGAGATTT
1 TTTGAGAGATTT
43228048 TTGGCTAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (21 bp):
TTTGAGAGATTTAAGGAGAAA
Found at i:43228999 original size:87 final size:81
Alignment explanation
Indices: 43228821--43229023 Score: 226
Period size: 87 Copynumber: 2.4 Consensus size: 81
43228811 TTGAGTATTG
* ** *
43228821 AGGAAGATGTTGATTTTATAGTCTCATTAAGTTTCACTTCTATGTCTCTTATTCTTTTAGATGAT
1 AGGAAGATGTTGATTTTATGGTCTTTTTAAGTTTCACTTCTATCTCTCTTATTCTTTTAGATGAT
* * *
43228886 TGCATGCTTGTGTTTG
66 TGCATACTTGTGTGTA
* * * *
43228902 AGGAATATGTTGATTTTATGGTCTTTTTAATTTTCACTTCTACATCTCTTCTGTTTTTTTTTTTA
1 AGGAAGATGTTGATTTTATGGTCTTTTTAAGTTTCACTTCT--ATCTC-TC---TTATTCTTTTA
*
43228967 GATGATTGCATATTTGTGTGTA
60 GATGATTGCATACTTGTGTGTA
*
43228989 AGGAAGATGTTGATTTTTATGGTCTTTTAAAGTTT
1 AGGAAGATGTTGA-TTTTATGGTCTTTTTAAGTTT
43229024 TTTGTTTTTT
Statistics
Matches: 100, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
81 36 0.36
83 4 0.04
84 2 0.02
87 39 0.39
88 19 0.19
ACGTcount: A:0.21, C:0.10, G:0.18, T:0.51
Consensus pattern (81 bp):
AGGAAGATGTTGATTTTATGGTCTTTTTAAGTTTCACTTCTATCTCTCTTATTCTTTTAGATGAT
TGCATACTTGTGTGTA
Found at i:43229604 original size:12 final size:12
Alignment explanation
Indices: 43229587--43229614 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
43229577 AAAATCTATT
43229587 TTTTTATTGTTG
1 TTTTTATTGTTG
43229599 TTTTTATTGTTG
1 TTTTTATTGTTG
43229611 TTTT
1 TTTT
43229615 CTTCCTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.14, T:0.79
Consensus pattern (12 bp):
TTTTTATTGTTG
Found at i:43229730 original size:30 final size:30
Alignment explanation
Indices: 43229696--43229758 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
43229686 ACTTATTTTA
*
43229696 TTGTTAATTTTGTTATTATTTTAAAGGTAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
* *
43229726 TTGTTAATTTTGTTATTTTTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
43229756 TTG
1 TTG
43229759 CTTGTTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.22, C:0.02, G:0.16, T:0.60
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:43232042 original size:26 final size:25
Alignment explanation
Indices: 43232013--43232061 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
43232003 CTGAAACACC
* *
43232013 TTAAAACTAGACTTTTACAAACCACG
1 TTAAAAATAGA-TTTTAAAAACCACG
*
43232039 TTAAAAATATATTTTAAAAACCA
1 TTAAAAATAGATTTTAAAAACCA
43232062 TAATCTATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 11 0.55
26 9 0.45
ACGTcount: A:0.49, C:0.16, G:0.04, T:0.31
Consensus pattern (25 bp):
TTAAAAATAGATTTTAAAAACCACG
Found at i:43238302 original size:50 final size:51
Alignment explanation
Indices: 43238225--43238353 Score: 206
Period size: 50 Copynumber: 2.5 Consensus size: 51
43238215 GACCATGGCA
* *
43238225 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
43238276 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
43238326 ACAAGTGAAAAGTGGTACCTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
43238354 CTGATCAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
50 48 0.67
51 24 0.33
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:43238367 original size:31 final size:31
Alignment explanation
Indices: 43238329--43238439 Score: 170
Period size: 31 Copynumber: 3.6 Consensus size: 31
43238319 ACAAATGACA
*
43238329 AGTGAAAAGTGGTACCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
43238360 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
43238391 AGTGAAAAATGGTAGC-TCTGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTC-GGCTACCTGATC
*
43238422 AGTGAATAGTGGTAGCTT
1 AGTGAAAAGTGGTAGCTT
43238440 AAGCTAAAAG
Statistics
Matches: 72, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
30 2 0.03
31 69 0.96
32 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:43241219 original size:42 final size:42
Alignment explanation
Indices: 43241169--43241392 Score: 211
Period size: 42 Copynumber: 5.0 Consensus size: 42
43241159 CTTCATTTTC
** * * *
43241169 TCGATGCCATAGTTCAACTATGGTCTGACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
43241212 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
43241253 TCGATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC---AT---AT-TCACATA
** *
43241302 TCGATGCCATAGCCCAGCCCTAGTCTTACACGGATCACATATCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC--AT---AT-TCACATA
*
43241350 TCGATGCCATAGCCTAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
43241391 TC
1 TC
43241393 TCACTAATAC
Statistics
Matches: 159, Mismatches: 14, Indels: 18
0.83 0.07 0.09
Matches are distributed among these distances:
41 11 0.07
42 63 0.40
43 2 0.01
45 2 0.01
47 2 0.01
48 44 0.28
49 35 0.22
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:43241358 original size:48 final size:48
Alignment explanation
Indices: 43241239--43241392 Score: 245
Period size: 48 Copynumber: 3.2 Consensus size: 48
43241229 TATGGTCTTA
43241239 CACATATTCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACG-AAT
** * *
43241289 CACATATCACATATCGATGCCATAGCCCAGCCCTAGTCTTACACGGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
*
43241337 CACATATCACATATCGATGCCATAGCCTAGCTATGGTCTTACACGAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
43241385 CACATATC
1 CACATATC
43241393 TCACTAATAC
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
48 53 0.56
49 36 0.38
50 6 0.06
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.26
Consensus pattern (48 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACGAAT
Found at i:43243378 original size:11 final size:11
Alignment explanation
Indices: 43243362--43243391 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
43243352 GTTTAACCAG
43243362 TTCAAAACACA
1 TTCAAAACACA
43243373 TTC-AAACACA
1 TTCAAAACACA
43243383 TTCAAAACA
1 TTCAAAACA
43243392 TATAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (11 bp):
TTCAAAACACA
Found at i:43244333 original size:41 final size:40
Alignment explanation
Indices: 43244231--43244336 Score: 96
Period size: 36 Copynumber: 2.7 Consensus size: 40
43244221 CCTTATCGGA
* * * * **
43244231 TAATTCGAAGTAATAATTTGACACCCAGTGCCTTATCGGG
1 TAATCCGAAGTAATAAATTGACACCCAGTACCTCATCAAG
*
43244271 TAA-CCGAAG---TAAATT-AGCACCCAGTACCTCATCAAAT
1 TAATCCGAAGTAATAAATTGA-CACCCAGTACCTCATC-AAG
43244308 TAATCCGAAGTAATAAATTGACACCCAGT
1 TAATCCGAAGTAATAAATTGACACCCAGT
43244337 GTCTCATCGA
Statistics
Matches: 52, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
35 1 0.02
36 19 0.37
37 3 0.06
38 6 0.12
39 5 0.10
40 3 0.06
41 14 0.27
42 1 0.02
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (40 bp):
TAATCCGAAGTAATAAATTGACACCCAGTACCTCATCAAG
Found at i:43244343 original size:41 final size:40
Alignment explanation
Indices: 43244231--43244344 Score: 103
Period size: 41 Copynumber: 2.9 Consensus size: 40
43244221 CCTTATCGGA
* * * **
43244231 TAATTCGAAGTAATAATTTGACACCCAGTGCCTTATCGGG
1 TAATCCGAAGTAATAAATTGACACCCAGTGCCTCATCAAG
* *
43244271 TAA-CCGAAG---TAAATT-AGCACCCAGTACCTCATCAAAT
1 TAATCCGAAGTAATAAATTGA-CACCCAGTGCCTCATC-AAG
*
43244308 TAATCCGAAGTAATAAATTGACACCCAGTGTCTCATC
1 TAATCCGAAGTAATAAATTGACACCCAGTGCCTCATC
43244345 GACTCGAAGT
Statistics
Matches: 58, Mismatches: 9, Indels: 13
0.73 0.11 0.16
Matches are distributed among these distances:
35 1 0.02
36 19 0.33
37 3 0.05
38 6 0.10
39 5 0.09
40 3 0.05
41 20 0.34
42 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.15, T:0.26
Consensus pattern (40 bp):
TAATCCGAAGTAATAAATTGACACCCAGTGCCTCATCAAG
Found at i:43244800 original size:19 final size:19
Alignment explanation
Indices: 43244776--43244825 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
43244766 TTCTCCTTCT
*
43244776 TTCTCTTTTTCTTTCTTTC
1 TTCTCTTTTTCTCTCTTTC
* *
43244795 TTCTCTGTTTCACTCTTTC
1 TTCTCTTTTTCTCTCTTTC
43244814 TGT-TCTTTTTCT
1 T-TCTCTTTTTCT
43244826 ATTTCATTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 24 0.96
20 1 0.04
ACGTcount: A:0.02, C:0.26, G:0.04, T:0.68
Consensus pattern (19 bp):
TTCTCTTTTTCTCTCTTTC
Found at i:43244864 original size:5 final size:5
Alignment explanation
Indices: 43244854--43244962 Score: 200
Period size: 5 Copynumber: 21.8 Consensus size: 5
43244844 ATTTAGTTAT
*
43244854 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAG TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
*
43244904 TATAA CATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
43244954 TATAA TATA
1 TATAA TATA
43244963 TATTTACTTA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 100 1.00
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (5 bp):
TATAA
Found at i:43245016 original size:42 final size:45
Alignment explanation
Indices: 43244944--43245028 Score: 113
Period size: 42 Copynumber: 1.9 Consensus size: 45
43244934 TATAATATAA
* *
43244944 TATAATATAATATAATATATATTTACTTAACTTTTAAGTTTTATTAT
1 TATAATAT-ATATAATATATATTTA-TTAACTTTAAAATTTTATTAT
43244991 TATAATAT-TATAATATATA-TT-TTAACTTTAAAATTTTA
1 TATAATATATATAATATATATTTATTAACTTTAAAATTTTA
43245029 ATTAAATACA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
42 15 0.42
44 2 0.06
45 11 0.31
47 8 0.22
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.53
Consensus pattern (45 bp):
TATAATATATATAATATATATTTATTAACTTTAAAATTTTATTAT
Found at i:43247019 original size:5 final size:5
Alignment explanation
Indices: 43246995--43247071 Score: 58
Period size: 5 Copynumber: 15.8 Consensus size: 5
43246985 TTTTTATAAA
* *
43246995 TATAT TAT-T TA-AT TAGAT TATAT TAT-T ATATTAT TATATT GTAAAT
1 TATAT TATAT TATAT TATAT TATAT TATAT -TA-TAT TATA-T -TATAT
