Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 142 of 290
Found at i:45145553 original size:53 final size:47
Alignment explanation
Indices: 45145477--45145640 Score: 188
Period size: 47 Copynumber: 3.4 Consensus size: 47
45145467 GTGATATCCA
* *
45145477 TATAAGACCATAGCTGGGCTATGGCATCGGAGAGATGTGATTATGTGCTT-TCG
1 TATAAGACCATATCTGGGATATGGCATC----AG-TGTGA-TATGTGCTTCT-G
* *
45145530 TATAAGACCATATCTGAGATATGGCATCAGTGTGATATGTTCTTCTG
1 TATAAGACCATATCTGGGATATGGCATCAGTGTGATATGTGCTTCTG
*
45145577 TATAAGACCATATCTGGGATATGGCATCAGTGTGATATGTG-ATCTG
1 TATAAGACCATATCTGGGATATGGCATCAGTGTGATATGTGCTTCTG
* *
45145623 TGTAAGACCATAGCTGGG
1 TATAAGACCATATCTGGG
45145641 CTATAACTTC
Statistics
Matches: 101, Mismatches: 9, Indels: 9
0.85 0.08 0.08
Matches are distributed among these distances:
46 20 0.20
47 48 0.48
48 6 0.06
49 2 0.02
53 25 0.25
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.32
Consensus pattern (47 bp):
TATAAGACCATATCTGGGATATGGCATCAGTGTGATATGTGCTTCTG
Found at i:45145640 original size:46 final size:46
Alignment explanation
Indices: 45145477--45145667 Score: 175
Period size: 47 Copynumber: 3.9 Consensus size: 46
45145467 GTGATATCCA
* * *
45145477 TATAAGACCATAGCTGGGCTATGGCATCGGAGAGATGTGATTATGTGCTTTCG
1 TATAAGACCATAGCTGGGATATGGCATC----AG-TGTGA-TATGTGATCT-G
* * **
45145530 TATAAGACCATATCTGAGATATGGCATCAGTGTGATATGTTCTTCTG
1 TATAAGACCATAGCTGGGATATGGCATCAGTGTGATATG-TGATCTG
*
45145577 TATAAGACCATATCTGGGATATGGCATCAGTGTGATATGTGATCTG
1 TATAAGACCATAGCTGGGATATGGCATCAGTGTGATATGTGATCTG
* * ** *
45145623 TGTAAGACCATAGCTGGGCTATAACTTCAGTGTGTAATATGTGAT
1 TATAAGACCATAGCTGGGATATGGCATCAGTGTG--ATATGTGAT
45145668 TATGTGCAAG
Statistics
Matches: 120, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
46 33 0.28
47 43 0.36
48 17 0.14
49 2 0.02
53 25 0.21
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.33
Consensus pattern (46 bp):
TATAAGACCATAGCTGGGATATGGCATCAGTGTGATATGTGATCTG
Found at i:45153989 original size:27 final size:27
Alignment explanation
Indices: 45153954--45154065 Score: 113
Period size: 27 Copynumber: 4.1 Consensus size: 27
45153944 AGCATGGCTG
* *
45153954 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
45153980 CCAGATACAGATAATCGTGGCAAAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
* * *
45154008 CCA-AAACAGAAATATATGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
45154035 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
45154062 CCAG
1 CCAG
45154066 GACGCTTCCT
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
26 6 0.09
27 49 0.70
28 15 0.21
ACGTcount: A:0.40, C:0.23, G:0.21, T:0.15
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:45161814 original size:27 final size:26
Alignment explanation
Indices: 45161779--45161890 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
45161769 AGCATGGCTG
** *
45161779 CCAGAACAGATAATGTGATAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
45161805 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
* *
45161833 CCAGAACAGAAATATGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
45161860 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
45161887 CCAG
1 CCAG
45161891 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:45163814 original size:48 final size:48
Alignment explanation
Indices: 45163736--45163923 Score: 195
Period size: 48 Copynumber: 3.9 Consensus size: 48
45163726 TTACAATGTG
* *
45163736 GCCGATGCCATGTCCCAGACATGGTTTTACACTAGCGCACATATCAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATC-ATC
* *
45163784 ACCAATGCCATGTCCCAGACATGGTCTTACAC-AGGTTCTCACA-A-CATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTA-G--CTCACATATCATC
* * * * *
45163832 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCATC
* * * *
45163880 GCCGATGCCATGTCCGAGACGTGGTCTTACACTGGCACACATAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATAT
45163924 AACCCAAATG
Statistics
Matches: 115, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
46 5 0.04
47 4 0.03
48 99 0.86
49 2 0.02
50 5 0.04
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCATC
Found at i:45163905 original size:96 final size:96
Alignment explanation
Indices: 45163736--45163911 Score: 246
Period size: 96 Copynumber: 1.8 Consensus size: 96
45163726 TTACAATGTG
* *
45163736 GCCGATGCCATGTCCCAGACATGGTTTTACACTAGCGCACATATCAATACCAATGCCATGTCCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATACCAATGCCATGTCCCA
45163801 GACATGGTCTTACACAGGTTCTCACAACATC
66 GACATGGTCTTACACAGGTTCTCACAACATC
* * * * * * *
45163832 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCTCATATC-GTGGCCGATGCCATGTCCG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAAT-ACCAATGCCATGTCCC
*
45163896 AGACGTGGTCTTACAC
65 AGACATGGTCTTACAC
45163912 TGGCACACAT
Statistics
Matches: 69, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
95 1 0.01
96 68 0.99
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATACCAATGCCATGTCCCA
GACATGGTCTTACACAGGTTCTCACAACATC
Found at i:45167270 original size:37 final size:37
Alignment explanation
Indices: 45167220--45167325 Score: 176
Period size: 37 Copynumber: 2.9 Consensus size: 37
45167210 CTTTAGCTCA
* * *
45167220 GACAAAATCTCCACATGAAGTTATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
45167257 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
1 GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
*
45167294 GACATAATCTCCACACGTAGTCATCGGGTCTT
1 GACAAAATCTCCACACGTAGTCATCGGGTCTT
45167326 TAGAGCTCGG
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (37 bp):
GACAAAATCTCCACACGTAGTCATCGGGTCTTACCCG
Found at i:45167531 original size:47 final size:47
Alignment explanation
Indices: 45167444--45167946 Score: 844
Period size: 47 Copynumber: 10.6 Consensus size: 47
45167434 CCCTTCGGGA
* * * * * *
45167444 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
45167491 CCTGTCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45167538 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45167585 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45167632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
45167679 CTTATCACATGTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
45167728 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45167775 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
45167822 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45167871 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
45167918 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
45167947 TATTCAAATA
Statistics
Matches: 432, Mismatches: 18, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
47 322 0.75
49 110 0.25
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:45167725 original size:96 final size:94
Alignment explanation
Indices: 45167444--45167946 Score: 844
Period size: 96 Copynumber: 5.3 Consensus size: 94
45167434 CCCTTCGGGA
* * * * * * * * *
45167444 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCGCATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45167509 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
45167538 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45167603 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
45167632 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA--TATATAC
*
45167697 ACTTTCACATTCATCACATCGGCTATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
45167728 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45167793 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
45167822 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
45167887 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
45167918 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
45167947 TATTCAAATA
Statistics
Matches: 392, Mismatches: 13, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
94 186 0.47
96 206 0.53
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:45167751 original size:143 final size:142
Alignment explanation
Indices: 45167444--45167946 Score: 855
Period size: 143 Copynumber: 3.5 Consensus size: 142
45167434 CCCTTCGGGA
* * * * * * * * *
45167444 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCGCATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45167509 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACA-TATATACACTTTCACATTCATCACAT
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTATATACACTTTCACATTCATCACAT
45167573 CGGCCATTAGGC
131 CGGCCATTAGGC
45167585 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45167650 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATGTATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-TATATACACTTTCACATTCATCACA
*
45167715 TCGGCTATTAGGC
130 TCGGCCATTAGGC
45167728 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
45167793 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACAT-TATATACACTTTCACATTCATCACA
* *
45167858 TTGGCCATTCGGC
130 TCGGCCATTAGGC
45167871 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
45167936 ACTTTCACATT
64 ACTTTCACATT
45167947 TATTCAAATA
Statistics
Matches: 344, Mismatches: 14, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
141 94 0.27
143 231 0.67
145 19 0.06
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATTATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:45180328 original size:20 final size:22
Alignment explanation
Indices: 45180292--45180334 Score: 72
Period size: 20 Copynumber: 2.0 Consensus size: 22
45180282 TATGAGAGAG
45180292 AAACGAACGAGAAATGGGCCAA
1 AAACGAACGAGAAATGGGCCAA
45180314 AAACGAA-GA-AAATGGGCCAA
1 AAACGAACGAGAAATGGGCCAA
45180334 A
1 A
45180335 GTACGAAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 12 0.57
21 2 0.10
22 7 0.33
ACGTcount: A:0.53, C:0.16, G:0.26, T:0.05
Consensus pattern (22 bp):
AAACGAACGAGAAATGGGCCAA
Found at i:45183455 original size:31 final size:31
Alignment explanation
Indices: 45183417--45183475 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
45183407 TATGCATCCA
*
45183417 TGTAGACTTATTTAAGTAGATTTAAAAAATT
1 TGTAGACTTACTTAAGTAGATTTAAAAAATT
45183448 TGTAGACTTACTTAAGTAGATTTAAAAA
1 TGTAGACTTACTTAAGTAGATTTAAAAA
45183476 CTTAGTCTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.05, G:0.14, T:0.39
Consensus pattern (31 bp):
TGTAGACTTACTTAAGTAGATTTAAAAAATT
Found at i:45192691 original size:21 final size:21
Alignment explanation
Indices: 45192621--45192690 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
45192611 TGCACACAAG
45192621 CATGTCTCTCAGCCACATGGT
1 CATGTCTCTCAGCCACATGGT
* * *
45192642 CATGTGC-CTCAGCTACACGGG
1 CATGT-CTCTCAGCCACATGGT
*
45192663 CATGTCTTTCAGCCACATGGT
1 CATGTCTCTCAGCCACATGGT
*
45192684 CGTGTCT
1 CATGTCT
45192691 TCCCTACTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 1 0.03
21 37 0.95
22 1 0.03
ACGTcount: A:0.17, C:0.31, G:0.23, T:0.29
Consensus pattern (21 bp):
CATGTCTCTCAGCCACATGGT
Found at i:45194700 original size:48 final size:48
Alignment explanation
