Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 92880876
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2857347 characters in sequence are not A, C, G, or T
File 144 of 290
Found at i:45833683 original size:21 final size:21
Alignment explanation
Indices: 45833589--45833689 Score: 60
Period size: 21 Copynumber: 4.7 Consensus size: 21
45833579 TTTAAACCCC
*
45833589 AACCCTTAAACCATAAACCATA
1 AACCC-TAAACCATAAATCATA
** *
45833611 ATTCCTAACCCAT-AATCCATA
1 AACCCTAAACCATAAAT-CATA
* * *
45833632 AACCTCAAAACAATAACTCATA
1 AACC-CTAAACCATAAATCATA
* ***
45833654 CATTTTAAACCATAAATCATA
1 AACCCTAAACCATAAATCATA
*
45833675 AACCCTAAACTATAA
1 AACCCTAAACCATAA
45833690 TGATAATTAA
Statistics
Matches: 54, Mismatches: 22, Indels: 7
0.65 0.27 0.08
Matches are distributed among these distances:
20 2 0.04
21 36 0.67
22 14 0.26
23 2 0.04
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.24
Consensus pattern (21 bp):
AACCCTAAACCATAAATCATA
Found at i:45833868 original size:8 final size:7
Alignment explanation
Indices: 45833783--45833881 Score: 94
Period size: 7 Copynumber: 13.9 Consensus size: 7
45833773 ATTAATTAAT
45833783 CTAAACC
1 CTAAACC
45833790 CTAAACTC
1 CTAAAC-C
* *
45833798 ATAATCC
1 CTAAACC
45833805 CTAAACC
1 CTAAACC
45833812 CTAAACC
1 CTAAACC
* *
45833819 ATAAATC
1 CTAAACC
*
45833826 CTAAAAC
1 CTAAACC
*
45833833 ATAAACC
1 CTAAACC
45833840 CTAAACC
1 CTAAACC
45833847 CTAAACC
1 CTAAACC
45833854 ACT-AACC
1 -CTAAACC
45833861 CTTAAACC
1 C-TAAACC
45833869 CT-AACAC
1 CTAAAC-C
45833876 CTAAAC
1 CTAAAC
45833882 GTAAAACCCC
Statistics
Matches: 75, Mismatches: 11, Indels: 11
0.77 0.11 0.11
Matches are distributed among these distances:
6 4 0.05
7 56 0.75
8 15 0.20
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:45833931 original size:15 final size:15
Alignment explanation
Indices: 45833909--45833942 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
45833899 AAACCACCCT
*
45833909 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
45833923 TAAACCCATAATCCA
1 TAAACCCATAATCCA
45833938 TAAAC
1 TAAAC
45833943 ATTAAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:45834299 original size:40 final size:40
Alignment explanation
Indices: 45834235--45834330 Score: 110
Period size: 40 Copynumber: 2.4 Consensus size: 40
45834225 ATTCTTTTGG
45834235 GGCGTTTTTCAAAAAAAGTCGCTAAAGATCG-AGCAT-TAGC
1 GGCGTTTTTCAAAAAAAGTCGCTAAAGAT-GTA-CATATAGC
* *
45834275 GGCGTTTTTCAAAAAACG-CTGCTAAAGGTGTACATATAGC
1 GGCGTTTTTCAAAAAAAGTC-GCTAAAGATGTACATATAGC
45834315 GGCGTTTCTT-AAAAAA
1 GGCGTTT-TTCAAAAAA
45834331 GCGCCCCTAG
Statistics
Matches: 50, Mismatches: 2, Indels: 8
0.83 0.03 0.13
Matches are distributed among these distances:
39 5 0.10
40 43 0.86
41 2 0.04
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (40 bp):
GGCGTTTTTCAAAAAAAGTCGCTAAAGATGTACATATAGC
Found at i:45834474 original size:40 final size:40
Alignment explanation
Indices: 45834430--45834509 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 40
45834420 GCAGCGTTTT
*
45834430 TTAAAGGTGTA-TATATAGCGACGTTTTTCAAAAAGCGCCG
1 TTAAAAGTGTACT-TATAGCGACGTTTTTCAAAAAGCGCCG
* *
45834470 TTAAAAGTGTACTTATAGCGGCGTTTTTTAAAAAGCGCCG
1 TTAAAAGTGTACTTATAGCGACGTTTTTCAAAAAGCGCCG
45834510 CTAATACTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
40 35 0.97
41 1 0.03
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (40 bp):
TTAAAAGTGTACTTATAGCGACGTTTTTCAAAAAGCGCCG
Found at i:45834529 original size:40 final size:40
Alignment explanation
Indices: 45834443--45834553 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 40
45834433 AAGGTGTATA
* * *
45834443 TATAGCGACGTTTTTCAAAAAGCGCCGTTAAAAGTGTACT
1 TATAGCGGCGTTTTTTAAAAAGCGCCGCTAAAAGTGTACT
* *
45834483 TATAGCGGCGTTTTTTAAAAAGCGCCGCTAATACT-TGATCT
1 TATAGCGGCGTTTTTTAAAAAGCGCCGCTAAAAGTGT-A-CT
*
45834524 T-TAGCGGC-ATTTTTAAAAAGCGCCGCTAAA
1 TATAGCGGCGTTTTTTAAAAAGCGCCGCTAAA
45834554 GCCACTAAAA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
39 21 0.34
40 38 0.61
41 3 0.05
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (40 bp):
TATAGCGGCGTTTTTTAAAAAGCGCCGCTAAAAGTGTACT
Found at i:45834711 original size:41 final size:41
Alignment explanation
Indices: 45834638--45834723 Score: 111
Period size: 41 Copynumber: 2.1 Consensus size: 41
45834628 TATAGCGGCG
*
45834638 TTTTTAAAAAAGTGCCGCTAATACTTGATCTTTAACGGCAT
1 TTTTTAAAAAAGTGCCGCTAATACTTCATCTTTAACGGCAT
* * * *
45834679 TTTTTTAAAAAGTGCCGCTAATGC-TCATTCTTTAGCGGCGT
1 TTTTTAAAAAAGTGCCGCTAATACTTCA-TCTTTAACGGCAT
45834720 TTTT
1 TTTT
45834724 CATTAAAACG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
40 2 0.05
41 37 0.95
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (41 bp):
TTTTTAAAAAAGTGCCGCTAATACTTCATCTTTAACGGCAT
Found at i:45837133 original size:55 final size:53
Alignment explanation
Indices: 45837046--45837300 Score: 225
Period size: 55 Copynumber: 4.8 Consensus size: 53
45837036 ATTAGGGTTT
*
45837046 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAACGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCTAAGGC
* ** * * *
45837101 AAGGAAATAATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT--TCTAAGGC
* * ** * *
45837156 AAAGG-TCCCATGTAAGACCGTGCCAAGGTATGGCATTGGTGAG-TTCATAAGTC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-TAAGGC
* *
45837209 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
** * * * *
45837258 AAGGATACCACATAAGACCACGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
45837301 GTACCCACGT
Statistics
Matches: 163, Mismatches: 31, Indels: 18
0.77 0.15 0.08
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 39 0.24
54 11 0.07
55 64 0.39
56 4 0.02
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCTAAGGC
Found at i:45837252 original size:108 final size:110
Alignment explanation
Indices: 45837053--45837253 Score: 291
Period size: 108 Copynumber: 1.8 Consensus size: 110
45837043 TTTAAGGATA
*
45837053 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAACGTTTCTAAGGCAAGGAAATAATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAACGTTTCTAAGGCAAGGAAACAATGTAAGA
*
45837118 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * * * *
45837163 CCATGTAAGACCGTGCCAAGGTATGGC-ATTGGTGA-G-TTCATAAGTCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAACGTTTC-TAAGGCAAGGAAACAATGTAAG
*
45837225 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
45837254 TCAAAAGGAT
Statistics
Matches: 81, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 25 0.31
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAACGTTTCTAAGGCAAGGAAACAATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:45837395 original size:23 final size:24
Alignment explanation
Indices: 45837369--45837416 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
45837359 AAGGTAAGTT
*
45837369 AAGGTAAGACGAGTT-ATACTAAA
1 AAGGTAAGACAAGTTCATACTAAA
*
45837392 AAGGTAAGACAAGTTCATGCTAAA
1 AAGGTAAGACAAGTTCATACTAAA
45837416 A
1 A
45837417 GAGAAAAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 14 0.64
24 8 0.36
ACGTcount: A:0.48, C:0.10, G:0.21, T:0.21
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATACTAAA
Found at i:45837513 original size:16 final size:16
Alignment explanation
Indices: 45837492--45837522 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45837482 ATAAATTTGA
45837492 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
45837508 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
45837523 AAGTGAAGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:45842680 original size:27 final size:27
Alignment explanation
Indices: 45842650--45842826 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
45842640 ATATTGAGTC
* * *
45842650 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* *
45842677 CGCACACTTAGTGCTACGTAATCAA-T
1 CGCACACTTAGTGCTACATAGTCAACT
45842703 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
45842731 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
45842758 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
45842785 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
45842812 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
45842827 GTACAATTTA
Statistics
Matches: 129, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.17
27 85 0.66
28 22 0.17
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:45842815 original size:81 final size:81
Alignment explanation
Indices: 45842671--45842825 Score: 233
Period size: 81 Copynumber: 1.9 Consensus size: 81
45842661 TGCTATATAA
* *
45842671 TCAACTCGCACACTTAGTGCTACGTAATCAATCGCACACTTAGTGCTACATAGTCAAACTCGCAC
1 TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
45842736 ACTTAGTGCCGCATGG
66 ACTTAGTGCCGCATGG
* * *
45842752 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAA-TCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCA-ATCGCACACTTAGTGCAACATAGTCAAACTCGC
45842815 ACACTTAGTGC
64 ACACTTAGTGC
45842826 TGTACAATTT
Statistics
Matches: 67, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
80 1 0.01
81 40 0.60
82 26 0.39
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAATCGCACACTTAGTGCAACATAGTCAAACTCGCAC
ACTTAGTGCCGCATGG
Found at i:45849229 original size:12 final size:12
Alignment explanation
Indices: 45849212--45849236 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45849202 TATGTATGTT
45849212 TGAAAATTTTTA
1 TGAAAATTTTTA
45849224 TGAAAATTTTTA
1 TGAAAATTTTTA
45849236 T
1 T
45849237 TATTTGCTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.08, T:0.52
Consensus pattern (12 bp):
TGAAAATTTTTA
Found at i:45850031 original size:13 final size:13
Alignment explanation
Indices: 45850015--45850057 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
45850005 GAGAGATTTT
45850015 AGGGATTTGGCAG
1 AGGGATTTGGCAG
*
45850028 AGGGAATTGG-AG
1 AGGGATTTGGCAG
45850040 AGGGGATTTCGGCAG
1 A-GGGATTT-GGCAG
45850055 AGG
1 AGG
45850058 AGTATTAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
12 3 0.12
13 15 0.60
14 4 0.16
15 3 0.12
ACGTcount: A:0.26, C:0.07, G:0.49, T:0.19
Consensus pattern (13 bp):
AGGGATTTGGCAG
Found at i:45851274 original size:25 final size:25
Alignment explanation
Indices: 45851245--45851292 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
45851235 TTATAATATG
** *
45851245 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCATTTTACCCCTAGGTA
45851270 AAAATGACCATTTTACCCCTAGG
1 AAAATGACCATTTTACCCCTAGG
45851293 GTTTAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
AAAATGACCATTTTACCCCTAGGTA
Found at i:45851451 original size:25 final size:25