43247041 TATAT TA-AT TATA- T-TAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATA
43247072 AAATAAATCA
Statistics
Matches: 59, Mismatches: 3, Indels: 20
0.72 0.04 0.24
Matches are distributed among these distances:
3 2 0.03
4 13 0.22
5 35 0.59
6 5 0.08
7 4 0.07
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (5 bp):
TATAT
Found at i:43247022 original size:8 final size:8
Alignment explanation
Indices: 43247011--43247065 Score: 65
Period size: 8 Copynumber: 6.2 Consensus size: 8
43247001 ATTTAATTAG
43247011 ATTATATT
1 ATTATATT
43247019 ATTATATT
1 ATTATATT
43247027 ATTATATTGT
1 ATTATA-T-T
43247037 AAATTATATT
1 --ATTATATT
43247047 AATTATATT
1 -ATTATATT
43247056 ATTATATT
1 ATTATATT
43247064 AT
1 AT
43247066 ATTATAAAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
8 24 0.56
9 10 0.23
10 2 0.05
11 1 0.02
12 6 0.14
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (8 bp):
ATTATATT
Found at i:43247959 original size:18 final size:19
Alignment explanation
Indices: 43247926--43247968 Score: 63
Period size: 18 Copynumber: 2.3 Consensus size: 19
43247916 AGTATTGATA
43247926 TTGAATTGAATGAAAATGTG
1 TTGAATTG-ATGAAAATGTG
43247946 TTGAATTG-TGAAAATGTG
1 TTGAATTGATGAAAATGTG
43247964 -TGAAT
1 TTGAAT
43247969 ATATCGATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.22
18 10 0.43
20 8 0.35
ACGTcount: A:0.37, C:0.00, G:0.26, T:0.37
Consensus pattern (19 bp):
TTGAATTGATGAAAATGTG
Found at i:43251870 original size:18 final size:18
Alignment explanation
Indices: 43251844--43251880 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
43251834 ATCATTCGTT
*
43251844 TAACTAGTTCAAAACACA
1 TAACCAGTTCAAAACACA
43251862 TAACCAGTTCAAAACACA
1 TAACCAGTTCAAAACACA
43251880 T
1 T
43251881 TCAAACACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.24, G:0.05, T:0.22
Consensus pattern (18 bp):
TAACCAGTTCAAAACACA
Found at i:43251885 original size:11 final size:11
Alignment explanation
Indices: 43251869--43251898 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
43251859 ACATAACCAG
43251869 TTCAAAACACA
1 TTCAAAACACA
43251880 TTC-AAACACA
1 TTCAAAACACA
43251890 TTCAAAACA
1 TTCAAAACA
43251899 TATCAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (11 bp):
TTCAAAACACA
Found at i:43251888 original size:10 final size:10
Alignment explanation
Indices: 43251873--43251905 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
43251863 AACCAGTTCA
43251873 AAACACATTC
1 AAACACATTC
43251883 AAACACATTC
1 AAACACATTC
43251893 AAA-ACATATC
1 AAACACAT-TC
43251903 AAA
1 AAA
43251906 AATAATCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.58, C:0.24, G:0.00, T:0.18
Consensus pattern (10 bp):
AAACACATTC
Found at i:43254133 original size:25 final size:25
Alignment explanation
Indices: 43254104--43254153 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
43254094 TTCGTAACAT
*
43254104 AACTCAAGTTCATTTTCATCAATGA
1 AACTCAAGATCATTTTCATCAATGA
43254129 AACTCAAGATCATTTTCATCAATGA
1 AACTCAAGATCATTTTCATCAATGA
43254154 CATACCTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (25 bp):
AACTCAAGATCATTTTCATCAATGA
Found at i:43254425 original size:72 final size:72
Alignment explanation
Indices: 43254323--43254583 Score: 289
Period size: 72 Copynumber: 3.6 Consensus size: 72
43254313 ATGCCCGCAT
* * * *
43254323 TTGAGCTACTCAC-GGATCTGTACACAAAGTCAGCACCCGGAACCCAAAGCATTATCATGTAATG
1 TTGAGCTACTCACAGG-TTTATACACAAAGTCAACACCCAGAACCCAAAGCATTATCATGTAATG
43254387 TCCGCTCA
65 TCCGCTCA
* * *
43254395 TTGAGCTACTCACAGGTTTATACTCAAAGTCAACACCTAGACCCCAAAGCATTATCATGTAATGT
1 TTGAGCTACTCACAGGTTTATACACAAAGTCAACACCCAGAACCCAAAGCATTATCATGTAATGT
**
43254460 CCATTCA
66 CCGCTCA
* * * * *
43254467 TTGAGTTACTCACGGGTTTATACACAAAGTCAATACCCAG-ACCCTAAAGCATTAGCACG-AGAT
1 TTGAGCTACTCACAGGTTTATACACAAAGTCAACACCCAGAACCC-AAAGCATTATCATGTA-AT
43254530 G-CTCGCTCA
64 GTC-CGCTCA
** * *
43254539 GCGAGTTACTCACAGGTTTATACACAAAGTCAATACCCAG-ACCCA
1 TTGAGCTACTCACAGGTTTATACACAAAGTCAACACCCAGAACCCA
43254584 CATTACATAT
Statistics
Matches: 163, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
71 6 0.04
72 155 0.95
73 2 0.01
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (72 bp):
TTGAGCTACTCACAGGTTTATACACAAAGTCAACACCCAGAACCCAAAGCATTATCATGTAATGT
CCGCTCA
Found at i:43254898 original size:19 final size:19
Alignment explanation
Indices: 43254869--43254911 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
43254859 TCGAATCTTT
43254869 ATCAA-GAATATCCATATA
1 ATCAATGAATATCCATATA
43254887 ATCAATGAATATCCATATA
1 ATCAATGAATATCCATATA
43254906 ATCAAT
1 ATCAAT
43254912 CATACAATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.30
Consensus pattern (19 bp):
ATCAATGAATATCCATATA
Found at i:43256886 original size:37 final size:37
Alignment explanation
Indices: 43256836--43256912 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
43256826 GCTTTGAACC
*
43256836 CTTGAAACCCTAATTCTCTTTCTTTCTCTTTTTCTTT
1 CTTGAAACCCTAATTCTCCTTCTTTCTCTTTTTCTTT
43256873 CTTGAAACCCTAATTCTCCTTCTTTCTCTTTTTCTTT
1 CTTGAAACCCTAATTCTCCTTCTTTCTCTTTTTCTTT
43256910 CTT
1 CTT
43256913 TCTTCTCTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.13, C:0.29, G:0.03, T:0.56
Consensus pattern (37 bp):
CTTGAAACCCTAATTCTCCTTCTTTCTCTTTTTCTTT
Found at i:43258233 original size:33 final size:33
Alignment explanation
Indices: 43258182--43258343 Score: 96
Period size: 33 Copynumber: 4.8 Consensus size: 33
43258172 ACATTTGTAG
* * *
43258182 TGCCATAACCCAGTTATGGTCTTATCAT-CAGAA
1 TGCCATAGCCTAGCTATGGTCTTA-CATACAGAA
* * *
43258215 TGTCATAGCCTAGCTATGGTCTTACATATAAACA
1 TGCCATAGCCTAGCTATGGTCTTACATACAGA-A
* * * * * * * * *
43258249 CTGTCGTGGTCC-AACCATGGTCTTACGTCCATAG
1 -TGCCATAG-CCTAGCTATGGTCTTACATACAGAA
* * *
43258283 TGCCATAACTTAGTTATGGTCTTATCAT-CAGAA
1 TGCCATAGCCTAGCTATGGTCTTA-CATACAGAA
43258316 TGCCATAGCCTAGCTATGGTCTTACATA
1 TGCCATAGCCTAGCTATGGTCTTACATA
43258344 TAACCATTGG
Statistics
Matches: 93, Mismatches: 29, Indels: 14
0.68 0.21 0.10
Matches are distributed among these distances:
32 7 0.08
33 60 0.65
34 3 0.03
35 21 0.23
36 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (33 bp):
TGCCATAGCCTAGCTATGGTCTTACATACAGAA
Found at i:43262227 original size:250 final size:249
Alignment explanation
Indices: 43261781--43262314 Score: 685
Period size: 250 Copynumber: 2.1 Consensus size: 249
43261771 TACGGTTCTA
* * * *
43261781 ACACTAACTCAATCAAATACATTATTAATATTAGAAATCTTATCACAAGCATATGCGTGTGGAAA
1 ACACAAACTCAATCAAATACATTATTAATA-TATAAATCCTATCACAAACATATGCGTGTGGAAA
** * * * *
43261846 CCACAAATTTTTAACATAAACGTCTGTTTAAAAATCACATACAATAAATTATAAAACGTGTGGTT
65 CCACAAATTTAAAACACAAACATCTGTTTAAAAATCACATACAATAAATAATAAAACGTATGGTT
* *
43261911 TGAAACTAATTATTAATAACACATGAAATATGTAAGTTATTAAAATTAAAAAAAAAAGTAGATTA
130 TGAAACTAATTAATAATAACACATGAAATATGTAACTTATTAAAATTAAAAAAAAAAGTAGATTA
*
43261976 AATTGCTTATCATGGTGTACTAATCAATCTTGAGTCGATGTTGAGTTAACTTGCG
195 AATTGCTTATCATAGTGTACTAATCAATCTTGAGTCGATGTTGAGTTAACTTGCG
* * *
43262031 ACACCAACTCAATCAAATGCATTATTAATACTATAAATCCTATCACAAACGTATGCGTGTGGAAA
1 ACACAAACTCAATCAAATACATTATTAATA-TATAAATCCTATCACAAACATATGCGTGTGGAAA
* * * * * * * * *
43262096 CCAGAAATTTAAAATACAAATATTTGTTTTAGAAATCATATGCAATAAATAATGAAATGTATGGT
65 CCACAAATTTAAAACACAAACATCTG-TTTAAAAATCACATACAATAAATAATAAAACGTATGGT
* * *
43262161 TTGAAACTAATTAATAATAACACATGAAAATATGTATCTTATTAAAA-T-GAAAAAAAATTAGAT
129 TTGAAACTAATTAATAATAACACATG-AAATATGTAACTTATTAAAATTAAAAAAAAAAGTAGAT
* ** * * * *
43262224 TAAATTGTTTATCATAGTGTTGTCATCAATCTTGAGTTGGTGTTGAGTTAACTTGTG
193 TAAATTGCTTATCATAGTGTACTAATCAATCTTGAGTCGATGTTGAGTTAACTTGCG
* *
43262281 ATACAAACTCAATTAAATACATTATTAATATATA
1 ACACAAACTCAATCAAATACATTATTAATATATA
43262315 TAATTGATAT
Statistics
Matches: 243, Mismatches: 39, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
249 4 0.02
250 164 0.67
251 57 0.23
252 18 0.07
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.33
Consensus pattern (249 bp):
ACACAAACTCAATCAAATACATTATTAATATATAAATCCTATCACAAACATATGCGTGTGGAAAC
CACAAATTTAAAACACAAACATCTGTTTAAAAATCACATACAATAAATAATAAAACGTATGGTTT
GAAACTAATTAATAATAACACATGAAATATGTAACTTATTAAAATTAAAAAAAAAAGTAGATTAA
ATTGCTTATCATAGTGTACTAATCAATCTTGAGTCGATGTTGAGTTAACTTGCG
Found at i:43263497 original size:26 final size:26
Alignment explanation
Indices: 43263468--43263520 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
43263458 TCAAACATGC
*
43263468 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGAT-AATTTAACTCCTAGGGGT
* *
43263494 ATTTCGATAATTTATCTCCTAGGGGT
1 ATTTAGATAATTTAACTCCTAGGGGT
43263520 A
1 A
43263521 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGATAATTTAACTCCTAGGGGT
Found at i:43265041 original size:26 final size:26
Alignment explanation
Indices: 43265006--43265165 Score: 223
Period size: 26 Copynumber: 6.2 Consensus size: 26
43264996 TGAAATGCCC
*
43265006 ATCATAGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
43265032 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* * *
43265058 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
43265084 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* **
43265110 ATCATGGAATATTTACCTAATTCATT
1 ATCATGGAACATTTACCTAAACCATT
43265136 ATCATGGAACATTTACCT-AACTCATT
1 ATCATGGAACATTTACCTAAAC-CATT
43265162 ATCA
1 ATCA
43265166 ATTTGTACCA
Statistics
Matches: 119, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
25 1 0.01
26 118 0.99
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.34
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:43265083 original size:52 final size:52
Alignment explanation
Indices: 43265016--43265165 Score: 264