Indices: 45194623--45194856 Score: 193
Period size: 48 Copynumber: 4.9 Consensus size: 48
45194613 GGGTACATGT
* * * ** *
45194623 GAGCCAGTGTAAGATCATGTTTGGAACATGGCATCGGCATTGTTATCA
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTAATATGA
* * * * *
45194671 GAGCTAGTGTTAGACCATGTCTGGGACATGGCATCGGCCTCAATATGT
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTAATATGA
* * * **
45194719 GAGCCAGTGTAAGACCATGT-TTGAAGCATGGCATCGACATTGTTATGA
1 GAGCTAGTGTAAGACCATGTCTGGAA-CATGGCATCGGCATTAATATGA
* * * * ** * *
45194767 TAGCTAGTGTAACACCATGTCTAGCACATGGCATC-AAACTCAATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCA-TTAATATGA
* * *
45194815 GAGCTAGTATAAAACCATGTCTGGGACATGGCATCGGCATTA
1 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTA
45194857 TACCCTTTTG
Statistics
Matches: 143, Mismatches: 39, Indels: 8
0.75 0.21 0.04
Matches are distributed among these distances:
47 5 0.03
48 134 0.94
49 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTAATATGA
Found at i:45194784 original size:96 final size:96
Alignment explanation
Indices: 45194619--45194855 Score: 287
Period size: 96 Copynumber: 2.5 Consensus size: 96
45194609 ATTAGGGTAC
* * * *
45194619 ATGTGAGCCAGTGTAAGATCATGTTTGGAACATGGCATCGGCATTGTTATCAGAGCTAGTGTTAG
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATCAGAGCTAGTGTAAC
* *
45194684 ACCATGTCTGGGACATGGCATCGGCCTCAAT
66 ACCATGTCTAGCACATGGCATCGGCCTCAAT
* *
45194715 ATGTGAGCCAGTGTAAGACCATGTTT-GAAGCATGGCATCGACATTGTTATGATAGCTAGTGTAA
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAA-CATGGCATCGACATTGTTATCAGAGCTAGTGTAA
***
45194779 CACCATGTCTAGCACATGGCATCAAACTCAAT
65 CACCATGTCTAGCACATGGCATCGGCCTCAAT
* * * * * * * *
45194811 GTGAGAGCTAGTATAAAACCATGTCTGGGACATGGCATCGGCATT
1 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATT
45194856 ATACCCTTTT
Statistics
Matches: 120, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
95 3 0.03
96 115 0.96
97 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.27
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATCAGAGCTAGTGTAAC
ACCATGTCTAGCACATGGCATCGGCCTCAAT
Found at i:45207262 original size:22 final size:22
Alignment explanation
Indices: 45207223--45207264 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
45207213 GGCTTTAGTA
* **
45207223 ATTCTGTCTACGGTGTTGAGCC
1 ATTCTATCTACGACGTTGAGCC
45207245 ATTCTATCTACGACGTTGAG
1 ATTCTATCTACGACGTTGAG
45207265 TTGTTCTGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (22 bp):
ATTCTATCTACGACGTTGAGCC
Found at i:45207458 original size:28 final size:27
Alignment explanation
Indices: 45207416--45207472 Score: 78
Period size: 28 Copynumber: 2.1 Consensus size: 27
45207406 TCTGATACTA
* * *
45207416 ATTTTGTATTGGGCTTAGGCCCACCTG
1 ATTTTGTATTAGGCTAAGCCCCACCTG
45207443 ATTTTGTTATTAGGCTAAGCCCCACCTG
1 ATTTTG-TATTAGGCTAAGCCCCACCTG
45207471 AT
1 AT
45207473 ACTGTTTCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
ATTTTGTATTAGGCTAAGCCCCACCTG
Found at i:45211372 original size:26 final size:26
Alignment explanation
Indices: 45211343--45211394 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
45211333 CATATTCGGC
45211343 CATAACA-AATATAAATTCTAACATTT
1 CATAACAGAATATAAATT-TAACATTT
* *
45211369 CATAACAGCATATATATTTAACATTT
1 CATAACAGAATATAAATTTAACATTT
45211395 AAATACTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.46, C:0.15, G:0.02, T:0.37
Consensus pattern (26 bp):
CATAACAGAATATAAATTTAACATTT
Found at i:45219289 original size:96 final size:97
Alignment explanation
Indices: 45219116--45219393 Score: 429
Period size: 96 Copynumber: 2.9 Consensus size: 97
45219106 GTTAGGGTAC
* *
45219116 ATGTGAGCCAATGTAAGACCATGTTTGGAACATGACATCGACATTGTTATGAGAGCTAGTGTAAG
1 ATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATAAGAGCTAGTGTAAG
*
45219181 ACCATGTCTGGGACATGGCATTGA-CCTCAAT
66 ACCATGTTTGGGACATGGCATTGAGCCTCAAT
* *
45219212 ATTTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATAAGAGCTAGTGTAAG
1 ATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATAAGAGCTAGTGTAAG
*
45219277 ACTATGTTTGGGACATGGCA-TGAGCCTCAAT
66 ACCATGTTTGGGACATGGCATTGAGCCTCAAT
* * *
45219308 ATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATC-AGCATTTTTATATGTG-TCAGTGTA
1 ATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGA-CATTGTTATAAGAGCT-AGTGTA
45219371 AGACCATGTTTGGGACATGGCAT
64 AGACCATGTTTGGGACATGGCAT
45219394 CGGTATCGAT
Statistics
Matches: 166, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
95 5 0.03
96 161 0.97
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (97 bp):
ATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATAAGAGCTAGTGTAAG
ACCATGTTTGGGACATGGCATTGAGCCTCAAT
Found at i:45219394 original size:48 final size:47
Alignment explanation
Indices: 45219127--45219395 Score: 256
Period size: 48 Copynumber: 5.6 Consensus size: 47
45219117 TGTGAGCCAA
* *
45219127 TGTAAGACCATGTTTGGAACATGACATCGACATTGTTATGA-GAGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGACATTATTAT-ATGAGC-AG
* * * * * * *
45219175 TGTAAGACCATGTCTGGGACATGGCATTGACCTCAATATTTGAGCCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGACATTATTATATGAG-CAG
* *
45219223 TGTAAGACCATGTTTGGAACATGGCATCGACATTGTTATAAGAGCTAG
1 TGTAAGACCATGTTTGGAACATGGCATCGACATTATTATATGAGC-AG
* * * * * * *
45219271 TGTAAGACTATGTTTGGGACATGGCAT-GAGCCTCAATATGTGAGCCAA
1 TGTAAGACCATGTTTGGAACATGGCATCGA-CATTATTATATGAG-CAG
* *
45219319 TGTAAGACCATGTTTGGAACATGGCATC-AGCATTTTTATATGTGTCAG
1 TGTAAGACCATGTTTGGAACATGGCATCGA-CATTATTATATGAG-CAG
*
45219367 TGTAAGACCATGTTTGGGACATGGCATCG
1 TGTAAGACCATGTTTGGAACATGGCATCG
45219396 GTATCGATGT
Statistics
Matches: 176, Mismatches: 38, Indels: 13
0.78 0.17 0.06
Matches are distributed among these distances:
47 3 0.02
48 171 0.97
49 2 0.01
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (47 bp):
TGTAAGACCATGTTTGGAACATGGCATCGACATTATTATATGAGCAG
Found at i:45229738 original size:47 final size:47
Alignment explanation
Indices: 45229627--45229753 Score: 138
Period size: 47 Copynumber: 2.7 Consensus size: 47
45229617 CATTTGTGTG
* *
45229627 AGCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCATATTATGAG
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACCATATGATGAA
* *
45229673 AGCTAGTGTAAGACCATGTCTGGGACATGGTATTGA-CAT-TGA-GACAA
1 AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACCATATGATG--AA
*
45229720 ATGCTAGTGTAAGACATGTTTGGGACAT-GCATCG
1 A-GCTAGTGTAAGACATGTCTGGGACATGGCATCG
45229754 TCTTCGAGAA
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
45 1 0.01
46 19 0.28
47 32 0.46
48 17 0.25
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.27
Consensus pattern (47 bp):
AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACCATATGATGAA
Found at i:45229786 original size:46 final size:44
Alignment explanation
Indices: 45229725--45229897 Score: 152
Period size: 46 Copynumber: 3.7 Consensus size: 44
45229715 GACAAATGCT
* *
45229725 AGTGTAAGACATGTTTGGGACATGCATCGTCTTCGAGAAGTTAGCC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGAAG-T-GCC
* * * * *
45229771 AGTGTAAGACGTGTTTGGGACATGCATTGGCTACGGGATGTGTC
1 AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGAAGTGCC
45229815 AGTGTAAGACAATGTTTGGGACATGGCATCGGC-ACG-GACATGTGAGAGCC
1 AGTGTAAGAC-ATGTTTGGGACAT-GCATCGGCTACGAGA-A-GT----GCC
*
45229865 AGTGTAAGACCATGTCTGGGACATGACATCGGC
1 AGTGTAAGA-CATGTTTGGGACATG-CATCGGC
45229898 CTCGATGATG
Statistics
Matches: 105, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
44 14 0.13
45 16 0.15
46 43 0.41
49 1 0.01
50 30 0.29
51 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTTTGGGACATGCATCGGCTACGAGAAGTGCC
Found at i:45229885 original size:50 final size:49
Alignment explanation
Indices: 45229813--45229944 Score: 144
Period size: 49 Copynumber: 2.7 Consensus size: 49
45229803 ACGGGATGTG
* * *
45229813 TCAGTGTAAGACAATGTTTGGGACATGGCATCGG-CACGGACATG-TGAGAGC
1 TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAC-G--ATGATGA-ACC
* * *
45229864 -CAGTGTAAGACCATGTCTGGGACATGACATCGGCCTCGATGATGATCC
1 TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGATGAACC
*
45229912 TCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 TCAGTGTAAGACCATGTCTGGGACATGGCATCG
45229945 ACACCTCACC
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
48 4 0.06
49 33 0.47
50 31 0.44
51 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (49 bp):
TCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATGATGAACC
Found at i:45231051 original size:21 final size:21
Alignment explanation
Indices: 45231025--45231070 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
45231015 GTGGGACACA
45231025 GGCGTGTTACCCTTCAACATG
1 GGCGTGTTACCCTTCAACATG
*
45231046 GGCGTGTTACCCTTCCACATG
1 GGCGTGTTACCCTTCAACATG
45231067 GGCG
1 GGCG
45231071 GTTTTAAAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.30, G:0.28, T:0.26
Consensus pattern (21 bp):
GGCGTGTTACCCTTCAACATG
Found at i:45235058 original size:43 final size:43
Alignment explanation
Indices: 45234978--45235147 Score: 225
Period size: 43 Copynumber: 4.0 Consensus size: 43
45234968 TCTGAACTAA
* * **
45234978 TTCACCGGCATT-TCGCCTACTAGGCTTGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* * * *
45235020 TTCACCGGCATTATAACCTGCTAGGCCCGAGGCTCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
*
45235063 CTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
* *
45235106 TTCACCGGCATTATAGCCTGCTTGGCCCAAAGCCCGAATATC
1 TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATC
45235148 GCATTTCGAT
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 12 0.11
43 93 0.85
44 5 0.05
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.25
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCAT
Found at i:45238418 original size:26 final size:26
Alignment explanation
Indices: 45238379--45238428 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
45238369 ACAAAAATTC
45238379 CTTCTGAAATTAAATCGT-CACATATA
1 CTTCTGAAATTAAAT-GTACACATATA
45238405 CTTCTGAAGA-TAAATGTACACATA
1 CTTCTGAA-ATTAAATGTACACATA
45238429 GAATGCCCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 2 0.09
26 19 0.86
27 1 0.05
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (26 bp):
CTTCTGAAATTAAATGTACACATATA
Found at i:45241720 original size:43 final size:43
Alignment explanation
Indices: 45241655--45241823 Score: 234
Period size: 43 Copynumber: 3.9 Consensus size: 43
45241645 TGAACTCATC
* **
45241655 CACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCGATATCATTT
1 CACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCATTT
* * * *
45241697 CACCGGCATTATAACCTGCTAGGCCC-AAGGCTCGATATTATCT
1 CACCGGCATTATAGCCTGCTAGGCCCGAA-GCCCGATATCATTT
45241740 CACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCATTT
1 CACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCATTT
*
45241783 CACCGGCATTATAGCCTGCTAGGCCTGAAGCCCGAATATCA
1 CACCGGCATTATAGCCTGCTAGGCCCGAAGCCCG-ATATCA
45241824 CATTTCGATA
Statistics