Alignment explanation
Indices: 45851423--45851514 Score: 139
Period size: 25 Copynumber: 3.7 Consensus size: 25
45851413 GAGGAAGTGC
* *
45851423 AAAAGGGCTATGCCCCAATTTACCG
1 AAAAGGGCTTTGCCCCAATTTACCA
*
45851448 AAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTTTGCCCCAATTTACCA
* *
45851473 AAAAGGGCTTTACCCCAATTTATCA
1 AAAAGGGCTTTGCCCCAATTTACCA
45851498 AAAAGGGCTTTGCCCCA
1 AAAAGGGCTTTGCCCCA
45851515 GTTATTAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 60 1.00
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAATTTACCA
Found at i:45851477 original size:50 final size:50
Alignment explanation
Indices: 45851423--45851517 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
45851413 GAGGAAGTGC
* *
45851423 AAAAGGGCTATGCCCCAATTTACCGAAAAGGGCTTTGCCCCAGTTTACCA
1 AAAAGGGCTATACCCCAATTTACCAAAAAGGGCTTTGCCCCAGTTTACCA
* *
45851473 AAAAGGGCTTTACCCCAATTTATCAAAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTATACCCCAATTTACCAAAAAGGGCTTTGCCCCAGTT
45851518 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (50 bp):
AAAAGGGCTATACCCCAATTTACCAAAAAGGGCTTTGCCCCAGTTTACCA
Found at i:45851777 original size:31 final size:31
Alignment explanation
Indices: 45851739--45851879 Score: 228
Period size: 31 Copynumber: 4.5 Consensus size: 31
45851729 CGTTTGCAGT
*
45851739 AAAGGCTTCAGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
45851770 AAAGGCTTCGACCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
45851801 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
* * * *
45851832 AAAGGCTTCGGCCCAGTGACATGGATAACGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
45851863 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
45851880 ATCTGCTGAG
Statistics
Matches: 103, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 103 1.00
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:45854957 original size:40 final size:40
Alignment explanation
Indices: 45854855--45854966 Score: 100
Period size: 40 Copynumber: 2.8 Consensus size: 40
45854845 ACGTTAAACT
* * * * *
45854855 GAAGCTATCTCGATATCACACACTTAGAGCCACATAAAGCT
1 GAAGCTATCTCGAAAT-ACACACTAAGTGCTACATAAAGCC
* * * *
45854896 GAAGCTAT-TCGAATTTTCACACTAAGTGCTGCATATAGCC
1 GAAGCTATCTCGAA-ATACACACTAAGTGCTACATAAAGCC
* *
45854936 GAAGCTATCTCGAAATGCACACTAAATGCTA
1 GAAGCTATCTCGAAATACACACTAAGTGCTA
45854967 AATATAGTAG
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
40 42 0.75
41 14 0.25
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
GAAGCTATCTCGAAATACACACTAAGTGCTACATAAAGCC
Found at i:45858322 original size:40 final size:40
Alignment explanation
Indices: 45858267--45858487 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
45858257 TATTCGGATG
45858267 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
45858307 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** *
45858347 ATATTCGGGCTAAGTCCCGAAGGCATTTGTGTTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
45858387 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
45858427 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
45858467 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
45858488 ATACTTGGGT
Statistics
Matches: 165, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 13 0.08
40 152 0.92
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:45862324 original size:172 final size:172
Alignment explanation
Indices: 45862120--45862452 Score: 576
Period size: 172 Copynumber: 1.9 Consensus size: 172
45862110 GTACAAGTCA
* * *
45862120 GTATACCCCCTAATTGGCACACGGCCTAGCACACGGGCTTATGACTTAGCCGTGTTGCATAAGTC
1 GTATACCCCCTAATTAGCACACGGCCTAGCACACAGGCTTATGACTTAGCCGTATTGCATAAGTC
* *
45862185 AGTATACCTTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCTACTT
66 AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
*
45862250 CGAAGGGTACACGGGCTAGACAAACGGGTGTGTCGTTGAAGG
131 CAAAGGGTACACGGGCTAGACAAACGGGTGTGTCGTTGAAGG
*
45862292 GTATACCCCCTAATTAGCACACGGCCTAGCACACAGGCTTGTGACTTAGCCGTATTGCATAAGTC
1 GTATACCCCCTAATTAGCACACGGCCTAGCACACAGGCTTATGACTTAGCCGTATTGCATAAGTC
* *
45862357 AGTATACCCTATAGTTTTGGCACGGCCTAGAACACGGCTTGGCACACGGACGTGTGTGGCCACTT
66 AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
*
45862422 CAAAGGGTACACGGGCTAGACACACGGGTGT
131 CAAAGGGTACACGGGCTAGACAAACGGGTGT
45862453 ATCATCGACT
Statistics
Matches: 151, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
172 151 1.00
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (172 bp):
GTATACCCCCTAATTAGCACACGGCCTAGCACACAGGCTTATGACTTAGCCGTATTGCATAAGTC
AGTATACCCTACAGTTTTGGCACGGCCTAGAACACGACTTGGCACACGGACGTGTGTGGCCACTT
CAAAGGGTACACGGGCTAGACAAACGGGTGTGTCGTTGAAGG
Found at i:45875583 original size:14 final size:15
Alignment explanation
Indices: 45875564--45875593 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
45875554 ATATTTGACT
45875564 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
45875578 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
45875593 T
1 T
45875594 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:45879157 original size:13 final size:13
Alignment explanation
Indices: 45879139--45879163 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45879129 GAGAGGAGAC
45879139 ACGGTCGTGTGAT
1 ACGGTCGTGTGAT
45879152 ACGGTCGTGTGA
1 ACGGTCGTGTGA
45879164 AAATAGGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.40, T:0.28
Consensus pattern (13 bp):
ACGGTCGTGTGAT
Found at i:45883852 original size:14 final size:15
Alignment explanation
Indices: 45883833--45883862 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
45883823 ATATTTGACT
45883833 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
45883847 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
45883862 T
1 T
45883863 TTTAATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.20, C:0.10, G:0.13, T:0.57
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:45885776 original size:93 final size:93
Alignment explanation
Indices: 45885617--45885787 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
45885607 GCCCCTAAGT
* *
45885617 GAACTCGGACTCAACTGAACGAGCTTGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
45885682 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
45885710 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
45885774 ACGAGTTCGGATGC
65 ACGAGTTCGGATGC
45885788 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:45885781 original size:46 final size:46
Alignment explanation
Indices: 45885612--45885784 Score: 203
Period size: 46 Copynumber: 3.7 Consensus size: 46
45885602 AACCCGCCCC
* *
45885612 TAAGTGAACTCGGACTCAACTGAACGAGCTT-GGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCA
* *
45885658 TAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
45885706 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
45885751 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45885785 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.54
47 28 0.26
48 2 0.02
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:45892812 original size:46 final size:45
Alignment explanation
Indices: 45892719--45892804 Score: 111
Period size: 46 Copynumber: 1.9 Consensus size: 45
45892709 TACATCTCAC
* *
45892719 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGTTCGGA-ATGCGCAACCATAAGT
* * *
45892765 GAACTCGGACTCAACTCAACGAGTTTGG-ATGCTCAACCAT
1 GAACTCAGACTCAACTCAACGAGTTCGGAATGCGCAACCAT
45892805 CCTAGTGACA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 9 0.26
46 26 0.74
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
GAACTCAGACTCAACTCAACGAGTTCGGAATGCGCAACCATAAGT
Found at i:45895408 original size:7 final size:8
Alignment explanation
Indices: 45895364--45895406 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
45895354 ATGTTTCGGC
*
45895364 AAAAGCCG
1 AAAAGTCG
* *
45895372 AAATGCCG
1 AAAAGTCG
45895380 AAAAGTCG
1 AAAAGTCG
*
45895388 AAAAATCG
1 AAAAGTCG
45895396 AAAAGTCG
1 AAAAGTCG
45895404 AAA
1 AAA
45895407 GTTTGGCTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.53, C:0.16, G:0.21, T:0.09
Consensus pattern (8 bp):
AAAAGTCG
Found at i:45895548 original size:18 final size:19
Alignment explanation
Indices: 45895509--45895550 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
45895499 GTTGTGATTT
*
45895509 GGCTATATGGGCCAGAATG
1 GGCTAAATGGGCCAGAATG
*
45895528 GGCTAAATGGGCCCG-ATG
1 GGCTAAATGGGCCAGAATG
45895546 GGCTA
1 GGCTA
45895551 TTGGGCCCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.24, C:0.19, G:0.38, T:0.19
Consensus pattern (19 bp):
GGCTAAATGGGCCAGAATG
Found at i:45895675 original size:29 final size:28
Alignment explanation
Indices: 45895617--45895740 Score: 122
Period size: 29 Copynumber: 4.4 Consensus size: 28
45895607 GTGAGCATGA
* * *
45895617 ATATAAATGTGACTAGGCCTAACGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
**
45895645 ATATAAATGTGATTTGGGCCTAATGAACC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* *
45895674 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
45895703 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
* *
45895731 AGATACATGT
1 ATATAAATGT
45895741 ATGTGAAATT
Statistics
Matches: 77, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
28 33 0.43
29 44 0.57
ACGTcount: A:0.31, C:0.15, G:0.26, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:45903882 original size:39 final size:40
Alignment explanation
Indices: 45903712--45903973 Score: 273
Period size: 40 Copynumber: 6.6 Consensus size: 40
45903702 TTGAATGCTG
* * * * * *
45903712 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
45903752 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA-A
* * * *
45903792 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
45903832 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-TTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
45903871 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
45903911 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
45903950 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45903974 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 22, Indels: 13
0.85 0.10 0.06
Matches are distributed among these distances:
39 72 0.37
40 112 0.58
41 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:45903900 original size:79 final size:79
Alignment explanation
Indices: 45903765--45903973 Score: 269
Period size: 79 Copynumber: 2.6 Consensus size: 79
45903755 GGACTAAGAT
* * * * *
