Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 141 of 290
Found at i:44719861 original size:6 final size:6
Alignment explanation
Indices: 44719852--44719911 Score: 70
Period size: 6 Copynumber: 10.3 Consensus size: 6
44719842 TATCTTTAGG
** *
44719852 TTTATT TTTATT TTTATT TTTATT TTTA-T TTTA-T TTTCCT TTTCTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
*
44719898 TTTATG TTTATT TT
1 TTTATT TTTATT TT
44719912 GTCTTTATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
5 9 0.19
6 39 0.81
ACGTcount: A:0.13, C:0.05, G:0.02, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:44719867 original size:18 final size:18
Alignment explanation
Indices: 44719840--44719883 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
44719830 CATTAGTCCA
*
44719840 TTTATCTTTAGGTTTATT
1 TTTATTTTTAGGTTTATT
**
44719858 TTTATTTTTATTTTTATT
1 TTTATTTTTAGGTTTATT
44719876 TTTATTTT
1 TTTATTTT
44719884 ATTTTCCTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (18 bp):
TTTATTTTTAGGTTTATT
Found at i:44719887 original size:23 final size:23
Alignment explanation
Indices: 44719853--44719923 Score: 72
Period size: 23 Copynumber: 3.1 Consensus size: 23
44719843 ATCTTTAGGT
44719853 TTATTTTTATTTTTATTTTTATTT
1 TTATTTTTA-TTTTATTTTTATTT
** *
44719877 TTA-TTTTATTTTCCTTTTCTTT
1 TTATTTTTATTTTATTTTTATTT
* * *
44719899 TTATGTTTATTTTGTCTTTATTT
1 TTATTTTTATTTTATTTTTATTT
44719922 TT
1 TT
44719924 TGAATTCTAT
Statistics
Matches: 38, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
22 14 0.37
23 21 0.55
24 3 0.08
ACGTcount: A:0.13, C:0.06, G:0.03, T:0.79
Consensus pattern (23 bp):
TTATTTTTATTTTATTTTTATTT
Found at i:44719919 original size:34 final size:34
Alignment explanation
Indices: 44719857--44719922 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
44719847 TTAGGTTTAT
* *
44719857 TTTTATTTTTATTTTTATTTTTATTTTATTTTCC
1 TTTTATTTTTATGTTTATTTTTACTTTATTTTCC
*
44719891 TTTTCTTTTTATGTTTATTTTGT-CTTTATTTT
1 TTTTATTTTTATGTTTATTTT-TACTTTATTTT
44719923 TTGAATTCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 27 0.96
35 1 0.04
ACGTcount: A:0.12, C:0.06, G:0.03, T:0.79
Consensus pattern (34 bp):
TTTTATTTTTATGTTTATTTTTACTTTATTTTCC
Found at i:44721171 original size:21 final size:20
Alignment explanation
Indices: 44721146--44721205 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 20
44721136 CTTTTTGATG
44721146 GTGTTTGTTTT-GTTTCTGTT
1 GTGTTTGTTTTAGTTT-TGTT
*
44721166 GTTGTTTTTTTTAGTTTTGTT
1 G-TGTTTGTTTTAGTTTTGTT
*
44721187 GTG-TT-TTTTATTTTTGTT
1 GTGTTTGTTTTAGTTTTGTT
44721205 G
1 G
44721206 AGGTTTGTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
18 13 0.36
19 2 0.06
20 3 0.08
21 14 0.39
22 4 0.11
ACGTcount: A:0.03, C:0.02, G:0.22, T:0.73
Consensus pattern (20 bp):
GTGTTTGTTTTAGTTTTGTT
Found at i:44721185 original size:18 final size:18
Alignment explanation
Indices: 44721164--44721205 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
44721154 TTTGTTTCTG
*
44721164 TTGTTGTTTTTTTTAGTT
1 TTGTTGTGTTTTTTAGTT
*
44721182 TTGTTGTGTTTTTTATTT
1 TTGTTGTGTTTTTTAGTT
44721200 TTGTTG
1 TTGTTG
44721206 AGGTTTGTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.00, G:0.19, T:0.76
Consensus pattern (18 bp):
TTGTTGTGTTTTTTAGTT
Found at i:44721211 original size:19 final size:18
Alignment explanation
Indices: 44721172--44721211 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
44721162 TGTTGTTGTT
*
44721172 TTTTTTAGTTTTGTTGTG
1 TTTTTTAGTTTTGTTGGG
*
44721190 TTTTTTATTTTTGTTGAGG
1 TTTTTTAGTTTTGTTG-GG
44721209 TTT
1 TTT
44721212 GTAGTTGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.07, C:0.00, G:0.20, T:0.72
Consensus pattern (18 bp):
TTTTTTAGTTTTGTTGGG
Found at i:44721276 original size:22 final size:21
Alignment explanation
Indices: 44721251--44721309 Score: 79
Period size: 19 Copynumber: 2.9 Consensus size: 21
44721241 AGTGTGTTGT
*
44721251 GTGTTTGTTTTGTTTTTTTTGA
1 GTGTTTGTTTTGTTGTTTTT-A
44721273 GTGTTTG-TTTGTTGTTTTTA
1 GTGTTTGTTTTGTTGTTTTTA
44721293 GTG--TGTTTTGTTGTTTT
1 GTGTTTGTTTTGTTGTTTT
44721310 GTTTTTGTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 2 0.06
19 11 0.31
20 4 0.11
21 11 0.31
22 7 0.20
ACGTcount: A:0.03, C:0.00, G:0.25, T:0.71
Consensus pattern (21 bp):
GTGTTTGTTTTGTTGTTTTTA
Found at i:44721283 original size:26 final size:25
Alignment explanation
Indices: 44721252--44721315 Score: 71
Period size: 24 Copynumber: 2.6 Consensus size: 25
44721242 GTGTGTTGTG
**
44721252 TGTTTGTTTTGTTTTTTTTGAGTGTT
1 TGTTTGTTTTGTTTTTAGTGAGT-TT
*
44721278 TGTTTG--TTGTTTTTAGTGTGTTT
1 TGTTTGTTTTGTTTTTAGTGAGTTT
44721301 TG-TTGTTTTGTTTTT
1 TGTTTGTTTTGTTTTT
44721316 GTTTTTTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 3 0.09
23 4 0.12
24 20 0.61
26 6 0.18
ACGTcount: A:0.03, C:0.00, G:0.23, T:0.73
Consensus pattern (25 bp):
TGTTTGTTTTGTTTTTAGTGAGTTT
Found at i:44721309 original size:18 final size:19
Alignment explanation
Indices: 44721256--44721310 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
44721246 GTTGTGTGTT
*
44721256 TGTTTTGTTTTTTTTGAGTG
1 TGTTTTG-TTGTTTTGAGTG
* *
44721276 TTTGTTTGTTGTTTTTAGTG
1 TGT-TTTGTTGTTTTGAGTG
44721296 TGTTTTGTTGTTTTG
1 TGTTTTGTTGTTTTG
44721311 TTTTTGTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
19 11 0.38
20 14 0.48
21 4 0.14
ACGTcount: A:0.04, C:0.00, G:0.25, T:0.71
Consensus pattern (19 bp):
TGTTTTGTTGTTTTGAGTG
Found at i:44721467 original size:3 final size:3
Alignment explanation
Indices: 44721451--44721497 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
44721441 GTTAGTTTTA
44721451 GTT GTT -TT -TT GTT GTT GTT G-T GTT G-T GTTT GTT GTT -TT GTT
1 GTT GTT GTT GTT GTT GTT GTT GTT GTT GTT G-TT GTT GTT GTT GTT
44721492 GTT GTT
1 GTT GTT
44721498 AATAATATTC
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
2 10 0.26
3 27 0.69
4 2 0.05
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (3 bp):
GTT
Found at i:44721483 original size:20 final size:20
Alignment explanation
Indices: 44721411--44721496 Score: 70
Period size: 20 Copynumber: 4.2 Consensus size: 20
44721401 TTTGAGTGGT
* *
44721411 TTGTGTTTATTGTGTTTTTTG
1 TTGTGTTTGTTGT-TTTGTTG
* *
44721432 TGGTGTGTAGTTAGTTTTAGTTG
1 TTGTGT-TTGTT-GTTTT-GTTG
44721455 TT-T-TTTGTTGTTGTTG-TG
1 TTGTGTTTGTTGTT-TTGTTG
44721473 TTGTGTTTGTTGTTTTGTTG
1 TTGTGTTTGTTGTTTTGTTG
44721493 TTGT
1 TTGT
44721497 TAATAATATT
Statistics
Matches: 52, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
18 4 0.08
19 8 0.15
20 21 0.40
21 6 0.12
22 7 0.13
23 6 0.12
ACGTcount: A:0.05, C:0.00, G:0.29, T:0.66
Consensus pattern (20 bp):
TTGTGTTTGTTGTTTTGTTG
Found at i:44721496 original size:14 final size:14
Alignment explanation
Indices: 44721451--44721497 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
44721441 GTTAGTTTTA
44721451 GTTGTT-TTTTGTT
1 GTTGTTGTTTTGTT
*
44721464 GTTGTTGTGTTG-T
1 GTTGTTGTTTTGTT
44721477 GTTTGTTGTTTTGTT
1 G-TTGTTGTTTTGTT
44721492 GTTGTT
1 GTTGTT
44721498 AATAATATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
13 8 0.28
14 19 0.66
15 2 0.07
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (14 bp):
GTTGTTGTTTTGTT
Found at i:44721681 original size:47 final size:47
Alignment explanation
Indices: 44721566--44722090 Score: 793
Period size: 46 Copynumber: 11.4 Consensus size: 47
44721556 CCCTTCGGGA
* * * * * * *
44721566 CTTATCACATTTATGCACTTTCACATCCATCA-GTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44721612 CCTGTCACATA-ATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44721658 CTTATCACATATATACACTTTCACA-TCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
44721703 CTTATTACATATATACACTTTCACATTCATCACACCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44721750 CTTATCACACATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44721796 CTTATCACACATATACACTTTCACATTCATCACATCGG-CATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44721842 CTTATCACATATATACACTTTCACATTCATCACATCGGCTAGTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44721889 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
44721936 CTTATCACATATATACACTTTCACATTCAT-ACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44721982 CTTATCACATATATACACTTTCACATTCATC-CATC-GCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
44722027 CTTATCACACATATACACTTTCACATTCATCACATC-G-CATTACGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
44722072 CTTATCACATATATACACT
1 CTTATCACATATATACACT
44722091 GTCTTGCTGA
Statistics
Matches: 446, Mismatches: 26, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
45 114 0.26
46 195 0.44
47 137 0.31
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:44721828 original size:93 final size:93
Alignment explanation
Indices: 44721566--44722090 Score: 805
Period size: 93 Copynumber: 5.7 Consensus size: 93
44721556 CCCTTCGGGA
* * * * * * * * *
44721566 CTTATCACATTTATGCACTTTCACATCCATCA-GTTGGCCACTCGGCCCTGTCACATA-ATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACAC
44721629 TTTCACATTCATCACATCGGCCATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
*
44721658 CTTATCACATATATACACTTTCACA-TCATCACATCGGCATTAGGCCTTATTACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
* *
44721722 TTCACATTCATCACACCGGCTATTAGGC
66 TTCACATTCATCACATCGGCCATTAGGC
* *
44721750 CTTATCACACATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACACATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
44721815 TTCACATTCATCACATCGG-CATTAGGC
66 TTCACATTCATCACATCGGCCATTAGGC
*
44721842 CTTATCACATATATACACTTTCACATTCATCACATCGGCTAGTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-ATTAGGCCTTATCACATATATACAC
*
44721907 TTTCACATTCATCACATCGGCTATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
44721936 CTTATCACATATATACACTTTCACATTCAT-ACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC-ATTAGGCCTTATCACATATATACAC
44722000 TTTCACATTCATC-CATC-GCCATTAGGC
65 TTTCACATTCATCACATCGGCCATTAGGC
* *
44722027 CTTATCACACATATACACTTTCACATTCATCACATC-GCATTACGCCTTATCACATATATACACT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
44722091 GTCTTGCTGA
Statistics
Matches: 402, Mismatches: 25, Indels: 14
0.91 0.06 0.03
Matches are distributed among these distances:
90 25 0.06
91 59 0.15
92 137 0.34
93 144 0.36
94 37 0.09
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (93 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACT
TTCACATTCATCACATCGGCCATTAGGC
Found at i:44729193 original size:27 final size:27
Alignment explanation
Indices: 44729132--44729197 Score: 71
Period size: 27 Copynumber: 2.4 Consensus size: 27
44729122 TAGTAATGCA
* *
44729132 GCAAAGCTACTAATAACAGTAAACGTG
1 GCAAAGCCACTAATAACAGTAAACGAG
** *
44729159 GCGTAGCCACTAATATCAG-AATACGAG
1 GCAAAGCCACTAATAACAGTAA-ACGAG
44729186 GCAAAGCCACTA
1 GCAAAGCCACTA
44729198 GCACAGTAGT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