Matches: 111, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
42 12 0.11
43 91 0.82
44 8 0.07
ACGTcount: A:0.24, C:0.31, G:0.21, T:0.24
Consensus pattern (43 bp):
CACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATATCATTT
Found at i:45248202 original size:46 final size:44
Alignment explanation
Indices: 45248111--45248222 Score: 122
Period size: 46 Copynumber: 2.5 Consensus size: 44
45248101 ATTGAGACGA
* *
45248111 GTGCTAGTGTAAGACATGTCTTGGACATGCATCGGCCTCAGGAT
1 GTGCCAGTGTAAGACATGTCTTGGAAATGCATCGGCCTCAGGAT
45248155 GTAAGCCAGTGTAAGACATGT-TTGGGAAATGCATCGG-CTACTA-GAT
1 GT--GCCAGTGTAAGACATGTCTT-GGAAATGCATCGGCCT-C-AGGAT
*
45248201 GTGTCAGTGTAAGACCATGTCT
1 GTGCCAGTGTAAGA-CATGTCT
45248223 GAGACATGGC
Statistics
Matches: 58, Mismatches: 3, Indels: 12
0.79 0.04 0.16
Matches are distributed among these distances:
44 13 0.22
45 9 0.16
46 35 0.60
47 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (44 bp):
GTGCCAGTGTAAGACATGTCTTGGAAATGCATCGGCCTCAGGAT
Found at i:45248235 original size:46 final size:46
Alignment explanation
Indices: 45248067--45248334 Score: 151
Period size: 49 Copynumber: 5.7 Consensus size: 46
45248057 TTATGAGAGC
* *** * * *
45248067 CAGTGTAAGACCATGTTTGGGACATGGCATTTTCATTGAGACG-AGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAG-GATGTAGT
* *
45248113 GCTAGTGTAAGA-CATGTCTTGGACAT-GCATCGGCCTCAGGATGTAAGC
1 -C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-AGGATGT-AGT
* *
45248161 CAGTGTAAGA-CATGTTTGGGAAAT-GCATCGGCTACTA-GATGT-GT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGC--CTAGGATGTAGT
* * *
45248205 CAGTGTAAGACCATGTCTGAGACATGGCATCAG-C-ACGGATATGAAAAG-
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTA-GG--ATG--TAGT
* * * * *
45248253 CTAATGTAAGACCGTGTCTGGGACATGGCATCGGCCTCGATGAGGATCGT
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCT--AGGATG-TAGT
45248303 CAGTGTAAGACCATGTCTGGGACATGGCATCG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCG
45248335 ACACCTCACC
Statistics
Matches: 172, Mismatches: 28, Indels: 40
0.72 0.12 0.17
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 12 0.07
45 11 0.06
46 51 0.30
47 16 0.09
48 14 0.08
49 60 0.35
50 4 0.02
52 1 0.01
53 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGGATGTAGT
Found at i:45249413 original size:21 final size:21
Alignment explanation
Indices: 45249384--45249424 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45249374 GGCACGGGCG
45249384 TGTTACCCTTCAACACAGGCA
1 TGTTACCCTTCAACACAGGCA
* * *
45249405 TGTTTCCCTTCCACATAGGC
1 TGTTACCCTTCAACACAGGC
45249425 GTGTGCCTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.34, G:0.15, T:0.29
Consensus pattern (21 bp):
TGTTACCCTTCAACACAGGCA
Found at i:45260942 original size:49 final size:47
Alignment explanation
Indices: 45260836--45261118 Score: 422
Period size: 47 Copynumber: 5.9 Consensus size: 47
45260826 TAGTATGGCG
* *
45260836 TAATGGCTGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
*
45260883 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
*
45260932 TAATGACCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
45260981 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
45261028 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
45261075 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
45261119 TCTCGAAGGG
Statistics
Matches: 218, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
47 125 0.57
49 93 0.43
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:45261014 original size:96 final size:94
Alignment explanation
Indices: 45260844--45261118 Score: 415
Period size: 96 Copynumber: 2.9 Consensus size: 94
45260834 CGTAATGGCT
* *
45260844 GATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
45260909 GTGTATATATATGTGATAAGGCCTAATGACC
66 GTG--TATATATGTGATAAGGCCTAATGACC
45260940 GATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 GATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
45261005 AAGTGTATATATGTGATAAGGCCTAATGGCC
64 AAGTGTATATATGTGATAAGGCCTAATGACC
* * * * * * *
45261036 GATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
*
45261101 GTGTATAAATGTGATAAG
66 GTGTATATATGTGATAAG
45261119 TCTCGAAGGG
Statistics
Matches: 166, Mismatches: 11, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
94 54 0.33
96 66 0.40
98 46 0.28
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATGTGATAAGGCCTAATGACC
Found at i:45263012 original size:40 final size:40
Alignment explanation
Indices: 45262499--45263001 Score: 709
Period size: 40 Copynumber: 12.6 Consensus size: 40
45262489 GAGTGAAATG
* *
45262499 TCCGGGCTAAATCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** *
45262539 TCCGGACTAAGTTTCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
45262579 TCCGAGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
45262619 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
45262659 TCCGGACTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
45262699 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * *
45262739 TCCAGGCTAAGTTCCAAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
45262779 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
45262819 TCTGGGCTATGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
45262859 TCCGAGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * *
45262899 TCTGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
45262939 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
45262979 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
45263002 ATCATGCTGG
Statistics
Matches: 414, Mismatches: 49, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 414 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:45266779 original size:49 final size:49
Alignment explanation
Indices: 45266683--45267380 Score: 1201
Period size: 49 Copynumber: 14.6 Consensus size: 49
45266673 GCAATGGCTA
*
45266683 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45266730 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45266779 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45266828 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45266874 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45266923 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45266970 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45267017 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45267066 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45267115 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
45267162 ATGTGATAAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
45267211 AAGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
45267260 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * *
45267307 ATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
45267354 ACGTGATGGATGTGAAAGTGTATATAT
1 ATGTGATGAATGTGAAAGTGTATATAT
45267381 GTGATCAGTC
Statistics
Matches: 628, Mismatches: 12, Indels: 20
0.95 0.02 0.03
Matches are distributed among these distances:
46 24 0.04
47 269 0.43
48 22 0.04
49 313 0.50
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:45267157 original size:145 final size:145
Alignment explanation
Indices: 45266683--45267380 Score: 1271
Period size: 145 Copynumber: 4.8 Consensus size: 145
45266673 GCAATGGCTA
*
45266683 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
45266748 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
66 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
45266813 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
45266828 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
45266892 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
66 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
45266955 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
45266970 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
45267035 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
66 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
45267100 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
*
45267115 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
45267180 TGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATGAATGTGAAAGTGTATATATATGTGAT
66 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
45267245 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
45267260 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* * * * * * *
45267325 TG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATATAT
66 TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
45267381 GTGATCAGTC
Statistics
Matches: 540, Mismatches: 10, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
142 69 0.13
143 120 0.22
144 73 0.14
145 278 0.51
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (145 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
AAGGCCTAATGGCCG
Found at i:45269666 original size:93 final size:93
Alignment explanation
Indices: 45269554--45269724 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
45269544 GCCCATAAGT
* *
45269554 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45269619 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
45269647 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
45269712 CGAGTTCGGATGC
66 CGAGCTCGGATGC
45269725 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:45269721 original size:46 final size:46
Alignment explanation
Indices: 45269546--45269721 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
45269536 TGTAACCCGC
* *
45269546 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
45269592 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
45269638 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
45269685 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
45269722 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:45275667 original size:15 final size:15
Alignment explanation
Indices: 45275643--45275690 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
45275633 AGGAAACCGA
45275643 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
45275658 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
45275672 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
45275688 ATA
1 ATA
45275691 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:45278715 original size:46 final size:45
Alignment explanation
Indices: 45278647--45278817 Score: 195
Period size: 46 Copynumber: 3.7 Consensus size: 45
45278637 AACCCACCCC
*
45278647 TAAGTGAACTCGGACTCCACTCAACGAGCTCTGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTC-GGCATTCGCATCCA
* *
45278693 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTTACA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGC-A--TCCA
* * * *
45278739 TTTCA-CGAACTCGGACTCAACTCAACGAGTTCGACATTCGCATCCA
1 --TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCA
*
45278785 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
45278818 ATGCTCAACC
Statistics
Matches: 105, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