45903765 CCGAAGGCATTTGTGCGAGATAC-AAGTTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCA-TTGTGCGAGTTACTAA-ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACT
45903829 AAATCCGGGTTAAGTC
64 AAATCCGGGTTAAGTC
* * *
45903845 CCGAAGGCATTCGTGCGA-TTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTA
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTA
45903909 AATCCGGGTTAAGTC
65 AATCCGGGTTAAGTC
* * * *
45903924 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
45903974 TGAACGAGGA
Statistics
Matches: 113, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
78 5 0.04
79 91 0.81
80 17 0.15
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGATACTAA
ATCCGGGTTAAGTC
Found at i:45903993 original size:79 final size:79
Alignment explanation
Indices: 45903826--45904008 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 79
45903816 TGTGCGAGAT
* * *
45903826 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGATTATTAAATCCGGGTTAAGTCCCGAAGG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGATTACTAAAACCGGGCTAAGTCCCGAAGG
** *
45903891 CATTCGTGCGAGTT
66 CATTCGAACGAGTG
* * *
45903905 ATTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAG
1 ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGA-TTACTAAAACCGGGCTAAGTCCCGAAG
*
45903969 GCATTTGAACGAG-G
65 GCATTCGAACGAGTG
* *
45903983 AGCTATATCC-GGTTAAATCCCGAAGG
1 A-CTAAATCCGGGTTAAGTCCCGAAGG
45904009 TACGTGATTT
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
78 21 0.24
79 68 0.76
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
ACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGATTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGTG
Found at i:45911579 original size:39 final size:40
Alignment explanation
Indices: 45911335--45911597 Score: 282
Period size: 40 Copynumber: 6.6 Consensus size: 40
45911325 TTGAATGCTG
* * * * * *
45911335 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
45911375 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA-A
* * * *
45911415 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
45911455 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
45911495 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
45911535 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
45911574 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
45911598 TGAACGAGGA
Statistics
Matches: 196, Mismatches: 22, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
39 35 0.18
40 151 0.77
41 10 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:45911617 original size:79 final size:80
Alignment explanation
Indices: 45911336--45911632 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
45911326 TGAATGCTGT
* ** * * * **
45911336 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * **
45911399 TGTGCGAGATAC-AAGTT
64 CGTGCGAGTTACTAA-AA
* * * * **
45911416 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
45911480 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * *
45911496 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
45911560 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
45911575 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
45911633 TACGTGATTT
Statistics
Matches: 184, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
78 16 0.09
79 47 0.26
80 111 0.60
81 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:45925283 original size:34 final size:33
Alignment explanation
Indices: 45925233--45925305 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
45925223 TTAGTCGCAA
*
45925233 TATCAGTATGGACCTTAGCCTAATACAGTAGCAG
1 TATCAGTATGGACCTTAGCCCAATACAGTA-CAG
* * *
45925267 TATCAGTGTGGGCCTTAGCCCAATTCAGTACAG
1 TATCAGTATGGACCTTAGCCCAATACAGTACAG
45925300 TATCAG
1 TATCAG
45925306 GAATGCATAC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
33 9 0.26
34 26 0.74
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (33 bp):
TATCAGTATGGACCTTAGCCCAATACAGTACAG
Found at i:45932378 original size:11 final size:12
Alignment explanation
Indices: 45932362--45932397 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
45932352 AGCCGAATAG
45932362 AAGAAAGA-AAA
1 AAGAAAGAGAAA
45932373 AAGAAAGAGAAA
1 AAGAAAGAGAAA
45932385 AA-AAAGAGAAA
1 AAGAAAGAGAAA
45932396 AA
1 AA
45932398 AAGCTCTCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 19 0.79
12 5 0.21
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AAGAAAGAGAAA
Found at i:45932385 original size:13 final size:12
Alignment explanation
Indices: 45932367--45932399 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
45932357 AATAGAAGAA
45932367 AGAAAAAAGAAAG
1 AGAAAAAA-AAAG
45932380 AG-AAAAAAAAG
1 AGAAAAAAAAAG
45932391 AGAAAAAAA
1 AGAAAAAAA
45932400 GCTCTCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 6 0.32
12 11 0.58
13 2 0.11
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (12 bp):
AGAAAAAAAAAG
Found at i:45933030 original size:38 final size:38
Alignment explanation
Indices: 45932988--45933184 Score: 300
Period size: 38 Copynumber: 5.4 Consensus size: 38
45932978 AACATAGACA
45932988 TGTATGTTCGGCCACATGAATGAGTACATAAGTTGATG
1 TGTATGTTCGGCCACATGAATGAGTACATAAGTTGATG
45933026 TGTATGTTCGGCCACATGAATGAGTACATAAGTTGATG
1 TGTATGTTCGGCCACATGAATGAGTACATAAGTTGATG
*
45933064 TGTATGTTCGGCCACATGAAGGAGTACATAAGTTGATG
1 TGTATGTTCGGCCACATGAATGAGTACATAAGTTGATG
*
45933102 TGTATGTTCGGCCACATGAATGAGGACAT-A----A-G
1 TGTATGTTCGGCCACATGAATGAGTACATAAGTTGATG
*
45933134 T-TACGTTCGGCCACATGAATGAGTACATAAGTTGATG
1 TGTATGTTCGGCCACATGAATGAGTACATAAGTTGATG
* *
45933171 TGTGTGTTCAGCCA
1 TGTATGTTCGGCCA
45933185 TAGGTAAGCA
Statistics
Matches: 144, Mismatches: 8, Indels: 14
0.87 0.05 0.08
Matches are distributed among these distances:
31 25 0.17
32 3 0.02
33 1 0.01
36 1 0.01
37 3 0.02
38 111 0.77
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (38 bp):
TGTATGTTCGGCCACATGAATGAGTACATAAGTTGATG
Found at i:45933145 original size:31 final size:31
Alignment explanation
Indices: 45933107--45933166 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
45933097 TGATGTGTAT
45933107 GTTCGGCCACATGAATGAGGACATAAGTTAC
1 GTTCGGCCACATGAATGAGGACATAAGTTAC
*
45933138 GTTCGGCCACATGAATGAGTACATAAGTT
1 GTTCGGCCACATGAATGAGGACATAAGTT
45933167 GATGTGTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (31 bp):
GTTCGGCCACATGAATGAGGACATAAGTTAC
Found at i:45933874 original size:40 final size:41
Alignment explanation
Indices: 45933780--45934000 Score: 187
Period size: 40 Copynumber: 5.6 Consensus size: 41
45933770 TATTCGAATG
* * *
45933780 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGA-GTGACT
* *
45933821 ATAACCGGACTAAGAT-CCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAG-TGACT
* * * *
45933861 ATATCCGGGCTAAGA-CCCAAAGGCATTTGTG-GTAGCGATT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCG-AGTGACT
* *
45933901 ATATCCGGGCTAAG-TCCCGAAGGCA-TCTGTGCTAGTGACC
1 ATATCCGGGCTAAGATCCCGAAGGCATTC-GTGCGAGTGACT
* * *
45933941 ATATCCGGGCTAAGA-CCCGAAGGCCTT-GTGCAAGT-AGTT
1 ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAGTGA-CT
45933980 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
45934001 ATTACTTGAG
Statistics
Matches: 147, Mismatches: 21, Indels: 27
0.75 0.11 0.14
Matches are distributed among these distances:
37 1 0.01
38 14 0.10
39 16 0.11
40 85 0.58
41 30 0.20
42 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.24
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTCGTGCGAGTGACT
Found at i:45933950 original size:80 final size:81
Alignment explanation
Indices: 45933780--45933964 Score: 225
Period size: 80 Copynumber: 2.3 Consensus size: 81
45933770 TATTCGAATG
* * *
45933780 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
*
45933845 ATTCGTGCGAGTTGCT
66 ATTCGTGCGAGTTGCC
* * * * *
45933861 ATATCCGGGCTAAGACCCAAAGGCATTTGTGGTA-GCGATTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGAT-CCGAAGG
*
45933924 CA-TCTGTGCTAG-TGACC
65 CATTC-GTGCGAGTTG-CC
45933941 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
45933965 CTTGTGCAAG
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
79 5 0.06
80 55 0.61
81 30 0.33
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGGCGACTATAACCGGACTAAGATCCGAAGGC
ATTCGTGCGAGTTGCC
Found at i:45936842 original size:46 final size:45
Alignment explanation
Indices: 45936775--45936945 Score: 204
Period size: 46 Copynumber: 3.7 Consensus size: 45
45936765 AACCCGCCCC
*
45936775 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* *
45936821 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * *
45936869 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
45936913 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
45936946 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 11, Indels: 17
0.79 0.08 0.13
Matches are distributed among these distances:
42 5 0.05
44 3 0.03
45 28 0.26
46 32 0.30
47 28 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:45936938 original size:92 final size:93
Alignment explanation
Indices: 45936780--45936949 Score: 306
Period size: 92 Copynumber: 1.8 Consensus size: 93
45936770 GCCCCTAAGT
* *
45936780 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45936845 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
45936873 GAACTCGGACTCAACTCAACGAGTTCGGACATT-GCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45936937 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45936950 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 44 0.59
93 30 0.41
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:45942424 original size:93 final size:93
Alignment explanation
Indices: 45942317--45942487 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
45942307 CGCCCTAAGT
* *
45942317 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45942382 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
45942410 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
45942475 CGAGTTCGGATGC
66 CGAGTTCGGATGC
45942488 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:45942484 original size:46 final size:46
Alignment explanation
Indices: 45942312--45942484 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
45942302 TAACCCGCCC
* * *
45942312 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
45942358 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
45942406 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
45942451 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
45942485 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 61 0.57
47 29 0.27
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:45944864 original size:34 final size:33