26 2 0.06
27 29 0.94
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.17
Consensus pattern (27 bp):
GCAAAGCCACTAATAACAGTAAACGAG
Found at i:44734597 original size:50 final size:50
Alignment explanation
Indices: 44734477--44734916 Score: 356
Period size: 50 Copynumber: 8.8 Consensus size: 50
44734467 ATTGTGAGAA
* *
44734477 CACATGTGTAGTACTAAGTGCAAGCTACTATGTGTTTAAGACA-ATT-TTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTG--T-A-CCAGATTGTTAGGT
* * *
44734529 CACGTGTGTAGTAGTAAGTGGAGGCTACTATGTGTACCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * *
44734579 CGCATGTGTAGTTCTAAGTGCAGGCTACTAT-TGTACCCGATAGTTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTG-TT-AGGT
* ** * * * *
44734629 CACGTGTGTAGTACTAAGTGCAGGCTACTACATTTATCAGATGGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * *
44734679 CAC--GTGT-GTACTAAGTGCAGGCTACTACGTGTACCCGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * * *
44734726 CGCATGATGTAGTAGTAAGTGCAGGCTACTATGTGTACCCG-TTAACTTTGAT
1 CACATG-TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATT--GTTAGGT
* * * ** * * *
44734778 CACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATTAGATGGATAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * * *
44734828 CACATGTCTAGTACTAAGTGTAGGCTACTACGTGTACTAGATTGATAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
* * * *
44734878 CGCATATGTAGTACCAAGTGCAGGCTACTATGCGTACCA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
44734917 AAGAGCTTCG
Statistics
Matches: 310, Mismatches: 65, Indels: 28
0.77 0.16 0.07
Matches are distributed among these distances:
47 35 0.11
48 6 0.02
49 16 0.05
50 150 0.48
51 65 0.21
52 38 0.12
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTAGGT
Found at i:44738310 original size:32 final size:33
Alignment explanation
Indices: 44738273--44738342 Score: 115
Period size: 35 Copynumber: 2.1 Consensus size: 33
44738263 ATATGTATTG
44738273 AATACCGG-GATGTCTGAGTCGAGGCTTGAATC
1 AATACCGGAGATGTCTGAGTCGAGGCTTGAATC
44738305 AATACCGGTAAGATGTCTGAGTCGAGGCTTGAATC
1 AATACCGG--AGATGTCTGAGTCGAGGCTTGAATC
44738340 AAT
1 AAT
44738343 GCCGATAATC
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 8 0.23
35 27 0.77
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.26
Consensus pattern (33 bp):
AATACCGGAGATGTCTGAGTCGAGGCTTGAATC
Found at i:44740025 original size:39 final size:40
Alignment explanation
Indices: 44739830--44740045 Score: 248
Period size: 40 Copynumber: 5.5 Consensus size: 40
44739820 CAACCAAGTA
** *
44739830 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTAGCACAAATG
*
44739868 CCTTCGGGACTTAGCCCGGTTATAGTAACTCA-CACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACT-AGCACAAATG
* *
44739908 CCTTCGGGACTTAGCCCCGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TAGCACAAATG
* *
44739948 CCTTCGGGACTTATCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
* * *
44739988 CCTTCAGGACTT-GCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCACAAATG
44740027 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
44740046 TTATCATCCA
Statistics
Matches: 154, Mismatches: 15, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
38 14 0.09
39 46 0.30
40 92 0.60
41 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATG
Found at i:44744612 original size:40 final size:39
Alignment explanation
Indices: 44744528--44744711 Score: 201
Period size: 39 Copynumber: 4.6 Consensus size: 39
44744518 TTGAATGATG
* * * *
44744528 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
44744568 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
44744608 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
44744647 TCCGGGTTAAGTCCCAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTA-AA
*
44744687 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
44744712 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 67 0.55
40 46 0.38
41 8 0.07
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:44744729 original size:79 final size:79
Alignment explanation
Indices: 44744529--44744734 Score: 197
Period size: 79 Copynumber: 2.6 Consensus size: 79
44744519 TGAATGATGT
** * * * ** * *
44744529 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACTATATCCGGGTTAAGATCCCAAGGCAATT
*
44744593 GTGCGAGATACTAATT
64 GTGCGAGATACTAATA
** *
44744609 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAG-TCCCAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGGTTAAGATCCCAAGGCAATTGT
*
44744673 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
*
44744687 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAA
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTATATCCGGGTTAA
44744735 ATTCCGAAGG
Statistics
Matches: 108, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
77 2 0.02
78 39 0.36
79 50 0.46
80 17 0.16
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGGTTAAGATCCCAAGGCAATTGT
GCGAGATACTAATA
Found at i:44749694 original size:40 final size:40
Alignment explanation
Indices: 44749611--44749826 Score: 273
Period size: 40 Copynumber: 5.5 Consensus size: 40
44749601 CAACCAAGTA
** *
44749611 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
44749649 CCTTCGGGACTTAGCCTGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
44749689 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
44749729 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * **
44749769 CCTTCGAGACTT-GCCCGGA-ACTAGTCACTAGCGTAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
44749808 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
44749827 TTATCATCCA
Statistics
Matches: 158, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
38 14 0.09
39 45 0.28
40 97 0.61
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:44749821 original size:119 final size:118
Alignment explanation
Indices: 44749611--44749826 Score: 285
Period size: 119 Copynumber: 1.8 Consensus size: 118
44749601 CAACCAAGTA
** * * * *
44749611 CCTTCGGGGTTTAGCCGGATATAGCTACTGCTCAAATGCCTTCGGGACTTAGCCTGGTTATAGTA
1 CCTTCGGGACTTAGCCGGATATAGCTACTGCACAAATGCCTTCGAGACTTAGCCCGGTAATAGTA
*
44749676 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCACAAATG
66 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCACAAATG
44749729 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGAGACTT-GCCCGG-AACT
1 CCTTCGGGACTTAG-CCGGATATAGCT-ACT-GCACAAATGCCTTCGAGACTTAGCCCGGTAA-T
* **
44749791 AGTCACTAGCGTAAATGCCTTCGGGACTTAGCCCGG
62 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGG
44749827 TTATCATCCA
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 14 0.17
119 51 0.61
120 19 0.23
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.25
Consensus pattern (118 bp):
CCTTCGGGACTTAGCCGGATATAGCTACTGCACAAATGCCTTCGAGACTTAGCCCGGTAATAGTA
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCACAAATG
Found at i:44752960 original size:28 final size:28
Alignment explanation
Indices: 44752886--44752963 Score: 102
Period size: 29 Copynumber: 2.8 Consensus size: 28
44752876 CTGTAAAAGT
* * *
44752886 GATTCGGCCTAGTGGGCCATATAGATGT
1 GATTGGGCCTAGTGGGCCATATAAATGA
*
44752914 GATTTGGGCCTAATGGGCCATATAAATGA
1 GA-TTGGGCCTAGTGGGCCATATAAATGA
*
44752943 GATTGGGCCTAGTAGGCCATA
1 GATTGGGCCTAGTGGGCCATA
44752964 AGCATGTATG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 19 0.44
29 24 0.56
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.27
Consensus pattern (28 bp):
GATTGGGCCTAGTGGGCCATATAAATGA
Found at i:44756602 original size:16 final size:15
Alignment explanation
Indices: 44756567--44756596 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
44756557 AGTAGATCGG
44756567 CAAAAGCCGAAATGC
1 CAAAAGCCGAAATGC
44756582 CAAAATGCCGAAATG
1 CAAAA-GCCGAAATG
44756597 TTAAAAAGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.47, C:0.23, G:0.20, T:0.10
Consensus pattern (15 bp):
CAAAAGCCGAAATGC
Found at i:44756903 original size:28 final size:29
Alignment explanation
Indices: 44756831--44756908 Score: 97
Period size: 28 Copynumber: 2.7 Consensus size: 29
44756821 CTGTAAAAGT
* *
44756831 GATTGGGCCTAGTGGGCCTTATAGATGTG
1 GATTGGGCCTAGTGGGCCATATAGATGTA
* *
44756860 GTTTGGGCCTAATGGGCCATAT-GAAT-TA
1 GATTGGGCCTAGTGGGCCATATAG-ATGTA
44756888 GATTGGGCCTAGTGGGCCATA
1 GATTGGGCCTAGTGGGCCATA
44756909 AGCATATATG
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
28 21 0.50
29 21 0.50
ACGTcount: A:0.21, C:0.15, G:0.35, T:0.29
Consensus pattern (29 bp):
GATTGGGCCTAGTGGGCCATATAGATGTA
Found at i:44758932 original size:28 final size:29
Alignment explanation
Indices: 44758884--44758950 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
44758874 AAGTCTACAT
* *
44758884 ACATGCATATGGTCCACTAGGCCC-AATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
* *
44758912 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCCAAATC
44758941 ACATTCATAT
1 ACATTCATAT
44758951 TCATGCTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
28 20 0.61
29 13 0.39
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (29 bp):
ACATTCATATGGCCCACTAGGCCCAAATC
Found at i:44770551 original size:12 final size:14
Alignment explanation
Indices: 44770536--44770567 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
44770526 GTGAGAACAC
44770536 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
44770548 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
44770562 ATGTGT
1 ATGTGT
44770568 TTAAGACAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.41
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:44770650 original size:50 final size:50
Alignment explanation
Indices: 44770579--44770916 Score: 300
Period size: 50 Copynumber: 6.7 Consensus size: 50
44770569 TAAGACAGTT
*
44770579 TTAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * *
44770629 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * * * *
44770679 TTTCGATCACGTGTGTTGTACTAAATGCAGGCTACTACATGTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* * * * *
44770730 TTAGGTCACGTGTGTGGTACTAAGTGCAGGCTACTATGCGTACC-CATTAAC
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATT--G
* * * * *
44770781 TTCGATCACGTGTGTAGTACTAAGTGCAGGGTACTACGTGTATCAGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
** * * * * **
44770831 AGAAGTCAAGTGTGTAGTACTAAGTGCCGACTACTACGTGTACTGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
* ** * * *
44770881 ATAGGTTGCATGTGTAGTACCAACTGCAGGCTACTA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
44770917 TGCATACCAG
Statistics
Matches: 221, Mismatches: 63, Indels: 8
0.76 0.22 0.03
Matches are distributed among these distances:
49 2 0.01
50 142 0.64
51 75 0.34
52 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
Found at i:44770727 original size:101 final size:101
Alignment explanation
Indices: 44770584--44770866 Score: 372