43 1 0.01
44 6 0.06
45 29 0.28
46 36 0.34
47 26 0.25
48 6 0.06
49 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGCATTCGCATCCA
Found at i:45278810 original size:92 final size:93
Alignment explanation
Indices: 45278652--45278821 Score: 297
Period size: 92 Copynumber: 1.8 Consensus size: 93
45278642 ACCCCTAAGT
* *
45278652 GAACTCGGACTCCACTCAACGAGCTCTGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45278717 CGAGCTCGGATGCCTAGTTACATTTCAC
66 CGAGCTCGGATGCCTAGTTACATTTCAC
*
45278745 GAACTCGGACTCAACTCAACGAGTTC-GACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
45278809 CGAGTTCGGATGC
66 CGAGCTCGGATGC
45278822 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
92 49 0.67
93 24 0.33
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCTGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATTTCAC
Found at i:45283745 original size:23 final size:23
Alignment explanation
Indices: 45283705--45283750 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
45283695 ATGAATATAT
* *
45283705 AGTTGTTAGTGTTAATGGTATTG
1 AGTTGTTAATGTTAATGGAATTG
* *
45283728 AGTTGTTAATTTTGATGGAATTG
1 AGTTGTTAATGTTAATGGAATTG
45283751 CCTATTTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (23 bp):
AGTTGTTAATGTTAATGGAATTG
Found at i:45283879 original size:9 final size:9
Alignment explanation
Indices: 45283865--45283892 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
45283855 TACGTAGTAA
45283865 TATGCAAAT
1 TATGCAAAT
45283874 TATGCAAAT
1 TATGCAAAT
45283883 TATGCAAAT
1 TATGCAAAT
45283892 T
1 T
45283893 CTGTGTGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.36
Consensus pattern (9 bp):
TATGCAAAT
Found at i:45290512 original size:14 final size:14
Alignment explanation
Indices: 45290493--45290520 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45290483 GGTCTAGTCA
45290493 ATTAGTTAAAGTTT
1 ATTAGTTAAAGTTT
45290507 ATTAGTTAAAGTTT
1 ATTAGTTAAAGTTT
45290521 CCCCTGTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (14 bp):
ATTAGTTAAAGTTT
Found at i:45291630 original size:53 final size:54
Alignment explanation
Indices: 45291562--45291755 Score: 232
Period size: 53 Copynumber: 3.6 Consensus size: 54
45291552 CTTAACATTA
** * *
45291562 CCATGTCTTGACATGGTCTTATGTGGTATCCATT-CCTTACGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTAAGAACTCACCAATG
* * * *
45291615 CCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTCATCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTA-AG-AACTCACCAATG
* *
45291670 CCATGTCTTAACATGGTCTTACATGGTAT-CTTTGCCTTATGAACTCACCAATG
1 CCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTAAGAACTCACCAATG
* * *
45291723 CCATGACTTGGCATGGTCTTACATGATATCCTT
1 CCATGTCTTGACATGGTCTTACATGGTATCCTT
45291756 ATCTTACCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 9
0.81 0.12 0.06
Matches are distributed among these distances:
52 4 0.03
53 64 0.54
54 5 0.04
55 45 0.38
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CCATGTCTTGACATGGTCTTACATGGTATCCTTTGCCTTAAGAACTCACCAATG
Found at i:45291673 original size:55 final size:53
Alignment explanation
Indices: 45291596--45291747 Score: 214
Period size: 55 Copynumber: 2.8 Consensus size: 53
45291586 GGTATCCATT
* *
45291596 CCTTACGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGACCTTTG
1 CCTTATGAACTCACCAATGCCATGACTTGGCATGGTCTTACATGGGACCTTTG
* * ** * *
45291649 CCTTATAGTAACTCATCAATGCCATGTCTTAACATGGTCTTACATGGTATCTTTG
1 CCTTAT-G-AACTCACCAATGCCATGACTTGGCATGGTCTTACATGGGACCTTTG
45291704 CCTTATGAACTCACCAATGCCATGACTTGGCATGGTCTTACATG
1 CCTTATGAACTCACCAATGCCATGACTTGGCATGGTCTTACATG
45291748 ATATCCTTAT
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
53 38 0.44
54 2 0.02
55 46 0.53
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (53 bp):
CCTTATGAACTCACCAATGCCATGACTTGGCATGGTCTTACATGGGACCTTTG
Found at i:45291789 original size:47 final size:47
Alignment explanation
Indices: 45291734--45291855 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
45291724 CATGACTTGG
* *
45291734 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
45291781 CATGGTCTTACATGGTATCATTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
45291828 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
45291856 GTGCCAATGC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:45292043 original size:44 final size:44
Alignment explanation
Indices: 45291993--45292078 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
45291983 TATCCTTAAT
* *
45291993 CGTCAATTCCTT-CTTAAATGCCATGTTATGAA-CATGGACTTTTC
1 CGTCAATT-CTTCCTTAAATGCCATGGTA-CAACCATGGACTTTTC
*
45292037 CGTCAATTCTTCCTTAATTGCCATGGTACAACCATGGACTTT
1 CGTCAATTCTTCCTTAAATGCCATGGTACAACCATGGACTTT
45292079 GAGATATCAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 5 0.14
44 32 0.86
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (44 bp):
CGTCAATTCTTCCTTAAATGCCATGGTACAACCATGGACTTTTC
Found at i:45292650 original size:31 final size:30
Alignment explanation
Indices: 45292614--45292674 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
45292604 TCCCTAACTC
45292614 AAACTTTGGGAAAATTACAATTTTGCCCCTA
1 AAACTTT-GGAAAATTACAATTTTGCCCCTA
** * *
45292645 AAACTTTTTAGAATTACGATTTTGCCCCTA
1 AAACTTTGGAAAATTACAATTTTGCCCCTA
45292675 GGCTCAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 19 0.73
31 7 0.27
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAATTACAATTTTGCCCCTA
Found at i:45297561 original size:40 final size:40
Alignment explanation
Indices: 45297477--45297701 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
45297467 TTGAATGATG
* * * *
45297477 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
45297517 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45297557 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45297596 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45297636 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45297677 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45297702 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 121 0.74
41 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45297719 original size:80 final size:80
Alignment explanation
Indices: 45297477--45297734 Score: 233
Period size: 80 Copynumber: 3.2 Consensus size: 80
45297467 TTGAATGATG
* * * * * * *
45297477 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGCTAAG-TCCCGAAGGCAT
*** *
45297540 TTGTGTGAGAT-ACTAAT
64 TTGAACGAG-TGACTAAA
* *
45297557 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
** *
45297621 GTGCGAGTTACTAAA
66 GAACGAGTGACTAAA
* *
45297636 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATT
*
45297700 TGAACGAG-GAGCTATA
65 TGAACGAGTGA-CTAAA
* *
45297716 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45297735 TACGTGATTT
Statistics
Matches: 153, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.01
79 73 0.48
80 76 0.50
81 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
GAACGAGTGACTAAA
Found at i:45297723 original size:119 final size:119
Alignment explanation
Indices: 45297477--45297734 Score: 274
Period size: 119 Copynumber: 2.2 Consensus size: 119
45297467 TTGAATGATG
* *
45297477 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * ** *
45297542 GTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
45297596 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
45297659 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
45297716 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45297735 TACGTGATTT
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 82 0.71
120 31 0.27
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:45304755 original size:40 final size:40
Alignment explanation
Indices: 45304671--45304895 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
45304661 TTGAATGATG
* * * *
45304671 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
45304711 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45304751 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45304790 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45304830 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45304871 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45304896 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 33 0.20
40 121 0.74
41 9 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45304913 original size:80 final size:79
Alignment explanation
Indices: 45304710--45304918 Score: 221
Period size: 80 Copynumber: 2.6 Consensus size: 79
45304700 AAGTGACCAT
* *** * *
45304710 ATCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGAT-ACTAATTCCGGGCTAAGCCCGAAGGCAT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGAACGAG-TGACTAAATCCGGGTTAAGCCCGAAGGCAT
45304773 TGGTGCGAGTTACTAA
64 TGGTGCGAGTTACTAA
* ** *
45304789 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAG-CCCGAAGGCATT
*
45304854 TGTGCGAGTTACTATA
65 GGTGCGAGTTACTA-A
* *
45304870 A-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
45304919 ATTATGAAGG
Statistics
Matches: 113, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.02
79 50 0.44
80 59 0.52
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGCCCGAAGGCATTG
GTGCGAGTTACTAA
Found at i:45304917 original size:119 final size:119
Alignment explanation
Indices: 45304671--45304918 Score: 272
Period size: 119 Copynumber: 2.1 Consensus size: 119
45304661 TTGAATGATG
* *
45304671 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* * ** *
45304736 GTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
45304790 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
45304853 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
45304910 TCC-GGTTAA
1 TCCGGGTTAA
45304919 ATTATGAAGG
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 74 0.69
120 31 0.29
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:45312071 original size:32 final size:32
Alignment explanation
Indices: 45312035--45312099 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
45312025 GTGATATGTG
45312035 TTTGTACATTGAGTTTAGTTGATGATTTTGGA
1 TTTGTACATTGAGTTTAGTTGATGATTTTGGA
45312067 TTTGTACATTGAGTTTAGTTGATGATTTTGGA
1 TTTGTACATTGAGTTTAGTTGATGATTTTGGA
45312099 T
1 T
45312100 ATGGCATGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.22, C:0.03, G:0.25, T:0.51
Consensus pattern (32 bp):
TTTGTACATTGAGTTTAGTTGATGATTTTGGA
Found at i:45317278 original size:55 final size:56
Alignment explanation
Indices: 45317213--45317326 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
45317203 AGCATGGCTG
*
45317213 CCAGATACAG-AAGATGTGACAGAGT-CACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGAAAGATGTGACAGA-TCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* *
45317269 CCAGA-ACAGAAATATGTGGCAGATCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGAAAGATGTGACAGATCCACCAGAACAGATAATTTGTGGCATAGCCA
45317324 CCA
1 CCA
45317327 AGACGCTTCC
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