Alignment explanation
Indices: 45944829--45944893 Score: 76
Period size: 34 Copynumber: 1.9 Consensus size: 33
45944819 AATATCAGTG
* *
45944829 TGGACTTTAGCCCAATACAGTAGCAGTATCCGTG
1 TGGACCTTAGCCCAATACAGTA-CAGTATCAGTG
* * *
45944863 TGGGCCTTAGCCCAATTCAGTACAGTGTCAG
1 TGGACCTTAGCCCAATACAGTACAGTATCAG
45944894 AAATGCATAC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
33 7 0.27
34 19 0.73
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (33 bp):
TGGACCTTAGCCCAATACAGTACAGTATCAGTG
Found at i:45951814 original size:224 final size:223
Alignment explanation
Indices: 45951413--45951827 Score: 618
Period size: 224 Copynumber: 1.9 Consensus size: 223
45951403 GCTAGGCTCG
* * *
45951413 AGGCCCGATATCATTTCACCGCCATTATAGCCTGTTAGGCTCAAAAGCCCAAAAAGTATCTCACC
1 AGGCCCGATAACATTTCACCGCCATTATAGCCTGCTAGGCTCAAAAGCCCAAAAAGCATCTCACC
* * *
45951478 GGCATTACAGCCTGCTAGGCTCAAAGGCCCGAATAATATCTCACCGGCATTATAGCCTGCTAGGC
66 GGCATTACAGCCTACTAAGCTCAAAGGCCCGAATAACATCTCACCGGCATTATAGCCTGCTAGGC
45951543 TCAAAGGCCCGAATAACATTTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAACATT
131 TCAAAGGCCCGAATAACATTTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAACATT
45951608 TCACCGCATTATAGCCTGGTACGCTCAA
196 TCACCGCATTATAGCCTGGTACGCTCAA
* * * * *
45951636 AGGCCCGAATAACATTTCACCAG-TATTATAGCCTGCTAGGCTCAAAGGCCTGAATAA-CATTTC
1 AGGCCCG-ATAACATTTCACC-GCCATTATAGCCTGCTAGGCTCAAAAGCC-CAAAAAGCATCTC
* * * * *
45951699 ACTGGTATTATAGCCTACTAAGCTCAGAGGCCCGAATAACATTTCACCGGCATTATAGCCTGCTA
63 ACCGGCATTACAGCCTACTAAGCTCAAAGGCCCGAATAACATCTCACCGGCATTATAGCCTGCTA
* * *
45951764 GGCTCAAAGGCCCGAATAATATTTCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
128 GGCTCAAAGGCCCGAATAACATTTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAA
45951828 TCAAATCAAC
Statistics
Matches: 170, Mismatches: 19, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
223 7 0.04
224 158 0.93
225 5 0.03
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (223 bp):
AGGCCCGATAACATTTCACCGCCATTATAGCCTGCTAGGCTCAAAAGCCCAAAAAGCATCTCACC
GGCATTACAGCCTACTAAGCTCAAAGGCCCGAATAACATCTCACCGGCATTATAGCCTGCTAGGC
TCAAAGGCCCGAATAACATTTCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAACATT
TCACCGCATTATAGCCTGGTACGCTCAA
Found at i:45951828 original size:45 final size:45
Alignment explanation
Indices: 45951386--45951827 Score: 615
Period size: 45 Copynumber: 9.9 Consensus size: 45
45951376 TTTTCTCAAA
* * *
45951386 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* * * * * *
45951428 TCACCGCCATTATAGCCTGTTAGGCTCAAAAGCCC-AAAAAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA-CATT
* * *
45951473 TCACCGGCATTACAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
45951518 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
45951563 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCAGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
45951608 TCACC-GCATTATAGCCTGGTACGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* * *
45951652 TCACCAGTATTATAGCCTGCTAGGCTCAAAGGCCTGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* * * * *
45951697 TCACTGGTATTATAGCCTACTAAGCTCAGAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
*
45951742 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
45951787 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
45951828 TCAAATCAAC
Statistics
Matches: 356, Mismatches: 38, Indels: 9
0.88 0.09 0.02
Matches are distributed among these distances:
42 10 0.03
43 13 0.04
44 48 0.13
45 281 0.79
46 4 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
Found at i:45957058 original size:45 final size:44
Alignment explanation
Indices: 45956957--45957309 Score: 460
Period size: 45 Copynumber: 7.9 Consensus size: 44
45956947 TTTTCTCAAA
* * *
45956957 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCCCAATATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAATAACATT
* * * * *
45956999 TCACCGACATTATAGCCTGTTAGGCTCGAAA-GCCCAAAAAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCAATAA-CATT
* * *
45957044 TCACCGGCATTATAGCCTGCTAGGGTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC-AATAACATT
*
45957089 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC-AATAACATT
*
45957134 TCACCAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC-AATAACATT
* *
45957179 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCTGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCC-CAATAACATT
* *
45957224 TCACCGGCATTATAGCCTGCTAAGCTCAGAGGCCCAAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC-AATAACATT
45957269 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC-AATAA
45957310 TCAAATCAAC
Statistics
Matches: 275, Mismatches: 28, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
42 10 0.04
43 13 0.05
44 10 0.04
45 238 0.87
46 4 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAATAACATT
Found at i:45960268 original size:17 final size:17
Alignment explanation
Indices: 45960234--45960267 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
45960224 CAAATGCTCC
*
45960234 TATTTTGCTCTACAAAA
1 TATTTGGCTCTACAAAA
45960251 TATTTGGCTACTACAAA
1 TATTTGGCT-CTACAAA
45960268 TTAGCCTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (17 bp):
TATTTGGCTCTACAAAA
Found at i:45976445 original size:39 final size:39
Alignment explanation
Indices: 45976401--45976676 Score: 464
Period size: 39 Copynumber: 7.1 Consensus size: 39
45976391 ATGCAAGACA
45976401 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
45976440 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
45976479 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
45976518 CTGGAAATCTATCCGGGCTAAAGTCCCACAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
45976557 CTGGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
45976596 CTGGAAATGTATCCGGGAC-AAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGG-CTAAAGTCCCGCAGGCTTCGTG
* *
45976635 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
45976674 CTG
1 CTG
45976677 ATAATATAAT
Statistics
Matches: 224, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
39 223 1.00
40 1 0.00
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:45979516 original size:65 final size:65
Alignment explanation
Indices: 45979441--45979571 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
45979431 AGTCCCATGC
* *
45979441 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGTATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAATAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
45979506 ATCAGATAATAATAACATGGCATGCAATAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
1 ATCAGATAATAATAACATGGCATGCAATAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
45979571 A
1 A
45979572 ACCCTAGGGG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.25
Consensus pattern (65 bp):
ATCAGATAATAATAACATGGCATGCAATAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:45979630 original size:27 final size:26
Alignment explanation
Indices: 45979574--45979630 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
45979564 CAACCTTAAC
* * *
45979574 CCTAGGGGTATATCAGTAATTTTGCT
1 CCTAGGGGTAAATCAGTAATTTTCCA
*
45979600 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTCCA
45979627 CCTA
1 CCTA
45979631 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTCCA
Found at i:45982248 original size:34 final size:35
Alignment explanation
Indices: 45982190--45982261 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
45982180 TGTATCCTAG
*
45982190 CTACAGTCTCAGTCTTCTAAAGTTTTCAGT-TTTCC
1 CTACAGTCTCAGTCTTCTAAAG-TTTCAGTATTACC
* *
45982225 CTACTGTCTCAGT-TTCTACAGTTTCAGTATTACC
1 CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
45982259 CTA
1 CTA
45982262 ACTACAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 7 0.21
34 14 0.42
35 12 0.36
ACGTcount: A:0.21, C:0.26, G:0.11, T:0.42
Consensus pattern (35 bp):
CTACAGTCTCAGTCTTCTAAAGTTTCAGTATTACC
Found at i:45987306 original size:65 final size:65
Alignment explanation
Indices: 45987229--45987359 Score: 226
Period size: 65 Copynumber: 2.0 Consensus size: 65
45987219 AGTCCCATGC
* *
45987229 ATCAGATAATAATAACATGGCATGCAGTAAATAGTAACAGTCGAACATGCATTCAGGTCAACCTT
1 ATCAAATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
* *
45987294 ATCAAATAATAATAACATGGCATGTAGTAAATAGTAACAGTTAAACATGCATTCAGGTCAACCTT
1 ATCAAATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
45987359 A
1 A
45987360 ACCCTAGGGG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (65 bp):
ATCAAATAATAATAACATGGCATGCAGTAAATAGTAACAGTCAAACATGCATTCAGGTCAACCTT
Found at i:45991314 original size:47 final size:47
Alignment explanation
Indices: 45991256--45991838 Score: 1013
Period size: 47 Copynumber: 12.4 Consensus size: 47
45991246 CAGCCAAGAC
*
45991256 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45991303 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45991350 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45991397 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
45991444 AGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
45991491 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
45991538 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
45991585 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
45991632 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45991679 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45991726 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
45991773 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
45991820 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
45991839 TCCCGAAGGG
Statistics
Matches: 518, Mismatches: 18, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 518 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:45992029 original size:36 final size:37
Alignment explanation
Indices: 45991956--45992032 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
45991946 CCGAGCTCTA
* *
45991956 AAGA-CCGATGACTACGTGTGGGAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGGAATTATGTCCGGGT
*
45991992 AAGACCCGATAACTTCGTGT-GGAGATTATGTCC-GGT
1 AAGACCCGATAACTACGTGTGGGA-ATTATGTCCGGGT
45992028 AAGAC
1 AAGAC
45992033 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
36 15 0.42
37 21 0.58
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGGAATTATGTCCGGGT
Found at i:45994725 original size:24 final size:24
Alignment explanation
Indices: 45994697--45994744 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