Period size: 52 Copynumber: 2.9 Consensus size: 52
43265006 ATCATAGAAC
*
43265016 ATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATTATCATGAAAT
1 ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCATGAAAT
*
43265068 ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCATGGAAT
1 ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCATGAAAT
* *
43265120 ATTTACCTAATTCATTATCATGGAACATTTACCTAACTCATTATCA
1 ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCA
43265166 ATTTGTACCA
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 94 1.00
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.35
Consensus pattern (52 bp):
ATTTACCTAATCCATTATCATGGAACATTTACCTAACCCATTATCATGAAAT
Found at i:43266172 original size:118 final size:118
Alignment explanation
Indices: 43265999--43266240 Score: 450
Period size: 118 Copynumber: 2.1 Consensus size: 118
43265989 AATGAAAGTA
43265999 AAGTTTAAGCAGTAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTACAATAAAA
1 AAGTTTAAGCAGTAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTACAATAAAA
*
43266064 TTTTACAAAGTTTAATTCAGATACTTATTCGTAGATTTAAAAGGGTTAAAGAT
66 TTTTACAAAGTTTAATTCAGATACTTATTAGTAGATTTAAAAGGGTTAAAGAT
*
43266117 AAGTTTAAGCAGTAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTGCAATAAAA
1 AAGTTTAAGCAGTAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTACAATAAAA
*
43266182 TTTTACTAAGTTTAATTCAGATACTTATTAGTAGATTTAAAAGGGTTAAAGAT
66 TTTTACAAAGTTTAATTCAGATACTTATTAGTAGATTTAAAAGGGTTAAAGAT
43266235 -AGTTTA
1 AAGTTTA
43266241 CTTGAAATGA
Statistics
Matches: 121, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
117 6 0.05
118 115 0.95
ACGTcount: A:0.43, C:0.06, G:0.15, T:0.36
Consensus pattern (118 bp):
AAGTTTAAGCAGTAAATTAGATGTGTTTAACGAAAATAAAATTTGGATATCAATTTACAATAAAA
TTTTACAAAGTTTAATTCAGATACTTATTAGTAGATTTAAAAGGGTTAAAGAT
Found at i:43272424 original size:26 final size:26
Alignment explanation
Indices: 43272388--43272437 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
43272378 TGTTATAGAG
43272388 AGTGACTCTTATACACCTACAACAGC
1 AGTGACTCTTATACACCTACAACAGC
43272414 AGTGACTCTTATACACCTACAACA
1 AGTGACTCTTATACACCTACAACA
43272438 ACATGTCGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.36, C:0.30, G:0.10, T:0.24
Consensus pattern (26 bp):
AGTGACTCTTATACACCTACAACAGC
Found at i:43272949 original size:20 final size:20
Alignment explanation
Indices: 43272920--43272965 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
43272910 ATCATGTTTG
*
43272920 ATAGTACAAATTGTAATTAC
1 ATAGTTCAAATTGTAATTAC
43272940 ATAGTTCAAATTGTAATTAC
1 ATAGTTCAAATTGTAATTAC
43272960 ATAGTT
1 ATAGTT
43272966 ATATTAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.41, C:0.09, G:0.11, T:0.39
Consensus pattern (20 bp):
ATAGTTCAAATTGTAATTAC
Found at i:43275734 original size:28 final size:26
Alignment explanation
Indices: 43275676--43275740 Score: 73
Period size: 28 Copynumber: 2.5 Consensus size: 26
43275666 ATGATATATG
43275676 TAAAATA--TATT-TTTATTTTATAA
1 TAAAATATTTATTATTTATTTTATAA
* *
43275699 TTACATATTTATTATTTGATTTTATGAA
1 TAAAATATTTATTATTT-ATTTTAT-AA
43275727 TAAAATATTTATTA
1 TAAAATATTTATTA
43275741 ATTAAAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
23 5 0.15
25 4 0.12
26 3 0.09
27 7 0.21
28 14 0.42
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (26 bp):
TAAAATATTTATTATTTATTTTATAA
Found at i:43278786 original size:22 final size:22
Alignment explanation
Indices: 43278761--43278803 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
43278751 AATTAAATTT
43278761 TTAAATT-CAAAAAATATAAAAA
1 TTAAATTCCAAAAAAT-TAAAAA
*
43278783 TTAAATTCCTAAAAATTAAAA
1 TTAAATTCCAAAAAATTAAAA
43278804 TAAGAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (22 bp):
TTAAATTCCAAAAAATTAAAAA
Found at i:43285534 original size:48 final size:48
Alignment explanation
Indices: 43285415--43285638 Score: 226
Period size: 46 Copynumber: 4.8 Consensus size: 48
43285405 TTTGTACGGT
* * * * *
43285415 GATATGTATGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCAC-A
1 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
* * * *
43285462 -ACA-TGAGAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCCTCGA
1 GATATTTA-AGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
* *
43285509 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCATTGA
1 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
* * *
43285557 GACGA---GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGT
1 GA-TATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
** * *
43285603 GATATACAAGCTAGTGTAAGACCTATCTGGGACATG
1 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATG
43285639 GTGTTAGCTT
Statistics
Matches: 145, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
45 2 0.01
46 73 0.50
47 1 0.01
48 66 0.46
49 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
Found at i:43285576 original size:94 final size:94
Alignment explanation
Indices: 43285415--43285638 Score: 297
Period size: 94 Copynumber: 2.4 Consensus size: 94
43285405 TTTGTACGGT
* * * *
43285415 GATATGTATGCTAGTGTAAGACATGTCTAGGACATGCATCAGCCACAACATGAGAGCCAGTGTAA
1 GATATATAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAACACGAGAGCCAGTGTAA
43285480 GACATGTCTGAGACATGCATCGGCCTCGA
66 GACATGTCTGAGACATGCATCGGCCTCGA
* * ** * *
43285509 GATATTTAAGCTAGTGTAAGACATGTCTGGGACATGCATC-GGCATTGAGACGAGAGCTAGTGTA
1 GATATATAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-CAACACGAGAGCCAGTGTA
* *
43285573 AGACATGTCTGGGACATGCATCGGCCTCGT
65 AGACATGTCTGAGACATGCATCGGCCTCGA
* * *
43285603 GATATACAAGCTAGTGTAAGACCTATCTGGGACATG
1 GATATATAAGCTAGTGTAAGACATGTCTGGGACATG
43285639 GTGTTAGCTT
Statistics
Matches: 114, Mismatches: 15, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
93 3 0.03
94 111 0.97
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (94 bp):
GATATATAAGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAACACGAGAGCCAGTGTAA
GACATGTCTGAGACATGCATCGGCCTCGA
Found at i:43285716 original size:49 final size:49
Alignment explanation
Indices: 43285656--43285783 Score: 168
Period size: 49 Copynumber: 2.6 Consensus size: 49
43285646 CTTGTAGTGT
*
43285656 GTCAGTGTAAGACCAGTCTGGGACATGGCATCGACAC-CGATAGATGAGA
1 GTCAGTGTAAGACCAGTCTGGGACATGGCATCGAC-CTCGATAGATGAAA
* * * * *
43285705 GTCAGTGTAAGACCTGTCTGGGACATGGCATTGGCCTCGCTATATGAAA
1 GTCAGTGTAAGACCAGTCTGGGACATGGCATCGACCTCGATAGATGAAA
*
43285754 GCCAGTGTAAGACCATGTCTGGGACATGGC
1 GTCAGTGTAAGACCA-GTCTGGGACATGGC
43285784 GTCGGCATCT
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
48 1 0.01
49 54 0.78
50 14 0.20
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (49 bp):
GTCAGTGTAAGACCAGTCTGGGACATGGCATCGACCTCGATAGATGAAA
Found at i:43288709 original size:93 final size:93
Alignment explanation
Indices: 43288580--43288751 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
43288570 GCCCATAAGT
* * *
43288580 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAAATCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAAATCAA
43288645 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
43288673 GAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAAATCAA
*
43288738 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
43288752 CAAATATCCC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAAATCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:43288747 original size:46 final size:46
Alignment explanation
Indices: 43288572--43288747 Score: 210
Period size: 46 Copynumber: 3.8 Consensus size: 46
43288562 TGTAACCCGC
* * *
43288572 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
* * * *
43288618 CCATAAGTGAACTCGGACTCAAATCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-CTCGCAT
* *** *
43288664 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACGCTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
*
43288711 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
43288748 TGCCCAAATA
Statistics
Matches: 107, Mismatches: 20, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
46 72 0.67
47 35 0.33
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCAT
Found at i:43288766 original size:46 final size:45
Alignment explanation
Indices: 43288623--43288766 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 45
43288613 CGCATCCATA
* * * *
43288623 AGTGAACTCGGACTCAAATCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * *
43288671 --TCGAACTCGGACTCAACTCAACGAGTTCGGACGCTC-GCATCCATA
1 AGT-GAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
43288716 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
43288762 AGTGA
1 AGTGA
43288767 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 16
0.72 0.12 0.15
Matches are distributed among these distances:
43 4 0.05
46 38 0.50
47 30 0.39
48 4 0.05
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:43292112 original size:38 final size:38
Alignment explanation
Indices: 43292080--43292208 Score: 179
Period size: 38 Copynumber: 3.4 Consensus size: 38
43292070 GCAGGCTATA
43292080 TGCTGGAATTATATCCGGGTTAAATCTCGCAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCTCGCAGGCTTCG
*
43292118 TGCTGGTAA-TATATCCGGGTTAAATCTCGCAAGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCTCGCAGGCTTCG
** * * *
43292156 TGCTGTTATTATATCCGGGTTAAATCCCGCAGGCCTGG
1 TGCTGGAATTATATCCGGGTTAAATCTCGCAGGCTTCG
*
43292194 TGCTGGTATTATATC
1 TGCTGGAATTATATC
43292209 TGAGTTTAAA
Statistics
Matches: 81, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
37 1 0.01
38 78 0.96
39 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCTCGCAGGCTTCG
Found at i:43299987 original size:48 final size:47
Alignment explanation
Indices: 43299925--43300098 Score: 208
Period size: 48 Copynumber: 3.7 Consensus size: 47
43299915 TGATATGTGT
* *
43299925 GCTAGTGTAAGACATGTCTGGGACATACATTGGCCTTGAGATATATAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATA-AA
* * * *
43299973 GCTAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAT-GAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAAA
* * *
43300019 GCTAGTGTAAAACATGTCTAGGACATGCATCGGCC-TCACGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-GATATA-AA
*
43300067 GCTAGTGTAAGACTTGTCTGGGACATGGCATC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATC
43300099 AGCTTGTGGT
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
45 2 0.02
46 35 0.33
47 2 0.02
48 62 0.58
49 5 0.05
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGATATAAA
Found at i:43300086 original size:94 final size:95
Alignment explanation
Indices: 43299925--43300098 Score: 262
Period size: 94 Copynumber: 1.8 Consensus size: 95
43299915 TGATATGTGT
* * * * *
43299925 GCTAGTGTAAGACATGTCTGGGACATACATTGGCCTTGAGATATATAAGCTAGTGTAAGACATGT
1 GCTAGTGTAAAACATGTCTAGGACATACATCGGCCTTCAGATATACAAGCTAGTGTAAGACATGT
43299990 CTGGGACAT-GCATCGACATTGAGATGAGA
66 CTGGGACATGGCATCGACATTGAGATGAGA
* *
43300019 GCTAGTGTAAAACATGTCTAGGACATGCATCGGCC-TCACGATATACAAGCTAGTGTAAGACTTG
1 GCTAGTGTAAAACATGTCTAGGACATACATCGGCCTTCA-GATATACAAGCTAGTGTAAGACATG
43300083 TCTGGGACATGGCATC
65 TCTGGGACATGGCATC
43300099 AGCTTGTGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
93 2 0.03
94 64 0.90
95 5 0.07
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (95 bp):
GCTAGTGTAAAACATGTCTAGGACATACATCGGCCTTCAGATATACAAGCTAGTGTAAGACATGT
CTGGGACATGGCATCGACATTGAGATGAGA
Found at i:43300188 original size:49 final size:50
Alignment explanation
Indices: 43300116--43300245 Score: 156
Period size: 49 Copynumber: 2.6 Consensus size: 50
43300106 GGTGTGTCAA
* * *
43300116 TGTAAGACCTGTCTGGGACATGGCATTGACAC-CGATAGATGAGAGCCAC
1 TGTAAGACCAGTCTGGGACATGGCATCGACACTCGATAGATGAAAGCCAC
* * * * * *
43300165 TGTAAGACCAGTTTAGGACATGGCATCGGC-CTCGTTATATGAAAGCCAG
1 TGTAAGACCAGTCTGGGACATGGCATCGACACTCGATAGATGAAAGCCAC
43300214 TGTAAGACCATGTCTGGGACATGGCATCGACA
1 TGTAAGACCA-GTCTGGGACATGGCATCGACA
43300246 TATTAACCCA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.02
49 48 0.73
50 17 0.26
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (50 bp):
TGTAAGACCAGTCTGGGACATGGCATCGACACTCGATAGATGAAAGCCAC
Found at i:43300191 original size:142 final size:139
Alignment explanation
Indices: 43299978--43300241 Score: 336
Period size: 142 Copynumber: 1.9 Consensus size: 139
43299968 TATAAGCTAG
** * *
43299978 TGTAAGACATGTCTGGGACATGCATCGACATTGAGATGAGAGCTAGTGTAAAACATGTCTAGGAC
1 TGTAAGACATGTCTGGGACATGCATCGACACCGAGATGAGAGCCACTGTAAAACATGTCTAGGAC
* *
43300043 ATGCATCGGCCTCACGATAT-ACAAGCTAGTGTAAGA-CTTGTCTGGGACATGGCATCAGCTTGT
66 ATGCATCGGCCTCACGATATGA-AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGT
43300106 GGTGTGTCAA
130 GGTGTGTCAA
* * * *
43300116 TGTAAGACCTGTCTGGGACATGGCATTGACACCGATAGATGAGAGCCACTGTAAGACCA-GTTTA
1 TGTAAGACATGTCTGGGACAT-GCATCGACACCG--AGATGAGAGCCACTGTAA-AACATGTCTA
***
43300180 GGACATGGCATCGGCCTCGTTATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
62 GGACAT-GCATCGGCCTCACGATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
43300242 GACATATTAA
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
138 20 0.19
139 9 0.08
141 26 0.25
142 31 0.29
143 20 0.19
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.25
Consensus pattern (139 bp):
TGTAAGACATGTCTGGGACATGCATCGACACCGAGATGAGAGCCACTGTAAAACATGTCTAGGAC
ATGCATCGGCCTCACGATATGAAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCTTGTG
GTGTGTCAA
Found at i:43302829 original size:17 final size:17
Alignment explanation
Indices: 43302807--43302841 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
43302797 GTTATAGATG
43302807 CCTTTATCATGGGAGTA
1 CCTTTATCATGGGAGTA
43302824 CCTTTATCATGGGAGTA
1 CCTTTATCATGGGAGTA
43302841 C
1 C
43302842 AAAACGACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (17 bp):
CCTTTATCATGGGAGTA
Found at i:43307798 original size:69 final size:69
Alignment explanation
Indices: 43307679--43308171 Score: 467
Period size: 69 Copynumber: 7.2 Consensus size: 69
43307669 CAGGATAAAA
* * * * *
43307679 AGTTAGTGATAGCAAAGCTCCCAAG-T-T-ATATTAAGGCTCGCAGGATAAAAACTGCAGCCTGT
1 AGTTAGCGAGAGCAAAGCTCCC-AGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCT
43307741 AACAC
65 AACAC
* * * * * * * * *
43307746 AATTAGCAACAGCAAAGCTCCTAGCTATCATACAAAGGCTCGCAGGATAAAAA-TCCCAGCCTCC
1 AGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACT-GCAGCCTCT
*
43307810 AACAT
65 AACAC
* * * *
43307815 AGTTAGCGAGAGCAAACCTCCCAGCTATCATACTAAGGCTTGCAGGATAAAAACCGCAGCCTTTA
1 AGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTA
43307880 ACAC
66 ACAC
* * * * * * * * * *
43307884 AGTTAGTGAGGGTAAAGCTCCTAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTA
1 AGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTA
43307949 ACAC
66 ACAC
* * * * * * *
43307953 AATTTA-CGTGAGCAAAGCTCCTAGTTGTCATACTAAGGCTTGTAGGATAAAAACCGTAGCCTCT
1 -AGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCT
*
43308017 AACAT
65 AACAC
* * * * *
43308022 AGTTAGCGAGAGCAAAGCTCCCAACTGTCATAGTAAGGCTTGAAGGATAAAAAGT-CTAGCCTCC
1 AGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGC-AGCCTCT
43308086 AACAC
65 AACAC
* * * * * *
43308091 AGTTAGTGAGAGCAAAGGTCCCACCTGTCATACTAAGGCTTGTAGGATAAAGACTGCAGCCTCCA
1 AGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTA
*
43308156 ACAT
66 ACAC
43308160 AGTTAGCGAGAG
1 AGTTAGCGAGAG
43308172 TTAAAAACTT
Statistics
Matches: 347, Mismatches: 70, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
66 2 0.01
67 18 0.05
68 6 0.02
69 316 0.91
70 5 0.01
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.21
Consensus pattern (69 bp):
AGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACTGCAGCCTCTA
ACAC
Found at i:43307925 original size:138 final size:138
Alignment explanation
Indices: 43307677--43308171 Score: 516
Period size: 138 Copynumber: 3.6 Consensus size: 138
43307667 CACAGGATAA
* * * * *
43307677 AAAGTTAGTGATAGCAAAGCTCCCAAG-T-T-ATATTAAGGCTCGCAGGATAAAAACTGCAGCCT
1 AAAGTTAGCGAGAGCAAAGCTCCC-AGCTGTCATACTAAGGCTTGCAGGATAAAAACCGCAGCCT
* * * * * * *
43307739 GTAACACAATTAGCAACAGCAAAGCTCCTAGCTATCATACAAAGGCTCGCAGGATAAAAATCCCA
65 CTAACACAGTTAGCGAGAGCAAAGCTCCTAACTGTCATACTAAGGCTCGCAGGATAAAAATCCCA
43307804 GCCTCCAAC
130 GCCTCCAAC
* * * *
43307813 ATAGTTAGCGAGAGCAAACCTCCCAGCTATCATACTAAGGCTTGCAGGATAAAAACCGCAGCCTT
1 AAAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACCGCAGCCTC
* * * * *
43307878 TAACACAGTTAGTGAGGGTAAAGCTCCTAACTGTCACACTAAGGCTCGCAAGATAAAAA-CCGCA
66 TAACACAGTTAGCGAGAGCAAAGCTCCTAACTGTCATACTAAGGCTCGCAGGATAAAAATCC-CA
* *
43307942 ACCTCTAAC
130 GCCTCCAAC
* * * * * *
43307951 ACAATTTA-CGTGAGCAAAGCTCCTAGTTGTCATACTAAGGCTTGTAGGATAAAAACCGTAGCCT
1 A-AAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACCGCAGCCT
* * * * * *
43308015 CTAACATAGTTAGCGAGAGCAAAGCTCCCAACTGTCATAGTAAGGCTTGAAGGATAAAAAGT-CT
65 CTAACACAGTTAGCGAGAGCAAAGCTCCTAACTGTCATACTAAGGCTCGCAGGATAAAAA-TCCC
43308079 AGCCTCCAAC
129 AGCCTCCAAC
* * * * * * *
43308089 ACAGTTAGTGAGAGCAAAGGTCCCACCTGTCATACTAAGGCTTGTAGGATAAAGACTGCAGCCTC
1 AAAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACCGCAGCCTC
* *
43308154 CAACATAGTTAGCGAGAG
66 TAACACAGTTAGCGAGAG
43308172 TTAAAAACTT
Statistics
Matches: 295, Mismatches: 56, Indels: 14
0.81 0.15 0.04
Matches are distributed among these distances:
135 2 0.01
136 21 0.07
137 7 0.02
138 260 0.88
139 5 0.02
ACGTcount: A:0.36, C:0.24, G:0.20, T:0.21
Consensus pattern (138 bp):
AAAGTTAGCGAGAGCAAAGCTCCCAGCTGTCATACTAAGGCTTGCAGGATAAAAACCGCAGCCTC
TAACACAGTTAGCGAGAGCAAAGCTCCTAACTGTCATACTAAGGCTCGCAGGATAAAAATCCCAG
CCTCCAAC
Found at i:43308071 original size:207 final size:207
Alignment explanation
Indices: 43307679--43308130 Score: 547
Period size: 207 Copynumber: 2.2 Consensus size: 207
43307669 CAGGATAAAA
* * * * * * * *
43307679 AGTTAGTGATAGCAAAGCTCCCAA--GTTATATTAAGGCTCGCAGGATAAAAACTGCAGCCTGTA
1 AGTTAGTGAGAGCAAAGCTCCCAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTA
43307742 ACACAATTAGCAACAGCAAAGCTCCTAGCTATCATACAAAGGCTCGCAGGATAAAAATCCCAGCC
66 ACACAATTAGCAACAGCAAAGCTCCTAGCTATCATACAAAGGCTCGCAGGATAAAAATCCCAGCC
* *
43307807 TCCAACATAGTTAGCGAGAGCAAACCTCCCAGCTATCATACTAAGGCTTGCAGGATAAAAACCG-
131 TCCAACATAGTTAGCGAGAGCAAACCTCCCAACTATCATACTAAGGCTTGAAGGATAAAAA--GT
**
43307871 C-AGCCTTTAACAC
194 CTAGCCTCCAACAC
* * *
43307884 AGTTAGTGAGGGTAAAGCTCCTAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTA
1 AGTTAGTGAGAGCAAAGCTCCCAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTA
*** * * * * * *
43307949 ACACAATTTA-CGTGAGCAAAGCTCCTAGTTGTCATACTAAGGCTTGTAGGATAAAAA-CCGTAG
66 ACACAA-TTAGCAACAGCAAAGCTCCTAGCTATCATACAAAGGCTCGCAGGATAAAAATCC-CAG
* * * *
43308012 CCTCTAACATAGTTAGCGAGAGCAAAGCTCCCAACTGTCATAGTAAGGCTTGAAGGATAAAAAGT
129 CCTCCAACATAGTTAGCGAGAGCAAACCTCCCAACTATCATACTAAGGCTTGAAGGATAAAAAGT
43308077 CTAGCCTCCAACAC
194 CTAGCCTCCAACAC
* * *
43308091 AGTTAGTGAGAGCAAAGGTCCCACCTGTCATACTAAGGCT
1 AGTTAGTGAGAGCAAAGCTCCCAACTGTCACACTAAGGCT
43308131 TGTAGGATAA
Statistics
Matches: 207, Mismatches: 34, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
205 21 0.10
206 3 0.01
207 180 0.87
208 3 0.01
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.21
Consensus pattern (207 bp):
AGTTAGTGAGAGCAAAGCTCCCAACTGTCACACTAAGGCTCGCAAGATAAAAACCGCAACCTCTA