Period size: 101 Copynumber: 2.8 Consensus size: 101
44770574 CAGTTTTAGG
* * * *
44770584 TCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
**
44770649 TAAGTGCAGGCTACTATGCGTACCCGA-TAGTTTCGA
66 TAAGTGCAGGCTACTATGCGTACCC-ATTAACTTCGA
* * * * *
44770685 TCACGTGTGTTGTACTAAATGCAGGCTACTACATGTATCAGATGGTTAGGTCACGTGTGTGGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
44770750 TAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
66 TAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
* * ** *
44770786 TCACGTGTGTAGTACTAAGTGCAGGGTACTACGTGTATCAGATAGAGAAGTCA-AGTGTGTAGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACA-TGTGTAGTA
* *
44770850 CTAAGTGCCGACTACTA
65 CTAAGTGCAGGCTACTA
44770867 CGTGTACTGG
Statistics
Matches: 157, Mismatches: 23, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
100 1 0.01
101 156 0.99
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (101 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAGTAC
TAAGTGCAGGCTACTATGCGTACCCATTAACTTCGA
Found at i:44770886 original size:151 final size:151
Alignment explanation
Indices: 44770580--44770925 Score: 338
Period size: 151 Copynumber: 2.3 Consensus size: 151
44770570 AAGACAGTTT
* * * * * * *
44770580 TAGGTCACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTAGGTCGCATGTGTA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCACATTCTTAGATCACATGTGTA
* * **** * * *
44770645 GTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACGTGTGTTGTACTAAATGCAGG
66 GTACTAAGTGCAGGCTACTACGCGTACCAGATAGAGAAGATCAAGTGTGTAGTACTAAATGCAGA
*
44770710 CTACTACATGTATCAGATGGT
131 CTACTACATGTATCAGATGGA
* * *
44770731 TAGGTCACGTGTGTGGTACTAAGTGCAGGCTACTATGCGTACC-CATTAACTTCGATCACGTGTG
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCACATT--CTTAGATCACATGTG
* * * * *
44770795 TAGTACTAAGTGCAGGGTACTACGTGTATCAGATAGAGAAG-TCAAGTGTGTAGTACTAAGTGCC
64 TAGTACTAAGTGCAGGCTACTACGCGTACCAGATAGAGAAGATCAAGTGTGTAGTACTAAATGCA
* * *
44770859 GACTACTACGTGTA-CTGGATTGA
129 GACTACTACATGTATC-AGATGGA
** * * * *
44770882 TAGGTTGCATGTGTAGTACCAACTGCAGGCTACTATGCATACCA
1 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
44770926 GAGAGCTTCG
Statistics
Matches: 156, Mismatches: 35, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
150 4 0.03
151 110 0.71
152 42 0.27
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (151 bp):
TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCACATTCTTAGATCACATGTGTA
GTACTAAGTGCAGGCTACTACGCGTACCAGATAGAGAAGATCAAGTGTGTAGTACTAAATGCAGA
CTACTACATGTATCAGATGGA
Found at i:44771748 original size:179 final size:180
Alignment explanation
Indices: 44771484--44771848 Score: 536
Period size: 180 Copynumber: 2.0 Consensus size: 180
44771474 GAATCTAAGA
* * * *
44771484 TCTGTACAATGAGATAAGTAATTTTTATTGAAGAAAGGTTGGAACCGTTGGATAGTTAAACAGGG
1 TCTGTACAATGAGATAAATAATTTTTAGTGAAGAAAGGTGGGAACCGTTGGATAGTGAAACAGGG
44771549 GTATATTTAATGAATAAACTGTAC-AATTGGCTAAACCAAAAATTCTGAAAATTTTATGGCAAGA
66 GTATATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGCAAGA
* *** *
44771613 ATATATTTGAGTCTAGTTGCTAAGAAAATTATTGGTTCTTAATTTGGAGT
131 ATATATGTGAGTCTAGTTGCTAAGAAAATTAACAGATCTTAATTTGGAGT
* * * * * *
44771663 TTTGTACCATGAGATAAATCATTTTTAGTGAAGAGAGGTGGGAACTGTTGGATAGTGAAACGGGG
1 TCTGTACAATGAGATAAATAATTTTTAGTGAAGAAAGGTGGGAACCGTTGGATAGTGAAACAGGG
*
44771728 GTA-ATTTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGTAAG
66 GTATA-TTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGCAAG
** *
44771792 AATATATGTGAGTCTAGTTTTTGAGAAAATTAACAGATCTTAATTTGGAGT
130 AATATATGTGAGTCTAGTTGCTAAGAAAATTAACAGATCTTAATTTGGAGT
44771843 TCTGTA
1 TCTGTA
44771849 GCTCTAGCTA
Statistics
Matches: 164, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
178 1 0.01
179 77 0.47
180 86 0.52
ACGTcount: A:0.36, C:0.08, G:0.21, T:0.35
Consensus pattern (180 bp):
TCTGTACAATGAGATAAATAATTTTTAGTGAAGAAAGGTGGGAACCGTTGGATAGTGAAACAGGG
GTATATTTAATGAATAAACTGTACTAATTGGCTAAACCAAAAATTCTGAAAATTTTATGGCAAGA
ATATATGTGAGTCTAGTTGCTAAGAAAATTAACAGATCTTAATTTGGAGT
Found at i:44777203 original size:21 final size:21
Alignment explanation
Indices: 44777177--44777216 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
44777167 TGGTTGAAAG
*
44777177 ACACGACTGTGTAACTGAGGC
1 ACACGACCGTGTAACTGAGGC
*
44777198 ACACGACCGTGTAGCTGAG
1 ACACGACCGTGTAACTGAG
44777217 AGACATGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.25, G:0.30, T:0.17
Consensus pattern (21 bp):
ACACGACCGTGTAACTGAGGC
Found at i:44780034 original size:43 final size:42
Alignment explanation
Indices: 44779879--44780069 Score: 129
Period size: 43 Copynumber: 4.5 Consensus size: 42
44779869 CAATGCCATA
* ** * * *
44779879 TCCCAGATATGGTCTTACACATTATCACATATTGATGCCACTG
1 TCCCAGACATGGTCTTACACAAAATCATATAATGATG-CAATG
* * * *
44779922 TCCCAGACAGGGTCATACACGAAATCGATA-AACGATGGCAATG
1 TCCCAGACATGGTCTTACACAAAATC-ATATAATGAT-GCAATG
* **
44779965 TCCTAGACATGGT-TATACACGTAATCATATAATGATGCAAATG
1 TCCCAGACATGGTCT-TACACAAAATCATATAATGATGC-AATG
* * *
44780008 TCCCAGACATGGTCTTATACAAAATCACAATACA--ATGCCAATA
1 TCCCAGACATGGTCTTACACAAAATCA-TATA-ATGATG-CAATG
*
44780051 TTCCAGACATGGTCTTACA
1 TCCCAGACATGGTCTTACA
44780070 TGTAATCTCA
Statistics
Matches: 116, Mismatches: 23, Indels: 18
0.74 0.15 0.11
Matches are distributed among these distances:
42 5 0.04
43 102 0.88
44 8 0.07
45 1 0.01
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACAAAATCATATAATGATGCAATG
Found at i:44780059 original size:86 final size:86
Alignment explanation
Indices: 44779867--44780076 Score: 212
Period size: 86 Copynumber: 2.5 Consensus size: 86
44779857 ATATAGCTCG
* * * * * * *
44779867 AACAATGCC-ATATCCCAGATATGGTCTTACACATTATCACATATTGATGCCACTGTCCCAGACA
1 AACAATGCCAATATTCCAGACATGGTCTTACACGTAATCACATAATGATGCAAATGTCCCAGACA
* *
44779931 GGGTCATACACGAAATCGATA
66 GGGTCATACACAAAATCGACA
* * * *
44779952 AACGATGGCAAT-GTCCTAGACATGGT-TATACACGTAATCATATAATGATGCAAATGTCCCAGA
1 AACAATGCCAATATTCC-AGACATGGTCT-TACACGTAATCACATAATGATGCAAATGTCCCAGA
* * *
44780015 CATGGTCTTATACAAAATC-ACA
64 CAGGGTCATACACAAAATCGACA
*
44780037 ATACAATGCCAATATTCCAGACATGGTCTTACATGTAATC
1 A-ACAATGCCAATATTCCAGACATGGTCTTACACGTAATC
44780077 TCATCTCGGT
Statistics
Matches: 99, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
85 13 0.13
86 82 0.83
87 4 0.04
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (86 bp):
AACAATGCCAATATTCCAGACATGGTCTTACACGTAATCACATAATGATGCAAATGTCCCAGACA
GGGTCATACACAAAATCGACA
Found at i:44798983 original size:42 final size:42
Alignment explanation
Indices: 44798900--44799037 Score: 143
Period size: 43 Copynumber: 3.2 Consensus size: 42
44798890 TCTAACCCAC
* * * *
44798900 GTCTTGGACGTTGGCATCGATTTATGATTTACGTGTAAGACCA
1 GTCTAGGACATTGGCATCGATATATGATTT-CATGTAAGACCA
44798943 TGTCTAGGACATTGGCATCG-TATATGATTTCATGTAAGACCCA
1 -GTCTAGGACATTGGCATCGATATATGATTTCATGTAAGA-CCA
* * * * * *
44798986 GTCTGGGATAGTGGCATCGATATTTGATTACATGCAAGACCA
1 GTCTAGGACATTGGCATCGATATATGATTTCATGTAAGACCA
44799028 CGTCTAGGAC
1 -GTCTAGGAC
44799038 TTTAGTAGCT
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
42 27 0.34
43 35 0.44
44 17 0.22
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
GTCTAGGACATTGGCATCGATATATGATTTCATGTAAGACCA
Found at i:44806463 original size:118 final size:119
Alignment explanation
Indices: 44806254--44806475 Score: 290
Period size: 118 Copynumber: 1.9 Consensus size: 119
44806244 TCCTCGTTCA
*
44806254 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
44806319 TTAGTAACTCGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTGCACC
66 ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTGCACC
* * **
44806373 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * * *
44806435 ATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
64 ATATAGTAAC-TAGCACAAATGCCATCGGGACTTAACCCGGA
44806476 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
117 4 0.04
118 65 0.73
119 20 0.22
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTAGCACAAATGCCATCGGGACTTAACCCGGATTTAGTAACTGCACC
Found at i:44806475 original size:40 final size:40
Alignment explanation
Indices: 44806252--44806475 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
44806242 GCTCCTCGTT
* *
44806252 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
44806292 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
44806332 CAAATGCCATCGGGACTTAACCCGGATTTAGTAACT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
44806371 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
44806410 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
44806451 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
44806476 CATCATTCAA
Statistics
Matches: 160, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
38 19 0.12
39 28 0.17
40 101 0.63
41 12 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:44816824 original size:46 final size:46
Alignment explanation
Indices: 44816757--44817064 Score: 420
Period size: 46 Copynumber: 6.7 Consensus size: 46
44816747 AATAGAAAAC
44816757 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
* * *
44816803 GTGTAAGACCGTGGTTGAAAGATACCATGACAACCTGATATGAAAC
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
44816849 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
* * *
44816895 GTGTAAGACTATGGTTGAAAGATACCATGGCAACGTGACATGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
* * ***
44816941 GTTTAAGACCATGGTTGAAAGATACCATGGCAACGTGACGGGGAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA-TATGAAAT
** * * *
44816988 GAATAAGACCATGGTTGAATGATACCATGGCAACATGACA-GAAAT
1 GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
* * * *
44817033 GAGTAAGACCATAGTTGAAAGACACTATGGCA
1 GTGTAAGACCATGGTTGAAAGATACCATGGCA
44817065 TCATGTCGAA
Statistics
Matches: 236, Mismatches: 25, Indels: 3
0.89 0.09 0.01
Matches are distributed among these distances:
45 32 0.14
46 165 0.70
47 39 0.17
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (46 bp):
GTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAAT
Found at i:44821868 original size:28 final size:28
Alignment explanation
Indices: 44821836--44821919 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
44821826 AACTTCGATC
44821836 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
44821864 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
44821886 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
44821914 ACGTGT
1 ACGTGT
44821920 ACCGGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:44821961 original size:49 final size:49
Alignment explanation
Indices: 44821798--44822012 Score: 268
Period size: 49 Copynumber: 4.3 Consensus size: 49
44821788 ATATGATGAA
* * * ** *
44821798 TAAGAGCAGGCTACTATGCGTACCCAATAACTTCGATCACGTGTGTAGTAC
1 TAAGTGCAGGCTACTACGTGTACCGGATAA-TT-GGTCACGTGTGTAGTAC
* * **