45994687 GTTAATATGA
* *
45994697 ATTATGGTATTTATATTCAGACAT
1 ATTATGGTATTTACATTAAGACAT
*
45994721 ATTATGGTCTTTACATTAAGACAT
1 ATTATGGTATTTACATTAAGACAT
45994745 GCGCACTTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.44
Consensus pattern (24 bp):
ATTATGGTATTTACATTAAGACAT
Found at i:45996604 original size:43 final size:43
Alignment explanation
Indices: 45996556--45996704 Score: 171
Period size: 43 Copynumber: 3.5 Consensus size: 43
45996546 ATGGAGATGA
*
45996556 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTGT
1 GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGT
*
45996599 GATTACATGTAAGACCATGTCTAGGACATTGGCATCAT-TAAT-T
1 GATTACATGTAAGACCATGTCTAGGACATTGGCAT--TGTATTGT
* * * *
45996642 GATTACGTGTAAGACGC-TATCTAGGACAATGGCATCG-ATATGT
1 GATTACATGTAAGAC-CATGTCTAGGACATTGGCATTGTAT-TGT
*
45996685 GATAACATGTAAGACCATGT
1 GATTACATGTAAGACCATGT
45996705 AAGACCATAT
Statistics
Matches: 89, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
41 1 0.01
42 2 0.02
43 81 0.91
44 4 0.04
45 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (43 bp):
GATTACATGTAAGACCATGTCTAGGACATTGGCATTGTATTGT
Found at i:46020883 original size:50 final size:50
Alignment explanation
Indices: 46020804--46021137 Score: 321
Period size: 50 Copynumber: 6.8 Consensus size: 50
46020794 TGATGCTAGG
* *
46020804 GAGATATAAGAGCTAGTGTAAGAACATGTCTAGGACATGGCATCGACCTC
1 GAGATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* *
46020854 GAGATATGAGAGCTAGTGTAAGACTATGTCTGGGACATGGCATC-AGCCTC
1 GAGATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CCTC
* * * * *
46020904 GAGATACAAGAGCTAGTGTAAGATCATGTTTGGGACATGACATCG-GCT-
1 GAGATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * * *
46020952 -TGATAT--GTG-TCAGTGTAAGACCATGTCTCGGACATGGCATCGACATT
1 GAGATATAAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * *
46020999 GATAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTC
1 GAGATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * *
46021049 GATATACAAGAGTTAGTGTAAGACCATGTTTGGGACATGGCATCGACCAT-
1 GAGATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACC-TC
* * * *
46021099 GATG-TGT--GAGCCAGTGTAAAACCATGTTTGGGACATGGC
1 GA-GATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
46021138 GTCGGCACCT
Statistics
Matches: 233, Mismatches: 40, Indels: 24
0.78 0.13 0.08
Matches are distributed among these distances:
44 1 0.00
45 29 0.12
46 1 0.00
47 4 0.02
48 32 0.14
49 3 0.01
50 161 0.69
51 2 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (50 bp):
GAGATATAAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
Found at i:46021011 original size:95 final size:98
Alignment explanation
Indices: 46020812--46021135 Score: 315
Period size: 95 Copynumber: 3.3 Consensus size: 98
46020802 GGGAGATATA
* * * * *
46020812 AGAGCTAGTGTAAGAACATGTCTAGGACATGGCATCGACCTCGAGATATGAGAG-CTAGTGTAAG
1 AGAGCTAGTGTAAGACCATGTTTGGGACATGACATCGGCCTC--GATAT-AGAGTC-AGTGTAAG
* * * * **
46020876 ACTATGTCTGGGACATGGCATC-AGCC-TCGAGATACA
62 ACCATGTCTGGGACATGGCATCGA-CCATTGATAGATG
* * *
46020912 AGAGCTAGTGTAAGATCATGTTTGGGACATGACATCGG-CTTGATAT-GTGTCAGTGTAAGACCA
1 AGAGCTAGTGTAAGACCATGTTTGGGACATGACATCGGCCTCGATATAGAGTCAGTGTAAGACCA
*
46020975 TGTCTCGGACATGGCATCGA-CATTGATAGATG
66 TGTCTGGGACATGGCATCGACCATTGATAGATG
* * *
46021007 AGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATACAAGAGTTAGTGTAAGA
1 AGAGCTAGTGTAAGACCATGTTTGGGACATGACATCGGCCTCGATAT---AGAGTCAGTGTAAGA
*
46021072 CCATGTTTGGGACATGGCATCGACCA-TGAT-G-TG
63 CCATGTCTGGGACATGGCATCGACCATTGATAGATG
* * *
46021105 TGAGCCAGTGTAAAACCATGTTTGGGACATG
1 AGAGCTAGTGTAAGACCATGTTTGGGACATG
46021136 GCGTCGGCAC
Statistics
Matches: 189, Mismatches: 26, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
94 1 0.01
95 70 0.37
96 9 0.05
97 5 0.03
98 29 0.15
99 3 0.02
100 70 0.37
101 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (98 bp):
AGAGCTAGTGTAAGACCATGTTTGGGACATGACATCGGCCTCGATATAGAGTCAGTGTAAGACCA
TGTCTGGGACATGGCATCGACCATTGATAGATG
Found at i:46021081 original size:145 final size:145
Alignment explanation
Indices: 46020818--46021093 Score: 444
Period size: 145 Copynumber: 1.9 Consensus size: 145
46020808 TATAAGAGCT
* * *
46020818 AGTGTAAGAACATGTCTAGGACATGGCATCGACCTCGAGATATGAGAGCTAGTGTAAGACTATGT
1 AGTGTAAGAACATGTCTAGGACATGGCATCGACATCGAGAGATGAGAGCTAGTGTAAGACCATGT
*
46020883 CTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGATCATGTTTGGGACATGACATC
66 CTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGACCATGTTTGGGACATGACATC
46020948 GGCTTGATATGTGTC
131 GGCTTGATATGTGTC
* * * *
46020963 AGTGTAAGACCATGTCTCGGACATGGCATCGACATTGATAGATGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGAACATGTCTAGGACATGGCATCGACATCGAGAGATGAGAGCTAGTGTAAGACCATGT
* * * *
46021028 CTGGGACATGGCATCGGCCTCGATATACAAGAGTTAGTGTAAGACCATGTTTGGGACATGGCATC
66 CTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGACCATGTTTGGGACATGACATC
46021093 G
131 G
46021094 ACCATGATGT
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
145 119 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (145 bp):
AGTGTAAGAACATGTCTAGGACATGGCATCGACATCGAGAGATGAGAGCTAGTGTAAGACCATGT
CTGGGACATGGCATCAGCCTCGAGATACAAGAGCTAGTGTAAGACCATGTTTGGGACATGACATC
GGCTTGATATGTGTC
Found at i:46023229 original size:20 final size:21
Alignment explanation
Indices: 46023194--46023243 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 21
46023184 TCTTATAATA
46023194 TTTATATGTTTGAATTA-AATGT
1 TTTATATG-TTGAATTAGAAT-T
46023216 TTTATATG-TGAATTATGAATT
1 TTTATATGTTGAATTA-GAATT
46023237 TTTATAT
1 TTTATAT
46023244 AAATGAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
20 7 0.27
21 8 0.31
22 11 0.42
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (21 bp):
TTTATATGTTGAATTAGAATT
Found at i:46026170 original size:55 final size:53
Alignment explanation
Indices: 46026083--46026327 Score: 243
Period size: 55 Copynumber: 4.6 Consensus size: 53
46026073 ATTAGGGTTT
*
46026083 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCTAAGGC
* * * * * *
46026138 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTT--TCTAAGGC
* * * *
46026193 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-TAAGGC
*
46026246 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAAGTTTCTAAGGC
* * *
46026295 AAGGATACCACGTAAGACCATGACAAGTCATGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGG
46026328 CAATGGTTAG
Statistics
Matches: 160, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
49 30 0.19
52 7 0.04
53 40 0.25
54 12 0.08
55 67 0.42
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCTAAGGC
Found at i:46026289 original size:108 final size:110
Alignment explanation
Indices: 46026090--46026290 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
46026080 TTTAAGGATA
*
46026090 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
46026155 CCATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * *
46026200 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
46026262 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
46026291 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:46027902 original size:41 final size:41
Alignment explanation
Indices: 46027852--46027957 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
46027842 TACAAGGTCA
* *
46027852 TCAAGCAACCATGCGATCCTTAATCGGTGGATCCACGATTG
1 TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
*
46027893 TCAATCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
1 TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
*
46027934 TCAAGCGACCATGCGATCCTCAAT
1 TCAAGCAACCATGCGATCCTCAAT
46027958 TTCTTCCTCT
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (41 bp):
TCAAGCAACCATGCGATCCTCAATCGGTGGATCCACGATCG
Found at i:46028246 original size:27 final size:27
Alignment explanation
Indices: 46028215--46028537 Score: 192
Period size: 27 Copynumber: 12.0 Consensus size: 27
46028205 TTGGTAAATC
*
46028215 TACAAACCAAAGGTATTTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
46028242 TACAAACCAATGGTATTTCTGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** * *
46028269 TTGAAAGTCAAGGGCATTTCTA-TAATTT
1 TACAAA-CCAAGGGTATTTC-AGTAATTT
** ** * *
46028297 TTTAAATTAGGGGTATTTCTGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
46028324 TTCAAATCAAGGGTATTTC-GATAATTT
1 TACAAACCAAGGGTATTTCAG-TAATTT
* * * **
46028351 TCCAAATCAGGGGTATTTTGGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
* *
46028378 TACAAATCGAGGGTATTTC-GATAAATTT
1 TACAAACCAAGGGTATTTCAG-T-AATTT
* *
46028406 TACAAACCAGGGGTAATTT-GGTAATTT
1 TACAAACCAAGGGT-ATTTCAGTAATTT
* * * **
46028433 TGCTAA-TAGAGGGTATTTTGGTAATTT
1 TACAAACCA-AGGGTATTTCAGTAATTT
** * *
46028460 TGTAAACTAAGGGTATCT-AGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
** *
46028486 TGTAAACCAAGAGTA-TTCAGTAATTT
1 TACAAACCAAGGGTATTTCAGTAATTT
**
46028512 TGTAAACCAAGGGTATTTCAGTAATT
1 TACAAACCAAGGGTATTTCAGTAATT
46028538 CTATCCTATA
Statistics
Matches: 244, Mismatches: 38, Indels: 28
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.00
26 49 0.20
27 148 0.61
28 41 0.17
29 5 0.02
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
TACAAACCAAGGGTATTTCAGTAATTT
Found at i:46028430 original size:55 final size:54
Alignment explanation
Indices: 46028226--46028460 Score: 197
Period size: 55 Copynumber: 4.3 Consensus size: 54
46028216 ACAAACCAAA
** * ** *
46028226 GGTATTTC-AGTAATTTTACAAACCAATGGT-ATTTCTGTAATTTTTGAAAGTCAAG
1 GGTATTTCGA-TAATTTTACAAACCAGGGGTAATTT-GGTAATTTTACAAA-TCGAG
* * ** ** * * *
46028281 GGCATTTCTATAATTTTTTAAATTAGGGGT-ATTTCTGTAATTTTTCAAATCAAG
1 GGTATTTCGATAATTTTACAAACCAGGGGTAATTT-GGTAATTTTACAAATCGAG
* * *
46028335 GGTATTTCGATAATTTTCCAAATCAGGGGTATTTTGGTAATTTTACAAATCGAG
1 GGTATTTCGATAATTTTACAAACCAGGGGTAATTTGGTAATTTTACAAATCGAG
* * *
46028389 GGTATTTCGATAAATTTTACAAACCAGGGGTAATTTGGTAATTTTGCTAATAGAG
1 GGTATTTCGAT-AATTTTACAAACCAGGGGTAATTTGGTAATTTTACAAATCGAG
* *
46028444 GGTATTTTGGTAATTTT
1 GGTATTTCGATAATTTT
46028461 GTAAACTAAG
Statistics
Matches: 152, Mismatches: 25, Indels: 7
0.83 0.14 0.04
Matches are distributed among these distances:
54 63 0.41
55 88 0.58
56 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (54 bp):
GGTATTTCGATAATTTTACAAACCAGGGGTAATTTGGTAATTTTACAAATCGAG
Found at i:46028488 original size:26 final size:26
Alignment explanation
Indices: 46028453--46028537 Score: 127
Period size: 26 Copynumber: 3.2 Consensus size: 26
46028443 GGGTATTTTG
*
46028453 GTAATTTTGTAAACTAAGGGTA-TCTA
1 GTAATTTTGTAAACCAAGGGTATTC-A
*
46028479 GTAATTTTGTAAACCAAGAGTATTCA