ACACAATTAGCAACAGCAAAGCTCCTAGCTATCATACAAAGGCTCGCAGGATAAAAATCCCAGCC
TCCAACATAGTTAGCGAGAGCAAACCTCCCAACTATCATACTAAGGCTTGAAGGATAAAAAGTCT
AGCCTCCAACAC
Found at i:43314104 original size:29 final size:28
Alignment explanation
Indices: 43314072--43314135 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 28
43314062 GGGCCAGATG
*
43314072 GGCCATATGAATGTGATTTGGGCCTAATA
1 GGCCATATGAATGAGA-TTGGGCCTAATA
* *
43314101 GGCCATATGAATGAGATTGGGCCTAGTG
1 GGCCATATGAATGAGATTGGGCCTAATA
43314129 GGCCATA
1 GGCCATA
43314136 AGCATGTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 17 0.53
29 15 0.47
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (28 bp):
GGCCATATGAATGAGATTGGGCCTAATA
Found at i:43314132 original size:28 final size:28
Alignment explanation
Indices: 43314057--43314135 Score: 97
Period size: 29 Copynumber: 2.8 Consensus size: 28
43314047 GCTCTGAGTG
*
43314057 GATTCGGGCC-AGATGGGCCATATGAATGT
1 GATT-GGGCCTAG-TGGGCCATATGAATGA
* *
43314086 GATTTGGGCCTAATAGGCCATATGAATGA
1 GA-TTGGGCCTAGTGGGCCATATGAATGA
43314115 GATTGGGCCTAGTGGGCCATA
1 GATTGGGCCTAGTGGGCCATA
43314136 AGCATGTAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
28 17 0.40
29 23 0.53
30 3 0.07
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (28 bp):
GATTGGGCCTAGTGGGCCATATGAATGA
Found at i:43317320 original size:31 final size:31
Alignment explanation
Indices: 43317266--43317350 Score: 89
Period size: 31 Copynumber: 2.7 Consensus size: 31
43317256 TGTGTGTGTG
* * *
43317266 GGCCACACGGGCGTGTGGACCCACATAGGCA
1 GGCCACACGAGCGTATGGACCCACACAGGCA
* * *
43317297 GGCTACACGAGCGTATGGGCCCACACAGGTA
1 GGCCACACGAGCGTATGGACCCACACAGGCA
* * *
43317328 GGCCACACGGGCATGTGGACCCA
1 GGCCACACGAGCGTATGGACCCA
43317351 TTATACGAAA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.24, C:0.32, G:0.34, T:0.11
Consensus pattern (31 bp):
GGCCACACGAGCGTATGGACCCACACAGGCA
Found at i:43321041 original size:17 final size:17
Alignment explanation
Indices: 43320999--43321041 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
43320989 GTGGAATGGG
* *
43320999 TTTACAAAAACAAAGAT
1 TTTATAAAAACAAAAAT
*
43321016 TTT-TGAAAACAAAAAT
1 TTTATAAAAACAAAAAT
43321032 TTTATAAAAA
1 TTTATAAAAA
43321042 TTGAAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.30
Consensus pattern (17 bp):
TTTATAAAAACAAAAAT
Found at i:43329215 original size:37 final size:34
Alignment explanation
Indices: 43329165--43329236 Score: 81
Period size: 37 Copynumber: 2.0 Consensus size: 34
43329155 AGTTGTGCCA
* *
43329165 TTTTTCTGACCATCTTTCCTCCTCCTCCTTTCTTTTC
1 TTTTTCTCACCATC-TACCTCCTCCT-C-TTCTTTTC
* *
43329202 TTTTTCTCTCCATCTACCTTCTCCTCTTCTTTTC
1 TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
43329236 T
1 T
43329237 CCATAGCCGA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 9 0.29
35 1 0.03
36 9 0.29
37 12 0.39
ACGTcount: A:0.06, C:0.38, G:0.01, T:0.56
Consensus pattern (34 bp):
TTTTTCTCACCATCTACCTCCTCCTCTTCTTTTC
Found at i:43329334 original size:15 final size:16
Alignment explanation
Indices: 43329302--43329334 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
43329292 TAAGTCTTAC
43329302 AGCCGAATATCACAAA
1 AGCCGAATATCACAAA
*
43329318 AGCCGAA-ATCCCAAA
1 AGCCGAATATCACAAA
43329333 AG
1 AG
43329335 TTCATATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.48, C:0.27, G:0.15, T:0.09
Consensus pattern (16 bp):
AGCCGAATATCACAAA
Found at i:43330450 original size:27 final size:26
Alignment explanation
Indices: 43330410--43330521 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
43330400 AGGAAGCGTC
*
43330410 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
43330437 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
*
43330464 CTGGTGGCTCTACCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
43330492 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
43330518 CTGG
1 CTGG
43330522 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
26 8 0.11
27 49 0.66
28 16 0.22
29 1 0.01
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:43330514 original size:54 final size:54
Alignment explanation
Indices: 43330410--43330521 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
43330400 AGGAAGCGTC
* *
43330410 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * *
43330464 CTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
43330518 CTGG
1 CTGG
43330522 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.18, C:0.24, G:0.21, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:43339309 original size:17 final size:18
Alignment explanation
Indices: 43339287--43339322 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
43339277 CACATTGAAG
43339287 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
43339304 TGTTTTCATTGAAAACCT
1 TGTTTTCAGTGAAAACCT
43339322 T
1 T
43339323 CTTTAAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:43340573 original size:28 final size:28
Alignment explanation
Indices: 43340537--43340616 Score: 99
Period size: 29 Copynumber: 2.8 Consensus size: 28
43340527 CATACATGCT
* * *
43340537 TATGACCCACTAGGCCCAATCTCAT-TCG
1 TATGGCCCACTAGGCCCAATCACATCT-A
*
43340565 TATGGCCCATTAGGCCCAAATCACATCTA
1 TATGGCCCACTAGGCCC-AATCACATCTA
43340594 TATGGCCCACTAGGCCCAATCAC
1 TATGGCCCACTAGGCCCAATCAC
43340617 TTTTACAGTC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
28 21 0.47
29 23 0.51
30 1 0.02
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (28 bp):
TATGGCCCACTAGGCCCAATCACATCTA
Found at i:43340878 original size:16 final size:16
Alignment explanation
Indices: 43340841--43340871 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
43340831 CAAACTTTTG
43340841 GCTTTTTGGCATTTCA
1 GCTTTTTGGCATTTCA
43340857 GCTTTTTGGCATTTC
1 GCTTTTTGGCATTTC
43340872 GACTTTTCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.10, C:0.19, G:0.19, T:0.52
Consensus pattern (16 bp):
GCTTTTTGGCATTTCA
Found at i:43349678 original size:50 final size:50
Alignment explanation
Indices: 43349650--43349785 Score: 245
Period size: 50 Copynumber: 2.7 Consensus size: 50
43349640 CTTCAGGTGT
43349650 GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
1 GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
* *
43349700 GAGTTATTCCTTTATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
1 GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
*
43349750 GAGTTATGCCTTGATTTGGCTTCGGGCCATGGTATA
1 GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATA
43349786 TGTACTTATC
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 81 1.00
ACGTcount: A:0.19, C:0.13, G:0.32, T:0.36
Consensus pattern (50 bp):
GAGTTATGCCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTGGAGAG
Found at i:43364588 original size:48 final size:48
Alignment explanation
Indices: 43364514--43364747 Score: 159
Period size: 48 Copynumber: 5.1 Consensus size: 48
43364504 TGCCAAATAA
* * * * *
43364514 ATAGCTGAAGCTTTATCAATCTCGCAC-CATAAGTGCCAATATGTATAT
1 ATAGCCGAAGCTATCTCAATCACGCACAC-TAAGTGCCAATATATATAT
* *
43364562 ATAGCCGGAGCTATCTCAATCACGCACACTAAGTGCCAATATATGTAT
1 ATAGCCGAAGCTATCTCAATCACGCACACTAAGTGCCAATATATATAT
* * * * *
43364610 ATAGCCGAAGTTATCT-AATCTCACACACTTAGTGCC-A-ATGTAT-T
1 ATAGCCGAAGCTATCTCAATCACGCACACTAAGTGCCAATATATATAT
*** * * *
43364654 -TAGTCC-AAGCTAT-TTGGTCTCGTACACTTAGTGCC-A-ATATAT-T
1 ATAG-CCGAAGCTATCTCAATCACGCACACTAAGTGCCAATATATATAT
* * * *
43364697 -TAGCCGAAGCTATCTCAGTCTCGCACACTTAGTGCCAATGTATAATAT
1 ATAGCCGAAGCTATCTCAATCACGCACACTAAGTGCCAATATAT-ATAT
43364745 ATA
1 ATA
43364748 TAATTGAAGC
Statistics
Matches: 152, Mismatches: 24, Indels: 19
0.78 0.12 0.10
Matches are distributed among these distances:
42 3 0.02
43 42 0.28
44 22 0.14
45 5 0.03
46 4 0.03
47 19 0.12
48 54 0.36
49 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (48 bp):
ATAGCCGAAGCTATCTCAATCACGCACACTAAGTGCCAATATATATAT
Found at i:43364681 original size:43 final size:44
Alignment explanation
Indices: 43364491--43364739 Score: 193
Period size: 43 Copynumber: 5.5 Consensus size: 44
43364481 TACCCAAAAA
* ** * * * *
43364491 CTCGCACACTTAGTGCCAA-ATAAATAGCTGAAGCTTTATCAAT
1 CTCGCACACTTAGTGCCAATGTATTTAGCCGAAGCTATCTCAGT
* * *
43364534 CTCGCAC-CATAAGTGCCAATATGTATATATAGCCGGAGCTATCTCAAT
1 CTCGCACAC-TTAGTGCC-A-ATGTAT-T-TAGCCGAAGCTATCTCAGT
* * * * *
43364582 CACGCACACTAAGTGCCAATATATGTATATAGCCGAAGTTATCT-AAT
1 CTCGCACACTTAGTGCC---A-ATGTATTTAGCCGAAGCTATCTCAGT
* **
43364629 CTCACACACTTAGTGCCAATGTATTTAGTCC-AAGCTAT-TTGGT
1 CTCGCACACTTAGTGCCAATGTATTTAG-CCGAAGCTATCTCAGT
* *
43364672 CTCGTACACTTAGTGCCAATATATTTAGCCGAAGCTATCTCAGT
1 CTCGCACACTTAGTGCCAATGTATTTAGCCGAAGCTATCTCAGT
43364716 CTCGCACACTTAGTGCCAATGTAT
1 CTCGCACACTTAGTGCCAATGTAT
43364740 AATATATATA
Statistics
Matches: 166, Mismatches: 27, Indels: 25
0.76 0.12 0.11
Matches are distributed among these distances:
42 4 0.02
43 62 0.37
44 29 0.17
45 1 0.01
46 2 0.01
47 17 0.10
48 42 0.25
49 1 0.01
50 8 0.05
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (44 bp):
CTCGCACACTTAGTGCCAATGTATTTAGCCGAAGCTATCTCAGT
Found at i:43382607 original size:96 final size:96
Alignment explanation
Indices: 43382369--43382673 Score: 501
Period size: 96 Copynumber: 3.2 Consensus size: 96
43382359 CCCTTCGGGA
* * * * *
43382369 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
43382432 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
43382463 CTCATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
43382526 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
43382557 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
43382622 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