44821849 TAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACGTGTGTAGTAC
** * *
44821899 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTTGCATGTGTAGTAG
1 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTAC
*
44821948 TAAGTGTAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTAC
1 TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTAC
44821997 TAAGTGCAGGCTACTA
1 TAAGTGCAGGCTACTA
44822013 TGCATACCCG
Statistics
Matches: 140, Mismatches: 24, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
49 72 0.51
50 46 0.33
51 22 0.16
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACGTGTGTAGTAC
Found at i:44829326 original size:46 final size:46
Alignment explanation
Indices: 44829276--44829451 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
44829266 TGATTGAGCA
44829276 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44829322 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
44829367 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
44829415 -CCTGAGCTCGTTGAGTTGAATCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
44829452 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 10, Indels: 20
0.79 0.07 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 60 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:44829432 original size:93 final size:93
Alignment explanation
Indices: 44829273--44829444 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
44829263 GGATGATTGA
*
44829273 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
*
44829338 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAATCCGAGTTCGTGAGATGTAACTAG
*
44829366 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
44829430 TTGAATCCGAGTTCG
65 TTGAATCCGAGTTCG
44829445 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAATCCGAGTTCGTGAGATGTAACTAG
Found at i:44833347 original size:27 final size:27
Alignment explanation
Indices: 44833295--44833384 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
44833285 GTGACAGAGT
44833295 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
44833324 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
44833351 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
44833379 CACCAG
1 CACCAG
44833385 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:44833537 original size:28 final size:28
Alignment explanation
Indices: 44833490--44833556 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
44833480 AAATTAACCC
*
44833490 TAGGGGTATAAAGGTCATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
* *
44833518 TAGGGGTATTATGGTAATTTTGCATACA
1 TAGGGGTATAAAGGTAATTTTGCATACA
44833546 TAGGGGTATAA
1 TAGGGGTATAA
44833557 TAGTACATCT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAAAGGTAATTTTGCATACA
Found at i:44834650 original size:5 final size:5
Alignment explanation
Indices: 44834635--44834673 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
44834625 AGATAGATGG
*
44834635 AGAAA AAAAA AGAAA AGAAA AGAAA A-AAA AGGAAA AGAA
1 AGAAA AGAAA AGAAA AGAAA AGAAA AGAAA A-GAAA AGAA
44834674 GGAAGAATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 4 0.13
5 22 0.73
6 4 0.13
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:44834658 original size:20 final size:20
Alignment explanation
Indices: 44834635--44834673 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
44834625 AGATAGATGG
44834635 AGAAAAAAAAAGAAAAGAAA
1 AGAAAAAAAAAGAAAAGAAA
*
44834655 AGAAAAAAAAGGAAAAGAA
1 AGAAAAAAAAAGAAAAGAA
44834674 GGAAGAATGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (20 bp):
AGAAAAAAAAAGAAAAGAAA
Found at i:44837957 original size:40 final size:40
Alignment explanation
Indices: 44837874--44838095 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
44837864 TTGAATGCTG
* * * * * *
44837874 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
* * * *
44837914 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
44837954 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
44837994 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
44838034 TCCGGGTTATGT-CCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
44838072 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
44838096 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
38 22 0.14
39 22 0.14
40 105 0.67
41 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:44838115 original size:78 final size:80
Alignment explanation
Indices: 44837949--44838130 Score: 208
Period size: 78 Copynumber: 2.3 Consensus size: 80
44837939 GTGCGAGATA
* * *
44837949 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
44838014 CAGTCGTGCGAGTTG
66 CAGTCGAACGAGGAG
* * * *
44838029 TTAAATCCGGGTTATGT-CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
* *
44838092 CATTTGAACGAGGAG
66 CAGTCGAACGAGGAG
* *
44838107 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
44838131 TACGTGATTT
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
77 6 0.07
78 52 0.62
79 11 0.13
80 15 0.18
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CAGTCGAACGAGGAG
Found at i:44845864 original size:40 final size:40
Alignment explanation
Indices: 44845740--44845950 Score: 193
Period size: 40 Copynumber: 5.4 Consensus size: 40
44845730 CTGTCCGGGC
* * * * * *
44845740 AAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATT
1 AAGTCCCGAAGGCATTCGTGC-GAGTTACTAAATCCGGGTT
* * *
44845780 AAGAT-CCGAA-GCCTTTGTGCGAGATACTAAAT-CGGGTT
1 AAG-TCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTT
*
44845818 AAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTT
1 AAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTT
* **
44845858 AAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAATCC-GGTT
1 AAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTT
* * * *
44845897 ATGTCCCGAA-GCATT-GTGTGAGTTACTAAAACCGGGCT
1 AAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTT
*
44845935 ATGTCCCGAAGGCATT
1 AAGTCCCGAAGGCATT
44845951 TGAACGAGGA
Statistics
Matches: 145, Mismatches: 19, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
37 15 0.10
38 30 0.21
39 45 0.31
40 54 0.37
41 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
AAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTT
Found at i:44862510 original size:44 final size:44
Alignment explanation
Indices: 44862435--44862529 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
44862425 TTCAATGAAC
*
44862435 TCGCACACTTAGTGCCAATTTAATTAGCCGAAGC-TATAATAT-TA
1 TCGCACACTTAGTGCCAATTTAATTAACCGAA-CTTAT-ATATGTA
*
44862479 TCGCACACTTAGTGCC-ATTTCATTAAACCGAACTTATATATGTA
1 TCGCACACTTAGTGCCAATTTAATT-AACCGAACTTATATATGTA
44862523 TCGCACA
1 TCGCACA
44862530 AATAATGCCC
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
43 12 0.26
44 34 0.74
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.32
Consensus pattern (44 bp):
TCGCACACTTAGTGCCAATTTAATTAACCGAACTTATATATGTA
Found at i:44866327 original size:30 final size:30
Alignment explanation
Indices: 44866293--44866352 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
44866283 TGTACCTATC
*
44866293 TATTTTGATGGATGAAA-TTGAGATATTAAT
1 TATTTTGATGAAT-AAAGTTGAGATATTAAT
*
44866323 TATTTTGTTGAATAAATGTTGAGATATTAA
1 TATTTTGATGAATAAA-GTTGAGATATTAA
44866353 ATGAAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.12
30 11 0.42
31 12 0.46
ACGTcount: A:0.37, C:0.00, G:0.18, T:0.45
Consensus pattern (30 bp):
TATTTTGATGAATAAAGTTGAGATATTAAT
Found at i:44866443 original size:33 final size:33
Alignment explanation
Indices: 44866387--44866461 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
44866377 TAAGTTGCCA
* *
44866387 AATAAGACCATAGTCGGGCTATGGCA-ATCGAAT
1 AATAAGACCATAGCCGAGCTATGGCATA-CGAAT
*
44866420 AATAAGACCATAGCCGAGTTATGGCATACGAAT
1 AATAAGACCATAGCCGAGCTATGGCATACGAAT
*
44866453 GA-AAGACCA
1 AATAAGACCA
44866462 CGACAAGGCC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
32 7 0.19
33 29 0.78
34 1 0.03
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (33 bp):
AATAAGACCATAGCCGAGCTATGGCATACGAAT
Found at i:44874473 original size:31 final size:31
Alignment explanation
Indices: 44874429--44874504 Score: 116
Period size: 31 Copynumber: 2.5 Consensus size: 31
44874419 GTCCAAAAGT
* *
44874429 CACACAGGCGTGTGTGACCACACGGCCTACC
1 CACACGGGCGTGTGTGACCACACAGCCTACC
*
44874460 CATACGGGCGTGTGTGACCACACAGCCTACC
1 CACACGGGCGTGTGTGACCACACAGCCTACC
*
44874491 CACATGGGCGTGTG
1 CACACGGGCGTGTG
44874505 ACTGTCCAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.21, C:0.34, G:0.29, T:0.16
Consensus pattern (31 bp):
CACACGGGCGTGTGTGACCACACAGCCTACC
Found at i:44881395 original size:42 final size:42
Alignment explanation
Indices: 44881343--44881429 Score: 147
Period size: 42 Copynumber: 2.1 Consensus size: 42
44881333 ACCGTGTGAC
*
44881343 CTGACCGTGTGTCACACACAACTGAGACACATGCCTGTGTCT
1 CTGACAGTGTGTCACACACAACTGAGACACATGCCTGTGTCT
* *
44881385 CTGACAGTGTGTCACACTCGACTGAGACACATGCCTGTGTCT
1 CTGACAGTGTGTCACACACAACTGAGACACATGCCTGTGTCT
44881427 CTG
1 CTG
44881430 CCCATGTGGA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.25
Consensus pattern (42 bp):
CTGACAGTGTGTCACACACAACTGAGACACATGCCTGTGTCT
Found at i:44889323 original size:13 final size:14
Alignment explanation
Indices: 44889298--44889338 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
44889288 AAATAAGATA
44889298 AATAAATATAAAAGT
1 AATAAATA-AAAAGT
*
44889313 GA-AAATAAAAA-T
1 AATAAATAAAAAGT
44889325 AATAAATAAAAAGT
1 AATAAATAAAAAGT
44889339 TTTTAAACAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
12 2 0.09
13 13 0.59
14 6 0.27
15 1 0.05
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (14 bp):
AATAAATAAAAAGT
Found at i:44897687 original size:47 final size:46
Alignment explanation
Indices: 44897636--44897768 Score: 187
Period size: 46 Copynumber: 2.9 Consensus size: 46
44897626 GAATTATGAG
*
44897636 GCATCCGAACTCATTGAGTTGTATTCCGAGTTCACTTATGGATGCAA
1 GCATCCGAACTCATTGAGTTGTGTTCCGAGTTCA-TTATGGATGCAA
44897683 GCATCCGAACTCATTGAGTTGTGTTCCGAGTTCATTATGGATGCAA
1 GCATCCGAACTCATTGAGTTGTGTTCCGAGTTCATTATGGATGCAA
* * * * *
44897729 ACA-CCTGAGCTCGTTGAGTTGCGTTCTGAGTTCATTATGG
1 GCATCC-GAACTCATTGAGTTGTGTTCCGAGTTCATTATGG
44897769 GTGAGATTAT
Statistics
Matches: 79, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
45 2 0.03
46 44 0.56
47 33 0.42
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (46 bp):
GCATCCGAACTCATTGAGTTGTGTTCCGAGTTCATTATGGATGCAA
Found at i:44920389 original size:55 final size:55
Alignment explanation
Indices: 44920266--44920393 Score: 143
Period size: 55 Copynumber: 2.3 Consensus size: 55
44920256 TGCGACATGG
** * *
44920266 CCGTGGTCGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGTGGAAGAA
1 CCGTGGTCGAACCTGTTAAAACAACACGAGCGTGCGACACGCCCGTGTGCAAGAA
* * * *
44920321 CCGTGGGT-GAACCTGTTAAAACAGCACGAGCGTGCGCCACGCCCGTGT-CTAGCA