54 1 0.02
55 28 0.54
56 23 0.44
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (56 bp):
CCAGATACAGAAAGATGTGACAGATCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:45317289 original size:27 final size:28
Alignment explanation
Indices: 45317238--45317326 Score: 112
Period size: 27 Copynumber: 3.2 Consensus size: 28
45317228 GTGACAGAGT
*
45317238 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
45317267 CACCAGAACAGA-AATATGTGGCAGAT-C
1 CACCAGAACAGATAATTTGTGGCAG-TGC
45317294 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
45317322 CACCA
1 CACCA
45317327 AGACGCTTCC
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
26 1 0.02
27 23 0.43
28 22 0.42
29 7 0.13
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:45317480 original size:28 final size:28
Alignment explanation
Indices: 45317433--45317497 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
45317423 AAATTAACCC
*
45317433 TAGGGGTATAGAGGTCATTTTACATACA
1 TAGGGGTATAGAGGTAATTTTACATACA
*
45317461 TAGGGGTATA-AGGGTAATTTTGCATACA
1 TAGGGGTATAGA-GGTAATTTTACATACA
45317489 TAGGGGTAT
1 TAGGGGTAT
45317498 TCTAGTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 1 0.03
28 33 0.97
ACGTcount: A:0.31, C:0.08, G:0.29, T:0.32
Consensus pattern (28 bp):
TAGGGGTATAGAGGTAATTTTACATACA
Found at i:45325230 original size:14 final size:14
Alignment explanation
Indices: 45325211--45325237 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45325201 AGACACGGTC
45325211 GTGTGGTGGTGTGA
1 GTGTGGTGGTGTGA
45325225 GTGTGGTGGTGTG
1 GTGTGGTGGTGTG
45325238 GGCTACACGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.00, G:0.59, T:0.37
Consensus pattern (14 bp):
GTGTGGTGGTGTGA
Found at i:45327934 original size:43 final size:43
Alignment explanation
Indices: 45327827--45327969 Score: 132
Period size: 43 Copynumber: 3.3 Consensus size: 43
45327817 CCAACGTCTT
* * *
45327827 AGACGTGGTCTTAC-ATGT-AATCAAATATCGATGCCACTATCCC
1 AGACATGGTCTTACGA-GTAAATCAAATA-CGATGCCAATGTCCC
* * * *
45327870 AAACAGGGTCTTACGCG-AAATCAAATACGATGCCAATGTTCC
1 AGACATGGTCTTACGAGTAAATCAAATACGATGCCAATGTCCC
*
45327912 AGACATGGTCTTACGAGTAAATCATAAGT-CGATGCCAACGTCCC
1 AGACATGGTCTTACGAGTAAATCA-AA-TACGATGCCAATGTCCC
**
45327956 AGATGTGGTCTTAC
1 AGACATGGTCTTAC
45327970 ACGAAAACAC
Statistics
Matches: 81, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
42 26 0.32
43 27 0.33
44 27 0.33
45 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (43 bp):
AGACATGGTCTTACGAGTAAATCAAATACGATGCCAATGTCCC
Found at i:45329774 original size:40 final size:40
Alignment explanation
Indices: 45329722--45329953 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
45329712 ATAACCACAA
* * * *
45329722 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
45329762 GCACGAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45329802 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45329842 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA--TCAACTC
*
45329884 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45329924 GCATAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
45329954 GTATTCAAAT
Statistics
Matches: 178, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 138 0.78
42 40 0.22
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45329913 original size:122 final size:120
Alignment explanation
Indices: 45329722--45329953 Score: 392
Period size: 122 Copynumber: 1.9 Consensus size: 120
45329712 ATAACCACAA
* * *
45329722 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
45329787 CGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45329842 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATGTCAACTCGCACAAATGCCTTCGGGTCTTAG
1 GCACAAATGCCTTCGGGTCTTAACCCGGATATA-G-CAACTCGCACAAATGCCTTCGGGTCTTAG
*
45329907 CCCGGATATATCAACTTGCATAAATGCCTTCGGGTCTTAGCCCGGAT
64 CCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
45329954 GTATTCAAAT
Statistics
Matches: 104, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
120 30 0.29
121 1 0.01
122 73 0.70
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45329917 original size:82 final size:81
Alignment explanation
Indices: 45329722--45329961 Score: 383
Period size: 82 Copynumber: 3.0 Consensus size: 81
45329712 ATAACCACAA
* * * *
45329722 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
45329787 CGGATATA-TCAACTT
66 CGGATATATTCAACTC
45329802 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
45329867 CGGATATATGTCAACTC
66 CGGATATAT-TCAACTC
* * *
45329884 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCATAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
45329949 CGGATGTATTCAA
66 CGGATATATTCAA
45329962 ATGCTCATGC
Statistics
Matches: 149, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
80 69 0.46
81 4 0.03
82 76 0.51
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (81 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATTCAACTC
Found at i:45338210 original size:40 final size:40
Alignment explanation
Indices: 45338165--45338392 Score: 379
Period size: 40 Copynumber: 5.8 Consensus size: 40
45338155 ATAACCACAA
* * * *
45338165 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45338205 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45338245 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45338285 GCACAAATGCCTTCGGGTCTTAGCCCGG--ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
*
45338323 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
45338363 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT
45338393 GTATTCAAAT
Statistics
Matches: 177, Mismatches: 9, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
38 38 0.21
40 139 0.79
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45338351 original size:118 final size:120
Alignment explanation
Indices: 45338165--45338392 Score: 406
Period size: 118 Copynumber: 1.9 Consensus size: 120
45338155 ATAACCACAA
*
45338165 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
45338230 CGGATATATCAACTTGCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTC
66 CGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
45338285 GCACAAATGCCTTCGGGTCTTAGCCC-GG-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
45338348 CGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
66 CGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGAT
45338393 GTATTCAAAT
Statistics
Matches: 104, Mismatches: 4, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
118 78 0.75
119 2 0.02
120 24 0.23
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (120 bp):
GCACAAATGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:45338352 original size:78 final size:78
Alignment explanation
Indices: 45338165--45338392 Score: 384
Period size: 78 Copynumber: 2.9 Consensus size: 78
45338155 ATAACCACAA
* * *
45338165 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
*
45338230 CGGATATATCAACTT
66 CGG--ATATCAACTC
45338245 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
45338310 CGGATATCAACTC
66 CGGATATCAACTC
* *
45338323 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTCTTAGCC
1 GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
45338388 CGGAT
66 CGGAT
45338393 GTATTCAAAT
Statistics
Matches: 142, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
78 77 0.54
80 65 0.46
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (78 bp):
GCACAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTTAGCC
CGGATATCAACTC
Found at i:45346698 original size:35 final size:39
Alignment explanation
Indices: 45346584--45346769 Score: 139
Period size: 35 Copynumber: 4.8 Consensus size: 39
45346574 CCGGGTATAG
*
45346584 CAACTCGCACAAATGCCTTGGGTCTTAGCCGGATAT-A-T
1 CAACTCGCACAAATGCCTTCGGTC-TAGCCGGATATAACT
*
45346622 --ACTTGCAC-AATGCTCTTCGGGTCTTAGCCCGGA-AT---T
1 CAACTCGCACAAATGC-CTTC-GGTC-TAG-CCGGATATAACT
*
45346658 -AACTCGCACAAATG-CTTCGGTCTAG-CGGATAT-ATT
1 CAACTCGCACAAATGCCTTCGGTCTAGCCGGATATAACT
45346693 C-ACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAACT
1 CAACTCGCACAAATGCCTTC-GGTC-TAG-CCGGATATAACT
*
45346734 CAACTTGCACAAAATGCCTTCGGTCTTAGCCCGGAT
1 CAACTCGCAC-AAATGCCTTCGGTC-TAG-CCGGAT
45346770 GTATTCAATG
Statistics
Matches: 126, Mismatches: 5, Indels: 30
0.78 0.03 0.19
Matches are distributed among these distances:
32 4 0.03
33 2 0.02
34 3 0.02
35 23 0.18
36 19 0.15
37 21 0.17
38 12 0.10
40 7 0.06
41 3 0.02
42 22 0.17
43 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (39 bp):
CAACTCGCACAAATGCCTTCGGTCTAGCCGGATATAACT
Found at i:45346716 original size:72 final size:73
Alignment explanation
Indices: 45346585--45346769 Score: 218
Period size: 72 Copynumber: 2.5 Consensus size: 73
45346575 CGGGTATAGC
* *
45346585 AACTCGCACAAATGCCTTGGGTCTTAGCCGGATATATACTTGCACAATGCTCTTCGGGTCTTAGC
1 AACTCGCACAAATGCCTTCGGTCTTAGCCGGATATATACTCGCACAATGCTCTTCGGGTCTTAGC
45346650 CCGGA-ATT
66 CCGGATA-T
45346658 AACTCGCACAAATG-CTTCGGTC-TAG-CGGATATATTCACTCGCACAAATGC-CTTCGGGTCTT
1 AACTCGCACAAATGCCTTCGGTCTTAGCCGGATATA-T-ACTCGCAC-AATGCTCTTCGGGTCTT
45346719 AGCCCGGATAT
63 AGCCCGGATAT
45346730 AACTCAACTTGCACAAAATGCCTTCGGTCTTAGCCCGGAT
1 AACT---C--GCAC-AAATGCCTTCGGTCTTAG-CCGGAT
45346770 GTATTCAATG
Statistics
Matches: 96, Mismatches: 2, Indels: 19
0.82 0.02 0.16
Matches are distributed among these distances:
70 8 0.08
71 4 0.04
72 38 0.40
73 20 0.21
75 1 0.01
77 4 0.04
78 5 0.05
79 8 0.08
80 3 0.03
82 5 0.05
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.27
Consensus pattern (73 bp):
AACTCGCACAAATGCCTTCGGTCTTAGCCGGATATATACTCGCACAATGCTCTTCGGGTCTTAGC
CCGGATAT
Found at i:45351978 original size:39 final size:41
Alignment explanation
Indices: 45351919--45351996 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 41
45351909 ACCAGCACGG
*
45351919 AATGCCTTCGGGACTTAACCCGGTTA-ATAATAACCCAGAC
1 AATGCCTTCGGGACTTAACCCGGTAATATAATAACCCAGAC
45351959 AATGCCTTC-GGACTTAACCCGGTAATATAATAACCCAG
1 AATGCCTTCGGGACTTAACCCGGTAATATAATAACCCAG
45351997 GAATGCTATG
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
39 15 0.42
40 21 0.58
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (41 bp):
AATGCCTTCGGGACTTAACCCGGTAATATAATAACCCAGAC
Found at i:45352002 original size:39 final size:39
Alignment explanation
Indices: 45351917--45352002 Score: 129
Period size: 39 Copynumber: 2.2 Consensus size: 39
45351907 CAACCAGCAC
*
45351917 GGAATGCCTTCGGGACTTAACCCGGTTAATAATAACCCA
1 GGAATGCCTTCGGGACTTAACCCGGTAAATAATAACCCA
*
45351956 GACAATGCCTTC-GGACTTAACCCGGTAATATAATAACCCA
1 G-GAATGCCTTCGGGACTTAACCCGGTAA-ATAATAACCCA
45351996 GGAATGC
1 GGAATGC
45352003 TATGCACATA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
39 21 0.50
40 21 0.50
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.22
Consensus pattern (39 bp):
GGAATGCCTTCGGGACTTAACCCGGTAAATAATAACCCA
Found at i:45360382 original size:40 final size:40
Alignment explanation
Indices: 45360318--45360412 Score: 154
Period size: 40 Copynumber: 2.4 Consensus size: 40