43382653 CTTATCACATATATATACACT
1 CTTATCACATATATATACACT
43382674 CACATCACAA
Statistics
Matches: 194, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.01
94 89 0.46
96 104 0.54
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:43382625 original size:143 final size:141
Alignment explanation
Indices: 43382369--43382667 Score: 472
Period size: 143 Copynumber: 2.1 Consensus size: 141
43382359 CCCTTCGGGA
* * * * *
43382369 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
43382434 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
*
43382499 GGCTATTAGGC
131 GGCCATTAGGC
* * *
43382510 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCAC--ATATATAC
* * *
43382575 ACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
43382640 TCGGCCATTAGGC
129 TCGGCCATTAGGC
43382653 CTTATCACATATATA
1 CTTATCACATATATA
43382668 TACACTCACA
Statistics
Matches: 144, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
141 47 0.33
143 97 0.67
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:43382678 original size:47 final size:47
Alignment explanation
Indices: 43382369--43382667 Score: 472
Period size: 47 Copynumber: 6.3 Consensus size: 47
43382359 CCCTTCGGGA
* * * * * *
43382369 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43382416 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43382463 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43382510 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
43382557 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43382606 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
43382653 CTTATCACATATATA
1 CTTATCACATATATA
43382668 TACACTCACA
Statistics
Matches: 232, Mismatches: 18, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 187 0.81
49 45 0.19
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:43388467 original size:105 final size:105
Alignment explanation
Indices: 43388280--43388490 Score: 386
Period size: 105 Copynumber: 2.0 Consensus size: 105
43388270 ATATAAGGGC
* *
43388280 ACACGGCCAAGGCAAATGCCCGTGCCTCTGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
1 ACACAGCCAAGGCAAATGCCCGTGCCTCCGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
*
43388345 TGTCATAGCCCGTGTGGCCAATTCGAAACTAAAGTACATG
66 TGTCATAGCCCGTGTGGCCAATACGAAACTAAAGTACATG
*
43388385 ACACAGCCAAGGCAAATGCCTGTGCCTCCGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
1 ACACAGCCAAGGCAAATGCCCGTGCCTCCGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
43388450 TGTCATAGCCCGTGTGGCCAATACGAAACTAAAGTACATG
66 TGTCATAGCCCGTGTGGCCAATACGAAACTAAAGTACATG
43388490 A
1 A
43388491 TGCAGGGGAC
Statistics
Matches: 102, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
105 102 1.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.19
Consensus pattern (105 bp):
ACACAGCCAAGGCAAATGCCCGTGCCTCCGGGCCGTGTCCCTCACACAGTTGAGACACATGGCTG
TGTCATAGCCCGTGTGGCCAATACGAAACTAAAGTACATG
Found at i:43390076 original size:28 final size:28
Alignment explanation
Indices: 43390042--43390103 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
43390032 CCTCGCACGG
* * *
43390042 TAAGTGCTATTCTAGATGTTTTGCACAA
1 TAAGTGCCATCCTAGATGCTTTGCACAA
* *
43390070 TAAGTGCCATCCTCGATGCTTTGCACAC
1 TAAGTGCCATCCTAGATGCTTTGCACAA
43390098 TAAGTG
1 TAAGTG
43390104 TCATTTATAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (28 bp):
TAAGTGCCATCCTAGATGCTTTGCACAA
Found at i:43394021 original size:43 final size:43
Alignment explanation
Indices: 43393973--43394068 Score: 104
Period size: 43 Copynumber: 2.2 Consensus size: 43
43393963 TCCTAGATAT
** * *
43393973 GGTCTTACATGTTATCAC-ATATCGATGCCACTGTCCCACACAG
1 GGTCTTACATGAAATCACAATA-CAATGCCAATGTCCCACACAG
* * * *
43394016 GGTCTTACACGAAATCACAATACAATGCCAATGTCCTAGACAT
1 GGTCTTACATGAAATCACAATACAATGCCAATGTCCCACACAG
43394059 GGTCTTACAT
1 GGTCTTACAT
43394069 TGACTCTCTT
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
43 40 0.93
44 3 0.07
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGAAATCACAATACAATGCCAATGTCCCACACAG
Found at i:43395617 original size:30 final size:31
Alignment explanation
Indices: 43395562--43395623 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
43395552 CTTTTCACAC
43395562 TTCATATTTCATAACACTGGGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
**
43395593 TTCATATTTCATATTACT-GGCCGAAGCCTT
1 TTCATATTTCATAACACTGGGCCGAAGCCTT
43395623 T
1 T
43395624 ACTGTGAACG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (31 bp):
TTCATATTTCATAACACTGGGCCGAAGCCTT
Found at i:43395859 original size:25 final size:24
Alignment explanation
Indices: 43395817--43395888 Score: 85
Period size: 25 Copynumber: 2.9 Consensus size: 24
43395807 GCTTTATCAT
*
43395817 ATAACTGGAGGCCT-AGCCTCTTCTA-
1 ATAACTGG-GGCATAAGCC-CTT-TAC
43395842 ATAACTGGGGCATAAGCCCTTTATC
1 ATAACTGGGGCATAAGCCCTTTA-C
43395867 ATAACTGGGGCATAAGCCCTTT
1 ATAACTGGGGCATAAGCCCTTT
43395889 TACACTTCCT
Statistics
Matches: 43, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
23 2 0.05
24 7 0.16
25 34 0.79
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTAC
Found at i:43395964 original size:20 final size:20
Alignment explanation
Indices: 43395939--43396005 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
43395929 TTATGAATAC
43395939 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
43395959 ATCATGTGCATAGCATACAT
1 ATCATGTGCATATCATACAT
* *
43395979 GTCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
*
43395999 ACCATGT
1 ATCATGT
43396006 TTACTAAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.31, C:0.21, G:0.15, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:43410006 original size:12 final size:12
Alignment explanation
Indices: 43409989--43410018 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
43409979 ACAAAACCAA
43409989 TTTTTTCGAACT
1 TTTTTTCGAACT
*
43410001 TTTTTTTGAACT
1 TTTTTTCGAACT
43410013 TTTTTT
1 TTTTTT
43410019 AAAAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.13, C:0.10, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTTTTCGAACT
Found at i:43433423 original size:21 final size:21
Alignment explanation
Indices: 43433399--43433438 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
43433389 CATATGCAAG
*
43433399 GAAGCTTCCTGGAAATTTCTT
1 GAAGATTCCTGGAAATTTCTT
* *
43433420 GAAGATTTCTGGAATTTTC
1 GAAGATTCCTGGAAATTTC
43433439 AGCTCATTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (21 bp):
GAAGATTCCTGGAAATTTCTT
Found at i:43434723 original size:43 final size:43
Alignment explanation
Indices: 43434672--43434826 Score: 181
Period size: 43 Copynumber: 3.7 Consensus size: 43
43434662 TGTGTTCTCA
*
43434672 TGTAAGACCACGTCTGGGACGTTGGCATCGATATGTGATTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACG
* * * * *
43434715 TGTTAGACCATGTCTGGGACATCGGCATCG-TATTTGATT-TG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACG
* * *
43434756 TGTAAGACC-CTATCTGGGACAATGGCATCGATATGTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATGTGATTACG
**
43434799 TGTAAGACCACGTCTGGGATGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
43434827 TGTATGATAT
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
41 25 0.28
42 16 0.18
43 48 0.53
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATGTGATTACG
Found at i:43437236 original size:21 final size:21
Alignment explanation
Indices: 43437212--43437251 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
43437202 GGTGATGATG
*
43437212 CTATCTGCGTGTTTGATAATA
1 CTATCTGCATGTTTGATAATA
43437233 CTATCTGCATGTTTGATAA
1 CTATCTGCATGTTTGATAA
43437252 GCTATCTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.15, G:0.17, T:0.42
Consensus pattern (21 bp):
CTATCTGCATGTTTGATAATA
Found at i:43462863 original size:29 final size:31
Alignment explanation
Indices: 43462821--43462878 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
43462811 CCTTAACTCT
43462821 AACTTTTGAAATA-TTACAATTTTGCCCCTA
1 AACTTTTGAAATATTTACAATTTTGCCCCTA
* * *
43462851 AACTTTTG-CATATTTACACTTTTTCCCC
1 AACTTTTGAAATATTTACAATTTTGCCCC
43462879 AAAGCTAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 3 0.12
30 21 0.88
ACGTcount: A:0.28, C:0.24, G:0.05, T:0.43
Consensus pattern (31 bp):
AACTTTTGAAATATTTACAATTTTGCCCCTA
Found at i:43479214 original size:17 final size:17
Alignment explanation
Indices: 43479192--43479226 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
43479182 CTCAGGCTGA
*
43479192 ATCAGAACTGATGCTTC
1 ATCAGAACCGATGCTTC
43479209 ATCAGAACCGATGCTTC
1 ATCAGAACCGATGCTTC
43479226 A
1 A
43479227 GTTAACAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (17 bp):
ATCAGAACCGATGCTTC
Found at i:43482884 original size:47 final size:43
Alignment explanation
Indices: 43482822--43482971 Score: 165
Period size: 43 Copynumber: 3.4 Consensus size: 43
43482812 CTCAATCACT
* * *
43482822 CACACTAAGTGCCAATATATGTACATAGCCGAAGTTAACTGATCTTG
1 CACACTTAGTGCCAATATAT-T---TAGCCGAAGCTATCTGATCTTG
* * *
43482869 CACACTTAGTGCCAATGTATTTAGCCGAAGCTATCTGGTCTCG
1 CACACTTAGTGCCAATATATTTAGCCGAAGCTATCTGATCTTG
* * *
43482912 TACACTTAGTGCCAACATATTTAGCCGAAGCTATCTCAGTCTTG
1 CACACTTAGTGCCAATATATTTAGCCGAAGCTATCTGA-TCTTG
*
43482956 CACACCTAGTGCCAAT
1 CACACTTAGTGCCAAT
43482972 GTACAATATA
Statistics
Matches: 87, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
43 51 0.59
44 17 0.20
46 1 0.01
47 18 0.21
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (43 bp):
CACACTTAGTGCCAATATATTTAGCCGAAGCTATCTGATCTTG
Found at i:43482917 original size:43 final size:43
Alignment explanation
Indices: 43482847--43482974 Score: 166