1 CCGT-GGTCGAACCTGTTAAAACAACACGAGCGTGCGACACGCCCGTGTGCAAGAA
*
44920375 CTCGTGGTCAAACCTGTTA
1 C-CGTGGTCGAACCTGTTA
44920394 GATTGACACA
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
54 7 0.11
55 51 0.84
56 3 0.05
ACGTcount: A:0.24, C:0.30, G:0.29, T:0.16
Consensus pattern (55 bp):
CCGTGGTCGAACCTGTTAAAACAACACGAGCGTGCGACACGCCCGTGTGCAAGAA
Found at i:44938152 original size:33 final size:33
Alignment explanation
Indices: 44938110--44938198 Score: 142
Period size: 33 Copynumber: 2.7 Consensus size: 33
44938100 TTTCAATTAG
*
44938110 GATTTAGCCTGGACTGTTAATCCTAACTGACTA
1 GATTTAGCCTGGACTGGTAATCCTAACTGACTA
* *
44938143 GATTTAGCCTAGACTGGTAATCCTAACTGACTG
1 GATTTAGCCTGGACTGGTAATCCTAACTGACTA
*
44938176 GATTTATCCTGGACTGGTAATCC
1 GATTTAGCCTGGACTGGTAATCC
44938199 AGAATAAACT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (33 bp):
GATTTAGCCTGGACTGGTAATCCTAACTGACTA
Found at i:44952225 original size:49 final size:50
Alignment explanation
Indices: 44951948--44952227 Score: 221
Period size: 50 Copynumber: 5.6 Consensus size: 50
44951938 TGGGAGAACG
* * ***
44951948 CATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGG--TTAGGTCA
* * * *
44952000 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAGTTAGGTCG
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCA
* * * ** **
44952050 CAGGTGTAGTACTAAGTGCAGGCTA-T-CATGCATACC---CGGCAACTTCAA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTG--TACCAGATGGTTAGGTC-A
* * *
44952098 TCATGTGTGCAGTACTAAGTGCAGGCTACTACGTTTATCAGATGGTTAGTTCA
1 -CATGTGT--AGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCA
* * * *
44952151 CGTGTGTAGTACTAGGTGCAAGCTACTACGTGTACCAGATTGTT-GGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCA
* *
44952200 CATGTGTTGTACTAAGTGCTGGCTACTA
1 CATGTGTAGTACTAAGTGCAGGCTACTA
44952228 TGCGTACTAG
Statistics
Matches: 177, Mismatches: 40, Indels: 25
0.73 0.17 0.10
Matches are distributed among these distances:
47 4 0.02
48 3 0.02
49 34 0.19
50 65 0.37
51 21 0.12
52 41 0.23
53 3 0.02
54 6 0.03
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGGTTAGGTCA
Found at i:44952456 original size:16 final size:15
Alignment explanation
Indices: 44952435--44952464 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
44952425 GAATGGAGTA
44952435 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
44952451 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
44952465 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:44954633 original size:27 final size:27
Alignment explanation
Indices: 44954597--44954692 Score: 70
Period size: 27 Copynumber: 3.6 Consensus size: 27
44954587 CAGCGACAGT
* *
44954597 AATATAATTGGCACATAGCTATGGGTA
1 AATATGATTGGCACATAGCTATAGGTA
* * * *
44954624 AATATGATTGACAAAGAG-TCATCA-ATA
1 AATATGATTGGCACATAGCT-AT-AGGTA
* * *
44954651 AATATGATAGGCACATAGCCACAGGTA
1 AATATGATTGGCACATAGCTATAGGTA
*
44954678 AATACGATTGGCACA
1 AATATGATTGGCACA
44954693 AAACCATAAT
Statistics
Matches: 50, Mismatches: 15, Indels: 8
0.68 0.21 0.11
Matches are distributed among these distances:
26 2 0.04
27 48 0.96
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.24
Consensus pattern (27 bp):
AATATGATTGGCACATAGCTATAGGTA
Found at i:44954721 original size:22 final size:22
Alignment explanation
Indices: 44954696--44954745 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
44954686 TGGCACAAAA
44954696 CCATAATCAAGATAGCACAGAG
1 CCATAATCAAGATAGCACAGAG
* * * * *
44954718 CCATATTTAGGCTGGCACAGAG
1 CCATAATCAAGATAGCACAGAG
44954740 CCATAA
1 CCATAA
44954746 ACAGATTAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.24, G:0.20, T:0.18
Consensus pattern (22 bp):
CCATAATCAAGATAGCACAGAG
Found at i:44955017 original size:14 final size:14
Alignment explanation
Indices: 44954995--44955028 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
44954985 AAAAGCATGC
44954995 CAGTCATACAACCA
1 CAGTCATACAACCA
* *
44955009 CAGTTATACAATCA
1 CAGTCATACAACCA
44955023 CAGTCA
1 CAGTCA
44955029 AATCAATCAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.29, G:0.09, T:0.21
Consensus pattern (14 bp):
CAGTCATACAACCA
Found at i:44955175 original size:27 final size:27
Alignment explanation
Indices: 44955099--44955175 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
44955089 ACCCTACAAA
* **
44955099 GGTATTTCGATAATTTTACAAACTGGG
1 GGTATTTCGATAATTTTACAAATTAAG
44955126 GGTATTTCGATAATTTTACAAATTAAG
1 GGTATTTCGATAATTTTACAAATTAAG
*
44955153 GGTATTTCAATAATTTTACAAAT
1 GGTATTTCGATAATTTTACAAAT
44955176 CGGAGTCTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATTAAG
Found at i:44958902 original size:21 final size:21
Alignment explanation
Indices: 44958878--44958917 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
44958868 TTCAATCCTA
44958878 TTAAAAATAAT-TTATTAAATC
1 TTAAAAA-AATCTTATTAAATC
*
44958899 TTAATAAAATCTTATTAAA
1 TTAAAAAAATCTTATTAAA
44958918 CCAAACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAAAAAAATCTTATTAAATC
Found at i:44959594 original size:23 final size:23
Alignment explanation
Indices: 44959563--44959631 Score: 120
Period size: 23 Copynumber: 3.0 Consensus size: 23
44959553 GAAATTATAA
* *
44959563 TAATTCCATCAAAATTAGCAACT
1 TAATACCATCAACATTAGCAACT
44959586 TAATACCATCAACATTAGCAACT
1 TAATACCATCAACATTAGCAACT
44959609 TAATACCATCAACATTAGCAACT
1 TAATACCATCAACATTAGCAACT
44959632 ATATATTCAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.43, C:0.25, G:0.04, T:0.28
Consensus pattern (23 bp):
TAATACCATCAACATTAGCAACT
Found at i:44960692 original size:32 final size:32
Alignment explanation
Indices: 44960656--44960722 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
44960646 CTAAGCACAC
44960656 TAAGAGATTCAAACAAAAGACCTAAGGTCTGG
1 TAAGAGATTCAAACAAAAGACCTAAGGTCTGG
44960688 TAAGAGATTCAAACAAAAGACCTAAGGTCTGG
1 TAAGAGATTCAAACAAAAGACCTAAGGTCTGG
44960720 TAA
1 TAA
44960723 ATTAGCAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (32 bp):
TAAGAGATTCAAACAAAAGACCTAAGGTCTGG
Found at i:44966916 original size:43 final size:42
Alignment explanation
Indices: 44966842--44966946 Score: 140
Period size: 43 Copynumber: 2.5 Consensus size: 42
44966832 GAGATTACGC
* *
44966842 GTAAGACCATATCTGGGATATGGCATCGATATTAGACTT-CGT
1 GTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTCCAT
* * *
44966884 GTAAGACTATAGCTGGGCTATTGGCATCGATATGAGATTCCAT
1 GTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTCCAT
44966927 GTAAGACCATATCTGGGATA
1 GTAAGACCATATCTGGGATA
44966947 CGACATTGGT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 19 0.36
43 34 0.64
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
GTAAGACCATATCTGGGATATGGCATCGATATGAGATTCCAT
Found at i:44973935 original size:46 final size:45
Alignment explanation
Indices: 44973826--44974039 Score: 166
Period size: 46 Copynumber: 4.6 Consensus size: 45
44973816 GTAAGGTGCT
* * * *
44973826 GATGCCATGTCCCAGACATGGTTTTACACTGAC-ACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTACGTCCCG-AGGCC
* *
44973872 GATGTATGTCCCAGACATGTCTTACACTGGCTTACGTCCCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TACGTCCCGAGGCC
* * * * * * *
44973918 GATGCATGTCCCAGACATGCCTTACTCTAGCTTTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TACGTCCCGAGGCC
* * *
44973964 AATGCTATGTCCCAGACATGGTCTTACACTGGCT-C-TCACAATGTGGCC
1 GATGC-ATGTCCCAGACAT-GTCTTACACTGGCTACGTC-C--CGAGGCC
44974012 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
44974040 AGCTCGCATA
Statistics
Matches: 135, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
44 11 0.08
45 16 0.12
46 64 0.47
47 27 0.20
48 17 0.13
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.28
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTACGTCCCGAGGCC
Found at i:44974424 original size:30 final size:30
Alignment explanation
Indices: 44974383--44974440 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
44974373 AAATTCACAT
* * *
44974383 CTTTGGTAAAATGATCATTTTGCCCCTAGA
1 CTTTGGCAAAATGACCATTTTACCCCTAGA
44974413 CTTTGGCAAAATGACCATTTTACCCCTA
1 CTTTGGCAAAATGACCATTTTACCCCTA
44974441 TATTTGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTACCCCTAGA
Found at i:44975825 original size:11 final size:10
Alignment explanation
Indices: 44975799--44975824 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
44975789 ATATTAGCAT
44975799 AAAAAATTCA
1 AAAAAATTCA
44975809 AAAAAATTCA
1 AAAAAATTCA
44975819 AAAAAA
1 AAAAAA
44975825 AGGAAAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (10 bp):
AAAAAATTCA
Found at i:44980572 original size:18 final size:18
Alignment explanation
Indices: 44980552--44980585 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
44980542 CAAAAGAACA
44980552 AAAAAAAAGT-GAAAAAG
1 AAAAAAAAGTGGAAAAAG
*
44980569 AAAAGAAAGTGGAAAAA
1 AAAAAAAAGTGGAAAAA
44980586 AAGAGAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.06
Consensus pattern (18 bp):
AAAAAAAAGTGGAAAAAG
Found at i:44982060 original size:99 final size:100
Alignment explanation
Indices: 44981852--44982075 Score: 285
Period size: 99 Copynumber: 2.3 Consensus size: 100
44981842 TGAGGTCCCG
* * * *
44981852 TGTGTAGTACTAAGTGCA-GCTACTATGTGTACCAGATTATTGGTCGCATGTGTAGTACTAATTG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGTG
* *
44981916 CAGGATACTATGCGTACCCGATAACTTCGATCACG
66 CAGGATACTACGCGTACCCGATAACTTCGATCACA
* * * *
44981951 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATT-GGTCACATGTGTAGTACTAAGT
* * *
44982016 GCAGGCTACTACGTGTA-CCGAATAA-TT-GGTCACA
65 GCAGGATACTACGCGTACCCG-ATAACTTCGATCACA
44982050 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
44982076 TGCGTTCCAG
Statistics
Matches: 108, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
99 47 0.44
100 24 0.22
101 37 0.34
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (100 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGATTGGTCACATGTGTAGTACTAAGTG
CAGGATACTACGCGTACCCGATAACTTCGATCACA
Found at i:44982066 original size:49 final size:50
Alignment explanation
Indices: 44981852--44982075 Score: 258
Period size: 49 Copynumber: 4.5 Consensus size: 50
44981842 TGAGGTCCCG
* * *
44981852 TGTGTAGTACTAAGTGCA-GCTACTATGTGTACCAGATTATT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
* * * * * * * *
44981900 TGTGTAGTACTAATTGCAGGATACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTAGGTCACA
* * ** *
44981951 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
44982001 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC-GAATAATT-GGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATAATTAGGTCACA
44982050 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
44982076 TGCGTTCCAG
Statistics
Matches: 148, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
48 17 0.11
49 50 0.34
50 46 0.31
51 35 0.24
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAGGTCACA
Found at i:44990530 original size:69 final size:69
Alignment explanation
Indices: 44990419--44990557 Score: 278
Period size: 69 Copynumber: 2.0 Consensus size: 69
44990409 CATGTTGATG
44990419 CCGTAAGACTTTTACCAAAGCGACATCTTTATTTCTCAACTATTTAACTCCATGAGCTAGAATCT
1 CCGTAAGACTTTTACCAAAGCGACATCTTTATTTCTCAACTATTTAACTCCATGAGCTAGAATCT
44990484 TTAC
66 TTAC
44990488 CCGTAAGACTTTTACCAAAGCGACATCTTTATTTCTCAACTATTTAACTCCATGAGCTAGAATCT
1 CCGTAAGACTTTTACCAAAGCGACATCTTTATTTCTCAACTATTTAACTCCATGAGCTAGAATCT
44990553 TTAC
66 TTAC
44990557 C
1 C
44990558 GGTTCTTCAC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.30, C:0.25, G:0.10, T:0.35
Consensus pattern (69 bp):
CCGTAAGACTTTTACCAAAGCGACATCTTTATTTCTCAACTATTTAACTCCATGAGCTAGAATCT
TTAC
Found at i:45054809 original size:22 final size:22
Alignment explanation
Indices: 45054779--45054820 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
45054769 ATGTTAGTTC
* * *
45054779 TTCTTTTTCTTTTTCTTTTCCA
1 TTCTCTTTCCTTTTCCTTTCCA
45054801 TTCTCTTTCCTTTTCCTTTC
1 TTCTCTTTCCTTTTCCTTTC
45054821 TTCCTTCTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (22 bp):
TTCTCTTTCCTTTTCCTTTCCA
Found at i:45055526 original size:62 final size:62
Alignment explanation
Indices: 45055420--45055556 Score: 157
Period size: 62 Copynumber: 2.2 Consensus size: 62
45055410 TACGAATGGT
* * * * * * *
45055420 CGTGTAACTCACTGTTCATGGTATAAAGCCACATAGCCAGGGACACTGGCGTGTGCCCAGGC
1 CGTGTAACTCACTATTCATGGTATAAAACCACACAGCCAAGGACACGGGCATGTGCCCAAGC
* * * *
45055482 CGTGTAACTCATTATTCATGGTATAAAACTATACGGCCAAGGACACGGGCATGTGCCCAAGC
1 CGTGTAACTCACTATTCATGGTATAAAACCACACAGCCAAGGACACGGGCATGTGCCCAAGC
* *
45055544 TGTGTGACTCACT
1 CGTGTAACTCACT
45055557 GTTGATAATT
Statistics
Matches: 61, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (62 bp):
CGTGTAACTCACTATTCATGGTATAAAACCACACAGCCAAGGACACGGGCATGTGCCCAAGC
Found at i:45059696 original size:40 final size:40
Alignment explanation
Indices: 45059615--45059876 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
45059605 AAACCAAGTA
** * *
45059615 CCTTCGGGGTTTAGCCGGA-TATAG-ATACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGATTATAGTA-ACTCGCACAAATG
* *
45059654 CCTTCGGGACTTAGCCCGATTATAGTAACTCGGACAATTG
1 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
* * *
45059694 CCTTCGGGACTTAGCCCGGTTATAGTAGCTCGCACAATTG
1 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
* * *
45059734 CCTTCGGGACTTGGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
45059774 CCTTCGGGACTTAGCCCGGA-TATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCC-GATTATAGTAACTCGCACAAATG
* * *
45059814 CCTTCGGGACTTTGCCTGGA-TATAGTAACTCGGACAAATG
1 CCTTCGGGACTTAGCC-CGATTATAGTAACTCGCACAAATG
*
45059854 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGATTAT
45059877 CAATCCGAAT
Statistics
Matches: 196, Mismatches: 22, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
39 17 0.09
40 177 0.90
41 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGATTATAGTAACTCGCACAAATG
Found at i:45059856 original size:120 final size:120
Alignment explanation
Indices: 45059615--45059876 Score: 359
Period size: 120 Copynumber: 2.2 Consensus size: 120
45059605 AAACCAAGTA
** * *
45059615 CCTTCGGGGTTTAG-CCGGATATAG-ATACTCGCTCAAATGCCTTCGGGACTTAGCCCGATTATA
1 CCTTCGGGACTTAGCCCGGTTATAGTA-ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATA
* * * * *
45059678 GTAACTCGGACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAGCTCGCACAATTG
65 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
45059734 CCTTCGGGACTTGGCTCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA-TATA
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GATTATA
* * *
45059798 GTAACTCGCACAAATGCCTTCGGGACTTTGCCTGGATATAGTAACTCGGACAAATG
65 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
45059854 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
45059877 CAATCCGAAT
Statistics
Matches: 124, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
119 11 0.09
120 110 0.89
121 3 0.02
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (120 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATAG
TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:45067369 original size:40 final size:40
Alignment explanation
Indices: 45067314--45067548 Score: 346
Period size: 40 Copynumber: 5.9 Consensus size: 40
45067304 AGATATAGCT
* * * *
45067314 ACTCGCTCAAATGCCTTCGGAACTTAGCCCGTTTATAGAA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
45067354 ACTCGGACAATTGCCTTCGGGACTTAGCCCGGTCATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
45067394 ACTCGCACAATTGCC-TCGGGACTTGGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
45067433 ACTCGCACAAATGCCTTCGGGACTTAGCCTGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* *
45067473 ACTCGCACAAATGCCTTCGGGACTTTGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
45067513 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
45067549 CAATCCGAAT
Statistics
Matches: 176, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 36 0.20
40 140 0.80
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:45067518 original size:119 final size:120
Alignment explanation
Indices: 45067314--45067548 Score: 348
Period size: 119 Copynumber: 2.0 Consensus size: 120
45067304 AGATATAGCT
* ** * *
45067314 ACTCGCTCAAATGCCTTCGGAACTTAGCCCGTTTATAGAAACTCGGACAATTGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGAACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTT
* *
45067379 AGCCCGGTCATAGTAACTCGCACAATTGCC-TCGGGACTTGGCCCGGTTATAGTA
66 AGCCCGGTCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
* * *
45067433 ACTCGCACAAATGCCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGAACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTT
*
45067498 TGCCCGGAT-ATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
66 AGCCCGG-TCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
45067549 CAATCCGAAT
Statistics
Matches: 103, Mismatches: 11, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
119 83 0.81
120 20 0.19
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (120 bp):
ACTCGCACAAATGCCTTCGGAACTTAGCCCGGATATAGAAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGTCATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:45074652 original size:37 final size:37
Alignment explanation
Indices: 45074594--45074786 Score: 350
Period size: 37 Copynumber: 5.2 Consensus size: 37
45074584 GCTCAGACGA
* *
45074594 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
45074631 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
45074668 AATCTCCACACATAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
45074705 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
45074742 AATTTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
45074779 AATCTCCA
1 AATCTCCA
45074787 AGTTTCATGT
Statistics
Matches: 150, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 150 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:45075096 original size:50 final size:48
Alignment explanation
Indices: 45074922--45075106 Score: 291
Period size: 48 Copynumber: 3.8 Consensus size: 48
45074912 GCACATCGCC
45074922 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
45074970 TACATATTTCACACTAGCCATTTGGTTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
*
45075018 TACATATTTCACACTGGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
45075068 TATATATTTCACA-TTGACCATTCGGCTTTACCACATATA
1 TACATATTTCACACTAG-CCATTCGGCTTTACCACATATA
45075107 TGCATGTTCA
Statistics
Matches: 127, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
48 90 0.71
49 2 0.02
50 35 0.28
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:45075157 original size:47 final size:47
Alignment explanation
Indices: 45075076--45075381 Score: 504
Period size: 47 Copynumber: 6.5 Consensus size: 47
45075066 TATATATATT
* * * * * *
45075076 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
45075123 TCACATTGGCCATTCGGCCTTATCACACAAATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
45075170 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
*
45075217 TCACATTGGCCATTTGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
45075264 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
* *
45075311 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
45075358 TCACATTGGCCATTCGGCCTTATC
1 TCACATTGGCCATTCGGCCTTATC
45075382 TCATCTATAC
Statistics
Matches: 243, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 243 1.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
Found at i:45075267 original size:25 final size:25
Alignment explanation
Indices: 45075238--45075315 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 25
45075228 ATTTGGCCTT
45075238 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
* *
45075263 AT--CACAT-TGGCCAT--TCGGCCTT-
1 ATCACACATAT-G-CATGCTC-ACATTC
45075285 ATCACACATATGCATGCTCACATTC
1 ATCACACATATGCATGCTCACATTC
45075310 ATCACA
1 ATCACA
45075316 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 5 0.12
23 12 0.30
24 12 0.30
25 11 0.28
ACGTcount: A:0.29, C:0.32, G:0.10, T:0.28
Consensus pattern (25 bp):
ATCACACATATGCATGCTCACATTC
Found at i:45075290 original size:22 final size:22
Alignment explanation
Indices: 45075263--45075381 Score: 59
Period size: 23 Copynumber: 5.1 Consensus size: 22
45075253 GCTCACATTC
45075263 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
45075285 ATCACACATAT-G-CATGCTC-ACATT
1 AT--CACAT-TGGCCAT--TCGGCCTT
45075309 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * *
45075332 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
45075356 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
45075379 ATC
1 ATC
45075382 TCATCTATAC
Statistics
Matches: 71, Mismatches: 10, Indels: 32
0.63 0.09 0.28
Matches are distributed among these distances:
22 18 0.25
23 19 0.27
24 19 0.27
25 15 0.21
ACGTcount: A:0.24, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:45080728 original size:27 final size:27
Alignment explanation
Indices: 45080561--45080738 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
45080551 TAAATTGTAC
*
45080561 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
45080588 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
45080614 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
45080642 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
45080670 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
45080697 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
45080724 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45080739 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:45080729 original size:82 final size:81
Alignment explanation