1 GTAATTTTGTAAACCAAGGGTATTCA
46028505 GTAATTTTGTAAACCAAGGGTATTTCA
1 GTAATTTTGTAAACCAAGGGTA-TTCA
46028532 GTAATT
1 GTAATT
46028538 CTATCCTATA
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 42 0.78
27 12 0.22
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.38
Consensus pattern (26 bp):
GTAATTTTGTAAACCAAGGGTATTCA
Found at i:46028556 original size:27 final size:27
Alignment explanation
Indices: 46028526--46028602 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
46028516 AACCAAGGGT
* *
46028526 ATTTCAGTAATTCTATCCTATAGGGGC
1 ATTTCAGTAATTCTACCCTATAGGGAC
* *
46028553 ATTTCAGTAATTCTACCCTACAGGGAT
1 ATTTCAGTAATTCTACCCTATAGGGAC
* * *
46028580 ATTTTAGTAATACTAGCCTATAG
1 ATTTCAGTAATTCTACCCTATAG
46028603 ATTTGAGATT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTATAGGGAC
Found at i:46041605 original size:17 final size:16
Alignment explanation
Indices: 46041583--46041616 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
46041573 ATTAGTGAAC
*
46041583 ATTGTCATTGCATTGTT
1 ATTGTCATCGCA-TGTT
46041600 ATTGTCATCGCATGTT
1 ATTGTCATCGCATGTT
46041616 A
1 A
46041617 ATCTTAGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.47
Consensus pattern (16 bp):
ATTGTCATCGCATGTT
Found at i:46042954 original size:46 final size:46
Alignment explanation
Indices: 46042851--46042972 Score: 140
Period size: 46 Copynumber: 2.6 Consensus size: 46
46042841 GTTATGAGCT
* * *
46042851 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACATCGAGACGAAAGCC
* *
46042899 AGTGTAAGACATGTCTAGGACATGCATTGTAC-TCGAGAC-ATAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCG-ACATCGAGACGA-AAGCC
*
46042945 AGTGTAAGACATGCCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
46042973 AGCTACGAGA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
45 1 0.02
46 39 0.61
47 15 0.23
48 9 0.14
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATCGAGACGAAAGCC
Found at i:46050711 original size:50 final size:49
Alignment explanation
Indices: 46050553--46050729 Score: 181
Period size: 50 Copynumber: 3.7 Consensus size: 49
46050543 GGGTTATTAT
* * * *
46050553 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA--CGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-CGAGATGTGA
* *
46050601 GAGCTAGTGTAAGA-CTTGTTTGGGACAT-GCATCGGCTACGAGATGT--
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-TACGAGATGTGA
* *
46050647 G-TC-AGTGTAAGACCATGTCTGGGACATGGCATCGGTACGGATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTAC-GAGATGTGA
* *
46050695 GAGCTAGTGTAAGACCATGTTTAGGACATGGCATC
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC
46050730 AACCTCGATG
Statistics
Matches: 106, Mismatches: 13, Indels: 18
0.77 0.09 0.13
Matches are distributed among these distances:
44 9 0.08
45 16 0.15
46 25 0.24
47 13 0.12
48 14 0.13
49 1 0.01
50 28 0.26
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (49 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTACGAGATGTGA
Found at i:46076559 original size:49 final size:49
Alignment explanation
Indices: 46076495--46076725 Score: 268
Period size: 49 Copynumber: 4.7 Consensus size: 49
46076485 TTGGTACGCA
* *
46076495 TAGTAGCCTGCACTTAGTACTAAACATGTGACCAATTATCCGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
* ** * *
46076544 TAGTAGTCTGCACTTAGTACTACACACT-TGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACA-TGTGACC-AATTATCCGGTACACG
* * * * * *
46076594 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-TTATCCGGTACACG
* * *
46076645 TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
46076694 TAGTAGCCTGCACTTAGTACTACACA-GTGACC
1 TAGTAGCCTGCACTTAGTACTACACATGTGACC
46076726 TCACAATAGA
Statistics
Matches: 149, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
48 5 0.03
49 64 0.43
50 44 0.30
51 36 0.24
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGGTACACG
Found at i:46076717 original size:100 final size:98
Alignment explanation
Indices: 46076495--46076725 Score: 270
Period size: 101 Copynumber: 2.3 Consensus size: 98
46076485 TTGGTACGCA
* ** * *
46076495 TAGTAGCCTGCACTTAGTACTAAACATGTGACCAATTATCCGGTACATGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACA-GTGACCAATTATCCGGTACACATAATAGCCTGCACTTA
* *
46076560 GTACTACACACTTGACCTAACCATCTGATACACG
65 GTACTACACACTCGACCTAACCATCAGATACACG
* * * *
46076594 TAGTAACCTGCACTTAGTACTACACACGTGATCGAAGTTATCGGGTACGCATAATAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTACACA-GTGA-CCAA-TTATCCGGTACACATAATAGCCTGCACT
**
46076659 TAGTACTACACA-TGCGACC-AATTATCCAG-TACACG
63 TAGTACTACACACT-CGACCTAACCAT-CAGATACACG
46076694 TAGTAGCCTGCACTTAGTACTACACAGTGACC
1 TAGTAGCCTGCACTTAGTACTACACAGTGACC
46076726 TCACAATAGA
Statistics
Matches: 112, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
98 1 0.01
99 32 0.29
100 39 0.35
101 40 0.36
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACAGTGACCAATTATCCGGTACACATAATAGCCTGCACTTAG
TACTACACACTCGACCTAACCATCAGATACACG
Found at i:46080679 original size:20 final size:20
Alignment explanation
Indices: 46080654--46080701 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
46080644 TAATGTACAT
46080654 GCCCGTGTGCTTTGGGACAC
1 GCCCGTGTGCTTTGGGACAC
46080674 GCCCGTGTGCTTTGGGACAC
1 GCCCGTGTGCTTTGGGACAC
*
46080694 ACCCGTGT
1 GCCCGTGT
46080702 CCCTTACCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.10, C:0.31, G:0.33, T:0.25
Consensus pattern (20 bp):
GCCCGTGTGCTTTGGGACAC
Found at i:46083400 original size:79 final size:82
Alignment explanation
Indices: 46083289--46083473 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
46083279 GCTACTCGTT
* *
46083289 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
46083352 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
46083369 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
46083432 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
46083449 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46083474 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:46083473 original size:40 final size:40
Alignment explanation
Indices: 46083270--46083473 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
46083260 CGGAATTTAA
** *
46083270 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46083310 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
46083350 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46083389 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
46083429 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
46083469 CCGGA
1 CCGGA
46083474 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:46089086 original size:33 final size:34
Alignment explanation
Indices: 46089029--46089095 Score: 127
Period size: 33 Copynumber: 2.0 Consensus size: 34
46089019 TTCATTCAGC
46089029 CCATCCTCGAAGCGTTTACACATGATAGCCTCGG
1 CCATCCTCGAAGCGTTTACACATGATAGCCTCGG
46089063 CCATCCTCGAAGCG-TTACACATGATAGCCTCGG
1 CCATCCTCGAAGCGTTTACACATGATAGCCTCGG
46089096 ACGAAAACAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 19 0.58
34 14 0.42
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (34 bp):
CCATCCTCGAAGCGTTTACACATGATAGCCTCGG
Found at i:46091260 original size:39 final size:40
Alignment explanation
Indices: 46091231--46091410 Score: 187
Period size: 39 Copynumber: 4.6 Consensus size: 40
46091221 GCTACTCGTT
*
46091231 CAAATGCCTTCGGGACATAGCCCG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* *
46091270 CAAATGCCTTC-TGACTTAACCCGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
* *
46091308 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GATTATAGTAACTCGCA
* * * *
46091347 CAAATGCCTTC-GGATCTTAGTCCGGA-TATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAG-CCCGATTATAGTAAC-TCGCA
46091388 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
46091411 GACATCATTC
Statistics
Matches: 119, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
38 41 0.34
39 43 0.36
40 22 0.18
41 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGATTATAGTAACTCGCA
Found at i:46091339 original size:77 final size:80
Alignment explanation
Indices: 46091231--46091412 Score: 221
Period size: 77 Copynumber: 2.3 Consensus size: 80
46091221 GCTACTCGTT
* ** *
46091231 CAAATGCCTTCGGGACATAGCCCGTTATAGTAACTCGCACAAATGCCTTCTGA-CTTA-ACCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGATCTTAGACCCGA
* *
46091294 TTTAGTAAC-TCGCA
66 TATAGTAACTTAGCA
* * *
46091308 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACAAATGCCTTCGGATCTTAGACCCG
* *
46091372 ATATGGTCACTTAGCA
65 ATATAGTAACTTAGCA
46091388 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46091413 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
76 9 0.10
77 38 0.43
78 4 0.04
79 19 0.21
80 19 0.21
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACAAATGCCTTCGGATCTTAGACCCGA
TATAGTAACTTAGCA
Found at i:46094308 original size:38 final size:39
Alignment explanation
Indices: 46094198--46094322 Score: 180
Period size: 39 Copynumber: 3.2 Consensus size: 39
46094188 TTCAGTGATG
*
46094198 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
46094237 TATATCCAGACTTAGGGTCCGCAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
46094276 TATATCCGGACTTAAGGT-CGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
46094314 TATGTCCGG
1 TATATCCGG
46094323 GCTAAAGTCC
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
38 25 0.32
39 52 0.68
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:46094356 original size:77 final size:78
Alignment explanation
Indices: 46094198--46094340 Score: 173
Period size: 77 Copynumber: 1.8 Consensus size: 78
46094188 TTCAGTGATG
* * * **
46094198 TATATCCGGACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCAGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGC
*
46094263 TATGTGCTAGAAT
66 TATGAGCTAGAAT
* * * *
46094276 TATATCCGGACTTAAGGT-CGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCCCGCAGG
1 TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAATATATCCAGACTTAAAGT-CCGCAGG
46094339 CT
65 CT
46094341 TCGAGCTGGT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
76 4 0.07
77 34 0.62
78 17 0.31
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCACAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGC
TATGAGCTAGAAT
Found at i:46102085 original size:39 final size:39
Alignment explanation
Indices: 46102031--46102156 Score: 225
Period size: 39 Copynumber: 3.2 Consensus size: 39
46102021 TTCAGTGATG
46102031 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
46102070 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * *
46102109 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
46102148 TATATCCGG
1 TATATCCGG
46102157 GCTAAAGTCT
Statistics
Matches: 84, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 84 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:46102183 original size:39 final size:39
Alignment explanation
Indices: 46102031--46102183 Score: 137
Period size: 39 Copynumber: 3.9 Consensus size: 39
46102021 TTCAGTGATG
** * * * *
46102031 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAAGCTACGAGCTGGAAA
** * * * *
46102070 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAAGTCCGCAAGCTACGAGCTGGAAA
* * *
46102109 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAAGTCCGCAAGCTACGAGCTGGAAA
* *
46102148 TATATCCGGGC-TAAAGTCTCGCAAGCTTCGAGCTGG
1 TATATCCGGACTTAAAGTC-CGCAAGCTACGAGCTGG
46102184 TATTATACCG
Statistics
Matches: 105, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 6 0.06
39 99 0.94
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAAGTCCGCAAGCTACGAGCTGGAAA
Found at i:46102183 original size:78 final size:78
Alignment explanation
Indices: 46102031--46102194 Score: 208
Period size: 78 Copynumber: 2.1 Consensus size: 78
46102021 TTCAGTGATG
* * * ** *
46102031 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
*
46102096 TATGTGCTGGAAT
66 TATGAGCTGGAAT
*
46102109 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGGC-TAAAGTCTCGCAAG
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTC-CGCAAG
*
46102173 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
46102187 TATA-CCGG
1 TATATCCGG
46102195 GTTTAAATTC
Statistics
Matches: 75, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
77 10 0.13
78 65 0.87
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
TATGAGCTGGAAT
Found at i:46102209 original size:78 final size:78
Alignment explanation
Indices: 46102031--46102221 Score: 201
Period size: 78 Copynumber: 2.5 Consensus size: 78
46102021 TTCAGTGATG
** * ** *
46102031 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
*
46102096 TATGTGCTGGAAT
66 TATGAGCTGGAAT
* * *
46102109 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGGC-TAAAGTCTCGCAAG
1 TATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGTC-CGCAAG
*
46102173 CT-TCGAGCTGGTAT
65 CTAT-GAGCTGGAAT
** *
46102187 TATA-CCGGGTTTAAATTCCCGCAGGCT-TGTGCTGG
1 TATATCCGGACTTAAAGT-CCGCAGGCTATGTGCTGG
46102222 TAATTGGTTT
Statistics
Matches: 96, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
77 22 0.23
78 74 0.77
ACGTcount: A:0.21, C:0.22, G:0.29, T:0.28
Consensus pattern (78 bp):
TATATCCGGACTTAAAGTCCGCAGGCTATGTGCTGGAAATATATCCGGACTTAAAGTCCGCAAGC
TATGAGCTGGAAT
Found at i:46102221 original size:38 final size:39
Alignment explanation
Indices: 46102049--46102226 Score: 159
Period size: 39 Copynumber: 4.6 Consensus size: 39
46102039 GACTTAGGGT
* **
46102049 CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGT-
1 CCGCAGGCTATGTGCTGGAATTATATCCGG-GTTAAAGTC
* *
46102088 CCGCAGGCTATGTGCTGGAATTATATCCGGACTTAAGGT-
1 CCGCAGGCTATGTGCTGGAATTATATCCGG-GTTAAAGTC
* * *
46102127 CCGCAGGCTACGTGCTGGAAATATATCCGGGCTAAAGTC
1 CCGCAGGCTATGTGCTGGAATTATATCCGGGTTAAAGTC
* * * * *
46102166 TCGCAAGCT-TCGAGCTGGTATTATA-CCGGGTTTAAATTC
1 CCGCAGGCTAT-GTGCTGGAATTATATCCGGG-TTAAAGTC
46102205 CCGCAGGCT-TGTGCTGGTAATT
1 CCGCAGGCTATGTGCTGG-AATT
46102227 GGTTTCAAGT
Statistics
Matches: 117, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
38 16 0.14
39 101 0.86
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (39 bp):
CCGCAGGCTATGTGCTGGAATTATATCCGGGTTAAAGTC
Found at i:46107936 original size:40 final size:40
Alignment explanation
Indices: 46107871--46107988 Score: 173
Period size: 40 Copynumber: 3.0 Consensus size: 40
46107861 CGGATGTAAC
* * * *
46107871 AACCAGCACAAATGCCTTTGGGACTTAACCCGGTTATCAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
46107911 GACCCGCACGAATGCCTTCGGGACTTAACCCGGTCATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
46107951 AACCCGCACGAATGCCTTCGGGACTGAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
46107989 TTTTTTTCCA
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:46111416 original size:39 final size:39
Alignment explanation
Indices: 46111362--46111477 Score: 205
Period size: 39 Copynumber: 3.0 Consensus size: 39
46111352 TTTAGTGATG
46111362 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
46111401 TATATCCGGACTTAGGGTCCGCAGGCTATGTCCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* *
46111440 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
46111478 ATATGTCTGG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:46111503 original size:78 final size:78
Alignment explanation
Indices: 46111362--46111505 Score: 198
Period size: 78 Copynumber: 1.8 Consensus size: 78
46111352 TTTAGTGATG
* * * * *
46111362 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTAAAGGTCCGCAGGC
46111427 TATGTCCTGGAAT
66 TATGTCCTGGAAT
* * * * *
46111440 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATGTCTGGGCTAAAGTTCTGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTAAAGGTCCGCAGGC
46111505 T
66 T
46111506 TCGAGCTGGT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
78 56 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (78 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCGGACTAAAGGTCCGCAGGC
TATGTCCTGGAAT
Found at i:46113612 original size:43 final size:43
Alignment explanation
Indices: 46113539--46113625 Score: 120
Period size: 43 Copynumber: 2.0 Consensus size: 43
46113529 GTTACATGAA
*
46113539 TCGCATCCATTATGAACTCGAACCTATCAACAAGCTCGGATGC
1 TCGCATCCATAATGAACTCGAACCTATCAACAAGCTCGGATGC
* * * * *
46113582 TCGCATCCATAATGAACTTGGACCTCTCAACGAGCTTGGATGC
1 TCGCATCCATAATGAACTCGAACCTATCAACAAGCTCGGATGC
46113625 T
1 T
46113626 ACATACCTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.28, C:0.29, G:0.18, T:0.25
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCGAACCTATCAACAAGCTCGGATGC
Found at i:46120798 original size:30 final size:31
Alignment explanation
Indices: 46120757--46120814 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
46120747 TTTTCGAGTC
* *
46120757 TAGGGGCAAAATTGTAATTCTG-CAAAGGTT
1 TAGGGGAAAAATTATAATTCTGACAAAGGTT
*
46120787 TAGGGGAAAAATTATAATTTTGACAAAG
1 TAGGGGAAAAATTATAATTCTGACAAAG
46120815 TTTGAGTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 19 0.79
31 5 0.21
ACGTcount: A:0.40, C:0.07, G:0.24, T:0.29
Consensus pattern (31 bp):
TAGGGGAAAAATTATAATTCTGACAAAGGTT
Found at i:46121550 original size:47 final size:47
Alignment explanation
Indices: 46121484--46121605 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
46121474 GCATTGGCAC
* *
46121484 TAAGACAAGGATACTATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
*
46121531 TAAGACAAGGATACCATGTAAGACCATGTTTATAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
** *
46121578 TAAGATGAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
46121606 CCAAGGCATG
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTAGAACATGGCATTTGG
Found at i:46121713 original size:55 final size:53
Alignment explanation
Indices: 46121585--46121780 Score: 216
Period size: 54 Copynumber: 3.6 Consensus size: 53
46121575 TGGTAAGATG
* * * *
46121585 AGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGTA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAA-GCA
* * * *
46121639 AGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGATACTATAAGACAA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAG-TTCTATAAG-C-A
* * *
46121695 AGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAA-GCA
* *
46121747 AGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AGGATACCATGTAAGACCATGCCAAGACATGGCA
46121781 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
52 4 0.03
53 31 0.26
54 42 0.35
55 39 0.32
56 4 0.03
ACGTcount: A:0.36, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
AGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGCA
Found at i:46129186 original size:50 final size:49
Alignment explanation
Indices: 46129070--46129245 Score: 185
Period size: 50 Copynumber: 3.5 Consensus size: 49
46129060 TGAGGTCGCA
* * * * *
46129070 TGTGTAGTACTAAGTTCAGGCTACTATGCGTACCTGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACC---AGACTGTAGGTCACG
* **
46129121 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
46129171 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
*
46129220 TGTGTAGTACAAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
46129246 TGCGTACGAG
Statistics
Matches: 106, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
47 1 0.01
48 4 0.04
49 30 0.28
50 42 0.40
51 29 0.27
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:46129482 original size:16 final size:19
Alignment explanation
Indices: 46129461--46129497 Score: 53
Period size: 16 Copynumber: 2.1 Consensus size: 19
46129451 GGAATGGATT
46129461 AAGTGAA-ATT-GT-GTAA
1 AAGTGAACATTCGTAGTAA
46129477 AAGTGAACATTCGTAGTAA
1 AAGTGAACATTCGTAGTAA
46129496 AA
1 AA
46129498 CAGTATTAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 7 0.39
17 3 0.17
18 2 0.11
19 6 0.33
ACGTcount: A:0.46, C:0.05, G:0.22, T:0.27
Consensus pattern (19 bp):
AAGTGAACATTCGTAGTAA
Found at i:46131524 original size:30 final size:30
Alignment explanation
Indices: 46131489--46131548 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
46131479 TCATGCCAAC
46131489 ATAAGATAATATCATACCAAAACATTTCCT
1 ATAAGATAATATCATACCAAAACATTTCCT
46131519 ATAAGATAATATCATACCAAAACATTTCCT
1 ATAAGATAATATCATACCAAAACATTTCCT
46131549 TACATACGTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.47, C:0.20, G:0.03, T:0.30
Consensus pattern (30 bp):
ATAAGATAATATCATACCAAAACATTTCCT
Found at i:46133700 original size:42 final size:42
Alignment explanation
Indices: 46133637--46133724 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
46133627 AACCTGACCG
*
46133637 TGTGTCAAACACAACTGAGACACACGCCTGTGTCCCTGCCCA
1 TGTGTCAAACACAACTAAGACACACGCCTGTGTCCCTGCCCA
* * *
46133679 TGTGTCACACATAACTAAGACACACGCCTGTGTCTCTGCCCA
1 TGTGTCAAACACAACTAAGACACACGCCTGTGTCCCTGCCCA
46133721 TGTG
1 TGTG
46133725 GACAAAAATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (42 bp):
TGTGTCAAACACAACTAAGACACACGCCTGTGTCCCTGCCCA
Found at i:46137378 original size:16 final size:15
Alignment explanation
Indices: 46137345--46137377 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
46137335 TTGCACGATG
46137345 TTTCTTCCTTCTCCT
1 TTTCTTCCTTCTCCT
46137360 TTTCTTCTCTTC-CCT
1 TTTCTTC-CTTCTCCT
46137375 TTT
1 TTT