45360308 CGGATGTAAC
*
45360318 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
45360358 AACCCGTACGAATGCCTTCTGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
45360398 AACCCGCAGGAATGC
1 AACCCGCACGAATGC
45360413 TATGCACATA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:45371698 original size:19 final size:19
Alignment explanation
Indices: 45371669--45371706 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
45371659 CATAATGCTA
45371669 ATTTGGTATCAA-ATTTTT
1 ATTTGGTATCAATATTTTT
45371687 ATTTGAGTATCAATATTTTT
1 ATTTG-GTATCAATATTTTT
45371707 TCATAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 7 0.39
20 6 0.33
ACGTcount: A:0.29, C:0.05, G:0.11, T:0.55
Consensus pattern (19 bp):
ATTTGGTATCAATATTTTT
Found at i:45372857 original size:14 final size:14
Alignment explanation
Indices: 45372832--45372871 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
45372822 ATTTAATAAA
* *
45372832 TAAAAATAAAAATCC
1 TAAAACTAAAAGT-C
45372847 TAAAACTAAAAGTC
1 TAAAACTAAAAGTC
45372861 TAAAACTAAAA
1 TAAAACTAAAA
45372872 CACACGACAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.65, C:0.12, G:0.03, T:0.20
Consensus pattern (14 bp):
TAAAACTAAAAGTC
Found at i:45373287 original size:16 final size:18
Alignment explanation
Indices: 45373252--45373294 Score: 63
Period size: 16 Copynumber: 2.5 Consensus size: 18
45373242 GTAAATGGGA
45373252 TGGTTTATGGAAAGCTGC
1 TGGTTTATGGAAAGCTGC
*
45373270 TGGTTT-TGGGAA-CTGC
1 TGGTTTATGGAAAGCTGC
45373286 TGGTTTATG
1 TGGTTTATG
45373295 AGAGTGCTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 10 0.43
17 7 0.30
18 6 0.26
ACGTcount: A:0.16, C:0.09, G:0.35, T:0.40
Consensus pattern (18 bp):
TGGTTTATGGAAAGCTGC
Found at i:45380257 original size:28 final size:28
Alignment explanation
Indices: 45380217--45380285 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
45380207 TATAGTAAGT
*
45380217 TCGCACACTTAGTGCT-TAATAATCAAAC
1 TCGCACACTTAGTGCTAT-ACAATCAAAC
*
45380245 TCGCACACTTAGTGCTATACAATTAAAC
1 TCGCACACTTAGTGCTATACAATCAAAC
45380273 TCGCACACTTAGT
1 TCGCACACTTAGT
45380286 ACCAATCTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 37 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (28 bp):
TCGCACACTTAGTGCTATACAATCAAAC
Found at i:45380591 original size:15 final size:16
Alignment explanation
Indices: 45380571--45380612 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
45380561 ATCTATTCAA
*
45380571 ATTCAAATTAAGTT-C
1 ATTCAAATTAAATTCC
*
45380586 ATTCAAATAAAATTCC
1 ATTCAAATTAAATTCC
45380602 ATTC-AATTAAA
1 ATTCAAATTAAA
45380613 CCCCAAAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.48, C:0.14, G:0.02, T:0.36
Consensus pattern (16 bp):
ATTCAAATTAAATTCC
Found at i:45383024 original size:24 final size:24
Alignment explanation
Indices: 45382997--45383045 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
45382987 ACACAAATGA
45382997 CCCAAATGTCACGGCATAAATATC
1 CCCAAATGTCACGGCATAAATATC
45383021 CCCAAATGTCACGGCATAAATATC
1 CCCAAATGTCACGGCATAAATATC
45383045 C
1 C
45383046 AGTTATTTCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.31, G:0.12, T:0.20
Consensus pattern (24 bp):
CCCAAATGTCACGGCATAAATATC
Found at i:45390483 original size:50 final size:49
Alignment explanation
Indices: 45390359--45390579 Score: 183
Period size: 49 Copynumber: 4.6 Consensus size: 49
45390349 TGAGGTGTCG
***
45390359 ATGCCATGTCCCAGACATGGTCTTACACTAACGATCATCATCGAGGGTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACGATCATCATCGAGGCCA
* **
45390408 ATGCCATGTCCCAGACATGGTCTTACACTATCTCTCA-CATATTCG-GGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAACGATCATC--A-TCGAGGCCA
* *
45390458 ATGCCATGTCCCAGACATGGTCTTACATTGAC-A-CATC-TCGTA-GCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAACGATCATCATCG-AGGCCA
* ** * * *
45390504 ATG-CATGTCCCAGACAT-GTCTTACATTGGC-ACTCGTC-TCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTAACGA-TCATCATCGAGGCCA
* *
45390550 ATGCCATGTCCCATACATGGTCTTAAACTA
1 ATGCCATGTCCCAGACATGGTCTTACACTA
45390580 GCTCTCATAA
Statistics
Matches: 144, Mismatches: 17, Indels: 23
0.78 0.09 0.12
Matches are distributed among these distances:
44 13 0.09
45 18 0.12
46 19 0.13
47 13 0.09
48 11 0.08
49 35 0.24
50 32 0.22
51 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACGATCATCATCGAGGCCA
Found at i:45390519 original size:45 final size:47
Alignment explanation
Indices: 45390454--45390574 Score: 162
Period size: 44 Copynumber: 2.6 Consensus size: 47
45390444 ACATATTCGG
45390454 GCCAATGCCATGTCCCAGACATGGTCTTACATTGACACATC-TCGT-A-
1 GCCAATGCCATGTCCCAGACATGGTCTTACATTGACAC-TCGTC-TAAT
*
45390500 GCCAATG-CATGTCCCAGACAT-GTCTTACATTGGCACTCGTCTCAAT
1 GCCAATGCCATGTCCCAGACATGGTCTTACATTGACACTCGTCT-AAT
*
45390546 GCCAATGCCATGTCCCATACATGGTCTTA
1 GCCAATGCCATGTCCCAGACATGGTCTTA
45390575 AACTAGCTCT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
43 3 0.04
44 16 0.24
45 15 0.22
46 14 0.21
47 13 0.19
48 6 0.09
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (47 bp):
GCCAATGCCATGTCCCAGACATGGTCTTACATTGACACTCGTCTAAT
Found at i:45390550 original size:46 final size:46
Alignment explanation
Indices: 45390359--45390574 Score: 174
Period size: 50 Copynumber: 4.5 Consensus size: 46
45390349 TGAGGTGTCG
* * ***
45390359 ATGCCATGTCCCAGACATGGTCTTACACTAACGATCATCATCG-AGGGTG
1 ATGCCATGTCCCAGACATGGTCTTACATTGAC-A-CATC-TCGTA-GCCA
** * *
45390408 ATGCCATGTCCCAGACATGGTCTTACACTATCTCTCACATATTCG-GGCCA
1 ATGCCATGTCCCAGACATGGTCTT--AC-AT-TGACACAT-CTCGTAGCCA
45390458 ATGCCATGTCCCAGACATGGTCTTACATTGACACATCTCGTAGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATTGACACATCTCGTAGCCA
*
45390504 ATG-CATGTCCCAGACAT-GTCTTACATTGGCAC-TCGTC-TCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATTGACACATC-TCGT--A-GCCA
*
45390550 ATGCCATGTCCCATACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
45390575 AACTAGCTCT
Statistics
Matches: 141, Mismatches: 14, Indels: 25
0.78 0.08 0.14
Matches are distributed among these distances:
43 3 0.02
44 16 0.11
45 18 0.13
46 20 0.14
47 15 0.11
48 8 0.06
49 24 0.17
50 25 0.18
51 8 0.06
52 2 0.01
53 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
ATGCCATGTCCCAGACATGGTCTTACATTGACACATCTCGTAGCCA
Found at i:45390617 original size:24 final size:25
Alignment explanation
Indices: 45390567--45390618 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
45390557 GTCCCATACA
45390567 TGGTCTTAAACTAGCTCTCATAATG
1 TGGTCTTAAACTAGCTCTCATAATG
*
45390592 TGGTCTTAAACTATCTC-CATAATG
1 TGGTCTTAAACTAGCTCTCATAATG
45390616 TGG
1 TGG
45390619 CCGATGCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (25 bp):
TGGTCTTAAACTAGCTCTCATAATG
Found at i:45394539 original size:35 final size:35
Alignment explanation
Indices: 45394488--45394560 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
45394478 AACCCTATTT
45394488 TTAAATTACCTAATCATACCATAGATTTGGCATAC
1 TTAAATTACCTAATCATACCATAGATTTGGCATAC
*
45394523 TTAACTTACCTAATCATACCATAGATTTGGCATAC
1 TTAAATTACCTAATCATACCATAGATTTGGCATAC
45394558 TTA
1 TTA
45394561 TTAACCATGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (35 bp):
TTAAATTACCTAATCATACCATAGATTTGGCATAC
Found at i:45399932 original size:38 final size:39
Alignment explanation
Indices: 45399890--45399997 Score: 112
Period size: 39 Copynumber: 2.8 Consensus size: 39
45399880 GCAGGCTATA
* * * *
45399890 TGCTGGAATTATATCTGGGTTAAA-TGCCGCAGGCTTCG
1 TGCTGGAATTATATCTGGATTAAAGTCCCGCAGGCCTAG
*
45399928 TGCTGGTAA-TATATCTAGATTAAAGTCCCGCAGGCCTAG
1 TGCTGG-AATTATATCTGGATTAAAGTCCCGCAGGCCTAG
* * *
45399967 TGTTGGTATTATATCTGAACTTAAAGTCCCG
1 TGCTGGAATTATATCTGGA-TTAAAGTCCCG
45399998 TAGGTTTTGT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
38 20 0.35
39 26 0.46
40 11 0.19
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (39 bp):
TGCTGGAATTATATCTGGATTAAAGTCCCGCAGGCCTAG
Found at i:45408020 original size:38 final size:39
Alignment explanation
Indices: 45407957--45408109 Score: 150
Period size: 38 Copynumber: 3.9 Consensus size: 39
45407947 ATTTGATGTG
* * * * *
45407957 TATCCGGGCTTAAAGACCCGTAGGCTATATGCTGGAATTA
1 TATCTGGG-TTAAAGTCCCGCAGGCTATGTGCTGGTATTA
45407997 TATCTGGGTTAAA-TCCCGCAGGCT-TCGTGCTGGTATTA
1 TATCTGGGTTAAAGTCCCGCAGGCTAT-GTGCTGGTATTA
* *
45408035 TATCCGGGTTAAAGTCCCCCAGGCCTA-GTGCTGGTATTA
1 TATCTGGGTTAAAGTCCCGCAGG-CTATGTGCTGGTATTA
** * *
45408074 TATCTGAACTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATCTG-GGTTAAAGTCCCGCAGGCTATGTGCTGGT
45408110 GAGTCGATTC
Statistics
Matches: 94, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
37 1 0.01
38 31 0.33
39 31 0.33
40 31 0.33
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (39 bp):
TATCTGGGTTAAAGTCCCGCAGGCTATGTGCTGGTATTA
Found at i:45408106 original size:40 final size:39
Alignment explanation
Indices: 45407957--45408109 Score: 157
Period size: 39 Copynumber: 3.9 Consensus size: 39
45407947 ATTTGATGTG
* * * *
45407957 TATCCGGGCTTAAAGACCCGTAGGCTATA-TGCTGGAATTA
1 TATCTGGG-TTAAAGTCCCGCAGGCT-TAGTGCTGGTATTA
*
45407997 TATCTGGGTTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
1 TATCTGGGTTAAAGTCCCGCAGGCTTAGTGCTGGTATTA
* * *
45408035 TATCCGGGTTAAAGTCCCCCAGGCCTAGTGCTGGTATTA
1 TATCTGGGTTAAAGTCCCGCAGGCTTAGTGCTGGTATTA
** * *
45408074 TATCTGAACTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATCTG-GGTTAAAGTCCCGCAGGCTTAGTGCTGGT
45408110 GAGTCGATTC
Statistics
Matches: 94, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
37 1 0.01
38 31 0.33
39 32 0.34
40 30 0.32
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.31
Consensus pattern (39 bp):
TATCTGGGTTAAAGTCCCGCAGGCTTAGTGCTGGTATTA
Found at i:45411265 original size:25 final size:26
Alignment explanation
Indices: 45411227--45411294 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
45411217 ACACACCTTA
45411227 GCTCTTA-TGAGCTTCCCAATTA-CG
1 GCTCTTAGTGAGCTTCCCAATTATCG
* * *
45411251 GCTCTTAGTGAGCTTTCCATTTATTG
1 GCTCTTAGTGAGCTTCCCAATTATCG
* *
45411277 GCTCTTTGTGAGTTTCCC
1 GCTCTTAGTGAGCTTCCC
45411295 GATATGGCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
24 7 0.19
25 13 0.36
26 16 0.44
ACGTcount: A:0.15, C:0.25, G:0.19, T:0.41
Consensus pattern (26 bp):
GCTCTTAGTGAGCTTCCCAATTATCG
Found at i:45411279 original size:26 final size:25
Alignment explanation
Indices: 45411227--45411293 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
45411217 ACACACCTTA
*
45411227 GCTCTTA-TGAGCTTCCCAATTACG
1 GCTCTTAGTGAGCTTTCCAATTACG
* *
45411251 GCTCTTAGTGAGCTTTCCATTTATTG
1 GCTCTTAGTGAGCTTTCCAATTA-CG
*
45411277 GCTCTTTGTGAG-TTTCC
1 GCTCTTAGTGAGCTTTCC
45411294 CGATATGGCT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
24 7 0.19
25 18 0.49
26 12 0.32
ACGTcount: A:0.15, C:0.24, G:0.19, T:0.42
Consensus pattern (25 bp):
GCTCTTAGTGAGCTTTCCAATTACG
Found at i:45411377 original size:24 final size:25
Alignment explanation
Indices: 45411330--45411377 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
45411320 TATATTGCTA
* * *