Indices: 45080558--45080738 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
45080548 GATTAAATTG
* * * *
45080558 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45080623 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
45080639 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45080703 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
45080721 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45080739 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:45088732 original size:27 final size:27
Alignment explanation
Indices: 45088565--45088742 Score: 119
Period size: 27 Copynumber: 6.6 Consensus size: 27
45088555 TAAATTGTAC
*
45088565 AGCACTAAGTGTGCGA-TTCTACTT-TGT
1 AGCACTAAGTGTGCGAGTT-GA-TTATGT
* ** *
45088592 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * ** **
45088618 ATGCACTAAGAGTGCGAATTGACCATAC
1 A-GCACTAAGTGTGCGAGTTGATTATGT
* * *
45088646 GGCACTAAGTGTGCGAGTCTAACTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
* *
45088674 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
* * *
45088701 GGCACTAAATGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
45088728 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
45088743 GGCTCAATAT
Statistics
Matches: 116, Mismatches: 30, Indels: 10
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.01
27 93 0.80
28 22 0.19
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:45088733 original size:82 final size:81
Alignment explanation
Indices: 45088562--45088742 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
45088552 GATTAAATTG
* * * *
45088562 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
45088627 GAGTGCGAATTGACCA
66 GAGTGCGAATTGACCA
* ** *
45088643 TACGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGAGTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
45088707 AA-ATGTGCGAGTTGATTA
64 AAGA-GTGCGAATTGACCA
* *
45088725 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
45088743 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
81 23 0.28
82 60 0.72
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GAGTGCGAATTGACCA
Found at i:45094837 original size:21 final size:20
Alignment explanation
Indices: 45094807--45094846 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
45094797 TATCTGATTC
*
45094807 TTGTTTGGATGCATTTGAAT
1 TTGTTTGGATGCATCTGAAT
45094827 TTGTTGTGGATGCATCTGAA
1 TTGTT-TGGATGCATCTGAA
45094847 GGTGCTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.20, C:0.07, G:0.28, T:0.45
Consensus pattern (20 bp):
TTGTTTGGATGCATCTGAAT
Found at i:45096851 original size:48 final size:48
Alignment explanation
Indices: 45096782--45097097 Score: 309
Period size: 48 Copynumber: 6.6 Consensus size: 48
45096772 GGGTGAGTTA
* * * * *
45096782 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGATG
* * * *
45096830 CCGATGCTATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGATG
* * * * *
45096878 CCGATGCGATGTCCTAGATATGGTTTTACGCTAGCTCTCATAAT-G-TGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCGAT-G
** * * *
45096926 CCGATGCCATAACCCAGACATGAG-CTTACACTAGCGCACATATCAATG
1 CCGATGCCATGTCCCAGACATG-GTCTTACACTAGCTCTCATATCGATG
* * * *
45096974 ACGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAAC-ATTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGA-TG
* * *
45097022 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCG-TGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAT-G
*
45097070 CCGATGCCATGTCCCAGACGTGGTCTTA
1 CCGATGCCATGTCCCAGACATGGTCTTA
45097098 TATTGGCACA
Statistics
Matches: 217, Mismatches: 42, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
47 6 0.03
48 208 0.96
49 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGATG
Found at i:45097110 original size:144 final size:144
Alignment explanation
Indices: 45096782--45097114 Score: 386
Period size: 144 Copynumber: 2.3 Consensus size: 144
45096772 GGGTGAGTTA
* * * * * * *
45096782 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGATGCCGATGCTATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGACGATGCCATGTCCCAG
* * * * * * *
45096847 ACATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCGATGTCCTAGATATGGTTTTACGCTAG
66 ACATGGTCTTACACTAGCTCTCGACACAATGCCGATGCCATGTCCTAAACATGGTCTTACACTAG
45096912 CTCTCATAATGTGG
131 CTCTCATAATGTGG
** * *
45096926 CCGATGCCATAACCCAGACATGAG-CTTACACTAGCGCACATATCAATGACGATGCCATGTCCCA
1 CCGATGCCATGTCCCAGACATG-GTCTTACACTGGCACACATATCAATGACGATGCCATGTCCCA
* *
45096990 GACATGGTCTTACACTGGCTCTC-ACAACATTGCCGATGCCATGTTCC-AAACATGGTCTTACAC
65 GACATGGTCTTACACTAGCTCTCGAC-ACAATGCCGATGCCATG-TCCTAAACATGGTCTTACAC
*
45097053 TGGCTCTCAT-ATCGTGG
128 TAGCTCTCATAAT-GTGG
* * *
45097070 CCGATGCCATGTCCCAGACGTGGTCTTATATTGGCACACATATCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
45097115 CCCAAATGTC
Statistics
Matches: 157, Mismatches: 27, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
143 4 0.03
144 149 0.95
145 4 0.03
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (144 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGACGATGCCATGTCCCAG
ACATGGTCTTACACTAGCTCTCGACACAATGCCGATGCCATGTCCTAAACATGGTCTTACACTAG
CTCTCATAATGTGG
Found at i:45101549 original size:40 final size:41
Alignment explanation
Indices: 45101502--45101687 Score: 259
Period size: 41 Copynumber: 4.6 Consensus size: 41
45101492 CTTGCACAAG
* * *
45101502 GCCTTCGGGTCTTAGCCCGGATATGGTCAC-TAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
*
45101542 GCCTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
* * *
45101582 GCCTTCGGATCTTAGTCCGGATATAGTCGCTTAGCACCAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
* * *
45101623 GCCTTCGGATCTTAGTCCGGATATAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
*
45101664 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
45101688 CATTCGAGTA
Statistics
Matches: 132, Mismatches: 13, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
40 63 0.48
41 69 0.52
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.26
Consensus pattern (41 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTTAGCACAAAT
Found at i:45101643 original size:81 final size:81
Alignment explanation
Indices: 45101466--45101687 Score: 258
Period size: 81 Copynumber: 2.8 Consensus size: 81
45101456 AATCAAGCAT
* ** * * * *
45101466 CTTCGGGATTTAG-CCGGATATAACCACTT-GCAC-AAGGCCTTCGGGTCTTAGCCCGGATATGG
1 CTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGATCTTAGCCCGGATATAG
*
45101528 TCACTAGCATAAATGC
66 TCACTAGCACAAATGC
* *
45101544 CTTCGGGACTTAGCCCGGATATAGTCGC-TAGCACAAATGCCTTCGGATCTTAGTCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGATCTTAGCCCGGATATAG
* *
45101608 TCGCTTAGCACCAATGC
66 TCAC-TAGCACAAATGC
*
45101625 CTTC-GGATCTTAGTCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGGA-CTTAGCCCGGATAT
1 CTTCGGGA-CTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTC-GGATCTTAGCCCGGATAT
45101688 CATTCGAGTA
Statistics
Matches: 123, Mismatches: 14, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
78 13 0.11
79 15 0.12
80 31 0.25
81 33 0.27
82 28 0.23
83 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (81 bp):
CTTCGGGACTTAGCCCGGATATAGTCGCTTAGCACAAAAGCCTTCGGATCTTAGCCCGGATATAG
TCACTAGCACAAATGC
Found at i:45104212 original size:47 final size:46
Alignment explanation
Indices: 45104140--45104231 Score: 141
Period size: 47 Copynumber: 2.0 Consensus size: 46
45104130 CACAGGCGTG
45104140 TGGTCATCCGTGTGGTAGGCCGTGTGCCCT-AACACGGGAGTGTGATA
1 TGGTCATCCGTGTGGTAGGCCGTGTGCCCTAAACA-GGG-GTGTGATA
* *
45104187 TGGTCATCTGTGTGGTAGGCTGTGTGCCCTAAACAGGGGTGTGAT
1 TGGTCATCCGTGTGGTAGGCCGTGTGCCCTAAACAGGGGTGTGAT
45104232 CGATGAGGCC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
46 7 0.17
47 31 0.74
48 4 0.10
ACGTcount: A:0.16, C:0.18, G:0.37, T:0.28
Consensus pattern (46 bp):
TGGTCATCCGTGTGGTAGGCCGTGTGCCCTAAACAGGGGTGTGATA
Found at i:45104443 original size:17 final size:18
Alignment explanation
Indices: 45104421--45104455 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
45104411 CAATTGGGGC
45104421 AGTGTGGG-CCACACGGG
1 AGTGTGGGCCCACACGGG
45104438 AGTGTGGGCCCACACGGG
1 AGTGTGGGCCCACACGGG
45104456 CAGGCCACAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.17, C:0.26, G:0.46, T:0.11
Consensus pattern (18 bp):
AGTGTGGGCCCACACGGG
Found at i:45114101 original size:62 final size:63
Alignment explanation
Indices: 45114002--45114179 Score: 209
Period size: 62 Copynumber: 2.9 Consensus size: 63
45113992 CGAATGGTCG
* * * * *
45114002 TGTAACTCATTGTTCATGG-AGTAAATCCATACAGCCAGGGACACGGGCATGTGCT-TAGGCCA
1 TGTAACTCACTGTTCATGGTA-TAAAACCACACGGCCAGGGACACGGGCATGTGCTACAGGCCA
* * *
45114064 TGTAACTCACTATTCATGGTATAAAACCACACGGCCAGGGACACGAGCATGTG-TACAGGCCG
1 TGTAACTCACTGTTCATGGTATAAAACCACACGGCCAGGGACACGGGCATGTGCTACAGGCCA
* * * * *
45114126 TGTAACTCACTGTTAATGGTATAAAACCACACGACCAAGGACACAGGCGTGTGC
1 TGTAACTCACTGTTCATGGTATAAAACCACACGGCCAGGGACACGGGCATGTGC
45114180 CCAAGCTGTG
Statistics
Matches: 98, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
61 1 0.01
62 96 0.98
63 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.24, T:0.21
Consensus pattern (63 bp):
TGTAACTCACTGTTCATGGTATAAAACCACACGGCCAGGGACACGGGCATGTGCTACAGGCCA
Found at i:45114196 original size:62 final size:62
Alignment explanation
Indices: 45114000--45114201 Score: 167
Period size: 62 Copynumber: 3.3 Consensus size: 62
45113990 TACGAATGGT
* * * * * * ** *
45114000 CGTGTAACTCATTGTTCATGG-AGTAAATCCATAC-AGCCAGGGACACGGGCATGTGCTTAGGC
1 CGTGTAACTCACTGTTAATGGTA-TAAAACCACACGA-CCAAGGACACGAGCATGTGCACAAGC
* * * * * * *
45114062 CATGTAACTCACTATTCATGGTATAAAACCACACGGCCAGGGACACGAGCATGTGTACAGGC
1 CGTGTAACTCACTGTTAATGGTATAAAACCACACGACCAAGGACACGAGCATGTGCACAAGC
* *
45114124 CGTGTAACTCACTGTTAATGGTATAAAACCACACGACCAAGGACAC-AGGCGTGTGCCCAAGC
1 CGTGTAACTCACTGTTAATGGTATAAAACCACACGACCAAGGACACGA-GCATGTGCACAAGC
* * *
45114186 TGTGTGACTCATTGTT
1 CGTGTAACTCACTGTT
45114202 GATAATTAAA
Statistics
Matches: 115, Mismatches: 22, Indels: 6
0.80 0.15 0.04
Matches are distributed among these distances:
61 1 0.01
62 113 0.98
63 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (62 bp):
CGTGTAACTCACTGTTAATGGTATAAAACCACACGACCAAGGACACGAGCATGTGCACAAGC
Found at i:45116552 original size:13 final size:12
Alignment explanation
Indices: 45116523--45116549 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
45116513 ACTTCTTTCC
45116523 AAATAAAATAAA
1 AAATAAAATAAA
45116535 AAATAAAATAAA
1 AAATAAAATAAA
45116547 AAA
1 AAA
45116550 ATAGTCCCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (12 bp):
AAATAAAATAAA
Found at i:45119798 original size:16 final size:15
Alignment explanation
Indices: 45119777--45119840 Score: 74
Period size: 16 Copynumber: 4.1 Consensus size: 15
45119767 CGGCAAATCC
*
45119777 CGAAATGCTGAAAAG
1 CGAAATGCCGAAAAG
*