46137378 TAATTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTCTTCCTTCTCCT
Found at i:46149527 original size:78 final size:81
Alignment explanation
Indices: 46149384--46149565 Score: 212
Period size: 78 Copynumber: 2.3 Consensus size: 81
46149374 GCTACTCGTT
* ** *
46149384 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* * *
46149449 ATTTAGTAAC-TCGCG
66 ATATAGTAACTTAGCA
* **
46149464 CAAATGCCTTCGGG-CTTAGCCCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
* *
46149526 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
46149543 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
46149566 GACATCATTC
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
77 3 0.03
78 45 0.52
79 25 0.29
80 14 0.16
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCA
Found at i:46149567 original size:40 final size:40
Alignment explanation
Indices: 46149365--46149567 Score: 218
Period size: 40 Copynumber: 5.1 Consensus size: 40
46149355 CGGAATTTAA
** *
46149365 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
46149405 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46149445 CCGGATTTAGTAACTCGCGCAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
46149484 CCGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
46149523 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
46149563 CCGGA
1 CCGGA
46149568 CATCATTCAA
Statistics
Matches: 136, Mismatches: 21, Indels: 12
0.80 0.12 0.07
Matches are distributed among these distances:
37 2 0.01
38 21 0.15
39 21 0.15
40 81 0.60
41 11 0.08
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:46161129 original size:43 final size:43
Alignment explanation
Indices: 46161082--46161198 Score: 121
Period size: 42 Copynumber: 2.7 Consensus size: 43
46161072 TCCGAGATGT
* *
46161082 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAG
1 GGTCTTACATGTAATCAAATATCGATGCCAATGCCCCAAACAG
*** ** * *
46161125 GGTCTTACACAAAATCATGTA-CGATGCCAATGCCCCAGACAT
1 GGTCTTACATGTAATCAAATATCGATGCCAATGCCCCAAACAG
46161167 GGTCTTACATGTAAATCACAA-ATCGATGCCAA
1 GGTCTTACATGT-AATCA-AATATCGATGCCAA
46161199 CGTCCTAGAC
Statistics
Matches: 57, Mismatches: 14, Indels: 5
0.75 0.18 0.07
Matches are distributed among these distances:
42 26 0.46
43 22 0.39
44 9 0.16
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (43 bp):
GGTCTTACATGTAATCAAATATCGATGCCAATGCCCCAAACAG
Found at i:46162334 original size:18 final size:18
Alignment explanation
Indices: 46162292--46162334 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
46162282 AAGAAACATT
*
46162292 ATCAGAACTAGAATCAAA
1 ATCAGAACCAGAATCAAA
* *
46162310 ATGAGAACCAGAATCAGA
1 ATCAGAACCAGAATCAAA
46162328 ATCAGAA
1 ATCAGAA
46162335 TGTGAATGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.53, C:0.16, G:0.16, T:0.14
Consensus pattern (18 bp):
ATCAGAACCAGAATCAAA
Found at i:46162491 original size:27 final size:26
Alignment explanation
Indices: 46162453--46162560 Score: 99
Period size: 27 Copynumber: 4.0 Consensus size: 26
46162443 AGCATGGCTG
* *
46162453 CCAGAACAGATATTGTGATAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
46162479 CCAGATATAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
46162506 CCAGAACAGATATTTATGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
46162533 CCAGAATCAGATAATGTGGCAAAGCCA
1 CCAGAA-CAGATATTGTGACAGAGCCA
46162560 C
1 C
46162561 TTAACAGAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 11 0.16
27 52 0.75
28 6 0.09
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:46162766 original size:22 final size:22
Alignment explanation
Indices: 46162718--46162769 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
46162708 GTAAATACAT
*
46162718 TTGGCACGAAGCCATAATCAAG
1 TTGGCACAAAGCCATAATCAAG
* * * *
46162740 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAATCAAG
46162762 TTGGCACA
1 TTGGCACA
46162770 TAGACCTAGC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAAG
Found at i:46172142 original size:93 final size:93
Alignment explanation
Indices: 46172027--46172198 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
46172017 GCCCATAAGT
*
46172027 GAACTCAGACTCAACTCAACGAGCTCA-AGCGTTCGCATCCATAAGCGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAGCTCAGA-CATTCGCATCCATAAGCGAACTCGGACTCAACTCA
46172091 ACGAGCTCGGATGCCTAGTTACATCTCTC
65 ACGAGCTCGGATGCCTAGTTACATCTCTC
* * * * *
46172120 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
* *
46172185 TGAGTTCGGATGCC
66 CGAGCTCGGATGCC
46172199 CAAATATTCT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
93 69 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGCGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:46172190 original size:46 final size:47
Alignment explanation
Indices: 46172019--46172194 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 47
46172009 TGTAACCCGC
* * * * *
46172019 CCATAAGTGAACTCAGACTCAACTCAACGAGCTC-AAGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
* *
46172065 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA-G-C-ATTTGCAT
*
46172115 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTTGCAT
1 C-CATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
* * *
46172158 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGA
46172195 TGCCCAAATA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 60 0.55
47 30 0.28
48 1 0.01
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGAGCATTTGCAT
Found at i:46177774 original size:16 final size:16
Alignment explanation
Indices: 46177753--46177783 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46177743 ACATATATTC
*
46177753 ATTTGTATCATATACA
1 ATTTGTATCACATACA
46177769 ATTTGTATCACATAC
1 ATTTGTATCACATAC
46177784 CAAACAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTTGTATCACATACA
Found at i:46178045 original size:56 final size:56
Alignment explanation
Indices: 46177981--46178088 Score: 198
Period size: 56 Copynumber: 1.9 Consensus size: 56
46177971 ACATATATCA
*
46177981 GAATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTCGCACACATATGTTG
1 GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATGTTG
*
46178037 GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACATAT
1 GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATAT
46178089 ATTGATGTCA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (56 bp):
GAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATGTTG
Found at i:46186459 original size:47 final size:47
Alignment explanation
Indices: 46186398--46186527 Score: 170
Period size: 47 Copynumber: 2.8 Consensus size: 47
46186388 GTGCGAATAA
* *
46186398 TACCTTGATTTGGCTGTGGGCCATGGTATAGGTATTCAAAGAGAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAAAGAGAAGT
* * *
46186445 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCTAGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAAAGAGAAGT
* * * * *
46186492 GACCTTGATTTGGCTACGAGCTATGGTATAAGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
46186528 TATCGATTGA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAAAGAGAAGT
Found at i:46200085 original size:29 final size:27
Alignment explanation
Indices: 46200067--46200136 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
46200057 ATATTAAGTC
46200067 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
46200094 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
46200122 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
46200137 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:46200130 original size:28 final size:28
Alignment explanation
Indices: 46200067--46200164 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
46200057 ATATTAAGTC
*
46200067 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
46200094 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
46200122 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
46200151 CGCACACTTAGTGC
1 CGCACACTTAGTGC
46200165 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:46207591 original size:30 final size:30
Alignment explanation
Indices: 46207550--46207628 Score: 149
Period size: 30 Copynumber: 2.6 Consensus size: 30
46207540 AATCGACCTC
*
46207550 TAACCGAATTAGATCAATTAATCGATAAAT
1 TAACTGAATTAGATCAATTAATCGATAAAT
46207580 TAACTGAATTAGATCAATTAATCGATAAAT
1 TAACTGAATTAGATCAATTAATCGATAAAT
46207610 TAACTGAATTAGATCAATT
1 TAACTGAATTAGATCAATT
46207629 CGATCGATTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.33
Consensus pattern (30 bp):
TAACTGAATTAGATCAATTAATCGATAAAT
Found at i:46208962 original size:13 final size:15
Alignment explanation
Indices: 46208944--46208976 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
46208934 GTTCTAAATT
46208944 AAATAACAT-ATA-A
1 AAATAACATAATATA
46208957 AAATAACATAATATA
1 AAATAACATAATATA
46208972 AAATA
1 AAATA
46208977 TTACAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 3 0.17
15 6 0.33
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (15 bp):
AAATAACATAATATA
Found at i:46210864 original size:13 final size:13
Alignment explanation
Indices: 46210848--46210880 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
46210838 TTTGATTAAA
*
46210848 TTAGTTAATTAGT
1 TTAGATAATTAGT
46210861 TTAGATAATTAGT
1 TTAGATAATTAGT
46210874 TTA-ATAA
1 TTAGATAA
46210881 ATAAATCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:46216264 original size:6 final size:6
Alignment explanation
Indices: 46216253--46216333 Score: 78
Period size: 6 Copynumber: 13.7 Consensus size: 6
46216243 AATCCTCTTA
* *
46216253 TTTTAT TTTTAT TTTTA- -TTTAT TCTTAT TTTTA- TTTTAT TTTATTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT
* * *
46216299 ATTTTAT TCTTAT TTTTCT TTTGAT TTTTAT TTTT
1 -TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
46216334 CAATTTTCTT
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
4 4 0.07
5 5 0.08
6 44 0.73
7 4 0.07
8 3 0.05
ACGTcount: A:0.16, C:0.04, G:0.01, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:46216332 original size:5 final size:5
Alignment explanation
Indices: 46216250--46216314 Score: 71
Period size: 5 Copynumber: 12.4 Consensus size: 5
46216240 TTGAATCCTC
46216250 TTATT TTATTT TTATT TT-TAT TTATT CTTATTT TTATT TTATT TTA-T
1 TTATT TTA-TT TTATT TTAT-T TTATT -TTA-TT TTATT TTATT TTATT
46216297 TTATT TTATT CTTATT TT
1 TTATT TTATT -TTATT TT
46216315 TCTTTTGATT
Statistics
Matches: 53, Mismatches: 0, Indels: 14
0.79 0.00 0.21
Matches are distributed among these distances:
4 5 0.09
5 29 0.55
6 17 0.32
7 2 0.04
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTATT
Done.