45411330 TTCGGAGCTCCCTATTTAATGGCTC
1 TTCGGAGCTACCTAGTTAAAGGCTC
45411355 TTCGGAGCTACCT-GTTAAAGGCT
1 TTCGGAGCTACCTAGTTAAAGGCT
45411378 TAGATGAGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (25 bp):
TTCGGAGCTACCTAGTTAAAGGCTC
Found at i:45414726 original size:11 final size:11
Alignment explanation
Indices: 45414696--45414737 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
45414686 AATCAAATAG
45414696 TAATAATATATA
1 TAATAATAT-TA
45414708 TAATAATATTA
1 TAATAATATTA
* *
45414719 TAAGAATAGTA
1 TAATAATATTA
45414730 TAATAATA
1 TAATAATA
45414738 GATAGAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (11 bp):
TAATAATATTA
Found at i:45414738 original size:11 final size:11
Alignment explanation
Indices: 45414691--45414738 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
45414681 ATTTAAATCA
45414691 AATAGTAATAAT
1 AATAGT-ATAAT
45414703 -ATA-TATAAT
1 AATAGTATAAT
* *
45414712 AATATTATAAG
1 AATAGTATAAT
45414723 AATAGTATAAT
1 AATAGTATAAT
45414734 AATAG
1 AATAG
45414739 ATAGAATATA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 5 0.16
10 4 0.13
11 22 0.71
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.35
Consensus pattern (11 bp):
AATAGTATAAT
Found at i:45421034 original size:17 final size:17
Alignment explanation
Indices: 45421012--45421057 Score: 92
Period size: 17 Copynumber: 2.7 Consensus size: 17
45421002 TTTAGGGGCA
45421012 AAATTGTAATTTTTTCC
1 AAATTGTAATTTTTTCC
45421029 AAATTGTAATTTTTTCC
1 AAATTGTAATTTTTTCC
45421046 AAATTGTAATTT
1 AAATTGTAATTT
45421058 ATGGACTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.33, C:0.09, G:0.07, T:0.52
Consensus pattern (17 bp):
AAATTGTAATTTTTTCC
Found at i:45443757 original size:108 final size:108
Alignment explanation
Indices: 45443568--45443811 Score: 398
Period size: 108 Copynumber: 2.3 Consensus size: 108
45443558 TGTGTTACAG
* *
45443568 TAAGGATTTAGCCCAGACGGGTAATCTGTTGATCTCAATTATGAAAAGGATCTAACCGGGACAGT
1 TAAGGATTTAGCCCAGACGGGTAATCCGTTGATCTCAATTATGAAAAGGATCTAACCCGGACAGT
*
45443633 TGTTCCTTTGGATGATCGAGCCTCCCAAAGAATACATGTGCAT
66 TGTTCCTTTAGATGATCGAGCCTCCCAAAGAATACATGTGCAT
* * **
45443676 TAAGGATTTAGCCCGGACGGGTAATCCGTTGATCTCAATTATGAAAAGGATCTAGCCCGGATGGT
1 TAAGGATTTAGCCCAGACGGGTAATCCGTTGATCTCAATTATGAAAAGGATCTAACCCGGACAGT
* *
45443741 TGTTCCTTTAGATGATCGAGCCTCTCGAAGAATACATGTGCAT
66 TGTTCCTTTAGATGATCGAGCCTCCCAAAGAATACATGTGCAT
*
45443784 TAAGGATTTAGCCCAGACAGGTAATCCG
1 TAAGGATTTAGCCCAGACGGGTAATCCG
45443812 ATTAGGATCT
Statistics
Matches: 125, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
108 125 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (108 bp):
TAAGGATTTAGCCCAGACGGGTAATCCGTTGATCTCAATTATGAAAAGGATCTAACCCGGACAGT
TGTTCCTTTAGATGATCGAGCCTCCCAAAGAATACATGTGCAT
Found at i:45448953 original size:11 final size:11
Alignment explanation
Indices: 45448937--45448976 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
45448927 AGCCGAATAG
45448937 AAGAAAGAAAA
1 AAGAAAGAAAA
45448948 AAGAAAGAAAA
1 AAGAAAGAAAA
45448959 AA-AAAGAGAAA
1 AAGAAAGA-AAA
*
45448970 AAAAAAG
1 AAGAAAG
45448977 CTCTCATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 5 0.19
11 18 0.67
12 4 0.15
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (11 bp):
AAGAAAGAAAA
Found at i:45448957 original size:15 final size:13
Alignment explanation
Indices: 45448935--45448976 Score: 59
Period size: 12 Copynumber: 3.2 Consensus size: 13
45448925 CTAGCCGAAT
45448935 AGAAGAAAGAAAAA
1 AGAAGAAA-AAAAA
45448949 AGAAAGAAAAAAAA
1 AG-AAGAAAAAAAA
45448963 AG-AGAAAAAAAA
1 AGAAGAAAAAAAA
45448975 AG
1 AG
45448977 CTCTCATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 12 0.44
14 9 0.33
15 6 0.22
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (13 bp):
AGAAGAAAAAAAA
Found at i:45449442 original size:40 final size:41
Alignment explanation
Indices: 45449348--45449568 Score: 253
Period size: 40 Copynumber: 5.6 Consensus size: 41
45449338 TATTCGAATG
*
45449348 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCT-AGTGACT
* ** * *
45449389 ATATCCGGACTAAGAT-CTAAAGGCATTTGTGCGAGTTACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
45449429 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
45449469 ATATCCGGGCTAAG-TCCCGAAGGCATCTGTGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* * *
45449509 ATATCCGGGCTAAGA-CCCGAAGGC-CTTGTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGA-CT
45449548 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
45449569 CTTACTTGAG
Statistics
Matches: 154, Mismatches: 20, Indels: 15
0.81 0.11 0.08
Matches are distributed among these distances:
37 1 0.01
38 14 0.09
39 14 0.09
40 98 0.64
41 26 0.17
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:45453010 original size:43 final size:43
Alignment explanation
Indices: 45452872--45453065 Score: 225
Period size: 43 Copynumber: 4.6 Consensus size: 43
45452862 CCGAGGCTAT
* *
45452872 GTGTAAGACCATATCTGGGATA-TGACATC-ATTATGAGACTTC
1 GTGTAAGACCATATCTGGGATATTGGCATCGA-TATGAGATTTC
* * * *
45452914 GTGTAAGACCATATCTGGGATA-TGGTATCAATGTCAGATTTC
1 GTGTAAGACCATATCTGGGATATTGGCATCGATATGAGATTTC
* *
45452956 GTGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATTGGCATCGATATGAGATTTC
* * **
45452999 GTGTAAGACCATAGT-TGGGCTATTGGCATCGATATGATATCCC
1 GTGTAAGACCATA-TCTGGGATATTGGCATCGATATGAGATTTC
*
45453042 ATGTAAGACCATATCTGGGATATT
1 GTGTAAGACCATATCTGGGATATT
45453066 TCATTGGTGT
Statistics
Matches: 131, Mismatches: 17, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
42 56 0.43
43 75 0.57
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCATATCTGGGATATTGGCATCGATATGAGATTTC
Found at i:45455027 original size:31 final size:31
Alignment explanation
Indices: 45454992--45455061 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
45454982 TTGACTTTTT
* *
45454992 ATTTAATTGTGATATATTAACTAATGTGGTA
1 ATTTAATTGGGATATATTAACTAATGTGATA
* *
45455023 ATTTAATTGGGATGTATTAACTATTGTGATA
1 ATTTAATTGGGATATATTAACTAATGTGATA
*
45455054 ACTTAATT
1 ATTTAATT
45455062 TGGTCAGGGT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.34, C:0.04, G:0.16, T:0.46
Consensus pattern (31 bp):
ATTTAATTGGGATATATTAACTAATGTGATA
Found at i:45461496 original size:22 final size:22
Alignment explanation
Indices: 45461468--45461561 Score: 84
Period size: 22 Copynumber: 4.1 Consensus size: 22
45461458 CCTGAGCTGA
45461468 TGAACAGTAAGCTCTAATGAGC
1 TGAACAGTAAGCTCTAATGAGC
45461490 TGAACAGTAAGCT-T-ATGCGAGC
1 TGAACAGTAAGCTCTAAT--GAGC
* *
45461512 TGAAATAGTAAGCTCCAATGAGC
1 TG-AACAGTAAGCTCTAATGAGC
* * *
45461535 TAAAAACAGTAAGCTCTTACGAGC
1 T--GAACAGTAAGCTCTAATGAGC
45461559 TGA
1 TGA
45461562 TATATCTGTA
Statistics
Matches: 57, Mismatches: 8, Indels: 14
0.72 0.10 0.18
Matches are distributed among these distances:
20 2 0.04
21 1 0.02
22 20 0.35
23 15 0.26
24 17 0.30
25 2 0.04
ACGTcount: A:0.37, C:0.18, G:0.22, T:0.22
Consensus pattern (22 bp):
TGAACAGTAAGCTCTAATGAGC
Found at i:45461558 original size:47 final size:46
Alignment explanation
Indices: 45461446--45461561 Score: 119
Period size: 47 Copynumber: 2.5 Consensus size: 46
45461436 GAGCTATGGT
* * * *
45461446 CAGTAAGCTCCTCCTGAGCTGATGAACAGTAAGCTCTAATGAGCTGAA
1 CAGTAAGCTCTTAC-GAGCTGA-GAACAGTAAGCTCCAATGAGCTAAA
* *
45461494 CAGTAAGCT-TATGCGAGCTGA-AATAGTAAGCTCCAATGAGCTAAAAA
1 CAGTAAGCTCT-TACGAGCTGAGAACAGTAAGCTCCAATGAGCT--AAA
45461541 CAGTAAGCTCTTACGAGCTGA
1 CAGTAAGCTCTTACGAGCTGA
45461562 TATATCTGTA
Statistics
Matches: 58, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
45 19 0.33
47 27 0.47
48 12 0.21
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (46 bp):
CAGTAAGCTCTTACGAGCTGAGAACAGTAAGCTCCAATGAGCTAAA
Found at i:45463633 original size:37 final size:37
Alignment explanation
Indices: 45463586--45463715 Score: 152
Period size: 37 Copynumber: 3.5 Consensus size: 37
45463576 ATTCGAGCAA
** * * *
45463586 ACATTCAGTAGAATCAACAGATATTTCTTATTTTAGC
1 ACATTCAGTAGAATCAGTAGATATTGCTTGTTTGAGC
* * *
45463623 ACATTTAGTAGAATTAGTAGATATTGCTCGTTTGAGC
1 ACATTCAGTAGAATCAGTAGATATTGCTTGTTTGAGC
* * *
45463660 ACATTCAATAGAATCAGTAGATATTGCTTGTTAGAAC
1 ACATTCAGTAGAATCAGTAGATATTGCTTGTTTGAGC
*
45463697 ACATTTAGTAGAATCAGTA
1 ACATTCAGTAGAATCAGTA
45463716 TTCCATTTTT
Statistics
Matches: 77, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 77 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (37 bp):
ACATTCAGTAGAATCAGTAGATATTGCTTGTTTGAGC
Found at i:45474388 original size:54 final size:54
Alignment explanation
Indices: 45474304--45474434 Score: 235
Period size: 54 Copynumber: 2.4 Consensus size: 54
45474294 CATCATATGG
*
45474304 CAGGATTACTAGTCCAGGCTAAATCCCCCATTATATGAACTCATAAGGTGATGT
1 CAGGATTACCAGTCCAGGCTAAATCCCCCATTATATGAACTCATAAGGTGATGT
*
45474358 CGGGATTACCAGTCCAGGCTAAATCCCCCATTATATGAACTCATAAGGTGATGT
1 CAGGATTACCAGTCCAGGCTAAATCCCCCATTATATGAACTCATAAGGTGATGT
*
45474412 CAGGATTACCAGTCCAAGCTAAA
1 CAGGATTACCAGTCCAGGCTAAA
45474435 GCCCTTATAT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 73 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (54 bp):
CAGGATTACCAGTCCAGGCTAAATCCCCCATTATATGAACTCATAAGGTGATGT
Found at i:45482093 original size:53 final size:54
Alignment explanation
Indices: 45482007--45482136 Score: 208
Period size: 53 Copynumber: 2.4 Consensus size: 54
45481997 TCATATGGAA
* * * *
45482007 GGATTACCAGTCCAAGCTAAATACCCCATTATATGAACTCATAAGGTGATGTCG
1 GGATTACCAGTCCAGGATAAATCCCCCACTATATGAACTCATAAGGTGATGTCG
*
45482061 GGATTACCA-TCCAGGTTAAATCCCCCACTATATGAACTCATAAGGTGATGTCG
1 GGATTACCAGTCCAGGATAAATCCCCCACTATATGAACTCATAAGGTGATGTCG
45482114 GGATTACCAGTCCAGGATAAATC
1 GGATTACCAGTCCAGGATAAATC
45482137 TCTTATATTG
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
53 49 0.70
54 21 0.30
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (54 bp):
GGATTACCAGTCCAGGATAAATCCCCCACTATATGAACTCATAAGGTGATGTCG
Found at i:45485589 original size:25 final size:25
Alignment explanation
Indices: 45485559--45485610 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
45485549 AAATCAATAA
45485559 AGAGAGAATATGACAGTGTGATTTG
1 AGAGAGAATATGACAGTGTGATTTG
45485584 AGAGAGAATATGACAGTGTGATTTG
1 AGAGAGAATATGACAGTGTGATTTG
45485609 AG
1 AG
45485611 TTGGTATAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.33, T:0.27
Consensus pattern (25 bp):
AGAGAGAATATGACAGTGTGATTTG
Found at i:45487589 original size:44 final size:43
Alignment explanation
Indices: 45487528--45487614 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 43
45487518 CCACTAGGAA
45487528 TTATGTAATCTGAACTCATTGAGTTGT-GTCTGAGTTCATGAT
1 TTATGTAATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
*
45487570 TTATGTGACATCTGAACTCATTGAGTTGTGGTCTGAGTTCGTGAT
1 TTATGT-A-ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
45487615 ATGTATGACA
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
42 6 0.15
43 1 0.02
44 20 0.49
45 14 0.34
ACGTcount: A:0.22, C:0.13, G:0.24, T:0.41
Consensus pattern (43 bp):
TTATGTAATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGAT
Found at i:45487624 original size:45 final size:44
Alignment explanation
Indices: 45487535--45487624 Score: 135
Period size: 45 Copynumber: 2.0 Consensus size: 44
45487525 GAATTATGTA
* *
45487535 ATCTGAACTCATTGAGTTGTGTCTGAGTTCATGATTTATGTGAC
1 ATCTGAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGAC
* *
45487579 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCGTGATATGTATGAC
1 ATCTGAACTCATTGAGTTGT-GTCTGAGTTCATGATATATATGAC
45487624 A
1 A
45487625 CATGTTTGGG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 20 0.49
45 21 0.51
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.39
Consensus pattern (44 bp):
ATCTGAACTCATTGAGTTGTGTCTGAGTTCATGATATATATGAC
Found at i:45492477 original size:20 final size:20
Alignment explanation
Indices: 45492452--45492490 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
45492442 ACAAAATCTA
45492452 TGAAAATAATTTAATTTCTG
1 TGAAAATAATTTAATTTCTG
45492472 TGAAAATAATTTAATTTCT
1 TGAAAATAATTTAATTTCT
45492491 CAATATTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (20 bp):
TGAAAATAATTTAATTTCTG
Found at i:45495188 original size:28 final size:28
Alignment explanation
Indices: 45495131--45495199 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 28
45495121 AATACGCAGT
*
45495131 AAACCACCAGATTCAGATATATGTGGTC
1 AAACCACCAGATACAGATATATGTGGTC
* *
45495159 AAGCCACCAGA-ACAGATATATGTAGTTC
1 AAACCACCAGATACAGATATATGT-GGTC
*
45495187 AAACAACCAGATA
1 AAACCACCAGATA
45495200 AGGTAAATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
27 11 0.32
28 22 0.65
29 1 0.03
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (28 bp):
AAACCACCAGATACAGATATATGTGGTC
Found at i:45496916 original size:46 final size:46
Alignment explanation
Indices: 45496866--45497038 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
45496856 TGGTTGAGCA
* *
45496866 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
* * ** * *
45496912 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATTTA-ACTAGGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGA-ACG
45496959 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
*
45497005 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTA
45497039 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 5 0.05
46 64 0.60
47 36 0.34
48 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
Found at i:45505247 original size:47 final size:47
Alignment explanation
Indices: 45505156--45505552 Score: 674
Period size: 47 Copynumber: 8.4 Consensus size: 47
45505146 ATTTTGTTAC
45505156 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
*
45505205 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCAAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
45505252 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
45505299 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGT
45505348 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
45505395 GATGAATGTGAAAGTGTATGTATGTGATAAGGCTGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
45505442 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
* * *
45505489 GATGAATGTGAAA--GTATATATATGATAAGGCCGAATGGTCAATGT
1 GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
*
45505534 GATGGAA-GTGGAAGTGTAT
1 GAT-GAATGTGAAAGTGTAT
45505553 AACTGTGATA
Statistics
Matches: 335, Mismatches: 8, Indels: 12
0.94 0.02 0.03
Matches are distributed among these distances:
45 37 0.11
46 3 0.01
47 228 0.68
49 67 0.20
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GATGAATGTGAAAGTGTATGTATGTGATAAGGCCGAATGGCCAATGT
Found at i:45505414 original size:143 final size:143
Alignment explanation
Indices: 45505156--45505552 Score: 696
Period size: 143 Copynumber: 2.8 Consensus size: 143
45505146 ATTTTGTTAC
45505156 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
45505221 TATGTATGTGATAAGGCCAAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
66 TATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
45505286 GAATGGCCAATGT
131 GAATGGCCAATGT
45505299 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
*
45505364 TATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCT
66 TATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
45505429 GAATGGCCAATGT
131 GAATGGCCAATGT
45505442 GATGAATGTGAAAGTGTATG--TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA--G
1 GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
* * * *
45505503 TATATATATGATAAGGCCGAATGGTCAATGTGATGGAA-GTGGAAGTGTAT
66 TATGTATGTGATAAGGCCGAATGGCCAATGTGAT-GAATGTGAAAGTGTAT
45505553 AACTGTGATA
Statistics
Matches: 247, Mismatches: 6, Indels: 6
0.95 0.02 0.02
Matches are distributed among these distances:
139 43 0.17
140 3 0.01
141 40 0.16
143 161 0.65
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (143 bp):
GATGAATGTGAAAGTGTATGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG
TATGTATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATGTATGTGATAAGGCC
GAATGGCCAATGT
Found at i:45505419 original size:16 final size:16
Alignment explanation
Indices: 45505396--45505468 Score: 55
Period size: 16 Copynumber: 4.6 Consensus size: 16
45505386 GGCCAATGTG
45505396 ATGAATGTGAAAGTGT
1 ATGAATGTGAAAGTGT
*
45505412 ATGTATGTGATAAG-G-
1 ATGAATGTGA-AAGTGT
* *
45505427 CTGAATG-GCCAA-TGT
1 ATGAATGTG-AAAGTGT
45505442 GATGAATGTGAAAGTGT
1 -ATGAATGTGAAAGTGT
*
45505459 ATGTATGTGA
1 ATGAATGTGA
45505469 TAAGGCCGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
14 4 0.09
15 5 0.12
16 27 0.63
17 7 0.16
ACGTcount: A:0.33, C:0.04, G:0.32, T:0.32
Consensus pattern (16 bp):
ATGAATGTGAAAGTGT
Found at i:45505536 original size:22 final size:22
Alignment explanation
Indices: 45505463--45505536 Score: 53
Period size: 22 Copynumber: 3.3 Consensus size: 22
45505453 AAGTGTATGT
*
45505463 ATGTGATAAGGCCGAATGGCCA
1 ATGTGATAAGGCCGAATGGTCA
* * * *
45505485 ATGTGATGAATG-TGAA-AGTATA
1 ATGTGAT-AAGGCCGAATGGT-CA
*
45505507 TATATGATAAGGCCGAATGGTCA
1 -ATGTGATAAGGCCGAATGGTCA
45505530 ATGTGAT
1 ATGTGAT
45505537 GGAAGTGGAA
Statistics
Matches: 36, Mismatches: 11, Indels: 10
0.63 0.19 0.18
Matches are distributed among these distances:
21 1 0.03
22 20 0.56
23 13 0.36
24 2 0.06
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCGAATGGTCA
Found at i:45508890 original size:46 final size:46
Alignment explanation
Indices: 45508840--45509012 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
45508830 TGGTTGAGCA
* *
45508840 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * *
45508886 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
45508933 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
45508979 -CTCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
45509013 GGGGCGGATT
Statistics
Matches: 105, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
45 2 0.02
46 66 0.63
47 36 0.34
48 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:45521469 original size:61 final size:60
Alignment explanation
Indices: 45521366--45521480 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 60
45521356 AAAATGGGCC
** * * *
45521366 CACATGCCTGTGTGGCTCACAAGACCCAACTGGCTAAGCCCATGTGGGCCACACGGCCTAA
1 CACATGCCCATGTGGCCCACAAGACCCAACTGCCCAAGCCCAT-TGGGCCACACGGCCTAA
* *
45521427 CACATGCCCATGTGGCCCACAAGATCCAACTGACCCAA-CCCATTTGGCCACACG
1 CACATGCCCATGTGGCCCACAAGACCCAACTG-CCCAAGCCCATTGGGCCACACG
45521481 AGTCTAGAAC
Statistics
Matches: 46, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
60 10 0.22
61 33 0.72
62 3 0.07
ACGTcount: A:0.26, C:0.37, G:0.21, T:0.16
Consensus pattern (60 bp):
CACATGCCCATGTGGCCCACAAGACCCAACTGCCCAAGCCCATTGGGCCACACGGCCTAA
Found at i:45523849 original size:56 final size:54
Alignment explanation
Indices: 45523736--45523883 Score: 163
Period size: 56 Copynumber: 2.7 Consensus size: 54
45523726 GACATAGCAC
* * * *
45523736 GCCTCTCAATAGGGCTACATATGAGCACCCAAACCTAGCATGAATCACATTACCAT
1 GCCTCTCAACAGGGCTACATA--AGCTCCCAGACCTAGCATGAACCACATTACCAT
* *
45523792 GCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCGTGTACCACATAATTA-CAT
1 GCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATGAACCAC---ATTACCAT
* * *
45523848 GCCTCTCAACGGGGCTACACAAGCTCCCGGACCTAG
1 GCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAG
45523884 TATCCATATC
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
54 20 0.25
56 56 0.70
57 4 0.05
ACGTcount: A:0.30, C:0.33, G:0.18, T:0.20
Consensus pattern (54 bp):
GCCTCTCAACAGGGCTACATAAGCTCCCAGACCTAGCATGAACCACATTACCAT
Found at i:45525486 original size:21 final size:22
Alignment explanation
Indices: 45525446--45525487 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
45525436 TTTAAAACTC
45525446 TAAAAAGAAGATAATATTTATG
1 TAAAAAGAAGATAATATTTATG
* *
45525468 TAAAAAGTATATAAT-TTTAT
1 TAAAAAGAAGATAATATTTAT
45525488 TACTAAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (22 bp):
TAAAAAGAAGATAATATTTATG
Found at i:45527237 original size:19 final size:20
Alignment explanation
Indices: 45527210--45527256 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
45527200 CAAAAAAAGA
*
45527210 TATACTAAA-ATTTTAATAT
1 TATATTAAATATTTTAATAT
*
45527229 TATATTAAATTTTTTAATAT
1 TATATTAAATATTTTAATAT
45527249 TATATTAA
1 TATATTAA
45527257 TACCAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (20 bp):
TATATTAAATATTTTAATAT
Found at i:45528677 original size:10 final size:10
Alignment explanation
Indices: 45528662--45528705 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
45528652 AAAGGGAAGG
45528662 TTTTATAATT
1 TTTTATAATT
45528672 TTTTATAGATCT
1 TTTTATA-AT-T
*
45528684 TTTT-TATTT
1 TTTTATAATT
45528693 TTTTATAATT
1 TTTTATAATT
45528703 TTT
1 TTT
45528706 GAAAAATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
9 5 0.17
10 15 0.52
11 4 0.14
12 5 0.17
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (10 bp):
TTTTATAATT
Found at i:45535357 original size:35 final size:35
Alignment explanation
Indices: 45535311--45535393 Score: 148
Period size: 35 Copynumber: 2.4 Consensus size: 35
45535301 GTTTGGTTGG
45535311 AAATGATCTACTGGCTCTACAAAGCGGCATCATGA
1 AAATGATCTACTGGCTCTACAAAGCGGCATCATGA
* *
45535346 AAATGATCTACTGGCTCTACAGAGCGGCATCATGG
1 AAATGATCTACTGGCTCTACAAAGCGGCATCATGA
45535381 AAATGATCTACTG
1 AAATGATCTACTG
45535394 AATCTTGACC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.24
Consensus pattern (35 bp):
AAATGATCTACTGGCTCTACAAAGCGGCATCATGA
Found at i:45538487 original size:35 final size:34
Alignment explanation
Indices: 45538474--45538539 Score: 84
Period size: 35 Copynumber: 2.0 Consensus size: 34
45538464 AATGAAAATT
*
45538474 TATATGTAAAAATAATACGTATAAATAATATATAA
1 TATATGTAAAAAT-ATACATATAAATAATATATAA
*
45538509 TATATGTAAAAATATA-ATA-ATAT-ATATATAA
1 TATATGTAAAAATATACATATAAATAATATATAA
45538540 AATAATAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 8 0.28
32 3 0.10
33 2 0.07
34 3 0.10
35 13 0.45
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.36
Consensus pattern (34 bp):
TATATGTAAAAATATACATATAAATAATATATAA
Done.