45119792 ACGAAATGCTGAAAAG
1 -CGAAATGCCGAAAAG
*
45119808 TCAAAATGCCGAAAAG
1 -CGAAATGCCGAAAAG
45119824 CTGAAATGCCGAAAAG
1 C-GAAATGCCGAAAAG
45119840 C
1 C
45119841 CAAAAGTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
15 1 0.02
16 42 0.98
ACGTcount: A:0.47, C:0.17, G:0.23, T:0.12
Consensus pattern (15 bp):
CGAAATGCCGAAAAG
Found at i:45119822 original size:32 final size:32
Alignment explanation
Indices: 45119779--45119845 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
45119769 GCAAATCCCG
* * *
45119779 AAATGCTGAAAAGAC-GAAATGCTGAAAAGTCA
1 AAATGCCGAAAAG-CTGAAATGCCGAAAAGCCA
45119811 AAATGCCGAAAAGCTGAAATGCCGAAAAGCCA
1 AAATGCCGAAAAGCTGAAATGCCGAAAAGCCA
45119843 AAA
1 AAA
45119846 GTTTATCTAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
31 1 0.03
32 30 0.97
ACGTcount: A:0.51, C:0.16, G:0.21, T:0.12
Consensus pattern (32 bp):
AAATGCCGAAAAGCTGAAATGCCGAAAAGCCA
Found at i:45120137 original size:28 final size:28
Alignment explanation
Indices: 45120057--45120159 Score: 118
Period size: 28 Copynumber: 3.7 Consensus size: 28
45120047 ATTGCATGAC
* * * *
45120057 TATGAATGTGAATGGGCCTGACGAGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
*
45120085 TGTGAAAGTGATTGGGCCTGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
*
45120113 TATGAAAGTGATTGGG-CTCGGTGGGCCA
1 TATGAAAGTGATTGGGCCT-GATGGGCCA
* *
45120141 TATGAATGAGATTGGGCCT
1 TATGAAAGTGATTGGGCCT
45120160 AAAGAGGACA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
27 2 0.03
28 60 0.94
29 2 0.03
ACGTcount: A:0.24, C:0.15, G:0.36, T:0.25
Consensus pattern (28 bp):
TATGAAAGTGATTGGGCCTGATGGGCCA
Found at i:45122401 original size:15 final size:15
Alignment explanation
Indices: 45122381--45122417 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
45122371 TCAAGGGAAG
*
45122381 TATGTGGGTGTGAGT
1 TATGTGGGTGCGAGT
45122396 TATGTGGGTGCGAGT
1 TATGTGGGTGCGAGT
45122411 TATGTGG
1 TATGTGG
45122418 ATGCTAGAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.14, C:0.03, G:0.46, T:0.38
Consensus pattern (15 bp):
TATGTGGGTGCGAGT
Found at i:45124552 original size:16 final size:16
Alignment explanation
Indices: 45124514--45124563 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
45124504 TCGGTAAATC
* *
45124514 CCGAAATGCCGAAGAG
1 CCGAAATGCTGAAAAG
**
45124530 CAAAAATGCTGAAAAG
1 CCGAAATGCTGAAAAG
45124546 CCGAAATGCTGAAAAG
1 CCGAAATGCTGAAAAG
45124562 CC
1 CC
45124564 AGAAGTTTGG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.44, C:0.22, G:0.24, T:0.10
Consensus pattern (16 bp):
CCGAAATGCTGAAAAG
Found at i:45124812 original size:28 final size:28
Alignment explanation
Indices: 45124780--45124910 Score: 172
Period size: 28 Copynumber: 4.7 Consensus size: 28
45124770 ATTGCATGAC
* * *
45124780 TATGAATGTGAGTGGGCCTGACGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
*
45124808 TATGAAAGTGATTGAGCCTGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
*
45124836 TATGAAAGTGATTGGGCCCGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
* *
45124864 TATGAAAGTGATTGGTCCCGATGGGCCA
1 TATGAAAGTGATTGGGCCTGATGGGCCA
* * *
45124892 TATGTATGAGATTGGGCCT
1 TATGAAAGTGATTGGGCCT
45124911 AAAGGGGCTA
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 91 1.00
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.25
Consensus pattern (28 bp):
TATGAAAGTGATTGGGCCTGATGGGCCA
Found at i:45127163 original size:26 final size:24
Alignment explanation
Indices: 45127133--45127193 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 24
45127123 ATAAGTCCTC
*
45127133 AAAAATAAATGAAGGAAAATAAGAAT
1 AAAAATAAATGAAAGAAAA-AA-AAT
*
45127159 AAAAATAAAAATGAAATAAAAAAAAT
1 AAAAAT--AAATGAAAGAAAAAAAAT
45127185 AAAAATAAA
1 AAAAATAAA
45127194 AATGGAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
24 3 0.10
26 15 0.48
27 2 0.06
28 11 0.35
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (24 bp):
AAAAATAAATGAAAGAAAAAAAAT
Found at i:45127165 original size:6 final size:6
Alignment explanation
Indices: 45127148--45127210 Score: 65
Period size: 6 Copynumber: 10.3 Consensus size: 6
45127138 TAAATGAAGG
* * *
45127148 AAAATA AGAATA AAAATA AAAATGA AATAAAA AAAATA AAAATA AAAATG
1 AAAATA AAAATA AAAATA AAAAT-A AA-AATA AAAATA AAAATA AAAATA
*
45127198 GAAAT- AAAATA AA
1 AAAATA AAAATA AA
45127211 TAGACTCAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
5 4 0.09
6 35 0.74
7 6 0.13
8 2 0.04
ACGTcount: A:0.78, C:0.00, G:0.06, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:45127169 original size:32 final size:31
Alignment explanation
Indices: 45127133--45127210 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 31
45127123 ATAAGTCCTC
** *
45127133 AAAAATAAATGAAGGAAAATAAGAATAAAAAT
1 AAAAATAAAT-AAAAAAAATAAAAATAAAAAT
45127165 AAAAATGAAATAAAAAAAATAAAAATAAAAAT
1 AAAAAT-AAATAAAAAAAATAAAAATAAAAAT
**
45127197 GGAAATAAAATAAA
1 AAAAAT-AAATAAA
45127211 TAGACTCAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
32 35 0.90
33 4 0.10
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (31 bp):
AAAAATAAATAAAAAAAATAAAAATAAAAAT
Found at i:45127175 original size:11 final size:10
Alignment explanation
Indices: 45127161--45127193 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
45127151 ATAAGAATAA
45127161 AAATAAAAAT
1 AAATAAAAAT
45127171 GAAATAAAAA-
1 -AAATAAAAAT
45127181 AAATAAAAAT
1 AAATAAAAAT
45127191 AAA
1 AAA
45127194 AATGGAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.43
10 3 0.14
11 9 0.43
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:45127194 original size:26 final size:27
Alignment explanation
Indices: 45127156--45127212 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
45127146 GGAAAATAAG
45127156 AATAAAAATAAAAAT-GAAATAAAAAA
1 AATAAAAATAAAAATGGAAATAAAAAA
*
45127182 AATAAAAATAAAAATGGAAATAAAATA
1 AATAAAAATAAAAATGGAAATAAAAAA
45127209 AATA
1 AATA
45127213 GACTCAAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 15 0.52
27 14 0.48
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (27 bp):
AATAAAAATAAAAATGGAAATAAAAAA
Found at i:45127332 original size:21 final size:21
Alignment explanation
Indices: 45127299--45127338 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
45127289 CGTAAAGTCT
* *
45127299 CATCGATACTGTCAAACCTTG
1 CATCAATAATGTCAAACCTTG
*
45127320 CATCAATAATGTCGAACCT
1 CATCAATAATGTCAAACCT
45127339 CTGAGCACAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (21 bp):
CATCAATAATGTCAAACCTTG
Found at i:45139076 original size:120 final size:121
Alignment explanation
Indices: 45138847--45139136 Score: 442
Period size: 120 Copynumber: 2.4 Consensus size: 121
45138837 TAGTATGATG
* ** *
45138847 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTATAGTATT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTATAGTATC
* *
45138912 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 ATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
45138967 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATA-TTTATAGTA
* *
45139030 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
64 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
*
45139088 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGCTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
45139137 ATATGATTAA
Statistics
Matches: 152, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
118 2 0.01
119 45 0.30
120 60 0.39
121 1 0.01
122 43 0.28
123 1 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (121 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTATAGTATC
ATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:45139115 original size:18 final size:19
Alignment explanation
Indices: 45139080--45139116 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
45139070 ATTATTAAGA
45139080 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
45139099 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
45139117 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:45139346 original size:44 final size:45
Alignment explanation
Indices: 45139281--45139371 Score: 123
Period size: 45 Copynumber: 2.0 Consensus size: 45
45139271 ACCTCTATTC
* * *
45139281 CATTCAACCAAACATAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACATAAGATTAGCTATTACACCTCTAATCCAATA
*
45139325 CATTCAACCAAACAGT-GGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACA-TAAGATTAGCTATTACACCTCTAATCCAATA
45139370 CA
1 CA
45139372 CCTCTAATCC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
44 19 0.46
45 22 0.54
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.29
Consensus pattern (45 bp):
CATTCAACCAAACATAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:45139373 original size:16 final size:16
Alignment explanation
Indices: 45139352--45139418 Score: 125
Period size: 16 Copynumber: 4.1 Consensus size: 16
45139342 GATTAGCTAT
45139352 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
45139368 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
45139385 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
45139401 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
45139417 TA
1 TA
45139419 TAACGAACCA
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:45139394 original size:33 final size:32
Alignment explanation
Indices: 45139352--45139418 Score: 125
Period size: 33 Copynumber: 2.1 Consensus size: 32
45139342 GATTAGCTAT
45139352 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
45139385 TACACCTCTAATCCAATACACCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
45139417 TA
1 TA
45139419 TAACGAACCA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.18
33 28 0.82
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:45140077 original size:25 final size:24
Alignment explanation
Indices: 45140035--45140082 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
45140025 AAAGTGAAAT
45140035 AGTATTAAATGAAAATAAAATAAAA
1 AGTATTAAATGAAAAT-AAATAAAA
*
45140060 AGTACTTAAA-GAATATAAATAAA
1 AGTA-TTAAATGAAAATAAATAAA
45140083 GATAAAAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 9 0.43
26 5 0.24
ACGTcount: A:0.65, C:0.02, G:0.08, T:0.25
Consensus pattern (24 bp):
AGTATTAAATGAAAATAAATAAAA
Found at i:45145514 original size:54 final size:53
Alignment explanation
Indices: 45145456--45145557 Score: 132
Period size: 53 Copynumber: 1.9 Consensus size: 53
45145446 TAATCAATGT
* *
45145456 GATGTGATCATGTGATATCCATATAAGACCATAGCTGGGCTATGGCATCGGAGA
1 GATGTGATCATGTGAT-TCCATATAAGACCATAGCTGAGATATGGCATCGGAGA
* * * * *
45145510 GATGTGATTATGTGCTTTCGTATAAGACCATATCTGAGATATGGCATC
1 GATGTGATCATGTGATTCCATATAAGACCATAGCTGAGATATGGCATC
45145558 AGTGTGATAT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 27 0.66
54 14 0.34
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (53 bp):
GATGTGATCATGTGATTCCATATAAGACCATAGCTGAGATATGGCATCGGAGA
Done.