Period size: 43 Copynumber: 3.0 Consensus size: 43
43482837 TATATGTACA
* * *
43482847 TAGCCGAAGTTAACTGATCTTGCACACTTAGTGCCAATGTATT
1 TAGCCGAAGCTATCTGGTCTTGCACACTTAGTGCCAATGTATT
* * **
43482890 TAGCCGAAGCTATCTGGTCTCGTACACTTAGTGCCAACATATT
1 TAGCCGAAGCTATCTGGTCTTGCACACTTAGTGCCAATGTATT
* *
43482933 TAGCCGAAGCTATCTCAGTCTTGCACACCTAGTGCCAATGTA
1 TAGCCGAAGCTATCT-GGTCTTGCACACTTAGTGCCAATGTA
43482975 CAATATATAT
Statistics
Matches: 71, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
43 51 0.72
44 20 0.28
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (43 bp):
TAGCCGAAGCTATCTGGTCTTGCACACTTAGTGCCAATGTATT
Found at i:43488820 original size:43 final size:41
Alignment explanation
Indices: 43488751--43488870 Score: 134
Period size: 43 Copynumber: 2.9 Consensus size: 41
43488741 CTCGGATAAT
* *
43488751 CACGCATATCATA-CAATGCCAATGTCCTAGACGTGGTCTTA
1 CACGCA-ATCATATCGATGCCAATGTCCCAGACGTGGTCTTA
* * *
43488792 CATGCAATCACATATTGATGCCAATGTCCCAGACATGGTCTTA
1 CACGCAAT--CATATCGATGCCAATGTCCCAGACGTGGTCTTA
* * *
43488835 CACGTAATCATATCGATGCCAAAGTCCCAGATGTGG
1 CACGCAATCATATCGATGCCAATGTCCCAGACGTGG
43488871 CCTTGGATGA
Statistics
Matches: 65, Mismatches: 11, Indels: 6
0.79 0.13 0.07
Matches are distributed among these distances:
40 2 0.03
41 29 0.45
42 4 0.06
43 30 0.46
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (41 bp):
CACGCAATCATATCGATGCCAATGTCCCAGACGTGGTCTTA
Found at i:43492342 original size:28 final size:28
Alignment explanation
Indices: 43492310--43492367 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
43492300 TATAGTCACC
43492310 TTATTGAGTTGTCTATAATCGATACACA
1 TTATTGAGTTGTCTATAATCGATACACA
*
43492338 TTATTGAGTTGTCTATAATCGTTACACA
1 TTATTGAGTTGTCTATAATCGATACACA
43492366 TT
1 TT
43492368 CTCATAGTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (28 bp):
TTATTGAGTTGTCTATAATCGATACACA
Found at i:43496599 original size:43 final size:43
Alignment explanation
Indices: 43496532--43496649 Score: 123
Period size: 43 Copynumber: 2.7 Consensus size: 43
43496522 GCATATTGTA
* * * * *
43496532 CAATGCCAGCATCCTAGACGTGGTCTTACATGCAATCACATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGCAATCACATAT
** *
43496575 TGATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATAT
1 CAATGCCAAC-GTCCCAGACATGGTCTTACACGCAATCACATAT
*
43496618 CAATGCCAACGTCCCAGACGTCGG-CTTACACG
1 CAATGCCAACGTCCCAGACAT-GGTCTTACACG
43496650 AGAACACATA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 1 0.02
43 56 0.92
44 4 0.07
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACATGGTCTTACACGCAATCACATAT
Found at i:43498263 original size:43 final size:43
Alignment explanation
Indices: 43498153--43498299 Score: 135
Period size: 43 Copynumber: 3.4 Consensus size: 43
43498143 ATGTCAACAT
* *
43498153 CCCAGACGTGGCCTTACATGT-AATCAAATATCGATGCC-ACAG-C
1 CCCA-ACGTGGTCTTACACGTAAATCAAATAT-GATGCCAAC-GTC
43498196 CCCAGACAG-GGTCTTACACG-AAATCAAATATGATGCCAACGTC
1 CCCA-AC-GTGGTCTTACACGTAAATCAAATATGATGCCAACGTC
* *
43498239 CCTAACGTGGTCTTACACGTAAATCATAAGT-TGATGCCAATGTC
1 CCCAACGTGGTCTTACACGTAAATCA-AA-TATGATGCCAACGTC
**
43498283 CAGAACGTGGTCTTACA
1 CCCAACGTGGTCTTACA
43498300 TGAAAACACA
Statistics
Matches: 90, Mismatches: 6, Indels: 15
0.81 0.05 0.14
Matches are distributed among these distances:
41 1 0.01
42 20 0.22
43 38 0.42
44 30 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (43 bp):
CCCAACGTGGTCTTACACGTAAATCAAATATGATGCCAACGTC
Found at i:43502666 original size:27 final size:26
Alignment explanation
Indices: 43502629--43502740 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
43502619 AGCATGGCTG
* *
43502629 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
43502655 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
43502683 CCAGAACAGATATATATGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
43502710 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
43502737 CCAG
1 CCAG
43502741 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:43502720 original size:54 final size:54
Alignment explanation
Indices: 43502629--43502740 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
43502619 AGCATGGCTG
* *
43502629 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
43502683 CCAGAACAGATATATATGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGATA-ATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
43502737 CCAG
1 CCAG
43502741 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (54 bp):
CCAGAACAGATAATATGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:43519568 original size:28 final size:29
Alignment explanation
Indices: 43519533--43519598 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
43519523 TGAATGCGAC
43519533 TGGGCCTAACGGG-CATATA-AATGTGATT
1 TGGGCCTAACGGGCCATATACAA-GTGATT
* *
43519561 TGGGCCTAATGGGCCATATACAAGTGGTT
1 TGGGCCTAACGGGCCATATACAAGTGATT
*
43519590 TAGGCCTAA
1 TGGGCCTAA
43519599 TAGGTTATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 12 0.36
29 19 0.58
30 2 0.06
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (29 bp):
TGGGCCTAACGGGCCATATACAAGTGATT
Found at i:43523854 original size:16 final size:15
Alignment explanation
Indices: 43523811--43523854 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 15
43523801 AGTAGATCGG
43523811 CAAAAGCCGAAATGC
1 CAAAAGCCGAAATGC
*
43523826 CAAAATGCTGAAATGC
1 CAAAA-GCCGAAATGC
43523842 CGAAAAGCCGAAA
1 C-AAAAGCCGAAA
43523855 GTTTGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 5 0.20
16 16 0.64
17 4 0.16
ACGTcount: A:0.48, C:0.23, G:0.20, T:0.09
Consensus pattern (15 bp):
CAAAAGCCGAAATGC
Found at i:43524132 original size:58 final size:57
Alignment explanation
Indices: 43524060--43524170 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
43524050 TGAATGTGAC
* *
43524060 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAGGTGGTT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGGTT
* * * *
43524118 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGTCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
43524171 ATGTGGATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGGTT
Found at i:43524157 original size:28 final size:28
Alignment explanation
Indices: 43524047--43524158 Score: 127
Period size: 29 Copynumber: 3.9 Consensus size: 28
43524037 GTGAGCATGA
* *
43524047 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
43524075 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
43524104 ATAT-ACAGGTGGTTTGGGCCTAATGGGCC
1 ATATGA-ATGT-GATTGGGCCTAATGGGCC
* *
43524133 ATATGAATATGATTGGGCTTAATGGG
1 ATATGAATGTGATTGGGCCTAATGGG
43524159 TCAGATACAG
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
28 26 0.37
29 43 0.61
30 2 0.03
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:43527167 original size:27 final size:27
Alignment explanation
Indices: 43527137--43527200 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 27
43527127 ATTTACTAAA
*
43527137 ATACCCCTAAGTATG-ACAATTACCATT
1 ATACCCCTAAGTAAGCA-AATTACCATT
*
43527164 ATACCCTTAAGTAAGCGAAATTACCATT
1 ATACCCCTAAGTAAGC-AAATTACCATT
43527192 ATACCCCTA
1 ATACCCCTA
43527201 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 13 0.41
28 18 0.56
29 1 0.03
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.28
Consensus pattern (27 bp):
ATACCCCTAAGTAAGCAAATTACCATT
Found at i:43535169 original size:49 final size:49
Alignment explanation
Indices: 43535109--43535333 Score: 279
Period size: 49 Copynumber: 4.5 Consensus size: 49
43535099 CTAATACGCA
* * * *
43535109 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* *
43535158 TAGTAGACTGCACTTAGTACTACACACGTGACCAATTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
** * *
43535207 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
43535257 TAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAATTATCCGGTACACG
*
43535308 TAGTAGCTTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
43535334 TGCGACCTCA
Statistics
Matches: 154, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
49 75 0.49
50 44 0.29
51 34 0.22
52 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:43535281 original size:99 final size:100
Alignment explanation
Indices: 43535107--43535340 Score: 303
Period size: 101 Copynumber: 2.4 Consensus size: 100
43535097 ATCTAATACG
* * **
43535107 CATAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCAGTACACGTAGTAGACTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCAGTACACGTAGTAGACTGCACT
*
43535172 TAGTACTACACACGTGA-C-CAATTATCTGGTACA
66 TAGTACTACACACGTGATCACAATTATCGGGTACA
* * * *
43535205 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-CTGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AACCATCCAG-TACACGTAGTAGACTGCA
* * *
43535269 CTTAGTACTACACACGTGATCACAGTTTTCGGGTACG
64 CTTAGTACTACACACGTGATCACAATTATCGGGTACA
* *
43535306 CATAGTAGCTTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC
43535341 TCACAGTAGA
Statistics
Matches: 116, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
98 33 0.28
99 40 0.34
100 1 0.01
101 42 0.36
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAACCATCCAGTACACGTAGTAGACTGCACT
TAGTACTACACACGTGATCACAATTATCGGGTACA
Found at i:43535411 original size:23 final size:23
Alignment explanation
Indices: 43535384--43535429 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
43535374 AAGGTTTAAT
43535384 CGGGAAATTCCTCACTTTTCAAC
1 CGGGAAATTCCTCACTTTTCAAC
*
43535407 CGGGAAATTTCTCACTTTTCAAC
1 CGGGAAATTCCTCACTTTTCAAC
43535430 ATTTTACTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.33
Consensus pattern (23 bp):
CGGGAAATTCCTCACTTTTCAAC
Found at i:43537947 original size:19 final size:19
Alignment explanation
Indices: 43537923--43537970 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
43537913 ATATTTGGGC
*
43537923 TTAATGGGTCGAAAATAGG
1 TTAATGGGCCGAAAATAGG
43537942 TTAATGGGCCGAAAATAGG
1 TTAATGGGCCGAAAATAGG
43537961 TTAATGGGCC
1 TTAATGGGCC
43537971 AACGGGCCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.33, C:0.10, G:0.31, T:0.25
Consensus pattern (19 bp):
TTAATGGGCCGAAAATAGG
Found at i:43538091 original size:27 final size:28
Alignment explanation
Indices: 43538069--43538134 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
43538059 ATTTACTAAA
*
43538069 ATACCCCTAGGTATG-ACAATTACCATT
1 ATACCCCTAGGTATGCAAAATTACCATT
*
43538096 ATACCCCTAAGTATGCAAAATTACCATT
1 ATACCCCTAGGTATGCAAAATTACCATT
43538124 ATACCCCTAGG
1 ATACCCCTAGG
43538135 GTTAATTTTG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
27 14 0.40
28 21 0.60
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (28 bp):
ATACCCCTAGGTATGCAAAATTACCATT
Found at i:43538307 original size:27 final size:26
Alignment explanation
Indices: 43538235--43538350 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 26
43538225 ATGGAGGAAG
* * *
43538235 TGTTGTGGTGGCTATGCTACAATTATC
1 TGTTCTGGTGACTATGCCACAA-TATC
* *
43538262 TGTTTCTAGTGGCTATGCCACAAATATC
1 TG-TTCTGGTGACTATGCCAC-AATATC
*
43538290 TGTTCTGGTGACTCTGCCACAATATC
1 TGTTCTGGTGACTATGCCACAATATC
* *
43538316 TGTATCTGGTGACTCTGTCACAATATC
1 TGT-TCTGGTGACTATGCCACAATATC
43538343 TGTTCTGG
1 TGTTCTGG
43538351 CAGCCATGCT
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
26 14 0.18
27 42 0.53
28 21 0.27
29 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.38
Consensus pattern (26 bp):
TGTTCTGGTGACTATGCCACAATATC
Found at i:43540404 original size:94 final size:96
Alignment explanation
Indices: 43540275--43540510 Score: 293
Period size: 94 Copynumber: 2.5 Consensus size: 96
43540265 CAGTGCAGGT
* *
43540275 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ACA-AGAGCCAGTGT
1 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGACAGAGAGCCAGTCT
* * *
43540338 AAGACATGTCTAGGACATGCGCCGGCCTTGA
66 AAGACATGTCTAGGACATGCACCAGCCTCGA
* * * * *
43540369 GATATGTTTACTAGTGTAAGACATGTCTGGGACATGCATCAG---CTTTGAGATGAGAGCCATTC
1 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGACA-GAGAGCCAGTC
*
43540431 TAAGACATGTCTGGGACATGCACCAGCCTCGA
65 TAAGACATGTCTAGGACATGCACCAGCCTCGA
* * * *
43540463 GATATGTGTGCTACTATAAAACATGTCTAGGACATGCATCAGCCACAT
1 GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACAT
43540511 CATGAAATGG
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
91 3 0.03
92 2 0.02
94 111 0.94
97 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (96 bp):
GATATGTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCACATTGACAGAGAGCCAGTCT
AAGACATGTCTAGGACATGCACCAGCCTCGA
Found at i:43540417 original size:48 final size:47
Alignment explanation
Indices: 43540333--43540506 Score: 156
Period size: 48 Copynumber: 3.7 Consensus size: 47
43540323 TACAAGAGCC
* *
43540333 AGTGTAAGACATGTCTAGGACATGCGCCGGCCTTGAGATATGTTTACT
1 AGTGTAAGACATGTCTAGGACATGCACCAGCCTTGAGATATG-TTACT
* * * *
43540381 AGTGTAAGACATGTCTGGGACATGCATCAGCTTTGAGATGA-G--AGCC
1 AGTGTAAGACATGTCTAGGACATGCACCAGCCTTGAGAT-ATGTTA-CT
* * * * *
43540427 ATTCTAAGACATGTCTGGGACATGCACCAGCCTCGAGATATGTGTGCT
1 AGTGTAAGACATGTCTAGGACATGCACCAGCCTTGAGATATGT-TACT
* * * *
43540475 ACTATAAAACATGTCTAGGACATGCATCAGCC
1 AGTGTAAGACATGTCTAGGACATGCACCAGCC
43540507 ACATCATGAA
Statistics
Matches: 102, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
45 2 0.02
46 36 0.35
48 63 0.62
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (47 bp):
AGTGTAAGACATGTCTAGGACATGCACCAGCCTTGAGATATGTTACT
Found at i:43543321 original size:50 final size:49
Alignment explanation
Indices: 43543200--43543375 Score: 235
Period size: 50 Copynumber: 3.5 Consensus size: 49
43543190 CTAGGTGGCA
* * * * *
43543200 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* *
43543251 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* * *
43543301 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
43543350 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
43543376 TGCATACCAA
Statistics
Matches: 112, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
49 32 0.29
50 46 0.41
51 34 0.30
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:43554553 original size:6 final size:6
Alignment explanation
Indices: 43554542--43554573 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
43554532 ACACCGTAGG
43554542 GTAACA GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GTAACA GT
43554574 CATAGTCAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:43555494 original size:16 final size:16
Alignment explanation
Indices: 43555473--43555505 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
43555463 CGTTCCTTTC
*
43555473 TGTTTTTTTTCTTTTA
1 TGTTTTATTTCTTTTA
43555489 TGTTTTATTTCTTTTA
1 TGTTTTATTTCTTTTA
43555505 T
1 T
43555506 TTTCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.79
Consensus pattern (16 bp):
TGTTTTATTTCTTTTA
Found at i:43555554 original size:18 final size:17
Alignment explanation
Indices: 43555527--43555563 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
43555517 ATTCTTTATT
*
43555527 TTATTAATATATTATAA
1 TTATTAATATAATATAA
43555544 TTATATAATATAATATAA
1 TTAT-TAATATAATATAA
43555562 TT
1 TT
43555564 TACTTTATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTATTAATATAATATAA
Found at i:43588101 original size:27 final size:26
Alignment explanation
Indices: 43588041--43588151 Score: 132
Period size: 27 Copynumber: 4.2 Consensus size: 26
43588031 AGCATGGCTG
* * *
43588041 CCAGAATAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
43588067 CCAGAACAGATAATCGTGGCAGACCCA
1 CCAGAACAGATAAT-GTGGCAGAGCCA
*
43588094 CCAAAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
43588121 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
43588148 CCAG
1 CCAG
43588152 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
26 14 0.19
27 57 0.78
28 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:43594699 original size:27 final size:26
Alignment explanation
Indices: 43594643--43594753 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
43594633 AGCATGGCTT
* * *
43594643 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAATAGATAATGTGGCAGAGCCA
43594669 CCAGAATAGATAATCGTGGCAGAGCCA
1 CCAGAATAGATAAT-GTGGCAGAGCCA
43594696 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAATAGATA-ATGTGGCAGAGCCA
*
43594723 CCAG-ATCAGATAATTGTGGCATAGCCA
1 CCAGAAT-AGATAA-TGTGGCAGAGCCA
43594750 CCAG
1 CCAG
43594754 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 4, Indels: 7
0.88 0.05 0.08
Matches are distributed among these distances:
26 16 0.21
27 59 0.77
28 2 0.03
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAATAGATAATGTGGCAGAGCCA
Found at i:43596198 original size:24 final size:24
Alignment explanation
Indices: 43596163--43596215 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
43596153 CCAACACTAT
43596163 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
* *
43596187 TCTCCCTTATCATCTCCTAAATCC
1 TCTCCCTAATCAGCTCCTAAATCC
43596211 TCTCC
1 TCTCC
43596216 TCAGACACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.21, C:0.43, G:0.02, T:0.34
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCTAAATCC
Found at i:43597233 original size:12 final size:12
Alignment explanation
Indices: 43597206--43597246 Score: 64
Period size: 12 Copynumber: 3.3 Consensus size: 12
43597196 CAAATAGATA
*
43597206 ATTTCTCATTTTC
1 ATTTCT-ATTTCC
43597219 ATTTCTATTTCC
1 ATTTCTATTTCC
43597231 ATTTCTATTTCC
1 ATTTCTATTTCC
43597243 ATTT
1 ATTT
43597247 TGAGAAAACC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
12 21 0.78
13 6 0.22
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (12 bp):
ATTTCTATTTCC
Found at i:43597240 original size:18 final size:19
Alignment explanation
Indices: 43597206--43597246 Score: 50
Period size: 18 Copynumber: 2.2 Consensus size: 19
43597196 CAAATAGATA
*
43597206 ATTTCTCATTTTCATTTCT
1 ATTTCTCATTTTCATTTCC
43597225 ATTTC-CA-TTTCTATTTCC
1 ATTTCTCATTTTC-ATTTCC
43597243 ATTT
1 ATTT
43597247 TGAGAAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTCTCATTTTCATTTCC
Found at i:43604676 original size:43 final size:43
Alignment explanation
Indices: 43604621--43604776 Score: 222
Period size: 43 Copynumber: 3.6 Consensus size: 43
43604611 TTATTTTAAA
* *
43604621 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTTTAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCAC
* * * *
43604664 GAACGCCGCTAAAGACCATGACCTTTAGCAGCGCTTTTCCCGC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCAC
*
43604707 AAACGCCGCTAAAGACCATGACCTTTAGCGGCACTTTTCTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCAC
* * *
43604750 AAACGCCGCTAAAAATCATGAACTTTA
1 AAACGCCGCTAAAGACCATGACCTTTA
43604777 AAAAAATTAT
Statistics
Matches: 99, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 99 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCTCAC
Found at i:43607909 original size:23 final size:23
Alignment explanation
Indices: 43607882--43607927 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
43607872 TTTTTAAATG
43607882 CCACCTAATCCGATTTAACAGAT
1 CCACCTAATCCGATTTAACAGAT
43607905 CCACCTAATCCGATTTAACAGAT
1 CCACCTAATCCGATTTAACAGAT
43607928 GTTCTCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.30, G:0.09, T:0.26
Consensus pattern (23 bp):
CCACCTAATCCGATTTAACAGAT
Done.